data_3GJL
#
_entry.id 3GJL
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.380
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3GJL pdb_00003gjl 10.2210/pdb3gjl/pdb
NDB BD0112 ? ?
RCSB RCSB051941 ? ?
WWPDB D_1000051941 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 3GJH . unspecified
PDB 3GJJ . unspecified
PDB 3GJK . unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3GJL
_pdbx_database_status.recvd_initial_deposition_date 2009-03-09
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Takenaka, A.' 1
'Juan, E.C.M.' 2
'Shimizu, S.' 3
'Haraguchi, T.' 4
'Xiao, M.' 5
'Kurose, T.' 6
'Ohkubo, A.' 7
'Sekine, M.' 8
'Shibata, T.' 9
'Millington, C.L.' 10
'Williams, D.M.' 11
#
_citation.id primary
_citation.title
;Insights into the stabilizing contributions of bicyclic cytosine analogues: crystal structures of DNA duplexes containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one
;
_citation.journal_abbrev 'To be Published'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year ?
_citation.journal_id_ASTM ?
_citation.country ?
_citation.journal_id_ISSN ?
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Takenaka, A.' 1 ?
primary 'Juan, E.C.M.' 2 ?
primary 'Shimizu, S.' 3 ?
primary 'Haraguchi, T.' 4 ?
primary 'Xiao, M.' 5 ?
primary 'Kurose, T.' 6 ?
primary 'Ohkubo, A.' 7 ?
primary 'Sekine, M.' 8 ?
primary 'Shibata, T.' 9 ?
primary 'Millington, C.M.' 10 ?
primary 'William, D.M.' 11 ?
#
_cell.entry_id 3GJL
_cell.length_a 26.477
_cell.length_b 26.477
_cell.length_c 98.958
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 6
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3GJL
_symmetry.space_group_name_H-M 'P 32 1 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 153
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*CP*GP*CP*GP*AP*A)-3'" 1818.231 1 ? ? ? ?
2 polymer syn "5'-D(P*TP*TP*(B7C)P*GP*CP*G)-3'" 1838.251 1 ? ? ? ?
3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ?
4 water nat water 18.015 42 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DG)(DA)(DA)' CGCGAA A ?
2 polydeoxyribonucleotide no yes '(DT)(DT)(B7C)(DG)(DC)(DG)' TTXGCG B ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DC n
1 4 DG n
1 5 DA n
1 6 DA n
2 1 DT n
2 2 DT n
2 3 B7C n
2 4 DG n
2 5 DC n
2 6 DG n
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.entity_id
_struct_ref.pdbx_db_isoform
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 PDB 3GJL 3GJL 1 ? ? ?
2 PDB 3GJL 3GJL 2 ? ? ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 3GJL A 1 ? 6 ? 3GJL 1 ? 6 ? 1 6
2 2 3GJL B 1 ? 6 ? 3GJL 7 ? 12 ? 7 12
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
B7C 'DNA linking' n '3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7,8-dihydropyrido[2,3-d]pyrimidin-2(3H)-one' ?
'C12 H16 N3 O7 P' 345.245
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ?
'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ?
'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O'
18.015
NA non-polymer . 'SODIUM ION' ? 'Na 1'
22.990
#
_exptl.entry_id 3GJL
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.74
_exptl_crystal.density_percent_sol 55.08
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pdbx_details
;25mM Sodium cacodylate (pH7.0), 6mM Spermine, tetrahydrochloride, 50mM NaCl, 5% MPD , VAPOR DIFFUSION, HANGING DROP, temperature 293K
;
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 270'
_diffrn_detector.pdbx_collection_date 2006-12-17
_diffrn_detector.details mirrors
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.00
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A'
_diffrn_source.pdbx_synchrotron_site 'Photon Factory'
_diffrn_source.pdbx_synchrotron_beamline AR-NW12A
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.00
#
_reflns.entry_id 3GJL
_reflns.observed_criterion_sigma_I 0
_reflns.observed_criterion_sigma_F 0
_reflns.d_resolution_low 50
_reflns.d_resolution_high 1.92
_reflns.number_obs 3233
_reflns.number_all 3233
_reflns.percent_possible_obs 99.4
_reflns.pdbx_Rmerge_I_obs 0.064
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 91.6
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 20.7
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.92
_reflns_shell.d_res_low 1.99
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_obs 0.291
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 15.9
_reflns_shell.pdbx_redundancy 21.4
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 3GJL
_refine.ls_number_reflns_obs 3165
_refine.ls_number_reflns_all 3205
_refine.pdbx_ls_sigma_I 0
_refine.pdbx_ls_sigma_F 2
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 22.34
_refine.ls_d_res_high 1.92
_refine.ls_percent_reflns_obs 99.3
_refine.ls_R_factor_obs 0.227
_refine.ls_R_factor_all 0.227
_refine.ls_R_factor_R_work 0.225
_refine.ls_R_factor_R_free 0.264
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.4
_refine.ls_number_reflns_R_free 139
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.952
_refine.correlation_coeff_Fo_to_Fc_free 0.937
_refine.B_iso_mean 25.343
_refine.aniso_B[1][1] -0.06
_refine.aniso_B[2][2] -0.06
_refine.aniso_B[3][3] 0.09
_refine.aniso_B[1][2] -0.03
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model 1ehv
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model isotropic
_refine.pdbx_stereochemistry_target_values 'Engh & Huber'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.162
_refine.pdbx_overall_ESU_R_Free 0.151
_refine.overall_SU_ML 0.094
_refine.overall_SU_B 3.325
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 246
_refine_hist.pdbx_number_atoms_ligand 1
_refine_hist.number_atoms_solvent 42
_refine_hist.number_atoms_total 289
_refine_hist.d_res_high 1.92
_refine_hist.d_res_low 22.34
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.013 0.021 ? 276 'X-RAY DIFFRACTION' ?
r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 2.209 3.000 ? 423 'X-RAY DIFFRACTION' ?
r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.086 0.200 ? 46 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.011 0.020 ? 127 'X-RAY DIFFRACTION' ?
r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.154 0.200 ? 71 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined 0.312 0.200 ? 163 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.186 0.200 ? 12 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined 0.443 0.200 ? 1 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.447 0.200 ? 27 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.062 0.200 ? 10 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined 0.457 0.200 ? 3 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_it 1.798 3.000 ? 333 'X-RAY DIFFRACTION' ?
r_scangle_it 2.407 4.500 ? 423 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.921
_refine_ls_shell.d_res_low 1.971
_refine_ls_shell.number_reflns_R_work 206
_refine_ls_shell.R_factor_R_work 0.255
_refine_ls_shell.percent_reflns_obs 100.00
_refine_ls_shell.R_factor_R_free 0.413
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 11
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 3GJL
_struct.title 'crystal structure of a DNA duplex containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3GJL
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'DNA, duplex, bicyclic cytosine, 7, 8-dihydropyridol[2, 3-d]pyrimidin-2-one'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 4 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? B DT 2 "O3'" ? ? ? 1_555 B B7C 3 P ? ? B DT 8 B B7C 9 1_555 ? ? ? ? ? ? ? 1.588 ? ?
covale2 covale both ? B B7C 3 "O3'" ? ? ? 1_555 B DG 4 P ? ? B B7C 9 B DG 10 1_555 ? ? ? ? ? ? ? 1.606 ? ?
metalc1 metalc ? ? C NA . NA ? ? ? 1_555 B DG 6 OP1 ? ? B NA 1 B DG 12 1_555 ? ? ? ? ? ? ? 1.906 ? ?
hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id B
_struct_site.pdbx_auth_comp_id NA
_struct_site.pdbx_auth_seq_id 1
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 6
_struct_site.details 'BINDING SITE FOR RESIDUE NA B 1'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 6 DC A 1 ? DC A 1 . ? 6_456 ?
2 AC1 6 DC A 1 ? DC A 1 . ? 1_455 ?
3 AC1 6 DC B 5 ? DC B 11 . ? 1_555 ?
4 AC1 6 DC B 5 ? DC B 11 . ? 6_566 ?
5 AC1 6 DG B 6 ? DG B 12 . ? 1_555 ?
6 AC1 6 DG B 6 ? DG B 12 . ? 6_566 ?
#
_database_PDB_matrix.entry_id 3GJL
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 3GJL
_atom_sites.fract_transf_matrix[1][1] 0.037769
_atom_sites.fract_transf_matrix[1][2] 0.021806
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.043611
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.010105
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
NA
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 8.761 8.061 46.456 1.00 44.99 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 9.344 7.571 47.670 1.00 41.92 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 9.561 8.680 48.678 1.00 41.36 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 10.974 8.916 48.803 1.00 41.51 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 8.942 10.066 48.410 1.00 37.97 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 8.654 10.653 49.692 1.00 35.12 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 10.084 10.829 47.748 1.00 38.36 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 11.277 10.277 48.540 1.00 38.44 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 12.597 10.277 47.892 1.00 37.77 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 13.743 9.914 48.661 1.00 36.82 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 13.622 9.606 49.855 1.00 33.10 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 14.948 9.905 48.055 1.00 34.12 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 15.071 10.218 46.780 1.00 35.80 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 16.280 10.199 46.236 1.00 37.87 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 13.932 10.574 45.983 1.00 36.39 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 12.735 10.597 46.572 1.00 37.79 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 7.353 11.551 49.900 1.00 33.35 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 7.308 12.675 48.938 1.00 30.75 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 7.298 11.792 51.363 1.00 30.89 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 6.193 10.561 49.526 1.00 31.05 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 5.755 9.581 50.427 1.00 26.74 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 4.674 8.779 49.759 1.00 26.31 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 3.500 9.567 49.472 1.00 23.79 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 5.123 8.175 48.433 1.00 24.03 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 4.539 6.867 48.420 1.00 24.92 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 4.545 9.144 47.412 1.00 24.70 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 3.256 9.623 48.090 1.00 20.85 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 2.927 11.014 47.913 1.00 20.85 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 3.822 12.043 47.906 1.00 20.64 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 3.252 13.200 47.782 1.00 20.16 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 1.897 12.909 47.735 1.00 21.52 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 0.784 13.771 47.634 1.00 21.13 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 0.781 14.976 47.568 1.00 22.33 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? -0.424 13.084 47.616 1.00 20.76 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? -0.540 11.730 47.696 1.00 20.50 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? -1.781 11.217 47.648 1.00 17.69 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 0.499 10.908 47.810 1.00 21.39 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 1.682 11.569 47.812 1.00 21.47 ? 2 DG A C4 1
ATOM 39 P P . DC A 1 3 ? 4.726 5.890 47.168 1.00 27.40 ? 3 DC A P 1
ATOM 40 O OP1 . DC A 1 3 ? 4.616 4.558 47.769 1.00 27.55 ? 3 DC A OP1 1
ATOM 41 O OP2 . DC A 1 3 ? 5.868 6.267 46.329 1.00 25.49 ? 3 DC A OP2 1
ATOM 42 O "O5'" . DC A 1 3 ? 3.450 6.053 46.250 1.00 25.86 ? 3 DC A "O5'" 1
ATOM 43 C "C5'" . DC A 1 3 ? 2.160 5.852 46.767 1.00 24.77 ? 3 DC A "C5'" 1
ATOM 44 C "C4'" . DC A 1 3 ? 1.151 6.540 45.891 1.00 21.87 ? 3 DC A "C4'" 1
ATOM 45 O "O4'" . DC A 1 3 ? 1.390 7.938 45.863 1.00 21.92 ? 3 DC A "O4'" 1
ATOM 46 C "C3'" . DC A 1 3 ? 1.203 6.141 44.419 1.00 22.19 ? 3 DC A "C3'" 1
ATOM 47 O "O3'" . DC A 1 3 ? 0.237 5.122 44.268 1.00 27.03 ? 3 DC A "O3'" 1
ATOM 48 C "C2'" . DC A 1 3 ? 0.804 7.411 43.663 1.00 21.90 ? 3 DC A "C2'" 1
ATOM 49 C "C1'" . DC A 1 3 ? 0.635 8.437 44.781 1.00 21.31 ? 3 DC A "C1'" 1
ATOM 50 N N1 . DC A 1 3 ? 1.181 9.763 44.542 1.00 22.46 ? 3 DC A N1 1
ATOM 51 C C2 . DC A 1 3 ? 0.346 10.912 44.484 1.00 20.24 ? 3 DC A C2 1
ATOM 52 O O2 . DC A 1 3 ? -0.868 10.808 44.584 1.00 21.54 ? 3 DC A O2 1
ATOM 53 N N3 . DC A 1 3 ? 0.902 12.118 44.325 1.00 21.08 ? 3 DC A N3 1
ATOM 54 C C4 . DC A 1 3 ? 2.213 12.232 44.209 1.00 21.73 ? 3 DC A C4 1
ATOM 55 N N4 . DC A 1 3 ? 2.710 13.454 44.039 1.00 22.20 ? 3 DC A N4 1
ATOM 56 C C5 . DC A 1 3 ? 3.081 11.099 44.256 1.00 21.44 ? 3 DC A C5 1
ATOM 57 C C6 . DC A 1 3 ? 2.527 9.898 44.421 1.00 22.49 ? 3 DC A C6 1
ATOM 58 P P . DG A 1 4 ? 0.076 4.359 42.883 1.00 29.09 ? 4 DG A P 1
ATOM 59 O OP1 . DG A 1 4 ? -0.405 3.016 43.324 1.00 28.65 ? 4 DG A OP1 1
ATOM 60 O OP2 . DG A 1 4 ? 1.219 4.559 41.935 1.00 26.69 ? 4 DG A OP2 1
ATOM 61 O "O5'" . DG A 1 4 ? -1.139 5.082 42.212 1.00 24.31 ? 4 DG A "O5'" 1
ATOM 62 C "C5'" . DG A 1 4 ? -2.389 5.069 42.838 1.00 26.44 ? 4 DG A "C5'" 1
ATOM 63 C "C4'" . DG A 1 4 ? -3.245 6.125 42.209 1.00 25.40 ? 4 DG A "C4'" 1
ATOM 64 O "O4'" . DG A 1 4 ? -2.583 7.396 42.384 1.00 25.24 ? 4 DG A "O4'" 1
ATOM 65 C "C3'" . DG A 1 4 ? -3.459 5.974 40.713 1.00 27.42 ? 4 DG A "C3'" 1
ATOM 66 O "O3'" . DG A 1 4 ? -4.784 6.367 40.546 1.00 30.16 ? 4 DG A "O3'" 1
ATOM 67 C "C2'" . DG A 1 4 ? -2.541 7.006 40.088 1.00 25.72 ? 4 DG A "C2'" 1
ATOM 68 C "C1'" . DG A 1 4 ? -2.579 8.076 41.142 1.00 26.62 ? 4 DG A "C1'" 1
ATOM 69 N N9 . DG A 1 4 ? -1.462 9.009 41.080 1.00 25.66 ? 4 DG A N9 1
ATOM 70 C C8 . DG A 1 4 ? -0.138 8.746 40.835 1.00 26.90 ? 4 DG A C8 1
ATOM 71 N N7 . DG A 1 4 ? 0.588 9.826 40.794 1.00 25.62 ? 4 DG A N7 1
ATOM 72 C C5 . DG A 1 4 ? -0.316 10.851 41.041 1.00 25.33 ? 4 DG A C5 1
ATOM 73 C C6 . DG A 1 4 ? -0.114 12.253 41.136 1.00 26.08 ? 4 DG A C6 1
ATOM 74 O O6 . DG A 1 4 ? 0.926 12.876 41.018 1.00 29.16 ? 4 DG A O6 1
ATOM 75 N N1 . DG A 1 4 ? -1.301 12.934 41.400 1.00 26.93 ? 4 DG A N1 1
ATOM 76 C C2 . DG A 1 4 ? -2.527 12.328 41.550 1.00 25.54 ? 4 DG A C2 1
ATOM 77 N N2 . DG A 1 4 ? -3.575 13.106 41.792 1.00 24.51 ? 4 DG A N2 1
ATOM 78 N N3 . DG A 1 4 ? -2.715 11.025 41.463 1.00 24.92 ? 4 DG A N3 1
ATOM 79 C C4 . DG A 1 4 ? -1.575 10.357 41.213 1.00 24.44 ? 4 DG A C4 1
ATOM 80 P P . DA A 1 5 ? -5.543 6.439 39.120 1.00 31.83 ? 5 DA A P 1
ATOM 81 O OP1 . DA A 1 5 ? -6.685 5.561 39.295 1.00 33.57 ? 5 DA A OP1 1
ATOM 82 O OP2 . DA A 1 5 ? -4.649 6.274 37.980 1.00 32.06 ? 5 DA A OP2 1
ATOM 83 O "O5'" . DA A 1 5 ? -6.016 7.944 39.068 1.00 30.19 ? 5 DA A "O5'" 1
ATOM 84 C "C5'" . DA A 1 5 ? -6.559 8.634 40.174 1.00 28.67 ? 5 DA A "C5'" 1
ATOM 85 C "C4'" . DA A 1 5 ? -7.017 9.999 39.711 1.00 27.77 ? 5 DA A "C4'" 1
ATOM 86 O "O4'" . DA A 1 5 ? -5.895 10.887 39.722 1.00 25.93 ? 5 DA A "O4'" 1
ATOM 87 C "C3'" . DA A 1 5 ? -7.605 10.100 38.290 1.00 27.64 ? 5 DA A "C3'" 1
ATOM 88 O "O3'" . DA A 1 5 ? -8.694 11.042 38.356 1.00 29.15 ? 5 DA A "O3'" 1
ATOM 89 C "C2'" . DA A 1 5 ? -6.432 10.543 37.423 1.00 24.95 ? 5 DA A "C2'" 1
ATOM 90 C "C1'" . DA A 1 5 ? -5.604 11.350 38.414 1.00 24.76 ? 5 DA A "C1'" 1
ATOM 91 N N9 . DA A 1 5 ? -4.183 11.206 38.229 1.00 22.94 ? 5 DA A N9 1
ATOM 92 C C8 . DA A 1 5 ? -3.478 10.056 38.047 1.00 20.99 ? 5 DA A C8 1
ATOM 93 N N7 . DA A 1 5 ? -2.209 10.245 37.888 1.00 23.65 ? 5 DA A N7 1
ATOM 94 C C5 . DA A 1 5 ? -2.065 11.625 37.982 1.00 23.82 ? 5 DA A C5 1
ATOM 95 C C6 . DA A 1 5 ? -0.952 12.475 37.900 1.00 24.09 ? 5 DA A C6 1
ATOM 96 N N6 . DA A 1 5 ? 0.299 12.059 37.715 1.00 22.98 ? 5 DA A N6 1
ATOM 97 N N1 . DA A 1 5 ? -1.164 13.799 38.027 1.00 22.75 ? 5 DA A N1 1
ATOM 98 C C2 . DA A 1 5 ? -2.411 14.233 38.229 1.00 23.16 ? 5 DA A C2 1
ATOM 99 N N3 . DA A 1 5 ? -3.530 13.536 38.325 1.00 20.59 ? 5 DA A N3 1
ATOM 100 C C4 . DA A 1 5 ? -3.278 12.223 38.192 1.00 21.68 ? 5 DA A C4 1
ATOM 101 P P . DA A 1 6 ? -9.510 11.477 37.037 1.00 32.93 ? 6 DA A P 1
ATOM 102 O OP1 . DA A 1 6 ? -10.850 11.856 37.570 1.00 33.30 ? 6 DA A OP1 1
ATOM 103 O OP2 . DA A 1 6 ? -9.387 10.456 35.997 1.00 28.29 ? 6 DA A OP2 1
ATOM 104 O "O5'" . DA A 1 6 ? -8.770 12.764 36.489 1.00 27.98 ? 6 DA A "O5'" 1
ATOM 105 C "C5'" . DA A 1 6 ? -8.561 13.863 37.319 1.00 26.71 ? 6 DA A "C5'" 1
ATOM 106 C "C4'" . DA A 1 6 ? -7.771 14.898 36.568 1.00 24.23 ? 6 DA A "C4'" 1
ATOM 107 O "O4'" . DA A 1 6 ? -6.396 14.513 36.513 1.00 25.74 ? 6 DA A "O4'" 1
ATOM 108 C "C3'" . DA A 1 6 ? -8.213 15.060 35.126 1.00 26.31 ? 6 DA A "C3'" 1
ATOM 109 O "O3'" . DA A 1 6 ? -8.585 16.400 35.166 0.50 24.22 ? 6 DA A "O3'" 1
ATOM 110 C "C2'" . DA A 1 6 ? -6.970 14.756 34.299 1.00 23.29 ? 6 DA A "C2'" 1
ATOM 111 C "C1'" . DA A 1 6 ? -5.834 14.910 35.292 1.00 22.67 ? 6 DA A "C1'" 1
ATOM 112 N N9 . DA A 1 6 ? -4.743 13.977 35.052 1.00 21.66 ? 6 DA A N9 1
ATOM 113 C C8 . DA A 1 6 ? -4.851 12.627 34.865 1.00 22.95 ? 6 DA A C8 1
ATOM 114 N N7 . DA A 1 6 ? -3.707 12.025 34.676 1.00 22.24 ? 6 DA A N7 1
ATOM 115 C C5 . DA A 1 6 ? -2.785 13.059 34.738 1.00 24.38 ? 6 DA A C5 1
ATOM 116 C C6 . DA A 1 6 ? -1.374 13.105 34.618 1.00 22.58 ? 6 DA A C6 1
ATOM 117 N N6 . DA A 1 6 ? -0.609 12.070 34.394 1.00 22.91 ? 6 DA A N6 1
ATOM 118 N N1 . DA A 1 6 ? -0.770 14.292 34.748 1.00 23.58 ? 6 DA A N1 1
ATOM 119 C C2 . DA A 1 6 ? -1.517 15.351 34.986 1.00 25.71 ? 6 DA A C2 1
ATOM 120 N N3 . DA A 1 6 ? -2.837 15.446 35.123 1.00 25.00 ? 6 DA A N3 1
ATOM 121 C C4 . DA A 1 6 ? -3.416 14.255 34.981 1.00 22.64 ? 6 DA A C4 1
ATOM 122 P P . DT B 2 1 ? 8.991 17.208 32.183 1.00 30.69 ? 7 DT B P 1
ATOM 123 O OP1 . DT B 2 1 ? 9.809 18.331 31.763 1.00 31.67 ? 7 DT B OP1 1
ATOM 124 O OP2 . DT B 2 1 ? 9.472 16.313 33.246 1.00 31.22 ? 7 DT B OP2 1
ATOM 125 O "O5'" . DT B 2 1 ? 7.602 17.825 32.682 1.00 28.03 ? 7 DT B "O5'" 1
ATOM 126 C "C5'" . DT B 2 1 ? 6.844 18.697 31.902 1.00 29.85 ? 7 DT B "C5'" 1
ATOM 127 C "C4'" . DT B 2 1 ? 5.575 18.948 32.662 1.00 30.25 ? 7 DT B "C4'" 1
ATOM 128 O "O4'" . DT B 2 1 ? 4.805 17.729 32.773 1.00 29.38 ? 7 DT B "O4'" 1
ATOM 129 C "C3'" . DT B 2 1 ? 5.782 19.450 34.097 1.00 31.46 ? 7 DT B "C3'" 1
ATOM 130 O "O3'" . DT B 2 1 ? 5.197 20.746 34.072 1.00 32.52 ? 7 DT B "O3'" 1
ATOM 131 C "C2'" . DT B 2 1 ? 5.031 18.428 34.951 1.00 29.29 ? 7 DT B "C2'" 1
ATOM 132 C "C1'" . DT B 2 1 ? 4.062 17.776 33.956 1.00 26.80 ? 7 DT B "C1'" 1
ATOM 133 N N1 . DT B 2 1 ? 3.646 16.378 34.225 1.00 26.31 ? 7 DT B N1 1
ATOM 134 C C2 . DT B 2 1 ? 2.308 16.107 34.270 1.00 25.03 ? 7 DT B C2 1
ATOM 135 O O2 . DT B 2 1 ? 1.441 16.948 34.130 1.00 26.80 ? 7 DT B O2 1
ATOM 136 N N3 . DT B 2 1 ? 2.008 14.798 34.480 1.00 24.81 ? 7 DT B N3 1
ATOM 137 C C4 . DT B 2 1 ? 2.889 13.746 34.656 1.00 24.67 ? 7 DT B C4 1
ATOM 138 O O4 . DT B 2 1 ? 2.451 12.625 34.846 1.00 23.80 ? 7 DT B O4 1
ATOM 139 C C5 . DT B 2 1 ? 4.282 14.090 34.605 1.00 24.26 ? 7 DT B C5 1
ATOM 140 C C7 . DT B 2 1 ? 5.320 13.021 34.804 1.00 27.89 ? 7 DT B C7 1
ATOM 141 C C6 . DT B 2 1 ? 4.589 15.372 34.392 1.00 24.95 ? 7 DT B C6 1
ATOM 142 P P . DT B 2 2 ? 5.063 21.612 35.391 1.00 35.77 ? 8 DT B P 1
ATOM 143 O OP1 . DT B 2 2 ? 4.905 23.031 34.947 1.00 37.03 ? 8 DT B OP1 1
ATOM 144 O OP2 . DT B 2 2 ? 6.102 21.187 36.330 1.00 34.18 ? 8 DT B OP2 1
ATOM 145 O "O5'" . DT B 2 2 ? 3.649 21.216 35.918 1.00 33.24 ? 8 DT B "O5'" 1
ATOM 146 C "C5'" . DT B 2 2 ? 2.562 21.697 35.204 1.00 31.38 ? 8 DT B "C5'" 1
ATOM 147 C "C4'" . DT B 2 2 ? 1.297 21.190 35.810 1.00 30.57 ? 8 DT B "C4'" 1
ATOM 148 O "O4'" . DT B 2 2 ? 1.333 19.758 35.891 1.00 29.02 ? 8 DT B "O4'" 1
ATOM 149 C "C3'" . DT B 2 2 ? 1.067 21.708 37.231 1.00 32.06 ? 8 DT B "C3'" 1
ATOM 150 O "O3'" . DT B 2 2 ? -0.216 22.345 37.164 1.00 34.65 ? 8 DT B "O3'" 1
ATOM 151 C "C2'" . DT B 2 2 ? 1.180 20.470 38.114 1.00 29.78 ? 8 DT B "C2'" 1
ATOM 152 C "C1'" . DT B 2 2 ? 0.778 19.383 37.129 1.00 27.33 ? 8 DT B "C1'" 1
ATOM 153 N N1 . DT B 2 2 ? 1.262 18.037 37.409 1.00 26.34 ? 8 DT B N1 1
ATOM 154 C C2 . DT B 2 2 ? 0.315 17.051 37.461 1.00 23.59 ? 8 DT B C2 1
ATOM 155 O O2 . DT B 2 2 ? -0.880 17.244 37.304 1.00 26.86 ? 8 DT B O2 1
ATOM 156 N N3 . DT B 2 2 ? 0.816 15.826 37.702 1.00 24.04 ? 8 DT B N3 1
ATOM 157 C C4 . DT B 2 2 ? 2.147 15.475 37.892 1.00 24.98 ? 8 DT B C4 1
ATOM 158 O O4 . DT B 2 2 ? 2.420 14.320 38.084 1.00 23.51 ? 8 DT B O4 1
ATOM 159 C C5 . DT B 2 2 ? 3.110 16.552 37.834 1.00 26.01 ? 8 DT B C5 1
ATOM 160 C C7 . DT B 2 2 ? 4.578 16.258 38.046 1.00 27.89 ? 8 DT B C7 1
ATOM 161 C C6 . DT B 2 2 ? 2.624 17.771 37.596 1.00 25.97 ? 8 DT B C6 1
HETATM 162 P P . B7C B 2 3 ? -0.815 23.093 38.430 1.00 37.13 ? 9 B7C B P 1
HETATM 163 O OP1 . B7C B 2 3 ? -1.816 24.116 37.932 1.00 35.48 ? 9 B7C B OP1 1
HETATM 164 O OP2 . B7C B 2 3 ? 0.255 23.451 39.395 1.00 35.39 ? 9 B7C B OP2 1
HETATM 165 O "O5'" . B7C B 2 3 ? -1.660 21.897 38.997 1.00 34.05 ? 9 B7C B "O5'" 1
HETATM 166 N N1 . B7C B 2 3 ? -1.824 17.832 40.605 1.00 25.79 ? 9 B7C B N1 1
HETATM 167 C C6 . B7C B 2 3 ? -0.628 18.475 40.670 1.00 28.17 ? 9 B7C B C6 1
HETATM 168 C C2 . B7C B 2 3 ? -1.872 16.551 40.750 1.00 26.21 ? 9 B7C B C2 1
HETATM 169 O O2 . B7C B 2 3 ? -2.931 15.947 40.716 1.00 27.76 ? 9 B7C B O2 1
HETATM 170 N N3 . B7C B 2 3 ? -0.667 15.880 40.957 1.00 29.29 ? 9 B7C B N3 1
HETATM 171 C C4 . B7C B 2 3 ? 0.509 16.536 41.013 1.00 30.43 ? 9 B7C B C4 1
HETATM 172 N N4 . B7C B 2 3 ? 1.688 15.742 41.230 1.00 31.33 ? 9 B7C B N4 1
HETATM 173 C C5 . B7C B 2 3 ? 0.538 17.807 40.853 1.00 30.67 ? 9 B7C B C5 1
HETATM 174 C C7 . B7C B 2 3 ? 1.697 18.502 41.020 1.00 30.13 ? 9 B7C B C7 1
HETATM 175 C C8 . B7C B 2 3 ? 2.993 17.733 41.079 1.00 30.14 ? 9 B7C B C8 1
HETATM 176 C C9 . B7C B 2 3 ? 2.926 16.315 41.651 1.00 30.76 ? 9 B7C B C9 1
HETATM 177 C "C2'" . B7C B 2 3 ? -3.347 19.840 41.281 1.00 27.79 ? 9 B7C B "C2'" 1
HETATM 178 C "C5'" . B7C B 2 3 ? -2.838 21.553 38.276 1.00 31.47 ? 9 B7C B "C5'" 1
HETATM 179 C "C4'" . B7C B 2 3 ? -3.583 20.448 38.948 1.00 28.06 ? 9 B7C B "C4'" 1
HETATM 180 O "O4'" . B7C B 2 3 ? -2.709 19.341 39.100 1.00 26.23 ? 9 B7C B "O4'" 1
HETATM 181 C "C1'" . B7C B 2 3 ? -3.004 18.700 40.316 1.00 27.57 ? 9 B7C B "C1'" 1
HETATM 182 C "C3'" . B7C B 2 3 ? -4.038 20.825 40.340 1.00 28.12 ? 9 B7C B "C3'" 1
HETATM 183 O "O3'" . B7C B 2 3 ? -5.412 20.601 40.235 1.00 27.73 ? 9 B7C B "O3'" 1
ATOM 184 P P . DG B 2 4 ? -6.464 21.061 41.358 1.00 30.53 ? 10 DG B P 1
ATOM 185 O OP1 . DG B 2 4 ? -7.816 20.949 40.767 1.00 30.66 ? 10 DG B OP1 1
ATOM 186 O OP2 . DG B 2 4 ? -5.921 22.293 41.958 1.00 26.16 ? 10 DG B OP2 1
ATOM 187 O "O5'" . DG B 2 4 ? -6.380 19.989 42.496 1.00 29.75 ? 10 DG B "O5'" 1
ATOM 188 C "C5'" . DG B 2 4 ? -7.134 18.800 42.428 1.00 27.04 ? 10 DG B "C5'" 1
ATOM 189 C "C4'" . DG B 2 4 ? -6.732 17.904 43.566 1.00 24.43 ? 10 DG B "C4'" 1
ATOM 190 O "O4'" . DG B 2 4 ? -5.352 17.568 43.371 1.00 24.67 ? 10 DG B "O4'" 1
ATOM 191 C "C3'" . DG B 2 4 ? -6.798 18.592 44.941 1.00 26.57 ? 10 DG B "C3'" 1
ATOM 192 O "O3'" . DG B 2 4 ? -7.326 17.702 45.898 1.00 25.97 ? 10 DG B "O3'" 1
ATOM 193 C "C2'" . DG B 2 4 ? -5.341 18.800 45.310 1.00 24.32 ? 10 DG B "C2'" 1
ATOM 194 C "C1'" . DG B 2 4 ? -4.785 17.570 44.648 1.00 22.19 ? 10 DG B "C1'" 1
ATOM 195 N N9 . DG B 2 4 ? -3.355 17.480 44.480 1.00 22.29 ? 10 DG B N9 1
ATOM 196 C C8 . DG B 2 4 ? -2.443 18.483 44.277 1.00 21.96 ? 10 DG B C8 1
ATOM 197 N N7 . DG B 2 4 ? -1.225 18.038 44.153 1.00 21.73 ? 10 DG B N7 1
ATOM 198 C C5 . DG B 2 4 ? -1.355 16.663 44.289 1.00 21.39 ? 10 DG B C5 1
ATOM 199 C C6 . DG B 2 4 ? -0.374 15.629 44.254 1.00 21.31 ? 10 DG B C6 1
ATOM 200 O O6 . DG B 2 4 ? 0.841 15.727 44.090 1.00 21.46 ? 10 DG B O6 1
ATOM 201 N N1 . DG B 2 4 ? -0.950 14.368 44.441 1.00 21.12 ? 10 DG B N1 1
ATOM 202 C C2 . DG B 2 4 ? -2.305 14.136 44.646 1.00 20.92 ? 10 DG B C2 1
ATOM 203 N N2 . DG B 2 4 ? -2.710 12.877 44.837 1.00 20.95 ? 10 DG B N2 1
ATOM 204 N N3 . DG B 2 4 ? -3.209 15.090 44.674 1.00 19.72 ? 10 DG B N3 1
ATOM 205 C C4 . DG B 2 4 ? -2.668 16.315 44.486 1.00 21.25 ? 10 DG B C4 1
ATOM 206 P P . DC B 2 5 ? -8.727 17.995 46.567 1.00 24.58 ? 11 DC B P 1
ATOM 207 O OP1 . DC B 2 5 ? -9.712 18.148 45.519 1.00 25.87 ? 11 DC B OP1 1
ATOM 208 O OP2 . DC B 2 5 ? -8.580 19.031 47.561 1.00 23.31 ? 11 DC B OP2 1
ATOM 209 O "O5'" . DC B 2 5 ? -8.911 16.628 47.341 1.00 22.99 ? 11 DC B "O5'" 1
ATOM 210 C "C5'" . DC B 2 5 ? -9.229 15.434 46.642 1.00 23.02 ? 11 DC B "C5'" 1
ATOM 211 C "C4'" . DC B 2 5 ? -8.618 14.247 47.343 1.00 18.97 ? 11 DC B "C4'" 1
ATOM 212 O "O4'" . DC B 2 5 ? -7.195 14.224 47.054 1.00 21.58 ? 11 DC B "O4'" 1
ATOM 213 C "C3'" . DC B 2 5 ? -8.757 14.184 48.874 1.00 18.22 ? 11 DC B "C3'" 1
ATOM 214 O "O3'" . DC B 2 5 ? -8.926 12.805 49.202 1.00 19.16 ? 11 DC B "O3'" 1
ATOM 215 C "C2'" . DC B 2 5 ? -7.408 14.689 49.364 1.00 17.02 ? 11 DC B "C2'" 1
ATOM 216 C "C1'" . DC B 2 5 ? -6.454 14.168 48.282 1.00 21.45 ? 11 DC B "C1'" 1
ATOM 217 N N1 . DC B 2 5 ? -5.133 14.884 48.145 1.00 21.80 ? 11 DC B N1 1
ATOM 218 C C2 . DC B 2 5 ? -3.940 14.137 48.046 1.00 23.45 ? 11 DC B C2 1
ATOM 219 O O2 . DC B 2 5 ? -4.005 12.918 48.022 1.00 23.33 ? 11 DC B O2 1
ATOM 220 N N3 . DC B 2 5 ? -2.741 14.772 47.971 1.00 22.95 ? 11 DC B N3 1
ATOM 221 C C4 . DC B 2 5 ? -2.696 16.086 47.972 1.00 20.07 ? 11 DC B C4 1
ATOM 222 N N4 . DC B 2 5 ? -1.481 16.659 47.897 1.00 19.59 ? 11 DC B N4 1
ATOM 223 C C5 . DC B 2 5 ? -3.880 16.877 48.054 1.00 18.75 ? 11 DC B C5 1
ATOM 224 C C6 . DC B 2 5 ? -5.061 16.243 48.142 1.00 20.14 ? 11 DC B C6 1
ATOM 225 P P . DG B 2 6 ? -9.632 12.363 50.576 1.00 21.52 ? 12 DG B P 1
ATOM 226 O OP1 . DG B 2 6 ? -9.791 10.909 50.568 1.00 23.35 ? 12 DG B OP1 1
ATOM 227 O OP2 . DG B 2 6 ? -10.829 13.193 50.647 1.00 22.65 ? 12 DG B OP2 1
ATOM 228 O "O5'" . DG B 2 6 ? -8.686 12.831 51.792 1.00 22.97 ? 12 DG B "O5'" 1
ATOM 229 C "C5'" . DG B 2 6 ? -7.471 12.180 52.184 1.00 17.66 ? 12 DG B "C5'" 1
ATOM 230 C "C4'" . DG B 2 6 ? -6.845 12.880 53.380 1.00 19.30 ? 12 DG B "C4'" 1
ATOM 231 O "O4'" . DG B 2 6 ? -6.547 14.294 53.162 1.00 19.06 ? 12 DG B "O4'" 1
ATOM 232 C "C3'" . DG B 2 6 ? -7.589 12.770 54.708 1.00 21.07 ? 12 DG B "C3'" 1
ATOM 233 O "O3'" . DG B 2 6 ? -6.969 11.801 55.568 1.00 27.89 ? 12 DG B "O3'" 1
ATOM 234 C "C2'" . DG B 2 6 ? -7.583 14.188 55.257 1.00 17.23 ? 12 DG B "C2'" 1
ATOM 235 C "C1'" . DG B 2 6 ? -7.198 15.119 54.089 1.00 20.79 ? 12 DG B "C1'" 1
ATOM 236 N N9 . DG B 2 6 ? -8.307 15.736 53.347 1.00 20.33 ? 12 DG B N9 1
ATOM 237 C C8 . DG B 2 6 ? -9.643 15.495 53.522 1.00 20.42 ? 12 DG B C8 1
ATOM 238 N N7 . DG B 2 6 ? -10.395 16.140 52.678 1.00 22.55 ? 12 DG B N7 1
ATOM 239 C C5 . DG B 2 6 ? -9.503 16.867 51.912 1.00 21.19 ? 12 DG B C5 1
ATOM 240 C C6 . DG B 2 6 ? -9.747 17.750 50.844 1.00 23.84 ? 12 DG B C6 1
ATOM 241 O O6 . DG B 2 6 ? -10.820 18.056 50.370 1.00 23.53 ? 12 DG B O6 1
ATOM 242 N N1 . DG B 2 6 ? -8.569 18.286 50.316 1.00 23.19 ? 12 DG B N1 1
ATOM 243 C C2 . DG B 2 6 ? -7.321 17.989 50.783 1.00 22.01 ? 12 DG B C2 1
ATOM 244 N N2 . DG B 2 6 ? -6.268 18.577 50.177 1.00 19.81 ? 12 DG B N2 1
ATOM 245 N N3 . DG B 2 6 ? -7.092 17.154 51.794 1.00 20.98 ? 12 DG B N3 1
ATOM 246 C C4 . DG B 2 6 ? -8.219 16.636 52.303 1.00 20.65 ? 12 DG B C4 1
HETATM 247 NA NA . NA C 3 . ? -10.231 9.393 49.500 0.50 5.49 ? 1 NA B NA 1
HETATM 248 O O . HOH D 4 . ? 6.942 11.331 45.674 1.00 34.98 ? 7 HOH A O 1
HETATM 249 O O . HOH D 4 . ? 4.287 7.278 42.619 1.00 34.68 ? 8 HOH A O 1
HETATM 250 O O . HOH D 4 . ? -0.333 8.601 37.039 1.00 35.19 ? 9 HOH A O 1
HETATM 251 O O . HOH D 4 . ? 5.651 13.557 43.073 1.00 33.73 ? 10 HOH A O 1
HETATM 252 O O . HOH D 4 . ? -0.996 9.090 34.292 1.00 31.02 ? 11 HOH A O 1
HETATM 253 O O . HOH D 4 . ? 3.397 11.504 40.530 1.00 35.01 ? 12 HOH A O 1
HETATM 254 O O . HOH D 4 . ? 2.768 11.598 51.398 1.00 20.31 ? 16 HOH A O 1
HETATM 255 O O . HOH D 4 . ? 7.810 10.783 40.745 1.00 43.57 ? 17 HOH A O 1
HETATM 256 O O . HOH D 4 . ? -9.304 4.867 33.330 1.00 46.34 ? 27 HOH A O 1
HETATM 257 O O . HOH D 4 . ? -8.123 8.123 35.215 1.00 41.34 ? 28 HOH A O 1
HETATM 258 O O . HOH D 4 . ? -9.244 9.089 43.021 1.00 27.15 ? 29 HOH A O 1
HETATM 259 O O . HOH D 4 . ? -7.240 6.360 43.231 1.00 24.92 ? 30 HOH A O 1
HETATM 260 O O . HOH D 4 . ? 9.413 3.785 48.325 1.00 45.21 ? 31 HOH A O 1
HETATM 261 O O . HOH D 4 . ? -7.141 4.484 41.499 1.00 43.38 ? 34 HOH A O 1
HETATM 262 O O . HOH D 4 . ? -5.361 2.810 42.281 1.00 41.59 ? 35 HOH A O 1
HETATM 263 O O . HOH D 4 . ? -3.206 1.683 41.075 1.00 51.43 ? 36 HOH A O 1
HETATM 264 O O . HOH D 4 . ? -4.850 1.294 37.298 1.00 46.62 ? 37 HOH A O 1
HETATM 265 O O . HOH E 4 . ? 9.812 15.136 44.024 1.00 50.44 ? 3 HOH B O 1
HETATM 266 O O . HOH E 4 . ? 6.536 16.569 41.504 1.00 37.90 ? 4 HOH B O 1
HETATM 267 O O . HOH E 4 . ? 7.610 15.954 35.559 1.00 31.40 ? 5 HOH B O 1
HETATM 268 O O . HOH E 4 . ? -9.849 25.291 44.503 1.00 44.84 ? 13 HOH B O 1
HETATM 269 O O . HOH E 4 . ? -2.787 21.765 44.927 1.00 33.80 ? 14 HOH B O 1
HETATM 270 O O . HOH E 4 . ? 0.618 20.150 43.424 1.00 32.29 ? 15 HOH B O 1
HETATM 271 O O . HOH E 4 . ? 5.281 7.644 38.180 1.00 40.95 ? 16 HOH B O 1
HETATM 272 O O . HOH E 4 . ? 11.098 14.468 37.689 1.00 43.58 ? 17 HOH B O 1
HETATM 273 O O . HOH E 4 . ? 9.942 20.779 33.462 1.00 41.31 ? 18 HOH B O 1
HETATM 274 O O . HOH E 4 . ? -2.450 24.358 35.567 1.00 47.89 ? 19 HOH B O 1
HETATM 275 O O . HOH E 4 . ? -0.044 25.957 41.671 1.00 45.89 ? 20 HOH B O 1
HETATM 276 O O . HOH E 4 . ? 3.273 25.746 41.195 1.00 47.38 ? 21 HOH B O 1
HETATM 277 O O . HOH E 4 . ? 4.891 19.867 38.912 1.00 34.55 ? 22 HOH B O 1
HETATM 278 O O . HOH E 4 . ? 3.897 21.788 40.586 1.00 44.66 ? 23 HOH B O 1
HETATM 279 O O . HOH E 4 . ? 7.690 21.575 41.774 1.00 42.74 ? 24 HOH B O 1
HETATM 280 O O . HOH E 4 . ? -3.180 18.113 36.238 1.00 26.06 ? 25 HOH B O 1
HETATM 281 O O . HOH E 4 . ? -5.161 15.546 39.311 1.00 28.17 ? 26 HOH B O 1
HETATM 282 O O . HOH E 4 . ? 3.060 10.214 35.337 1.00 32.44 ? 27 HOH B O 1
HETATM 283 O O . HOH E 4 . ? -12.849 13.271 48.645 1.00 43.99 ? 32 HOH B O 1
HETATM 284 O O . HOH E 4 . ? 2.168 28.145 41.388 1.00 52.16 ? 33 HOH B O 1
HETATM 285 O O . HOH E 4 . ? -6.687 20.835 48.269 1.00 23.71 ? 38 HOH B O 1
HETATM 286 O O . HOH E 4 . ? -11.430 21.872 46.256 1.00 43.65 ? 39 HOH B O 1
HETATM 287 O O . HOH E 4 . ? -8.747 22.209 45.185 1.00 36.21 ? 40 HOH B O 1
HETATM 288 O O . HOH E 4 . ? -5.658 22.444 46.372 1.00 31.47 ? 41 HOH B O 1
HETATM 289 O O . HOH E 4 . ? -6.556 23.861 37.704 1.00 44.67 ? 42 HOH B O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC DC A . n
A 1 2 DG 2 2 2 DG DG A . n
A 1 3 DC 3 3 3 DC DC A . n
A 1 4 DG 4 4 4 DG DG A . n
A 1 5 DA 5 5 5 DA DA A . n
A 1 6 DA 6 6 6 DA DA A . n
B 2 1 DT 1 7 7 DT DT B . n
B 2 2 DT 2 8 8 DT DT B . n
B 2 3 B7C 3 9 9 B7C B7C B . n
B 2 4 DG 4 10 10 DG DG B . n
B 2 5 DC 5 11 11 DC DC B . n
B 2 6 DG 6 12 12 DG DG B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NA 1 1 1 NA NA B .
D 4 HOH 1 7 1 HOH HOH A .
D 4 HOH 2 8 8 HOH HOH A .
D 4 HOH 3 9 9 HOH HOH A .
D 4 HOH 4 10 2 HOH HOH A .
D 4 HOH 5 11 11 HOH HOH A .
D 4 HOH 6 12 12 HOH HOH A .
D 4 HOH 7 16 16 HOH HOH A .
D 4 HOH 8 17 6 HOH HOH A .
D 4 HOH 9 27 27 HOH HOH A .
D 4 HOH 10 28 28 HOH HOH A .
D 4 HOH 11 29 29 HOH HOH A .
D 4 HOH 12 30 30 HOH HOH A .
D 4 HOH 13 31 31 HOH HOH A .
D 4 HOH 14 34 34 HOH HOH A .
D 4 HOH 15 35 35 HOH HOH A .
D 4 HOH 16 36 36 HOH HOH A .
D 4 HOH 17 37 37 HOH HOH A .
E 4 HOH 1 3 3 HOH HOH B .
E 4 HOH 2 4 4 HOH HOH B .
E 4 HOH 3 5 5 HOH HOH B .
E 4 HOH 4 13 13 HOH HOH B .
E 4 HOH 5 14 14 HOH HOH B .
E 4 HOH 6 15 15 HOH HOH B .
E 4 HOH 7 16 7 HOH HOH B .
E 4 HOH 8 17 17 HOH HOH B .
E 4 HOH 9 18 18 HOH HOH B .
E 4 HOH 10 19 19 HOH HOH B .
E 4 HOH 11 20 20 HOH HOH B .
E 4 HOH 12 21 21 HOH HOH B .
E 4 HOH 13 22 22 HOH HOH B .
E 4 HOH 14 23 23 HOH HOH B .
E 4 HOH 15 24 24 HOH HOH B .
E 4 HOH 16 25 25 HOH HOH B .
E 4 HOH 17 26 26 HOH HOH B .
E 4 HOH 18 27 10 HOH HOH B .
E 4 HOH 19 32 32 HOH HOH B .
E 4 HOH 20 33 33 HOH HOH B .
E 4 HOH 21 38 38 HOH HOH B .
E 4 HOH 22 39 39 HOH HOH B .
E 4 HOH 23 40 40 HOH HOH B .
E 4 HOH 24 41 41 HOH HOH B .
E 4 HOH 25 42 42 HOH HOH B .
#
_pdbx_struct_mod_residue.id 1
_pdbx_struct_mod_residue.label_asym_id B
_pdbx_struct_mod_residue.label_comp_id B7C
_pdbx_struct_mod_residue.label_seq_id 3
_pdbx_struct_mod_residue.auth_asym_id B
_pdbx_struct_mod_residue.auth_comp_id B7C
_pdbx_struct_mod_residue.auth_seq_id 9
_pdbx_struct_mod_residue.PDB_ins_code ?
_pdbx_struct_mod_residue.parent_comp_id DC
_pdbx_struct_mod_residue.details ?
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 460 ?
1 MORE -3 ?
1 'SSA (A^2)' 2660 ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id B
_pdbx_struct_special_symmetry.auth_comp_id NA
_pdbx_struct_special_symmetry.auth_seq_id 1
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id C
_pdbx_struct_special_symmetry.label_comp_id NA
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2010-03-31
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2023-11-01
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
5 3 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp_atom
2 3 'Structure model' chem_comp_bond
3 3 'Structure model' database_2
4 3 'Structure model' pdbx_initial_refinement_model
5 3 'Structure model' struct_conn
6 3 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
4 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
5 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
6 3 'Structure model' '_struct_conn.ptnr1_label_asym_id'
7 3 'Structure model' '_struct_conn.ptnr1_label_atom_id'
8 3 'Structure model' '_struct_conn.ptnr1_label_comp_id'
9 3 'Structure model' '_struct_conn.ptnr1_label_seq_id'
10 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
11 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
12 3 'Structure model' '_struct_conn.ptnr2_label_asym_id'
13 3 'Structure model' '_struct_conn.ptnr2_label_atom_id'
14 3 'Structure model' '_struct_conn.ptnr2_label_comp_id'
15 3 'Structure model' '_struct_conn.ptnr2_label_seq_id'
16 3 'Structure model' '_struct_site.pdbx_auth_asym_id'
17 3 'Structure model' '_struct_site.pdbx_auth_comp_id'
18 3 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
HKL-2000 'data collection' . ? 1
AMoRE phasing . ? 2
REFMAC refinement 5.2.0019 ? 3
HKL-2000 'data reduction' . ? 4
HKL-2000 'data scaling' . ? 5
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 "O3'"
_pdbx_validate_symm_contact.auth_asym_id_1 A
_pdbx_validate_symm_contact.auth_comp_id_1 DA
_pdbx_validate_symm_contact.auth_seq_id_1 6
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 P
_pdbx_validate_symm_contact.auth_asym_id_2 B
_pdbx_validate_symm_contact.auth_comp_id_2 DT
_pdbx_validate_symm_contact.auth_seq_id_2 7
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 5_555
_pdbx_validate_symm_contact.dist 1.65
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 101.49 108.00 -6.51 0.70 N
2 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.31 108.30 2.01 0.30 N
3 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.84 108.30 2.54 0.30 N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
B7C OP3 O N N 1
B7C P P N N 2
B7C OP1 O N N 3
B7C OP2 O N N 4
B7C "O5'" O N N 5
B7C N1 N N N 6
B7C C6 C N N 7
B7C C2 C N N 8
B7C O2 O N N 9
B7C N3 N N N 10
B7C C4 C N N 11
B7C N4 N N N 12
B7C C5 C N N 13
B7C C7 C N N 14
B7C C8 C N N 15
B7C C9 C N N 16
B7C "C2'" C N N 17
B7C "C5'" C N N 18
B7C "C4'" C N R 19
B7C "O4'" O N N 20
B7C "C1'" C N R 21
B7C "C3'" C N S 22
B7C "O3'" O N N 23
B7C HOP3 H N N 24
B7C HOP1 H N N 25
B7C H6 H N N 26
B7C HN4 H N N 27
B7C H7 H N N 28
B7C H8 H N N 29
B7C H9 H N N 30
B7C H9A H N N 31
B7C "H2'" H N N 32
B7C "H2'A" H N N 33
B7C "H5'" H N N 34
B7C "H5'A" H N N 35
B7C "H4'" H N N 36
B7C "H1'" H N N 37
B7C "H3'" H N N 38
B7C "HO3'" H N N 39
DA OP3 O N N 40
DA P P N N 41
DA OP1 O N N 42
DA OP2 O N N 43
DA "O5'" O N N 44
DA "C5'" C N N 45
DA "C4'" C N R 46
DA "O4'" O N N 47
DA "C3'" C N S 48
DA "O3'" O N N 49
DA "C2'" C N N 50
DA "C1'" C N R 51
DA N9 N Y N 52
DA C8 C Y N 53
DA N7 N Y N 54
DA C5 C Y N 55
DA C6 C Y N 56
DA N6 N N N 57
DA N1 N Y N 58
DA C2 C Y N 59
DA N3 N Y N 60
DA C4 C Y N 61
DA HOP3 H N N 62
DA HOP2 H N N 63
DA "H5'" H N N 64
DA "H5''" H N N 65
DA "H4'" H N N 66
DA "H3'" H N N 67
DA "HO3'" H N N 68
DA "H2'" H N N 69
DA "H2''" H N N 70
DA "H1'" H N N 71
DA H8 H N N 72
DA H61 H N N 73
DA H62 H N N 74
DA H2 H N N 75
DC OP3 O N N 76
DC P P N N 77
DC OP1 O N N 78
DC OP2 O N N 79
DC "O5'" O N N 80
DC "C5'" C N N 81
DC "C4'" C N R 82
DC "O4'" O N N 83
DC "C3'" C N S 84
DC "O3'" O N N 85
DC "C2'" C N N 86
DC "C1'" C N R 87
DC N1 N N N 88
DC C2 C N N 89
DC O2 O N N 90
DC N3 N N N 91
DC C4 C N N 92
DC N4 N N N 93
DC C5 C N N 94
DC C6 C N N 95
DC HOP3 H N N 96
DC HOP2 H N N 97
DC "H5'" H N N 98
DC "H5''" H N N 99
DC "H4'" H N N 100
DC "H3'" H N N 101
DC "HO3'" H N N 102
DC "H2'" H N N 103
DC "H2''" H N N 104
DC "H1'" H N N 105
DC H41 H N N 106
DC H42 H N N 107
DC H5 H N N 108
DC H6 H N N 109
DG OP3 O N N 110
DG P P N N 111
DG OP1 O N N 112
DG OP2 O N N 113
DG "O5'" O N N 114
DG "C5'" C N N 115
DG "C4'" C N R 116
DG "O4'" O N N 117
DG "C3'" C N S 118
DG "O3'" O N N 119
DG "C2'" C N N 120
DG "C1'" C N R 121
DG N9 N Y N 122
DG C8 C Y N 123
DG N7 N Y N 124
DG C5 C Y N 125
DG C6 C N N 126
DG O6 O N N 127
DG N1 N N N 128
DG C2 C N N 129
DG N2 N N N 130
DG N3 N N N 131
DG C4 C Y N 132
DG HOP3 H N N 133
DG HOP2 H N N 134
DG "H5'" H N N 135
DG "H5''" H N N 136
DG "H4'" H N N 137
DG "H3'" H N N 138
DG "HO3'" H N N 139
DG "H2'" H N N 140
DG "H2''" H N N 141
DG "H1'" H N N 142
DG H8 H N N 143
DG H1 H N N 144
DG H21 H N N 145
DG H22 H N N 146
DT OP3 O N N 147
DT P P N N 148
DT OP1 O N N 149
DT OP2 O N N 150
DT "O5'" O N N 151
DT "C5'" C N N 152
DT "C4'" C N R 153
DT "O4'" O N N 154
DT "C3'" C N S 155
DT "O3'" O N N 156
DT "C2'" C N N 157
DT "C1'" C N R 158
DT N1 N N N 159
DT C2 C N N 160
DT O2 O N N 161
DT N3 N N N 162
DT C4 C N N 163
DT O4 O N N 164
DT C5 C N N 165
DT C7 C N N 166
DT C6 C N N 167
DT HOP3 H N N 168
DT HOP2 H N N 169
DT "H5'" H N N 170
DT "H5''" H N N 171
DT "H4'" H N N 172
DT "H3'" H N N 173
DT "HO3'" H N N 174
DT "H2'" H N N 175
DT "H2''" H N N 176
DT "H1'" H N N 177
DT H3 H N N 178
DT H71 H N N 179
DT H72 H N N 180
DT H73 H N N 181
DT H6 H N N 182
HOH O O N N 183
HOH H1 H N N 184
HOH H2 H N N 185
NA NA NA N N 186
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B7C OP3 P sing N N 1
B7C P OP1 sing N N 2
B7C P OP2 doub N N 3
B7C P "O5'" sing N N 4
B7C "O5'" "C5'" sing N N 5
B7C N1 C6 sing N N 6
B7C N1 C2 sing N N 7
B7C N1 "C1'" sing N N 8
B7C C6 C5 doub N N 9
B7C C2 O2 doub N N 10
B7C C2 N3 sing N N 11
B7C N3 C4 doub N N 12
B7C C4 N4 sing N N 13
B7C C4 C5 sing N N 14
B7C N4 C9 sing N N 15
B7C C5 C7 sing N N 16
B7C C7 C8 doub N N 17
B7C C8 C9 sing N N 18
B7C "C2'" "C1'" sing N N 19
B7C "C2'" "C3'" sing N N 20
B7C "C5'" "C4'" sing N N 21
B7C "C4'" "O4'" sing N N 22
B7C "C4'" "C3'" sing N N 23
B7C "O4'" "C1'" sing N N 24
B7C "C3'" "O3'" sing N N 25
B7C OP3 HOP3 sing N N 26
B7C OP1 HOP1 sing N N 27
B7C C6 H6 sing N N 28
B7C N4 HN4 sing N N 29
B7C C7 H7 sing N N 30
B7C C8 H8 sing N N 31
B7C C9 H9 sing N N 32
B7C C9 H9A sing N N 33
B7C "C2'" "H2'" sing N N 34
B7C "C2'" "H2'A" sing N N 35
B7C "C5'" "H5'" sing N N 36
B7C "C5'" "H5'A" sing N N 37
B7C "C4'" "H4'" sing N N 38
B7C "C1'" "H1'" sing N N 39
B7C "C3'" "H3'" sing N N 40
B7C "O3'" "HO3'" sing N N 41
DA OP3 P sing N N 42
DA OP3 HOP3 sing N N 43
DA P OP1 doub N N 44
DA P OP2 sing N N 45
DA P "O5'" sing N N 46
DA OP2 HOP2 sing N N 47
DA "O5'" "C5'" sing N N 48
DA "C5'" "C4'" sing N N 49
DA "C5'" "H5'" sing N N 50
DA "C5'" "H5''" sing N N 51
DA "C4'" "O4'" sing N N 52
DA "C4'" "C3'" sing N N 53
DA "C4'" "H4'" sing N N 54
DA "O4'" "C1'" sing N N 55
DA "C3'" "O3'" sing N N 56
DA "C3'" "C2'" sing N N 57
DA "C3'" "H3'" sing N N 58
DA "O3'" "HO3'" sing N N 59
DA "C2'" "C1'" sing N N 60
DA "C2'" "H2'" sing N N 61
DA "C2'" "H2''" sing N N 62
DA "C1'" N9 sing N N 63
DA "C1'" "H1'" sing N N 64
DA N9 C8 sing Y N 65
DA N9 C4 sing Y N 66
DA C8 N7 doub Y N 67
DA C8 H8 sing N N 68
DA N7 C5 sing Y N 69
DA C5 C6 sing Y N 70
DA C5 C4 doub Y N 71
DA C6 N6 sing N N 72
DA C6 N1 doub Y N 73
DA N6 H61 sing N N 74
DA N6 H62 sing N N 75
DA N1 C2 sing Y N 76
DA C2 N3 doub Y N 77
DA C2 H2 sing N N 78
DA N3 C4 sing Y N 79
DC OP3 P sing N N 80
DC OP3 HOP3 sing N N 81
DC P OP1 doub N N 82
DC P OP2 sing N N 83
DC P "O5'" sing N N 84
DC OP2 HOP2 sing N N 85
DC "O5'" "C5'" sing N N 86
DC "C5'" "C4'" sing N N 87
DC "C5'" "H5'" sing N N 88
DC "C5'" "H5''" sing N N 89
DC "C4'" "O4'" sing N N 90
DC "C4'" "C3'" sing N N 91
DC "C4'" "H4'" sing N N 92
DC "O4'" "C1'" sing N N 93
DC "C3'" "O3'" sing N N 94
DC "C3'" "C2'" sing N N 95
DC "C3'" "H3'" sing N N 96
DC "O3'" "HO3'" sing N N 97
DC "C2'" "C1'" sing N N 98
DC "C2'" "H2'" sing N N 99
DC "C2'" "H2''" sing N N 100
DC "C1'" N1 sing N N 101
DC "C1'" "H1'" sing N N 102
DC N1 C2 sing N N 103
DC N1 C6 sing N N 104
DC C2 O2 doub N N 105
DC C2 N3 sing N N 106
DC N3 C4 doub N N 107
DC C4 N4 sing N N 108
DC C4 C5 sing N N 109
DC N4 H41 sing N N 110
DC N4 H42 sing N N 111
DC C5 C6 doub N N 112
DC C5 H5 sing N N 113
DC C6 H6 sing N N 114
DG OP3 P sing N N 115
DG OP3 HOP3 sing N N 116
DG P OP1 doub N N 117
DG P OP2 sing N N 118
DG P "O5'" sing N N 119
DG OP2 HOP2 sing N N 120
DG "O5'" "C5'" sing N N 121
DG "C5'" "C4'" sing N N 122
DG "C5'" "H5'" sing N N 123
DG "C5'" "H5''" sing N N 124
DG "C4'" "O4'" sing N N 125
DG "C4'" "C3'" sing N N 126
DG "C4'" "H4'" sing N N 127
DG "O4'" "C1'" sing N N 128
DG "C3'" "O3'" sing N N 129
DG "C3'" "C2'" sing N N 130
DG "C3'" "H3'" sing N N 131
DG "O3'" "HO3'" sing N N 132
DG "C2'" "C1'" sing N N 133
DG "C2'" "H2'" sing N N 134
DG "C2'" "H2''" sing N N 135
DG "C1'" N9 sing N N 136
DG "C1'" "H1'" sing N N 137
DG N9 C8 sing Y N 138
DG N9 C4 sing Y N 139
DG C8 N7 doub Y N 140
DG C8 H8 sing N N 141
DG N7 C5 sing Y N 142
DG C5 C6 sing N N 143
DG C5 C4 doub Y N 144
DG C6 O6 doub N N 145
DG C6 N1 sing N N 146
DG N1 C2 sing N N 147
DG N1 H1 sing N N 148
DG C2 N2 sing N N 149
DG C2 N3 doub N N 150
DG N2 H21 sing N N 151
DG N2 H22 sing N N 152
DG N3 C4 sing N N 153
DT OP3 P sing N N 154
DT OP3 HOP3 sing N N 155
DT P OP1 doub N N 156
DT P OP2 sing N N 157
DT P "O5'" sing N N 158
DT OP2 HOP2 sing N N 159
DT "O5'" "C5'" sing N N 160
DT "C5'" "C4'" sing N N 161
DT "C5'" "H5'" sing N N 162
DT "C5'" "H5''" sing N N 163
DT "C4'" "O4'" sing N N 164
DT "C4'" "C3'" sing N N 165
DT "C4'" "H4'" sing N N 166
DT "O4'" "C1'" sing N N 167
DT "C3'" "O3'" sing N N 168
DT "C3'" "C2'" sing N N 169
DT "C3'" "H3'" sing N N 170
DT "O3'" "HO3'" sing N N 171
DT "C2'" "C1'" sing N N 172
DT "C2'" "H2'" sing N N 173
DT "C2'" "H2''" sing N N 174
DT "C1'" N1 sing N N 175
DT "C1'" "H1'" sing N N 176
DT N1 C2 sing N N 177
DT N1 C6 sing N N 178
DT C2 O2 doub N N 179
DT C2 N3 sing N N 180
DT N3 C4 sing N N 181
DT N3 H3 sing N N 182
DT C4 O4 doub N N 183
DT C4 C5 sing N N 184
DT C5 C7 sing N N 185
DT C5 C6 doub N N 186
DT C7 H71 sing N N 187
DT C7 H72 sing N N 188
DT C7 H73 sing N N 189
DT C6 H6 sing N N 190
HOH O H1 sing N N 191
HOH O H2 sing N N 192
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
3GJL 'double helix'
3GJL 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 2 1_555 B DC 5 1_555 -0.226 -0.180 0.269 -7.982 -0.800 -1.478 1 A_DG2:DC11_B A 2 ? B 11 ? 19 1
1 A DC 3 1_555 B DG 4 1_555 0.257 -0.113 0.148 -2.087 2.293 0.953 2 A_DC3:DG10_B A 3 ? B 10 ? 19 1
1 A DA 5 1_555 B DT 2 1_555 -0.009 -0.089 -0.017 1.800 -18.773 4.442 3 A_DA5:DT8_B A 5 ? B 8 ? 20 1
1 A DA 6 1_555 B DT 1 1_555 -0.002 -0.085 0.038 -0.067 -18.820 5.475 4 A_DA6:DT7_B A 6 ? B 7 ? 20 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 0.873 0.334 3.360 1.419 -6.238 36.851 1.362 -1.170 3.292 -9.778 -2.224
37.383 1 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ?
1 A DC 3 1_555 B DG 4 1_555 A DA 5 1_555 B DT 2 1_555 0.004 0.099 6.374 3.719 4.817 67.276 -0.272 0.275 6.360 4.339 -3.350
67.518 2 AA_DC3DA5:DT8DG10_BB A 3 ? B 10 ? A 5 ? B 8 ?
1 A DA 5 1_555 B DT 2 1_555 A DA 6 1_555 B DT 1 1_555 0.090 -0.285 3.269 -0.408 -2.459 35.567 -0.108 -0.207 3.279 -4.019 0.666
35.652 3 AA_DA5DA6:DT7DT8_BB A 5 ? B 8 ? A 6 ? B 7 ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 'SODIUM ION' NA
4 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1EHV
_pdbx_initial_refinement_model.details ?
#