data_3GCY
#
_entry.id 3GCY
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3GCY pdb_00003gcy 10.2210/pdb3gcy/pdb
NDB ZD0031 ? ?
RCSB RCSB051704 ? ?
WWPDB D_1000051704 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2009-04-07
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2024-03-20
4 'Structure model' 1 3 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp_atom
2 3 'Structure model' chem_comp_bond
3 3 'Structure model' database_2
4 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3GCY
_pdbx_database_status.recvd_initial_deposition_date 2009-02-23
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 3e9w 'Same DNA sequence co-crystallized with palladium chloride' unspecified
PDB 3fqb 'Same DNA sequence co-crystallized with barium chloride' unspecified
PDB 3fq5 'Same DNA sequence co-crystallized with 10mM manganese chloride' unspecified
PDB 3g2r 'Same DNA sequence co-crystallized with 5mM manganese chloride' unspecified
PDB 3g2a 'Same DNA sequence co-crystallized with 1mM manganese chloride' unspecified
PDB 3GDA . unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Mandal, P.K.' 1
'Venkadesh, S.' 2
'Nandini, M.' 3
'Gautham, N.' 4
#
_citation.id primary
_citation.title 'Crystal studies of d(CACGCG).d(CGCGTG) grown with various metal ions'
_citation.journal_abbrev 'To be Published'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year ?
_citation.journal_id_ASTM ?
_citation.country ?
_citation.journal_id_ISSN ?
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Mandal, P.K.' 1 ?
primary 'Venkadesh, S.' 2 ?
primary 'Nandini, M.' 3 ?
primary 'Gautham, N.' 4 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*CP*AP*CP*GP*CP*G)-3'" 1794.206 1 ? ? ? ?
2 polymer syn "5'-D(*CP*GP*CP*GP*TP*G)-3'" 1825.216 1 ? ? ? ?
3 water nat water 18.015 36 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polydeoxyribonucleotide no no '(DC)(DA)(DC)(DG)(DC)(DG)' CACGCG A ?
2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DG)(DT)(DG)' CGCGTG B ?
#
_pdbx_entity_nonpoly.entity_id 3
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DA n
1 3 DC n
1 4 DG n
1 5 DC n
1 6 DG n
2 1 DC n
2 2 DG n
2 3 DC n
2 4 DG n
2 5 DT n
2 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DA 2 2 2 DA A A . n
A 1 3 DC 3 3 3 DC C A . n
A 1 4 DG 4 4 4 DG G A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
B 2 1 DC 1 7 7 DC C B . n
B 2 2 DG 2 8 8 DG G B . n
B 2 3 DC 3 9 9 DC C B . n
B 2 4 DG 4 10 10 DG G B . n
B 2 5 DT 5 11 11 DT T B . n
B 2 6 DG 6 12 12 DG G B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HOH 1 7 7 HOH HOH A .
C 3 HOH 2 8 8 HOH HOH A .
C 3 HOH 3 9 1 HOH HOH A .
C 3 HOH 4 10 10 HOH HOH A .
C 3 HOH 5 11 4 HOH HOH A .
C 3 HOH 6 12 12 HOH HOH A .
C 3 HOH 7 13 5 HOH HOH A .
C 3 HOH 8 15 15 HOH HOH A .
C 3 HOH 9 20 20 HOH HOH A .
C 3 HOH 10 27 27 HOH HOH A .
C 3 HOH 11 29 29 HOH HOH A .
C 3 HOH 12 31 31 HOH HOH A .
C 3 HOH 13 32 32 HOH HOH A .
D 3 HOH 1 2 2 HOH HOH B .
D 3 HOH 2 3 3 HOH HOH B .
D 3 HOH 3 6 6 HOH HOH B .
D 3 HOH 4 13 13 HOH HOH B .
D 3 HOH 5 14 14 HOH HOH B .
D 3 HOH 6 15 9 HOH HOH B .
D 3 HOH 7 16 16 HOH HOH B .
D 3 HOH 8 17 17 HOH HOH B .
D 3 HOH 9 18 18 HOH HOH B .
D 3 HOH 10 19 19 HOH HOH B .
D 3 HOH 11 20 11 HOH HOH B .
D 3 HOH 12 21 21 HOH HOH B .
D 3 HOH 13 22 22 HOH HOH B .
D 3 HOH 14 23 23 HOH HOH B .
D 3 HOH 15 24 24 HOH HOH B .
D 3 HOH 16 25 25 HOH HOH B .
D 3 HOH 17 26 26 HOH HOH B .
D 3 HOH 18 28 28 HOH HOH B .
D 3 HOH 19 30 30 HOH HOH B .
D 3 HOH 20 33 33 HOH HOH B .
D 3 HOH 21 34 34 HOH HOH B .
D 3 HOH 22 35 35 HOH HOH B .
D 3 HOH 23 36 36 HOH HOH B .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
MAR345dtb 'data collection' . ? 1
PHASER phasing . ? 2
REFMAC refinement 5.2.0019 ? 3
AUTOMAR 'data reduction' . ? 4
SCALEPACK 'data scaling' . ? 5
#
_cell.entry_id 3GCY
_cell.length_a 17.388
_cell.length_b 30.618
_cell.length_c 44.488
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3GCY
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 3GCY
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.64
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.99
_exptl_crystal_grow.pdbx_details
'Sodium Cacodylate 50mM, Calcium chloride 140mM, Spermine 1mM, pH 6.99, VAPOR DIFFUSION, HANGING DROP, temperature 293K'
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 'Sodium cacoldylate' ? ? ?
1 2 1 'Calcium chloride' ? ? ?
1 3 1 Spermine ? ? ?
1 4 2 'Sodium cacoldylate' ? ? ?
1 5 2 'Calcium chloride' ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'MAR scanner 345 mm plate'
_diffrn_detector.pdbx_collection_date 2009-02-14
_diffrn_detector.details Mirrors
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator Mirrors
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.54
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'BRUKER AXS MICROSTAR'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.54
#
_reflns.entry_id 3GCY
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 30.00
_reflns.d_resolution_high 1.80
_reflns.number_obs 2334
_reflns.number_all 2431
_reflns.percent_possible_obs 95.9
_reflns.pdbx_Rmerge_I_obs 0.1026
_reflns.pdbx_Rsym_value 0.08880
_reflns.pdbx_netI_over_sigmaI 4.2
_reflns.B_iso_Wilson_estimate 27.37
_reflns.pdbx_redundancy 4.10
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.80
_reflns_shell.d_res_low 1.86
_reflns_shell.percent_possible_all 99.1
_reflns_shell.Rmerge_I_obs 0.3416
_reflns_shell.pdbx_Rsym_value 0.2905
_reflns_shell.meanI_over_sigI_obs 1.3
_reflns_shell.pdbx_redundancy 4.27
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 226
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 3GCY
_refine.ls_number_reflns_obs 2216
_refine.ls_number_reflns_all 2309
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 15.12
_refine.ls_d_res_high 1.80
_refine.ls_percent_reflns_obs 95.96
_refine.ls_R_factor_obs 0.22845
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.22812
_refine.ls_R_factor_R_free 0.23339
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.9
_refine.ls_number_reflns_R_free 114
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.939
_refine.correlation_coeff_Fo_to_Fc_free 0.944
_refine.B_iso_mean 19.708
_refine.aniso_B[1][1] -0.01
_refine.aniso_B[2][2] 0.01
_refine.aniso_B[3][3] 0.00
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model 'Z-DNA FIBER MODEL BUILT WITH INSIGHT-II'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model Isotropic
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.216
_refine.pdbx_overall_ESU_R_Free 0.155
_refine.overall_SU_ML 0.140
_refine.overall_SU_B 5.213
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_phase_error ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 246
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 36
_refine_hist.number_atoms_total 282
_refine_hist.d_res_high 1.80
_refine_hist.d_res_low 15.12
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.010 0.021 ? 276 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 2.087 3.000 ? 426 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.067 0.200 ? 48 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.009 0.020 ? 125 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.180 0.200 ? 110 'X-RAY DIFFRACTION' ?
r_nbtor_refined 0.287 0.200 ? 149 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.263 0.200 ? 20 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.247 0.200 ? 20 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.179 0.200 ? 7 'X-RAY DIFFRACTION' ?
r_scbond_it 2.172 3.000 ? 395 'X-RAY DIFFRACTION' ?
r_scangle_it 2.196 4.500 ? 424 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.800
_refine_ls_shell.d_res_low 1.847
_refine_ls_shell.number_reflns_R_work 163
_refine_ls_shell.R_factor_R_work 0.356
_refine_ls_shell.percent_reflns_obs 100.00
_refine_ls_shell.R_factor_R_free 0.652
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 6
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs 163
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_database_PDB_matrix.entry_id 3GCY
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 3GCY
_struct.title 'Crystal studies of d(CACGCG).d(CGCGTG) grown in presence of calcium chloride'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag N
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3GCY
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Z-form DNA duplex with Watson-Crick base pairing, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 3 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.entity_id
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_db_isoform
1 PDB 3GCY 3GCY 1 ? ? ?
2 PDB 3GCY 3GCY 2 ? ? ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 3GCY A 1 ? 6 ? 3GCY 1 ? 6 ? 1 6
2 2 3GCY B 1 ? 6 ? 3GCY 7 ? 12 ? 7 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 640 ?
1 MORE -6 ?
1 'SSA (A^2)' 2320 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.64 108.30 3.34 0.30 N
2 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.97 108.30 2.67 0.30 N
3 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 122.99 119.90 3.09 0.50 N
4 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 102.94 108.00 -5.06 0.70 N
5 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.91 108.30 2.61 0.30 N
6 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 103.94 109.40 -5.46 0.80 N
7 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.50 108.30 2.20 0.30 N
8 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 111.43 108.30 3.13 0.30 N
9 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 102.51 108.00 -5.49 0.70 N
10 1 C6 B DT 11 ? ? C5 B DT 11 ? ? C7 B DT 11 ? ? 119.00 122.90 -3.90 0.60 N
11 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 101.96 108.00 -6.04 0.70 N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
HOH O O N N 144
HOH H1 H N N 145
HOH H2 H N N 146
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
#
_ndb_struct_conf_na.entry_id 3GCY
_ndb_struct_conf_na.feature 'z-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 B DG 6 1_555 -0.292 -0.026 0.007 1.267 -5.563 -0.400 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1
1 A DA 2 1_555 B DT 5 1_555 0.876 -0.240 0.221 -9.332 -1.449 2.243 2 A_DA2:DT11_B A 2 ? B 11 ? 20 1
1 A DC 3 1_555 B DG 4 1_555 -0.304 -0.046 0.119 2.542 5.980 0.596 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1
1 A DG 4 1_555 B DC 3 1_555 0.344 -0.136 -0.027 3.281 -3.446 0.791 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1
1 A DC 5 1_555 B DG 2 1_555 -1.249 -0.413 -0.078 11.732 2.587 2.983 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1
1 A DG 6 1_555 B DC 1 1_555 0.572 -0.239 0.139 -4.987 0.356 1.879 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 B DG 6 1_555 A DA 2 1_555 B DT 5 1_555 0.053 5.379 3.885 -0.758 -4.615 -8.749 -17.102 -1.996 5.930 27.793
-4.563 -9.919 1 AA_DC1DA2:DT11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ?
1 A DA 2 1_555 B DT 5 1_555 A DC 3 1_555 B DG 4 1_555 0.365 -0.716 3.125 -1.164 -0.233 -54.951 0.789 0.329 3.128 0.252
-1.261 -54.963 2 AA_DA2DC3:DG10DT11_BB A 2 ? B 11 ? A 3 ? B 10 ?
1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.335 5.366 3.429 0.203 -1.050 -8.732 -32.070 -1.620 4.050 6.859
1.326 -8.797 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ?
1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 0.059 -0.783 3.217 2.283 -9.012 -54.111 1.370 0.196 3.056 9.824
2.489 -54.844 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ?
1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -0.126 5.235 3.798 -1.093 -1.487 0.422 170.250 -4.849 -3.192 -62.133
45.699 1.893 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ?
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'in silico model'
_pdbx_initial_refinement_model.source_name InsightII
_pdbx_initial_refinement_model.details 'Z-DNA FIBER MODEL BUILT WITH INSIGHT-II'
#
_atom_sites.entry_id 3GCY
_atom_sites.fract_transf_matrix[1][1] 0.057511
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.032661
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.022478
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 10.417 -3.375 -15.285 1.00 17.52 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 9.878 -4.026 -14.148 1.00 15.40 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 8.417 -3.616 -13.983 1.00 15.34 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 8.318 -2.243 -13.531 1.00 17.89 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 7.548 -3.733 -15.230 1.00 15.75 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 6.221 -4.154 -14.890 1.00 17.47 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 7.423 -2.292 -15.687 1.00 17.06 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 7.357 -1.573 -14.343 1.00 18.27 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 7.688 -0.128 -14.508 1.00 18.00 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 6.661 0.798 -14.709 1.00 16.17 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 5.493 0.401 -14.733 1.00 17.02 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 6.999 2.097 -14.871 1.00 18.10 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 8.278 2.485 -14.857 1.00 15.44 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 8.572 3.771 -15.035 1.00 17.43 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 9.325 1.555 -14.686 1.00 18.00 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 8.995 0.273 -14.515 1.00 17.92 ? 1 DC A C6 1
ATOM 17 P P . DA A 1 2 ? 5.693 -5.645 -14.808 1.00 17.13 ? 2 DA A P 1
ATOM 18 O OP1 . DA A 1 2 ? 6.226 -6.370 -15.965 1.00 17.91 ? 2 DA A OP1 1
ATOM 19 O OP2 . DA A 1 2 ? 4.249 -5.588 -14.511 1.00 17.04 ? 2 DA A OP2 1
ATOM 20 O "O5'" . DA A 1 2 ? 6.385 -6.278 -13.533 1.00 18.51 ? 2 DA A "O5'" 1
ATOM 21 C "C5'" . DA A 1 2 ? 6.018 -5.905 -12.217 1.00 18.36 ? 2 DA A "C5'" 1
ATOM 22 C "C4'" . DA A 1 2 ? 6.926 -6.575 -11.213 1.00 19.89 ? 2 DA A "C4'" 1
ATOM 23 O "O4'" . DA A 1 2 ? 8.304 -6.161 -11.444 1.00 18.38 ? 2 DA A "O4'" 1
ATOM 24 C "C3'" . DA A 1 2 ? 6.598 -6.269 -9.755 1.00 19.62 ? 2 DA A "C3'" 1
ATOM 25 O "O3'" . DA A 1 2 ? 5.915 -7.383 -9.208 1.00 21.95 ? 2 DA A "O3'" 1
ATOM 26 C "C2'" . DA A 1 2 ? 7.964 -6.131 -9.079 1.00 19.07 ? 2 DA A "C2'" 1
ATOM 27 C "C1'" . DA A 1 2 ? 8.950 -5.861 -10.209 1.00 18.69 ? 2 DA A "C1'" 1
ATOM 28 N N9 . DA A 1 2 ? 9.462 -4.478 -10.305 1.00 19.00 ? 2 DA A N9 1
ATOM 29 C C8 . DA A 1 2 ? 10.774 -4.122 -10.403 1.00 17.92 ? 2 DA A C8 1
ATOM 30 N N7 . DA A 1 2 ? 10.973 -2.840 -10.510 1.00 18.96 ? 2 DA A N7 1
ATOM 31 C C5 . DA A 1 2 ? 9.695 -2.311 -10.480 1.00 19.61 ? 2 DA A C5 1
ATOM 32 C C6 . DA A 1 2 ? 9.197 -0.982 -10.554 1.00 21.74 ? 2 DA A C6 1
ATOM 33 N N6 . DA A 1 2 ? 9.993 0.086 -10.670 1.00 24.89 ? 2 DA A N6 1
ATOM 34 N N1 . DA A 1 2 ? 7.866 -0.781 -10.509 1.00 21.57 ? 2 DA A N1 1
ATOM 35 C C2 . DA A 1 2 ? 7.048 -1.827 -10.402 1.00 22.00 ? 2 DA A C2 1
ATOM 36 N N3 . DA A 1 2 ? 7.401 -3.105 -10.315 1.00 19.91 ? 2 DA A N3 1
ATOM 37 C C4 . DA A 1 2 ? 8.747 -3.291 -10.350 1.00 18.38 ? 2 DA A C4 1
ATOM 38 P P A DC A 1 3 ? 4.343 -7.455 -8.938 0.45 22.82 ? 3 DC A P 1
ATOM 39 P P B DC A 1 3 ? 5.286 -7.308 -7.728 0.55 18.47 ? 3 DC A P 1
ATOM 40 O OP1 A DC A 1 3 ? 4.103 -8.704 -8.168 0.45 23.14 ? 3 DC A OP1 1
ATOM 41 O OP1 B DC A 1 3 ? 6.265 -6.721 -6.788 0.55 24.03 ? 3 DC A OP1 1
ATOM 42 O OP2 A DC A 1 3 ? 3.584 -7.198 -10.192 0.45 21.92 ? 3 DC A OP2 1
ATOM 43 O OP2 B DC A 1 3 ? 4.708 -8.640 -7.426 0.55 21.41 ? 3 DC A OP2 1
ATOM 44 O "O5'" . DC A 1 3 ? 4.151 -6.237 -7.937 1.00 20.07 ? 3 DC A "O5'" 1
ATOM 45 C "C5'" . DC A 1 3 ? 3.039 -6.158 -7.073 1.00 18.44 ? 3 DC A "C5'" 1
ATOM 46 C "C4'" . DC A 1 3 ? 2.624 -4.708 -6.935 1.00 18.79 ? 3 DC A "C4'" 1
ATOM 47 O "O4'" . DC A 1 3 ? 3.640 -3.871 -6.316 1.00 18.29 ? 3 DC A "O4'" 1
ATOM 48 C "C3'" . DC A 1 3 ? 2.283 -4.076 -8.276 1.00 17.68 ? 3 DC A "C3'" 1
ATOM 49 O "O3'" . DC A 1 3 ? 1.120 -3.269 -8.100 1.00 19.51 ? 3 DC A "O3'" 1
ATOM 50 C "C2'" . DC A 1 3 ? 3.503 -3.227 -8.594 1.00 15.44 ? 3 DC A "C2'" 1
ATOM 51 C "C1'" . DC A 1 3 ? 3.901 -2.778 -7.194 1.00 16.32 ? 3 DC A "C1'" 1
ATOM 52 N N1 . DC A 1 3 ? 5.329 -2.414 -7.173 1.00 16.04 ? 3 DC A N1 1
ATOM 53 C C2 . DC A 1 3 ? 5.693 -1.085 -7.372 1.00 13.85 ? 3 DC A C2 1
ATOM 54 O O2 . DC A 1 3 ? 4.808 -0.212 -7.549 1.00 13.79 ? 3 DC A O2 1
ATOM 55 N N3 . DC A 1 3 ? 7.020 -0.815 -7.361 1.00 14.75 ? 3 DC A N3 1
ATOM 56 C C4 . DC A 1 3 ? 7.951 -1.754 -7.182 1.00 12.99 ? 3 DC A C4 1
ATOM 57 N N4 . DC A 1 3 ? 9.244 -1.410 -7.183 1.00 11.49 ? 3 DC A N4 1
ATOM 58 C C5 . DC A 1 3 ? 7.581 -3.104 -6.969 1.00 12.73 ? 3 DC A C5 1
ATOM 59 C C6 . DC A 1 3 ? 6.278 -3.378 -6.979 1.00 13.90 ? 3 DC A C6 1
ATOM 60 P P . DG A 1 4 ? -0.367 -3.839 -8.086 1.00 19.41 ? 4 DG A P 1
ATOM 61 O OP1 . DG A 1 4 ? -0.578 -4.690 -9.272 1.00 20.22 ? 4 DG A OP1 1
ATOM 62 O OP2 . DG A 1 4 ? -1.245 -2.665 -7.973 1.00 22.66 ? 4 DG A OP2 1
ATOM 63 O "O5'" . DG A 1 4 ? -0.498 -4.690 -6.744 1.00 18.97 ? 4 DG A "O5'" 1
ATOM 64 C "C5'" . DG A 1 4 ? -0.452 -4.025 -5.508 1.00 20.05 ? 4 DG A "C5'" 1
ATOM 65 C "C4'" . DG A 1 4 ? -0.581 -5.018 -4.380 1.00 21.20 ? 4 DG A "C4'" 1
ATOM 66 O "O4'" . DG A 1 4 ? 0.478 -5.999 -4.410 1.00 21.54 ? 4 DG A "O4'" 1
ATOM 67 C "C3'" . DG A 1 4 ? -0.512 -4.370 -3.004 1.00 23.37 ? 4 DG A "C3'" 1
ATOM 68 O "O3'" . DG A 1 4 ? -1.852 -4.082 -2.639 1.00 28.35 ? 4 DG A "O3'" 1
ATOM 69 C "C2'" . DG A 1 4 ? 0.117 -5.419 -2.101 1.00 21.46 ? 4 DG A "C2'" 1
ATOM 70 C "C1'" . DG A 1 4 ? 0.881 -6.313 -3.081 1.00 20.54 ? 4 DG A "C1'" 1
ATOM 71 N N9 . DG A 1 4 ? 2.333 -6.193 -3.143 1.00 19.48 ? 4 DG A N9 1
ATOM 72 C C8 . DG A 1 4 ? 3.213 -7.227 -3.082 1.00 18.39 ? 4 DG A C8 1
ATOM 73 N N7 . DG A 1 4 ? 4.444 -6.857 -3.193 1.00 19.95 ? 4 DG A N7 1
ATOM 74 C C5 . DG A 1 4 ? 4.382 -5.485 -3.358 1.00 18.74 ? 4 DG A C5 1
ATOM 75 C C6 . DG A 1 4 ? 5.416 -4.536 -3.542 1.00 17.68 ? 4 DG A C6 1
ATOM 76 O O6 . DG A 1 4 ? 6.638 -4.763 -3.599 1.00 19.11 ? 4 DG A O6 1
ATOM 77 N N1 . DG A 1 4 ? 4.919 -3.224 -3.660 1.00 17.40 ? 4 DG A N1 1
ATOM 78 C C2 . DG A 1 4 ? 3.577 -2.895 -3.621 1.00 17.10 ? 4 DG A C2 1
ATOM 79 N N2 . DG A 1 4 ? 3.212 -1.621 -3.744 1.00 16.15 ? 4 DG A N2 1
ATOM 80 N N3 . DG A 1 4 ? 2.620 -3.793 -3.469 1.00 19.24 ? 4 DG A N3 1
ATOM 81 C C4 . DG A 1 4 ? 3.085 -5.061 -3.336 1.00 18.31 ? 4 DG A C4 1
ATOM 82 P P . DC A 1 5 ? -2.291 -2.693 -1.973 1.00 31.63 ? 5 DC A P 1
ATOM 83 O OP1 . DC A 1 5 ? -3.658 -2.873 -1.452 1.00 33.56 ? 5 DC A OP1 1
ATOM 84 O OP2 . DC A 1 5 ? -2.033 -1.508 -2.848 1.00 28.36 ? 5 DC A OP2 1
ATOM 85 O "O5'" . DC A 1 5 ? -1.391 -2.776 -0.642 1.00 26.80 ? 5 DC A "O5'" 1
ATOM 86 C "C5'" . DC A 1 5 ? -1.775 -1.957 0.439 1.00 24.21 ? 5 DC A "C5'" 1
ATOM 87 C "C4'" . DC A 1 5 ? -0.698 -0.931 0.750 1.00 20.79 ? 5 DC A "C4'" 1
ATOM 88 O "O4'" . DC A 1 5 ? 0.479 -1.570 1.289 1.00 21.10 ? 5 DC A "O4'" 1
ATOM 89 C "C3'" . DC A 1 5 ? -0.261 -0.087 -0.441 1.00 20.80 ? 5 DC A "C3'" 1
ATOM 90 O "O3'" . DC A 1 5 ? -0.175 1.259 -0.033 1.00 21.89 ? 5 DC A "O3'" 1
ATOM 91 C "C2'" . DC A 1 5 ? 1.099 -0.655 -0.790 1.00 20.40 ? 5 DC A "C2'" 1
ATOM 92 C "C1'" . DC A 1 5 ? 1.617 -1.151 0.561 1.00 20.84 ? 5 DC A "C1'" 1
ATOM 93 N N1 . DC A 1 5 ? 2.572 -2.261 0.393 1.00 20.92 ? 5 DC A N1 1
ATOM 94 C C2 . DC A 1 5 ? 3.903 -1.968 0.068 1.00 20.52 ? 5 DC A C2 1
ATOM 95 O O2 . DC A 1 5 ? 4.300 -0.807 -0.051 1.00 19.23 ? 5 DC A O2 1
ATOM 96 N N3 . DC A 1 5 ? 4.746 -3.006 -0.105 1.00 22.94 ? 5 DC A N3 1
ATOM 97 C C4 . DC A 1 5 ? 4.348 -4.267 0.017 1.00 21.23 ? 5 DC A C4 1
ATOM 98 N N4 . DC A 1 5 ? 5.280 -5.214 -0.178 1.00 22.78 ? 5 DC A N4 1
ATOM 99 C C5 . DC A 1 5 ? 2.998 -4.586 0.349 1.00 20.77 ? 5 DC A C5 1
ATOM 100 C C6 . DC A 1 5 ? 2.163 -3.564 0.516 1.00 20.25 ? 5 DC A C6 1
ATOM 101 P P . DG A 1 6 ? -1.419 2.247 -0.003 1.00 23.27 ? 6 DG A P 1
ATOM 102 O OP1 . DG A 1 6 ? -2.143 2.194 -1.304 1.00 22.64 ? 6 DG A OP1 1
ATOM 103 O OP2 . DG A 1 6 ? -0.827 3.505 0.492 1.00 25.64 ? 6 DG A OP2 1
ATOM 104 O "O5'" . DG A 1 6 ? -2.423 1.735 1.149 1.00 20.39 ? 6 DG A "O5'" 1
ATOM 105 C "C5'" . DG A 1 6 ? -2.204 1.858 2.521 1.00 14.30 ? 6 DG A "C5'" 1
ATOM 106 C "C4'" . DG A 1 6 ? -3.466 1.306 3.142 1.00 16.37 ? 6 DG A "C4'" 1
ATOM 107 O "O4'" . DG A 1 6 ? -3.444 -0.140 3.028 1.00 17.80 ? 6 DG A "O4'" 1
ATOM 108 C "C3'" . DG A 1 6 ? -3.699 1.584 4.629 1.00 16.47 ? 6 DG A "C3'" 1
ATOM 109 O "O3'" . DG A 1 6 ? -5.106 1.504 4.925 1.00 17.36 ? 6 DG A "O3'" 1
ATOM 110 C "C2'" . DG A 1 6 ? -2.990 0.418 5.287 1.00 15.57 ? 6 DG A "C2'" 1
ATOM 111 C "C1'" . DG A 1 6 ? -3.363 -0.715 4.328 1.00 17.13 ? 6 DG A "C1'" 1
ATOM 112 N N9 . DG A 1 6 ? -2.394 -1.799 4.243 1.00 17.13 ? 6 DG A N9 1
ATOM 113 C C8 . DG A 1 6 ? -2.703 -3.136 4.222 1.00 19.60 ? 6 DG A C8 1
ATOM 114 N N7 . DG A 1 6 ? -1.665 -3.918 4.124 1.00 19.60 ? 6 DG A N7 1
ATOM 115 C C5 . DG A 1 6 ? -0.591 -3.020 4.073 1.00 17.85 ? 6 DG A C5 1
ATOM 116 C C6 . DG A 1 6 ? 0.800 -3.282 3.970 1.00 16.26 ? 6 DG A C6 1
ATOM 117 O O6 . DG A 1 6 ? 1.358 -4.380 3.902 1.00 17.62 ? 6 DG A O6 1
ATOM 118 N N1 . DG A 1 6 ? 1.567 -2.124 3.958 1.00 16.13 ? 6 DG A N1 1
ATOM 119 C C2 . DG A 1 6 ? 1.043 -0.845 4.030 1.00 15.13 ? 6 DG A C2 1
ATOM 120 N N2 . DG A 1 6 ? 1.932 0.148 3.968 1.00 12.68 ? 6 DG A N2 1
ATOM 121 N N3 . DG A 1 6 ? -0.261 -0.575 4.117 1.00 15.43 ? 6 DG A N3 1
ATOM 122 C C4 . DG A 1 6 ? -1.022 -1.712 4.150 1.00 16.58 ? 6 DG A C4 1
ATOM 123 O "O5'" . DC B 2 1 ? 10.368 -2.120 4.032 1.00 17.27 ? 7 DC B "O5'" 1
ATOM 124 C "C5'" . DC B 2 1 ? 10.657 -1.203 3.007 1.00 14.35 ? 7 DC B "C5'" 1
ATOM 125 C "C4'" . DC B 2 1 ? 9.535 -0.201 2.769 1.00 16.95 ? 7 DC B "C4'" 1
ATOM 126 O "O4'" . DC B 2 1 ? 8.373 -0.862 2.203 1.00 19.39 ? 7 DC B "O4'" 1
ATOM 127 C "C3'" . DC B 2 1 ? 8.985 0.557 3.958 1.00 18.09 ? 7 DC B "C3'" 1
ATOM 128 O "O3'" . DC B 2 1 ? 8.589 1.867 3.496 1.00 19.78 ? 7 DC B "O3'" 1
ATOM 129 C "C2'" . DC B 2 1 ? 7.782 -0.278 4.405 1.00 17.38 ? 7 DC B "C2'" 1
ATOM 130 C "C1'" . DC B 2 1 ? 7.243 -0.672 3.031 1.00 18.81 ? 7 DC B "C1'" 1
ATOM 131 N N1 . DC B 2 1 ? 6.442 -1.905 3.101 1.00 19.88 ? 7 DC B N1 1
ATOM 132 C C2 . DC B 2 1 ? 5.063 -1.752 3.319 1.00 18.50 ? 7 DC B C2 1
ATOM 133 O O2 . DC B 2 1 ? 4.572 -0.628 3.425 1.00 17.74 ? 7 DC B O2 1
ATOM 134 N N3 . DC B 2 1 ? 4.314 -2.864 3.407 1.00 18.16 ? 7 DC B N3 1
ATOM 135 C C4 . DC B 2 1 ? 4.871 -4.069 3.282 1.00 17.93 ? 7 DC B C4 1
ATOM 136 N N4 . DC B 2 1 ? 4.042 -5.107 3.382 1.00 17.82 ? 7 DC B N4 1
ATOM 137 C C5 . DC B 2 1 ? 6.272 -4.258 3.047 1.00 18.24 ? 7 DC B C5 1
ATOM 138 C C6 . DC B 2 1 ? 7.018 -3.148 2.971 1.00 17.98 ? 7 DC B C6 1
ATOM 139 P P . DG B 2 2 ? 9.558 3.128 3.565 1.00 20.91 ? 8 DG B P 1
ATOM 140 O OP1 . DG B 2 2 ? 10.343 2.949 4.824 1.00 21.83 ? 8 DG B OP1 1
ATOM 141 O OP2 . DG B 2 2 ? 8.706 4.293 3.263 1.00 21.52 ? 8 DG B OP2 1
ATOM 142 O "O5'" . DG B 2 2 ? 10.667 2.999 2.405 1.00 20.48 ? 8 DG B "O5'" 1
ATOM 143 C "C5'" . DG B 2 2 ? 10.332 3.043 1.040 1.00 19.00 ? 8 DG B "C5'" 1
ATOM 144 C "C4'" . DG B 2 2 ? 11.523 2.627 0.245 1.00 19.12 ? 8 DG B "C4'" 1
ATOM 145 O "O4'" . DG B 2 2 ? 11.777 1.252 0.595 1.00 19.47 ? 8 DG B "O4'" 1
ATOM 146 C "C3'" . DG B 2 2 ? 11.251 2.658 -1.251 1.00 19.39 ? 8 DG B "C3'" 1
ATOM 147 O "O3'" . DG B 2 2 ? 11.771 3.870 -1.811 1.00 20.93 ? 8 DG B "O3'" 1
ATOM 148 C "C2'" . DG B 2 2 ? 11.958 1.408 -1.777 1.00 20.75 ? 8 DG B "C2'" 1
ATOM 149 C "C1'" . DG B 2 2 ? 12.071 0.497 -0.569 1.00 22.02 ? 8 DG B "C1'" 1
ATOM 150 N N9 . DG B 2 2 ? 11.166 -0.647 -0.603 1.00 23.20 ? 8 DG B N9 1
ATOM 151 C C8 . DG B 2 2 ? 11.566 -1.950 -0.649 1.00 22.77 ? 8 DG B C8 1
ATOM 152 N N7 . DG B 2 2 ? 10.581 -2.793 -0.640 1.00 24.66 ? 8 DG B N7 1
ATOM 153 C C5 . DG B 2 2 ? 9.451 -2.001 -0.598 1.00 23.41 ? 8 DG B C5 1
ATOM 154 C C6 . DG B 2 2 ? 8.096 -2.389 -0.571 1.00 23.36 ? 8 DG B C6 1
ATOM 155 O O6 . DG B 2 2 ? 7.677 -3.549 -0.602 1.00 26.01 ? 8 DG B O6 1
ATOM 156 N N1 . DG B 2 2 ? 7.232 -1.301 -0.501 1.00 22.12 ? 8 DG B N1 1
ATOM 157 C C2 . DG B 2 2 ? 7.668 -0.004 -0.466 1.00 21.66 ? 8 DG B C2 1
ATOM 158 N N2 . DG B 2 2 ? 6.727 0.917 -0.395 1.00 22.30 ? 8 DG B N2 1
ATOM 159 N N3 . DG B 2 2 ? 8.931 0.383 -0.503 1.00 20.59 ? 8 DG B N3 1
ATOM 160 C C4 . DG B 2 2 ? 9.779 -0.669 -0.571 1.00 22.72 ? 8 DG B C4 1
ATOM 161 P P A DC B 2 3 ? 10.763 5.043 -2.301 0.45 21.90 ? 9 DC B P 1
ATOM 162 P P B DC B 2 3 ? 11.599 4.203 -3.376 0.55 18.31 ? 9 DC B P 1
ATOM 163 O OP1 A DC B 2 3 ? 11.533 6.160 -2.883 0.45 21.86 ? 9 DC B OP1 1
ATOM 164 O OP1 B DC B 2 3 ? 12.113 3.103 -4.222 0.55 19.29 ? 9 DC B OP1 1
ATOM 165 O OP2 A DC B 2 3 ? 9.783 5.334 -1.234 0.45 21.66 ? 9 DC B OP2 1
ATOM 166 O OP2 B DC B 2 3 ? 12.160 5.552 -3.533 0.55 19.95 ? 9 DC B OP2 1
ATOM 167 O "O5'" . DC B 2 3 ? 10.001 4.321 -3.495 1.00 20.42 ? 9 DC B "O5'" 1
ATOM 168 C "C5'" . DC B 2 3 ? 9.363 5.064 -4.535 1.00 19.09 ? 9 DC B "C5'" 1
ATOM 169 C "C4'" . DC B 2 3 ? 7.900 4.648 -4.646 1.00 18.86 ? 9 DC B "C4'" 1
ATOM 170 O "O4'" . DC B 2 3 ? 7.773 3.277 -5.106 1.00 21.21 ? 9 DC B "O4'" 1
ATOM 171 C "C3'" . DC B 2 3 ? 7.070 4.675 -3.377 1.00 18.82 ? 9 DC B "C3'" 1
ATOM 172 O "O3'" . DC B 2 3 ? 5.771 5.102 -3.667 1.00 19.82 ? 9 DC B "O3'" 1
ATOM 173 C "C2'" . DC B 2 3 ? 7.004 3.224 -2.925 1.00 19.23 ? 9 DC B "C2'" 1
ATOM 174 C "C1'" . DC B 2 3 ? 6.958 2.505 -4.257 1.00 18.20 ? 9 DC B "C1'" 1
ATOM 175 N N1 . DC B 2 3 ? 7.477 1.102 -4.125 1.00 19.64 ? 9 DC B N1 1
ATOM 176 C C2 . DC B 2 3 ? 6.554 0.050 -4.025 1.00 17.81 ? 9 DC B C2 1
ATOM 177 O O2 . DC B 2 3 ? 5.349 0.279 -4.044 1.00 17.52 ? 9 DC B O2 1
ATOM 178 N N3 . DC B 2 3 ? 7.020 -1.207 -3.898 1.00 17.86 ? 9 DC B N3 1
ATOM 179 C C4 . DC B 2 3 ? 8.338 -1.438 -3.829 1.00 17.21 ? 9 DC B C4 1
ATOM 180 N N4 . DC B 2 3 ? 8.737 -2.700 -3.689 1.00 17.70 ? 9 DC B N4 1
ATOM 181 C C5 . DC B 2 3 ? 9.289 -0.390 -3.924 1.00 17.32 ? 9 DC B C5 1
ATOM 182 C C6 . DC B 2 3 ? 8.826 0.854 -4.067 1.00 17.66 ? 9 DC B C6 1
ATOM 183 P P . DG B 2 4 ? 5.346 6.612 -3.405 1.00 20.73 ? 10 DG B P 1
ATOM 184 O OP1 . DG B 2 4 ? 6.177 7.192 -2.329 1.00 20.05 ? 10 DG B OP1 1
ATOM 185 O OP2 . DG B 2 4 ? 3.878 6.629 -3.320 1.00 20.61 ? 10 DG B OP2 1
ATOM 186 O "O5'" . DG B 2 4 ? 5.784 7.317 -4.758 1.00 21.16 ? 10 DG B "O5'" 1
ATOM 187 C "C5'" . DG B 2 4 ? 5.304 6.905 -6.025 1.00 17.28 ? 10 DG B "C5'" 1
ATOM 188 C "C4'" . DG B 2 4 ? 6.125 7.636 -7.040 1.00 14.36 ? 10 DG B "C4'" 1
ATOM 189 O "O4'" . DG B 2 4 ? 7.528 7.305 -6.926 1.00 13.58 ? 10 DG B "O4'" 1
ATOM 190 C "C3'" . DG B 2 4 ? 5.716 7.240 -8.428 1.00 14.02 ? 10 DG B "C3'" 1
ATOM 191 O "O3'" . DG B 2 4 ? 4.714 8.136 -8.779 1.00 15.74 ? 10 DG B "O3'" 1
ATOM 192 C "C2'" . DG B 2 4 ? 7.002 7.451 -9.222 1.00 14.68 ? 10 DG B "C2'" 1
ATOM 193 C "C1'" . DG B 2 4 ? 8.112 7.228 -8.199 1.00 13.05 ? 10 DG B "C1'" 1
ATOM 194 N N9 . DG B 2 4 ? 8.762 5.922 -8.170 1.00 15.83 ? 10 DG B N9 1
ATOM 195 C C8 . DG B 2 4 ? 10.133 5.737 -8.194 1.00 14.63 ? 10 DG B C8 1
ATOM 196 N N7 . DG B 2 4 ? 10.489 4.497 -8.095 1.00 16.58 ? 10 DG B N7 1
ATOM 197 C C5 . DG B 2 4 ? 9.275 3.800 -8.009 1.00 16.47 ? 10 DG B C5 1
ATOM 198 C C6 . DG B 2 4 ? 9.018 2.420 -7.892 1.00 17.15 ? 10 DG B C6 1
ATOM 199 O O6 . DG B 2 4 ? 9.839 1.497 -7.848 1.00 19.79 ? 10 DG B O6 1
ATOM 200 N N1 . DG B 2 4 ? 7.651 2.120 -7.832 1.00 16.61 ? 10 DG B N1 1
ATOM 201 C C2 . DG B 2 4 ? 6.651 3.049 -7.844 1.00 15.90 ? 10 DG B C2 1
ATOM 202 N N2 . DG B 2 4 ? 5.390 2.602 -7.738 1.00 13.70 ? 10 DG B N2 1
ATOM 203 N N3 . DG B 2 4 ? 6.885 4.332 -7.936 1.00 13.31 ? 10 DG B N3 1
ATOM 204 C C4 . DG B 2 4 ? 8.200 4.651 -8.041 1.00 14.55 ? 10 DG B C4 1
ATOM 205 P P . DT B 2 5 ? 3.319 7.685 -9.389 1.00 18.02 ? 11 DT B P 1
ATOM 206 O OP1 . DT B 2 5 ? 2.637 8.957 -9.738 1.00 21.70 ? 11 DT B OP1 1
ATOM 207 O OP2 . DT B 2 5 ? 2.564 6.744 -8.543 1.00 17.79 ? 11 DT B OP2 1
ATOM 208 O "O5'" . DT B 2 5 ? 3.802 7.016 -10.772 1.00 17.21 ? 11 DT B "O5'" 1
ATOM 209 C "C5'" . DT B 2 5 ? 2.841 6.687 -11.796 1.00 19.30 ? 11 DT B "C5'" 1
ATOM 210 C "C4'" . DT B 2 5 ? 2.720 5.194 -12.076 1.00 21.18 ? 11 DT B "C4'" 1
ATOM 211 O "O4'" . DT B 2 5 ? 3.972 4.635 -12.562 1.00 22.48 ? 11 DT B "O4'" 1
ATOM 212 C "C3'" . DT B 2 5 ? 2.291 4.323 -10.901 1.00 20.23 ? 11 DT B "C3'" 1
ATOM 213 O "O3'" . DT B 2 5 ? 1.426 3.338 -11.430 1.00 21.68 ? 11 DT B "O3'" 1
ATOM 214 C "C2'" . DT B 2 5 ? 3.591 3.701 -10.435 1.00 19.15 ? 11 DT B "C2'" 1
ATOM 215 C "C1'" . DT B 2 5 ? 4.276 3.512 -11.784 1.00 19.67 ? 11 DT B "C1'" 1
ATOM 216 N N1 . DT B 2 5 ? 5.711 3.418 -11.678 1.00 19.25 ? 11 DT B N1 1
ATOM 217 C C2 . DT B 2 5 ? 6.245 2.163 -11.398 1.00 18.81 ? 11 DT B C2 1
ATOM 218 O O2 . DT B 2 5 ? 5.575 1.168 -11.241 1.00 19.07 ? 11 DT B O2 1
ATOM 219 N N3 . DT B 2 5 ? 7.600 2.110 -11.300 1.00 18.75 ? 11 DT B N3 1
ATOM 220 C C4 . DT B 2 5 ? 8.465 3.155 -11.467 1.00 18.45 ? 11 DT B C4 1
ATOM 221 O O4 . DT B 2 5 ? 9.672 2.955 -11.347 1.00 19.79 ? 11 DT B O4 1
ATOM 222 C C5 . DT B 2 5 ? 7.845 4.446 -11.768 1.00 18.65 ? 11 DT B C5 1
ATOM 223 C C7 . DT B 2 5 ? 8.661 5.664 -12.055 1.00 16.78 ? 11 DT B C7 1
ATOM 224 C C6 . DT B 2 5 ? 6.509 4.521 -11.863 1.00 18.16 ? 11 DT B C6 1
ATOM 225 P P . DG B 2 6 ? -0.151 3.451 -11.264 1.00 23.07 ? 12 DG B P 1
ATOM 226 O OP1 . DG B 2 6 ? -0.549 3.998 -9.949 1.00 21.52 ? 12 DG B OP1 1
ATOM 227 O OP2 . DG B 2 6 ? -0.599 2.114 -11.717 1.00 25.79 ? 12 DG B OP2 1
ATOM 228 O "O5'" . DG B 2 6 ? -0.583 4.519 -12.384 1.00 21.77 ? 12 DG B "O5'" 1
ATOM 229 C "C5'" . DG B 2 6 ? -0.674 4.158 -13.745 1.00 16.84 ? 12 DG B "C5'" 1
ATOM 230 C "C4'" . DG B 2 6 ? -1.217 5.333 -14.518 1.00 16.74 ? 12 DG B "C4'" 1
ATOM 231 O "O4'" . DG B 2 6 ? -0.138 6.279 -14.608 1.00 17.13 ? 12 DG B "O4'" 1
ATOM 232 C "C3'" . DG B 2 6 ? -1.602 5.030 -15.960 1.00 17.41 ? 12 DG B "C3'" 1
ATOM 233 O "O3'" . DG B 2 6 ? -2.679 5.903 -16.339 1.00 20.52 ? 12 DG B "O3'" 1
ATOM 234 C "C2'" . DG B 2 6 ? -0.328 5.313 -16.746 1.00 15.34 ? 12 DG B "C2'" 1
ATOM 235 C "C1'" . DG B 2 6 ? 0.254 6.471 -15.949 1.00 16.17 ? 12 DG B "C1'" 1
ATOM 236 N N9 . DG B 2 6 ? 1.702 6.562 -15.830 1.00 18.31 ? 12 DG B N9 1
ATOM 237 C C8 . DG B 2 6 ? 2.428 7.711 -15.807 1.00 14.90 ? 12 DG B C8 1
ATOM 238 N N7 . DG B 2 6 ? 3.698 7.507 -15.655 1.00 16.43 ? 12 DG B N7 1
ATOM 239 C C5 . DG B 2 6 ? 3.851 6.128 -15.551 1.00 17.17 ? 12 DG B C5 1
ATOM 240 C C6 . DG B 2 6 ? 5.003 5.296 -15.369 1.00 17.06 ? 12 DG B C6 1
ATOM 241 O O6 . DG B 2 6 ? 6.208 5.599 -15.244 1.00 18.64 ? 12 DG B O6 1
ATOM 242 N N1 . DG B 2 6 ? 4.660 3.948 -15.343 1.00 16.12 ? 12 DG B N1 1
ATOM 243 C C2 . DG B 2 6 ? 3.380 3.464 -15.433 1.00 14.17 ? 12 DG B C2 1
ATOM 244 N N2 . DG B 2 6 ? 3.184 2.156 -15.363 1.00 12.77 ? 12 DG B N2 1
ATOM 245 N N3 . DG B 2 6 ? 2.318 4.219 -15.588 1.00 16.41 ? 12 DG B N3 1
ATOM 246 C C4 . DG B 2 6 ? 2.612 5.537 -15.649 1.00 17.29 ? 12 DG B C4 1
HETATM 247 O O . HOH C 3 . ? 7.159 -7.218 -4.250 1.00 33.03 ? 7 HOH A O 1
HETATM 248 O O . HOH C 3 . ? -4.407 0.008 -4.836 1.00 25.92 ? 8 HOH A O 1
HETATM 249 O O . HOH C 3 . ? 1.184 3.044 3.192 1.00 18.75 ? 9 HOH A O 1
HETATM 250 O O . HOH C 3 . ? 11.450 -3.175 -7.024 1.00 21.57 ? 10 HOH A O 1
HETATM 251 O O . HOH C 3 . ? -0.074 -0.262 -7.011 1.00 20.74 ? 11 HOH A O 1
HETATM 252 O O . HOH C 3 . ? -1.990 1.529 -7.110 1.00 29.14 ? 12 HOH A O 1
HETATM 253 O O . HOH C 3 . ? 0.620 -0.551 -4.292 1.00 17.98 ? 13 HOH A O 1
HETATM 254 O O . HOH C 3 . ? 2.214 0.448 -8.514 1.00 23.56 ? 15 HOH A O 1
HETATM 255 O O . HOH C 3 . ? -1.264 4.629 4.554 1.00 22.71 ? 20 HOH A O 1
HETATM 256 O O . HOH C 3 . ? 11.581 4.150 -14.708 1.00 28.58 ? 27 HOH A O 1
HETATM 257 O O . HOH C 3 . ? 2.021 -7.000 -11.816 1.00 34.36 ? 29 HOH A O 1
HETATM 258 O O . HOH C 3 . ? 12.944 -1.878 -14.089 1.00 29.16 ? 31 HOH A O 1
HETATM 259 O O . HOH C 3 . ? 13.024 2.252 -14.643 1.00 20.98 ? 32 HOH A O 1
HETATM 260 O O . HOH D 3 . ? 10.767 -1.173 6.563 1.00 15.31 ? 2 HOH B O 1
HETATM 261 O O . HOH D 3 . ? 3.285 4.491 -7.175 1.00 16.75 ? 3 HOH B O 1
HETATM 262 O O . HOH D 3 . ? 8.818 8.620 -4.885 1.00 21.64 ? 6 HOH B O 1
HETATM 263 O O . HOH D 3 . ? 8.053 -0.835 7.701 1.00 15.34 ? 13 HOH B O 1
HETATM 264 O O . HOH D 3 . ? 4.833 1.388 6.223 1.00 24.05 ? 14 HOH B O 1
HETATM 265 O O . HOH D 3 . ? -0.378 8.041 -12.430 1.00 17.50 ? 15 HOH B O 1
HETATM 266 O O . HOH D 3 . ? 11.385 -4.561 3.153 1.00 22.74 ? 16 HOH B O 1
HETATM 267 O O . HOH D 3 . ? 6.057 -7.623 3.112 1.00 12.09 ? 17 HOH B O 1
HETATM 268 O O . HOH D 3 . ? 3.052 10.356 -12.099 1.00 20.20 ? 18 HOH B O 1
HETATM 269 O O . HOH D 3 . ? -0.205 6.517 -9.242 1.00 36.09 ? 19 HOH B O 1
HETATM 270 O O . HOH D 3 . ? 11.682 -3.380 -3.693 1.00 23.21 ? 20 HOH B O 1
HETATM 271 O O . HOH D 3 . ? 1.348 7.633 -6.193 1.00 26.24 ? 21 HOH B O 1
HETATM 272 O O . HOH D 3 . ? 1.202 3.005 -7.890 1.00 24.83 ? 22 HOH B O 1
HETATM 273 O O . HOH D 3 . ? 4.436 2.076 1.661 1.00 23.83 ? 23 HOH B O 1
HETATM 274 O O . HOH D 3 . ? 13.109 1.172 -8.213 1.00 39.10 ? 24 HOH B O 1
HETATM 275 O O . HOH D 3 . ? 12.645 4.388 -11.633 1.00 35.60 ? 25 HOH B O 1
HETATM 276 O O . HOH D 3 . ? 12.037 -5.556 -3.247 1.00 29.33 ? 26 HOH B O 1
HETATM 277 O O . HOH D 3 . ? 12.735 6.647 -5.382 1.00 22.51 ? 28 HOH B O 1
HETATM 278 O O . HOH D 3 . ? 7.707 5.994 -0.163 1.00 28.80 ? 30 HOH B O 1
HETATM 279 O O . HOH D 3 . ? 4.920 9.456 -14.210 1.00 23.38 ? 33 HOH B O 1
HETATM 280 O O . HOH D 3 . ? 6.670 7.980 -14.085 1.00 33.26 ? 34 HOH B O 1
HETATM 281 O O . HOH D 3 . ? 7.034 3.757 0.218 1.00 27.06 ? 35 HOH B O 1
HETATM 282 O O . HOH D 3 . ? 2.756 4.625 -4.525 1.00 28.67 ? 36 HOH B O 1
#