data_3FX8
#
_entry.id 3FX8
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3FX8 pdb_00003fx8 10.2210/pdb3fx8/pdb
NDB BD0109 ? ?
RCSB RCSB051153 ? ?
WWPDB D_1000051153 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2010-03-16
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2024-02-21
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp_atom
2 3 'Structure model' chem_comp_bond
3 3 'Structure model' database_2
4 3 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
3 3 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 3 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 3 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3FX8
_pdbx_database_status.recvd_initial_deposition_date 2009-01-20
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 2ET0
;Recognition of three-way DNA junctions by a metallo-supramolecular cylinder ('helicate') at two distinct sites
;
unspecified
PDB 3FX9
;Distinct recognition of three-way DNA junctions by the two enantiomers of a metallo-supramolecular cylinder ('helicate')
;
unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Boer, D.R.' 1
'Uson, I.' 2
'Coll, M.' 3
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary
;Self-Assembly of Functionalizable Two-Component 3D DNA Arrays through the Induced Formation of DNA Three-Way-Junction Branch Points by Supramolecular Cylinders.
;
Angew.Chem.Int.Ed.Engl. 49 2336 2339 2010 ? GE 1433-7851 9999 ? 20191645 10.1002/anie.200906742
1 'Molecular recognition of a three-way DNA junction by a metallosupramolecular helicate.' Angew.Chem.Int.Ed.Engl. 45 1227
1231 2006 ? GE 1433-7851 9999 ? 16463312 10.1002/anie.200503822
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Boer, D.R.' 1 ?
primary 'Kerckhoffs, J.M.' 2 ?
primary 'Parajo, Y.' 3 ?
primary 'Pascu, M.' 4 ?
primary 'Uson, I.' 5 ?
primary 'Lincoln, P.' 6 ?
primary 'Hannon, M.J.' 7 ?
primary 'Coll, M.' 8 ?
1 'Oleksy, A.' 9 ?
1 'Blanco, A.G.' 10 ?
1 'Boer, R.' 11 ?
1 'Uson, I.' 12 ?
1 'Aymami, J.' 13 ?
1 'Rodger, A.' 14 ?
1 'Hannon, M.J.' 15 ?
1 'Coll, M.' 16 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "(5'-D(*CP*GP*TP*AP*CP*G)-3'" 1809.217 1 ? ? ? 'Synthetic hexanucleotide'
2 non-polymer syn 'FE (II) ION' 55.845 4 ? ? ? ?
3 non-polymer syn "4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline}" 394.492 2 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGTACG
_entity_poly.pdbx_strand_id C
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'FE (II) ION' FE2
3 "4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline}" 5PM
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DT n
1 4 DA n
1 5 DC n
1 6 DG n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'Synthetic hexanucleotide. The sequence is palindromic'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
5PM non-polymer . "4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline}"
'1,1-Bis(N-(4-phenyl)-2-pyridylcarboxaldimine)thioether' 'C24 H18 N4 S' 394.492
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
FE2 non-polymer . 'FE (II) ION' ? 'Fe 2' 55.845
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C C . n
A 1 2 DG 2 2 2 DG G C . n
A 1 3 DT 3 3 3 DT T C . n
A 1 4 DA 4 4 4 DA A C . n
A 1 5 DC 5 5 5 DC C C . n
A 1 6 DG 6 6 6 DG G C . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE2 1 101 1 FE2 5PM C .
C 2 FE2 1 102 1 FE2 5PM C .
D 2 FE2 1 201 1 FE2 5PM C .
E 2 FE2 1 202 1 FE2 5PM C .
F 3 5PM 1 111 1 5PM 5PM C .
G 3 5PM 1 211 1 5PM 5PM C .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
ProDC 'data collection' . ? 1
SHELXDE phasing . ? 2
SHELXL-97 refinement . ? 3
MOSFLM 'data reduction' . ? 4
SCALA 'data scaling' . ? 5
#
_cell.entry_id 3FX8
_cell.length_a 49.249
_cell.length_b 49.249
_cell.length_c 49.249
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3FX8
_symmetry.space_group_name_H-M 'P 21 3'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 198
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 3FX8
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 5.50
_exptl_crystal.density_percent_sol 77.64
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 8.5
_exptl_crystal_grow.pdbx_details
;1 microliter of 10 mM cylinder, 1 microliter of 3 mM DNA, 2 microliters of crystallization buffer (10 mM Magnesium chloride, 5% v/v Isopropanol, 50 mM Tris-HCl), pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
;
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 'Magnesium chloride' ? ? ?
1 2 1 Isopropanol ? ? ?
1 3 1 Tris-HCl ? ? ?
1 4 2 'Magnesium chloride' ? ? ?
1 5 2 Isopropanol ? ? ?
1 6 2 Tris-HCl ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.pdbx_collection_date 2006-02-23
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'Si(111)'
_diffrn_radiation.pdbx_diffrn_protocol MAD
_diffrn_radiation.pdbx_scattering_type x-ray
#
loop_
_diffrn_radiation_wavelength.id
_diffrn_radiation_wavelength.wavelength
_diffrn_radiation_wavelength.wt
1 1.7366 1.0
2 1.7410 1.0
3 1.7311 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID29'
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID29
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list '1.7366, 1.7410, 1.7311'
#
_reflns.entry_id 3FX8
_reflns.observed_criterion_sigma_I -3
_reflns.observed_criterion_sigma_F 0
_reflns.d_resolution_low 24.63
_reflns.d_resolution_high 2.44
_reflns.number_obs 1573
_reflns.number_all 1573
_reflns.percent_possible_obs 99.4
_reflns.pdbx_Rmerge_I_obs 0.041
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 36.1
_reflns.B_iso_Wilson_estimate 94
_reflns.pdbx_redundancy 8.4
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 2.44
_reflns_shell.d_res_low 2.58
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_obs 0.447
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 2.2
_reflns_shell.pdbx_redundancy 5.1
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 228
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 3FX8
_refine.ls_number_reflns_obs 1540
_refine.ls_number_reflns_all 1573
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 24.63
_refine.ls_d_res_high 2.44
_refine.ls_percent_reflns_obs 98
_refine.ls_R_factor_obs 0.187
_refine.ls_R_factor_all 0.187
_refine.ls_R_factor_R_work 0.187
_refine.ls_R_factor_R_free 0.212
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free 74
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean 79.4
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details 'BABINET (SHELXL SWAT)'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct MAD
_refine.pdbx_isotropic_thermal_model isotropic
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details Random
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 62
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 182
_refine_hist.d_res_high 2.44
_refine_hist.d_res_low 24.63
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
s_angle_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ?
s_anti_bump_dis_restr 0.005 ? ? ? 'X-RAY DIFFRACTION' ?
s_non_zero_chiral_vol 0.006 ? ? ? 'X-RAY DIFFRACTION' ?
s_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ?
s_from_restr_planes 0.031 ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used ?
_refine_ls_shell.d_res_high 2.44
_refine_ls_shell.d_res_low 2.55
_refine_ls_shell.number_reflns_R_work ?
_refine_ls_shell.R_factor_R_work 0.358
_refine_ls_shell.percent_reflns_obs ?
_refine_ls_shell.R_factor_R_free ?
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs 165
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_database_PDB_matrix.entry_id 3FX8
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 3FX8
_struct.title
;Distinct recognition of three-way DNA junctions by a thioester variant of a metallo-supramolecular cylinder ('helicate')
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3FX8
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Self-assembly, DNA-based nanomaterial, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 2 ?
E N N 2 ?
F N N 3 ?
G N N 3 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 3FX8
_struct_ref.pdbx_db_accession 3FX8
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code CGTACG
_struct_ref.pdbx_align_begin 1
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3FX8
_struct_ref_seq.pdbx_strand_id C
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 3FX8
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details trimeric
_pdbx_struct_assembly.oligomeric_count 3
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 4580 ?
1 MORE -68.9 ?
1 'SSA (A^2)' 2430 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 6_467 z-1/2,-x+3/2,-y+2 0.0000000000 0.0000000000 1.0000000000 -24.6245000000 -1.0000000000
0.0000000000 0.0000000000 73.8735000000 0.0000000000 -1.0000000000 0.0000000000 98.4980000000
3 'crystal symmetry operation' 12_675 -y+3/2,-z+2,x+1/2 0.0000000000 -1.0000000000 0.0000000000 73.8735000000 0.0000000000
0.0000000000 -1.0000000000 98.4980000000 1.0000000000 0.0000000000 0.0000000000 24.6245000000
#
loop_
_struct_biol.id
_struct_biol.details
1 ?
2
;A THREE-WAY JUNCTION (CHAINS A AND C) WITH DISCONTINUOUS DNA STRANDS CAN BE GENERATED THROUGH THE FOLLOWING TRANSFORMATIONS ON CHAIN C: [Z+1/2,-X+1/2,-Y+(0 1 1)], [Y+1/2,-Z+1/2,-X+(-1 1 1)], [-X, Y+1/2,-Z+1/2+(0 1 0)], [-Z,X+1/2,-Y+1/2+(0 1 1)], [Y,Z,X+(0 2 1)] AND THE FOLLOWING TRANSFORMATIONS ON CHAIN A: [-Z,X+1/2,-Y+1/2 +(0 1 1)], [Y+1/2,-Z+1/2,-X +(-1 1 1)]
;
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? B FE2 . FE ? ? ? 1_555 F 5PM . N11 ? ? C FE2 101 C 5PM 111 1_555 ? ? ? ? ? ? ? 1.982 ? ?
metalc2 metalc ? ? B FE2 . FE ? ? ? 1_555 F 5PM . N12 ? ? C FE2 101 C 5PM 111 1_555 ? ? ? ? ? ? ? 1.936 ? ?
metalc3 metalc ? ? C FE2 . FE ? ? ? 1_555 F 5PM . N13 ? ? C FE2 102 C 5PM 111 1_555 ? ? ? ? ? ? ? 1.982 ? ?
metalc4 metalc ? ? C FE2 . FE ? ? ? 1_555 F 5PM . N14 ? ? C FE2 102 C 5PM 111 1_555 ? ? ? ? ? ? ? 1.977 ? ?
metalc5 metalc ? ? D FE2 . FE ? ? ? 1_555 G 5PM . N11 ? ? C FE2 201 C 5PM 211 1_555 ? ? ? ? ? ? ? 1.989 ? ?
metalc6 metalc ? ? D FE2 . FE ? ? ? 1_555 G 5PM . N12 ? ? C FE2 201 C 5PM 211 1_555 ? ? ? ? ? ? ? 1.957 ? ?
metalc7 metalc ? ? E FE2 . FE ? ? ? 1_555 G 5PM . N13 ? ? C FE2 202 C 5PM 211 1_555 ? ? ? ? ? ? ? 1.990 ? ?
metalc8 metalc ? ? E FE2 . FE ? ? ? 1_555 G 5PM . N14 ? ? C FE2 202 C 5PM 211 1_555 ? ? ? ? ? ? ? 1.969 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? C DC 1 C DG 6 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? C DC 1 C DG 6 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? C DC 1 C DG 6 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? C DG 2 C DC 5 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? C DG 2 C DC 5 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? C DG 2 C DC 5 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? C DT 3 C DA 4 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? C DT 3 C DA 4 6_467 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 N11 ? F 5PM . ? C 5PM 111 ? 1_555 FE ? B FE2 . ? C FE2 101 ? 1_555 N12 ? F 5PM . ? C 5PM 111 ? 1_555 81.7 ?
2 N13 ? F 5PM . ? C 5PM 111 ? 1_555 FE ? C FE2 . ? C FE2 102 ? 1_555 N14 ? F 5PM . ? C 5PM 111 ? 1_555 80.9 ?
3 N11 ? G 5PM . ? C 5PM 211 ? 1_555 FE ? D FE2 . ? C FE2 201 ? 1_555 N12 ? G 5PM . ? C 5PM 211 ? 1_555 81.1 ?
4 N13 ? G 5PM . ? C 5PM 211 ? 1_555 FE ? E FE2 . ? C FE2 202 ? 1_555 N14 ? G 5PM . ? C 5PM 211 ? 1_555 81.1 ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software C FE2 101 ? 3 'BINDING SITE FOR RESIDUE FE2 C 101'
AC2 Software C FE2 102 ? 3 'BINDING SITE FOR RESIDUE FE2 C 102'
AC3 Software C FE2 201 ? 3 'BINDING SITE FOR RESIDUE FE2 C 201'
AC4 Software C FE2 202 ? 3 'BINDING SITE FOR RESIDUE FE2 C 202'
AC5 Software C 5PM 111 ? 8 'BINDING SITE FOR RESIDUE 5PM C 111'
AC6 Software C 5PM 211 ? 10 'BINDING SITE FOR RESIDUE 5PM C 211'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 3 5PM F . ? 5PM C 111 . ? 8_667 ?
2 AC1 3 5PM F . ? 5PM C 111 . ? 11_376 ?
3 AC1 3 5PM F . ? 5PM C 111 . ? 1_555 ?
4 AC2 3 5PM F . ? 5PM C 111 . ? 1_555 ?
5 AC2 3 5PM F . ? 5PM C 111 . ? 8_667 ?
6 AC2 3 5PM F . ? 5PM C 111 . ? 11_376 ?
7 AC3 3 5PM G . ? 5PM C 211 . ? 1_555 ?
8 AC3 3 5PM G . ? 5PM C 211 . ? 6_467 ?
9 AC3 3 5PM G . ? 5PM C 211 . ? 12_675 ?
10 AC4 3 5PM G . ? 5PM C 211 . ? 12_675 ?
11 AC4 3 5PM G . ? 5PM C 211 . ? 1_555 ?
12 AC4 3 5PM G . ? 5PM C 211 . ? 6_467 ?
13 AC5 8 DC A 1 ? DC C 1 . ? 11_376 ?
14 AC5 8 DG A 6 ? DG C 6 . ? 6_467 ?
15 AC5 8 FE2 B . ? FE2 C 101 . ? 11_376 ?
16 AC5 8 FE2 B . ? FE2 C 101 . ? 8_667 ?
17 AC5 8 FE2 B . ? FE2 C 101 . ? 1_555 ?
18 AC5 8 FE2 C . ? FE2 C 102 . ? 11_376 ?
19 AC5 8 FE2 C . ? FE2 C 102 . ? 8_667 ?
20 AC5 8 FE2 C . ? FE2 C 102 . ? 1_555 ?
21 AC6 10 DT A 3 ? DT C 3 . ? 1_555 ?
22 AC6 10 DA A 4 ? DA C 4 . ? 1_555 ?
23 AC6 10 DA A 4 ? DA C 4 . ? 12_675 ?
24 AC6 10 DC A 5 ? DC C 5 . ? 1_555 ?
25 AC6 10 FE2 D . ? FE2 C 201 . ? 1_555 ?
26 AC6 10 FE2 D . ? FE2 C 201 . ? 12_675 ?
27 AC6 10 FE2 D . ? FE2 C 201 . ? 6_467 ?
28 AC6 10 FE2 E . ? FE2 C 202 . ? 12_675 ?
29 AC6 10 FE2 E . ? FE2 C 202 . ? 6_467 ?
30 AC6 10 FE2 E . ? FE2 C 202 . ? 1_555 ?
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" C DG 2 ? ? "C4'" C DG 2 ? ? "C3'" C DG 2 ? ? 99.41 104.50 -5.09 0.40 N
2 1 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 112.61 108.30 4.31 0.30 N
3 1 "O4'" C DC 5 ? ? "C4'" C DC 5 ? ? "C3'" C DC 5 ? ? 102.03 104.50 -2.47 0.40 N
4 1 "C3'" C DC 5 ? ? "O3'" C DC 5 ? ? P C DG 6 ? ? 128.58 119.70 8.88 1.20 Y
5 1 "C3'" C DG 6 ? ? "C2'" C DG 6 ? ? "C1'" C DG 6 ? ? 97.04 102.40 -5.36 0.80 N
6 1 "O4'" C DG 6 ? ? "C1'" C DG 6 ? ? N9 C DG 6 ? ? 110.25 108.30 1.95 0.30 N
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 C FE2 101 ? B FE2 .
2 1 C FE2 102 ? C FE2 .
3 1 C FE2 201 ? D FE2 .
4 1 C FE2 202 ? E FE2 .
#
_pdbx_entry_details.entry_id 3FX8
_pdbx_entry_details.nonpolymer_details
;LIGAND 5PM C 111 WITH TWO IRON ATOMS FE2 C 101 AND C 102
IS THE M HELICAL ENANTIOMER OF [FE2L3], WHERE L IS
4,4'-SULFANEDIYLBIS{N-[(1E)-PYRIDIN-2-YLMETHYLIDENE]ANILINE}
;
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
5PM N11 N Y N 1
5PM N12 N N N 2
5PM N13 N N N 3
5PM N14 N Y N 4
5PM C1A C Y N 5
5PM C1B C Y N 6
5PM C1C C Y N 7
5PM C1D C Y N 8
5PM C1E C Y N 9
5PM C1F C N N 10
5PM C1G C Y N 11
5PM C1H C Y N 12
5PM C1I C Y N 13
5PM C1J C Y N 14
5PM C1K C Y N 15
5PM C1L C Y N 16
5PM S1M S N N 17
5PM C1N C Y N 18
5PM C1O C Y N 19
5PM C1P C Y N 20
5PM C1Q C Y N 21
5PM C1R C Y N 22
5PM C1S C Y N 23
5PM C1T C N N 24
5PM C1U C Y N 25
5PM C1V C Y N 26
5PM C1W C Y N 27
5PM C1X C Y N 28
5PM C1Y C Y N 29
5PM H1A H N N 30
5PM H1B H N N 31
5PM H1C H N N 32
5PM H1D H N N 33
5PM H1F H N N 34
5PM H1H H N N 35
5PM H1I H N N 36
5PM H1K H N N 37
5PM H1L H N N 38
5PM H1O H N N 39
5PM H1P H N N 40
5PM H1R H N N 41
5PM H1S H N N 42
5PM H1T H N N 43
5PM H1V H N N 44
5PM H1W H N N 45
5PM H1X H N N 46
5PM H1Y H N N 47
DA OP3 O N N 48
DA P P N N 49
DA OP1 O N N 50
DA OP2 O N N 51
DA "O5'" O N N 52
DA "C5'" C N N 53
DA "C4'" C N R 54
DA "O4'" O N N 55
DA "C3'" C N S 56
DA "O3'" O N N 57
DA "C2'" C N N 58
DA "C1'" C N R 59
DA N9 N Y N 60
DA C8 C Y N 61
DA N7 N Y N 62
DA C5 C Y N 63
DA C6 C Y N 64
DA N6 N N N 65
DA N1 N Y N 66
DA C2 C Y N 67
DA N3 N Y N 68
DA C4 C Y N 69
DA HOP3 H N N 70
DA HOP2 H N N 71
DA "H5'" H N N 72
DA "H5''" H N N 73
DA "H4'" H N N 74
DA "H3'" H N N 75
DA "HO3'" H N N 76
DA "H2'" H N N 77
DA "H2''" H N N 78
DA "H1'" H N N 79
DA H8 H N N 80
DA H61 H N N 81
DA H62 H N N 82
DA H2 H N N 83
DC OP3 O N N 84
DC P P N N 85
DC OP1 O N N 86
DC OP2 O N N 87
DC "O5'" O N N 88
DC "C5'" C N N 89
DC "C4'" C N R 90
DC "O4'" O N N 91
DC "C3'" C N S 92
DC "O3'" O N N 93
DC "C2'" C N N 94
DC "C1'" C N R 95
DC N1 N N N 96
DC C2 C N N 97
DC O2 O N N 98
DC N3 N N N 99
DC C4 C N N 100
DC N4 N N N 101
DC C5 C N N 102
DC C6 C N N 103
DC HOP3 H N N 104
DC HOP2 H N N 105
DC "H5'" H N N 106
DC "H5''" H N N 107
DC "H4'" H N N 108
DC "H3'" H N N 109
DC "HO3'" H N N 110
DC "H2'" H N N 111
DC "H2''" H N N 112
DC "H1'" H N N 113
DC H41 H N N 114
DC H42 H N N 115
DC H5 H N N 116
DC H6 H N N 117
DG OP3 O N N 118
DG P P N N 119
DG OP1 O N N 120
DG OP2 O N N 121
DG "O5'" O N N 122
DG "C5'" C N N 123
DG "C4'" C N R 124
DG "O4'" O N N 125
DG "C3'" C N S 126
DG "O3'" O N N 127
DG "C2'" C N N 128
DG "C1'" C N R 129
DG N9 N Y N 130
DG C8 C Y N 131
DG N7 N Y N 132
DG C5 C Y N 133
DG C6 C N N 134
DG O6 O N N 135
DG N1 N N N 136
DG C2 C N N 137
DG N2 N N N 138
DG N3 N N N 139
DG C4 C Y N 140
DG HOP3 H N N 141
DG HOP2 H N N 142
DG "H5'" H N N 143
DG "H5''" H N N 144
DG "H4'" H N N 145
DG "H3'" H N N 146
DG "HO3'" H N N 147
DG "H2'" H N N 148
DG "H2''" H N N 149
DG "H1'" H N N 150
DG H8 H N N 151
DG H1 H N N 152
DG H21 H N N 153
DG H22 H N N 154
DT OP3 O N N 155
DT P P N N 156
DT OP1 O N N 157
DT OP2 O N N 158
DT "O5'" O N N 159
DT "C5'" C N N 160
DT "C4'" C N R 161
DT "O4'" O N N 162
DT "C3'" C N S 163
DT "O3'" O N N 164
DT "C2'" C N N 165
DT "C1'" C N R 166
DT N1 N N N 167
DT C2 C N N 168
DT O2 O N N 169
DT N3 N N N 170
DT C4 C N N 171
DT O4 O N N 172
DT C5 C N N 173
DT C7 C N N 174
DT C6 C N N 175
DT HOP3 H N N 176
DT HOP2 H N N 177
DT "H5'" H N N 178
DT "H5''" H N N 179
DT "H4'" H N N 180
DT "H3'" H N N 181
DT "HO3'" H N N 182
DT "H2'" H N N 183
DT "H2''" H N N 184
DT "H1'" H N N 185
DT H3 H N N 186
DT H71 H N N 187
DT H72 H N N 188
DT H73 H N N 189
DT H6 H N N 190
FE2 FE FE N N 191
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5PM C1A N11 doub Y N 1
5PM N11 C1E sing Y N 2
5PM C1F N12 doub N N 3
5PM N12 C1G sing N N 4
5PM C1Q N13 sing N N 5
5PM N13 C1T doub N N 6
5PM N14 C1Y doub Y N 7
5PM N14 C1U sing Y N 8
5PM C1B C1A sing Y N 9
5PM C1A H1A sing N N 10
5PM C1B C1C doub Y N 11
5PM C1B H1B sing N N 12
5PM C1C C1D sing Y N 13
5PM C1C H1C sing N N 14
5PM C1D C1E doub Y N 15
5PM C1D H1D sing N N 16
5PM C1E C1F sing N N 17
5PM C1F H1F sing N N 18
5PM C1G C1L doub Y N 19
5PM C1G C1H sing Y N 20
5PM C1H C1I doub Y N 21
5PM C1H H1H sing N N 22
5PM C1I C1J sing Y N 23
5PM C1I H1I sing N N 24
5PM C1K C1J doub Y N 25
5PM C1J S1M sing N N 26
5PM C1L C1K sing Y N 27
5PM C1K H1K sing N N 28
5PM C1L H1L sing N N 29
5PM S1M C1N sing N N 30
5PM C1S C1N doub Y N 31
5PM C1N C1O sing Y N 32
5PM C1O C1P doub Y N 33
5PM C1O H1O sing N N 34
5PM C1Q C1P sing Y N 35
5PM C1P H1P sing N N 36
5PM C1R C1Q doub Y N 37
5PM C1S C1R sing Y N 38
5PM C1R H1R sing N N 39
5PM C1S H1S sing N N 40
5PM C1T C1U sing N N 41
5PM C1T H1T sing N N 42
5PM C1U C1V doub Y N 43
5PM C1V C1W sing Y N 44
5PM C1V H1V sing N N 45
5PM C1X C1W doub Y N 46
5PM C1W H1W sing N N 47
5PM C1Y C1X sing Y N 48
5PM C1X H1X sing N N 49
5PM C1Y H1Y sing N N 50
DA OP3 P sing N N 51
DA OP3 HOP3 sing N N 52
DA P OP1 doub N N 53
DA P OP2 sing N N 54
DA P "O5'" sing N N 55
DA OP2 HOP2 sing N N 56
DA "O5'" "C5'" sing N N 57
DA "C5'" "C4'" sing N N 58
DA "C5'" "H5'" sing N N 59
DA "C5'" "H5''" sing N N 60
DA "C4'" "O4'" sing N N 61
DA "C4'" "C3'" sing N N 62
DA "C4'" "H4'" sing N N 63
DA "O4'" "C1'" sing N N 64
DA "C3'" "O3'" sing N N 65
DA "C3'" "C2'" sing N N 66
DA "C3'" "H3'" sing N N 67
DA "O3'" "HO3'" sing N N 68
DA "C2'" "C1'" sing N N 69
DA "C2'" "H2'" sing N N 70
DA "C2'" "H2''" sing N N 71
DA "C1'" N9 sing N N 72
DA "C1'" "H1'" sing N N 73
DA N9 C8 sing Y N 74
DA N9 C4 sing Y N 75
DA C8 N7 doub Y N 76
DA C8 H8 sing N N 77
DA N7 C5 sing Y N 78
DA C5 C6 sing Y N 79
DA C5 C4 doub Y N 80
DA C6 N6 sing N N 81
DA C6 N1 doub Y N 82
DA N6 H61 sing N N 83
DA N6 H62 sing N N 84
DA N1 C2 sing Y N 85
DA C2 N3 doub Y N 86
DA C2 H2 sing N N 87
DA N3 C4 sing Y N 88
DC OP3 P sing N N 89
DC OP3 HOP3 sing N N 90
DC P OP1 doub N N 91
DC P OP2 sing N N 92
DC P "O5'" sing N N 93
DC OP2 HOP2 sing N N 94
DC "O5'" "C5'" sing N N 95
DC "C5'" "C4'" sing N N 96
DC "C5'" "H5'" sing N N 97
DC "C5'" "H5''" sing N N 98
DC "C4'" "O4'" sing N N 99
DC "C4'" "C3'" sing N N 100
DC "C4'" "H4'" sing N N 101
DC "O4'" "C1'" sing N N 102
DC "C3'" "O3'" sing N N 103
DC "C3'" "C2'" sing N N 104
DC "C3'" "H3'" sing N N 105
DC "O3'" "HO3'" sing N N 106
DC "C2'" "C1'" sing N N 107
DC "C2'" "H2'" sing N N 108
DC "C2'" "H2''" sing N N 109
DC "C1'" N1 sing N N 110
DC "C1'" "H1'" sing N N 111
DC N1 C2 sing N N 112
DC N1 C6 sing N N 113
DC C2 O2 doub N N 114
DC C2 N3 sing N N 115
DC N3 C4 doub N N 116
DC C4 N4 sing N N 117
DC C4 C5 sing N N 118
DC N4 H41 sing N N 119
DC N4 H42 sing N N 120
DC C5 C6 doub N N 121
DC C5 H5 sing N N 122
DC C6 H6 sing N N 123
DG OP3 P sing N N 124
DG OP3 HOP3 sing N N 125
DG P OP1 doub N N 126
DG P OP2 sing N N 127
DG P "O5'" sing N N 128
DG OP2 HOP2 sing N N 129
DG "O5'" "C5'" sing N N 130
DG "C5'" "C4'" sing N N 131
DG "C5'" "H5'" sing N N 132
DG "C5'" "H5''" sing N N 133
DG "C4'" "O4'" sing N N 134
DG "C4'" "C3'" sing N N 135
DG "C4'" "H4'" sing N N 136
DG "O4'" "C1'" sing N N 137
DG "C3'" "O3'" sing N N 138
DG "C3'" "C2'" sing N N 139
DG "C3'" "H3'" sing N N 140
DG "O3'" "HO3'" sing N N 141
DG "C2'" "C1'" sing N N 142
DG "C2'" "H2'" sing N N 143
DG "C2'" "H2''" sing N N 144
DG "C1'" N9 sing N N 145
DG "C1'" "H1'" sing N N 146
DG N9 C8 sing Y N 147
DG N9 C4 sing Y N 148
DG C8 N7 doub Y N 149
DG C8 H8 sing N N 150
DG N7 C5 sing Y N 151
DG C5 C6 sing N N 152
DG C5 C4 doub Y N 153
DG C6 O6 doub N N 154
DG C6 N1 sing N N 155
DG N1 C2 sing N N 156
DG N1 H1 sing N N 157
DG C2 N2 sing N N 158
DG C2 N3 doub N N 159
DG N2 H21 sing N N 160
DG N2 H22 sing N N 161
DG N3 C4 sing N N 162
DT OP3 P sing N N 163
DT OP3 HOP3 sing N N 164
DT P OP1 doub N N 165
DT P OP2 sing N N 166
DT P "O5'" sing N N 167
DT OP2 HOP2 sing N N 168
DT "O5'" "C5'" sing N N 169
DT "C5'" "C4'" sing N N 170
DT "C5'" "H5'" sing N N 171
DT "C5'" "H5''" sing N N 172
DT "C4'" "O4'" sing N N 173
DT "C4'" "C3'" sing N N 174
DT "C4'" "H4'" sing N N 175
DT "O4'" "C1'" sing N N 176
DT "C3'" "O3'" sing N N 177
DT "C3'" "C2'" sing N N 178
DT "C3'" "H3'" sing N N 179
DT "O3'" "HO3'" sing N N 180
DT "C2'" "C1'" sing N N 181
DT "C2'" "H2'" sing N N 182
DT "C2'" "H2''" sing N N 183
DT "C1'" N1 sing N N 184
DT "C1'" "H1'" sing N N 185
DT N1 C2 sing N N 186
DT N1 C6 sing N N 187
DT C2 O2 doub N N 188
DT C2 N3 sing N N 189
DT N3 C4 sing N N 190
DT N3 H3 sing N N 191
DT C4 O4 doub N N 192
DT C4 C5 sing N N 193
DT C5 C7 sing N N 194
DT C5 C6 doub N N 195
DT C7 H71 sing N N 196
DT C7 H72 sing N N 197
DT C7 H73 sing N N 198
DT C6 H6 sing N N 199
#
_ndb_struct_conf_na.entry_id 3FX8
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 6_467 0.155 -0.201 0.598 -6.488 -0.020 -8.368 1 C_DC1:DG6_C C 1 ? C 6 ? 19 1
1 A DG 2 1_555 A DC 5 6_467 -0.098 -0.134 0.724 6.535 -18.819 2.276 2 C_DG2:DC5_C C 2 ? C 5 ? 19 1
1 A DT 3 1_555 A DA 4 6_467 -0.011 0.030 0.080 4.765 -16.856 -4.041 3 C_DT3:DA4_C C 3 ? C 4 ? 20 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 6_467 A DG 2 1_555 A DC 5 6_467 -0.063 0.591 2.982 2.352 2.499 32.098 0.657 0.496 3.006 4.504 -4.239
32.277 1 CC_DC1DG2:DC5DG6_CC C 1 ? C 6 ? C 2 ? C 5 ?
1 A DG 2 1_555 A DC 5 6_467 A DT 3 1_555 A DA 4 6_467 0.372 -0.587 3.333 3.459 -1.315 32.690 -0.806 -0.050 3.374 -2.327 -6.121
32.893 2 CC_DG2DT3:DA4DC5_CC C 2 ? C 5 ? C 3 ? C 4 ?
#
_atom_sites.entry_id 3FX8
_atom_sites.fract_transf_matrix[1][1] 0.020305
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.020305
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.020305
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
FE
N
O
P
S
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 9.529 69.761 48.578 1.00 80.61 ? 1 DC C "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 9.244 70.973 47.862 1.00 88.06 ? 1 DC C "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 7.809 70.961 47.393 1.00 89.95 ? 1 DC C "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 7.561 72.000 46.415 1.00 89.28 ? 1 DC C "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 7.389 69.662 46.706 1.00 94.09 ? 1 DC C "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 6.082 69.301 47.123 1.00 99.21 ? 1 DC C "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 7.477 69.982 45.233 1.00 90.80 ? 1 DC C "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 7.030 71.435 45.217 1.00 84.74 ? 1 DC C "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 7.520 72.242 44.089 1.00 78.44 ? 1 DC C N1 1
ATOM 10 C C2 . DC A 1 1 ? 6.583 72.691 43.153 1.00 75.45 ? 1 DC C C2 1
ATOM 11 O O2 . DC A 1 1 ? 5.395 72.380 43.337 1.00 84.21 ? 1 DC C O2 1
ATOM 12 N N3 . DC A 1 1 ? 7.007 73.435 42.108 1.00 75.75 ? 1 DC C N3 1
ATOM 13 C C4 . DC A 1 1 ? 8.297 73.746 41.956 1.00 73.23 ? 1 DC C C4 1
ATOM 14 N N4 . DC A 1 1 ? 8.655 74.487 40.900 1.00 51.76 ? 1 DC C N4 1
ATOM 15 C C5 . DC A 1 1 ? 9.273 73.301 42.892 1.00 68.48 ? 1 DC C C5 1
ATOM 16 C C6 . DC A 1 1 ? 8.837 72.565 43.923 1.00 74.56 ? 1 DC C C6 1
ATOM 17 P P . DG A 1 2 ? 5.638 67.760 47.265 1.00 97.08 ? 2 DG C P 1
ATOM 18 O OP1 . DG A 1 2 ? 5.788 67.326 48.682 1.00 103.65 ? 2 DG C OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 6.286 66.948 46.202 1.00 101.10 ? 2 DG C OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 4.077 67.856 46.954 1.00 89.97 ? 2 DG C "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 3.348 66.847 46.293 1.00 86.60 ? 2 DG C "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 3.153 67.094 44.835 1.00 94.54 ? 2 DG C "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 3.752 68.318 44.317 1.00 101.47 ? 2 DG C "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 3.840 66.073 43.922 1.00 104.39 ? 2 DG C "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 3.301 64.769 44.059 1.00 108.00 ? 2 DG C "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 3.578 66.718 42.581 1.00 105.42 ? 2 DG C "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 3.756 68.209 42.893 1.00 96.47 ? 2 DG C "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 4.991 68.705 42.296 1.00 78.58 ? 2 DG C N9 1
ATOM 29 C C8 . DG A 1 2 ? 6.292 68.389 42.601 1.00 77.81 ? 2 DG C C8 1
ATOM 30 N N7 . DG A 1 2 ? 7.170 69.022 41.864 1.00 70.92 ? 2 DG C N7 1
ATOM 31 C C5 . DG A 1 2 ? 6.404 69.812 41.012 1.00 64.60 ? 2 DG C C5 1
ATOM 32 C C6 . DG A 1 2 ? 6.784 70.718 39.988 1.00 62.35 ? 2 DG C C6 1
ATOM 33 O O6 . DG A 1 2 ? 7.911 71.045 39.584 1.00 68.35 ? 2 DG C O6 1
ATOM 34 N N1 . DG A 1 2 ? 5.682 71.303 39.377 1.00 52.15 ? 2 DG C N1 1
ATOM 35 C C2 . DG A 1 2 ? 4.376 71.041 39.717 1.00 56.99 ? 2 DG C C2 1
ATOM 36 N N2 . DG A 1 2 ? 3.444 71.706 39.012 1.00 47.82 ? 2 DG C N2 1
ATOM 37 N N3 . DG A 1 2 ? 4.007 70.202 40.666 1.00 59.46 ? 2 DG C N3 1
ATOM 38 C C4 . DG A 1 2 ? 5.063 69.624 41.270 1.00 64.36 ? 2 DG C C4 1
ATOM 39 P P . DT A 1 3 ? 1.930 64.462 43.263 1.00 102.24 ? 3 DT C P 1
ATOM 40 O OP1 . DT A 1 3 ? 1.081 65.686 43.316 1.00 103.75 ? 3 DT C OP1 1
ATOM 41 O OP2 . DT A 1 3 ? 1.381 63.159 43.714 1.00 106.07 ? 3 DT C OP2 1
ATOM 42 O "O5'" . DT A 1 3 ? 2.440 64.299 41.758 1.00 95.34 ? 3 DT C "O5'" 1
ATOM 43 C "C5'" . DT A 1 3 ? 1.523 64.142 40.690 1.00 87.19 ? 3 DT C "C5'" 1
ATOM 44 C "C4'" . DT A 1 3 ? 1.241 65.421 39.941 1.00 80.30 ? 3 DT C "C4'" 1
ATOM 45 O "O4'" . DT A 1 3 ? 2.308 66.373 40.103 1.00 81.85 ? 3 DT C "O4'" 1
ATOM 46 C "C3'" . DT A 1 3 ? 1.086 65.189 38.438 1.00 83.11 ? 3 DT C "C3'" 1
ATOM 47 O "O3'" . DT A 1 3 ? -0.292 65.337 38.067 1.00 86.71 ? 3 DT C "O3'" 1
ATOM 48 C "C2'" . DT A 1 3 ? 1.978 66.195 37.767 1.00 73.67 ? 3 DT C "C2'" 1
ATOM 49 C "C1'" . DT A 1 3 ? 2.552 67.044 38.875 1.00 72.53 ? 3 DT C "C1'" 1
ATOM 50 N N1 . DT A 1 3 ? 4.011 67.228 38.780 1.00 54.94 ? 3 DT C N1 1
ATOM 51 C C2 . DT A 1 3 ? 4.526 68.196 37.955 1.00 64.22 ? 3 DT C C2 1
ATOM 52 O O2 . DT A 1 3 ? 3.862 68.958 37.261 1.00 69.76 ? 3 DT C O2 1
ATOM 53 N N3 . DT A 1 3 ? 5.901 68.262 37.956 1.00 60.59 ? 3 DT C N3 1
ATOM 54 C C4 . DT A 1 3 ? 6.765 67.470 38.686 1.00 58.12 ? 3 DT C C4 1
ATOM 55 O O4 . DT A 1 3 ? 7.979 67.639 38.592 1.00 72.36 ? 3 DT C O4 1
ATOM 56 C C5 . DT A 1 3 ? 6.142 66.477 39.527 1.00 48.16 ? 3 DT C C5 1
ATOM 57 C C7 . DT A 1 3 ? 7.006 65.580 40.348 1.00 60.39 ? 3 DT C C7 1
ATOM 58 C C6 . DT A 1 3 ? 4.808 66.397 39.538 1.00 44.92 ? 3 DT C C6 1
ATOM 59 P P . DA A 1 4 ? -0.915 66.809 37.915 1.00 80.92 ? 4 DA C P 1
ATOM 60 O OP1 . DA A 1 4 ? -0.398 67.650 39.030 1.00 68.35 ? 4 DA C OP1 1
ATOM 61 O OP2 . DA A 1 4 ? -2.374 66.716 37.676 1.00 83.39 ? 4 DA C OP2 1
ATOM 62 O "O5'" . DA A 1 4 ? -0.266 67.335 36.549 1.00 88.73 ? 4 DA C "O5'" 1
ATOM 63 C "C5'" . DA A 1 4 ? -0.948 68.218 35.672 1.00 82.63 ? 4 DA C "C5'" 1
ATOM 64 C "C4'" . DA A 1 4 ? -0.443 68.145 34.250 1.00 73.99 ? 4 DA C "C4'" 1
ATOM 65 O "O4'" . DA A 1 4 ? 0.685 67.253 34.125 1.00 78.87 ? 4 DA C "O4'" 1
ATOM 66 C "C3'" . DA A 1 4 ? -1.478 67.612 33.261 1.00 73.69 ? 4 DA C "C3'" 1
ATOM 67 O "O3'" . DA A 1 4 ? -1.538 68.466 32.121 1.00 79.28 ? 4 DA C "O3'" 1
ATOM 68 C "C2'" . DA A 1 4 ? -1.022 66.211 32.920 1.00 74.90 ? 4 DA C "C2'" 1
ATOM 69 C "C1'" . DA A 1 4 ? 0.476 66.292 33.079 1.00 71.17 ? 4 DA C "C1'" 1
ATOM 70 N N9 . DA A 1 4 ? 1.189 65.101 33.544 1.00 70.68 ? 4 DA C N9 1
ATOM 71 C C8 . DA A 1 4 ? 1.206 64.560 34.811 1.00 67.48 ? 4 DA C C8 1
ATOM 72 N N7 . DA A 1 4 ? 1.945 63.479 34.927 1.00 63.05 ? 4 DA C N7 1
ATOM 73 C C5 . DA A 1 4 ? 2.453 63.292 33.646 1.00 67.43 ? 4 DA C C5 1
ATOM 74 C C6 . DA A 1 4 ? 3.307 62.329 33.087 1.00 69.03 ? 4 DA C C6 1
ATOM 75 N N6 . DA A 1 4 ? 3.841 61.306 33.756 1.00 81.68 ? 4 DA C N6 1
ATOM 76 N N1 . DA A 1 4 ? 3.618 62.436 31.774 1.00 71.75 ? 4 DA C N1 1
ATOM 77 C C2 . DA A 1 4 ? 3.099 63.450 31.074 1.00 68.35 ? 4 DA C C2 1
ATOM 78 N N3 . DA A 1 4 ? 2.285 64.419 31.479 1.00 72.97 ? 4 DA C N3 1
ATOM 79 C C4 . DA A 1 4 ? 1.997 64.284 32.787 1.00 73.52 ? 4 DA C C4 1
ATOM 80 P P . DC A 1 5 ? -2.699 68.193 31.041 1.00 81.27 ? 5 DC C P 1
ATOM 81 O OP1 . DC A 1 5 ? -2.915 69.385 30.180 1.00 85.90 ? 5 DC C OP1 1
ATOM 82 O OP2 . DC A 1 5 ? -3.876 67.635 31.773 1.00 90.66 ? 5 DC C OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? -2.088 67.037 30.124 1.00 79.03 ? 5 DC C "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? -0.723 67.024 29.736 1.00 72.12 ? 5 DC C "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? -0.501 66.215 28.489 1.00 78.47 ? 5 DC C "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 0.121 64.947 28.838 1.00 86.82 ? 5 DC C "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? -1.723 65.762 27.695 1.00 82.31 ? 5 DC C "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? -1.367 65.458 26.370 1.00 84.52 ? 5 DC C "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? -2.162 64.567 28.521 1.00 74.57 ? 5 DC C "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? -0.815 63.874 28.657 1.00 76.00 ? 5 DC C "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? -0.617 62.969 29.798 1.00 66.07 ? 5 DC C N1 1
ATOM 92 C C2 . DC A 1 5 ? 0.225 61.865 29.625 1.00 59.52 ? 5 DC C C2 1
ATOM 93 O O2 . DC A 1 5 ? 0.780 61.666 28.535 1.00 60.07 ? 5 DC C O2 1
ATOM 94 N N3 . DC A 1 5 ? 0.434 61.011 30.648 1.00 64.84 ? 5 DC C N3 1
ATOM 95 C C4 . DC A 1 5 ? -0.166 61.233 31.817 1.00 65.84 ? 5 DC C C4 1
ATOM 96 N N4 . DC A 1 5 ? 0.097 60.338 32.775 1.00 87.34 ? 5 DC C N4 1
ATOM 97 C C5 . DC A 1 5 ? -1.029 62.343 32.027 1.00 61.58 ? 5 DC C C5 1
ATOM 98 C C6 . DC A 1 5 ? -1.229 63.186 31.004 1.00 64.52 ? 5 DC C C6 1
ATOM 99 P P . DG A 1 6 ? -2.170 65.771 25.027 1.00 84.81 ? 6 DG C P 1
ATOM 100 O OP1 . DG A 1 6 ? -1.306 66.479 24.037 1.00 82.70 ? 6 DG C OP1 1
ATOM 101 O OP2 . DG A 1 6 ? -3.500 66.357 25.343 1.00 79.61 ? 6 DG C OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? -2.400 64.301 24.411 1.00 87.91 ? 6 DG C "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? -1.300 63.386 24.408 1.00 89.55 ? 6 DG C "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? -1.750 61.963 24.217 1.00 89.60 ? 6 DG C "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? -1.549 61.180 25.434 1.00 76.84 ? 6 DG C "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? -3.230 61.807 23.889 1.00 90.67 ? 6 DG C "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? -3.497 60.665 23.097 1.00 103.17 ? 6 DG C "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? -3.836 61.698 25.275 1.00 84.10 ? 6 DG C "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? -2.825 60.690 25.844 1.00 74.75 ? 6 DG C "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? -2.877 60.572 27.290 1.00 63.75 ? 6 DG C N9 1
ATOM 111 C C8 . DG A 1 6 ? -3.545 61.295 28.239 1.00 61.33 ? 6 DG C C8 1
ATOM 112 N N7 . DG A 1 6 ? -3.327 60.866 29.455 1.00 64.19 ? 6 DG C N7 1
ATOM 113 C C5 . DG A 1 6 ? -2.459 59.791 29.299 1.00 62.14 ? 6 DG C C5 1
ATOM 114 C C6 . DG A 1 6 ? -1.847 58.903 30.213 1.00 59.37 ? 6 DG C C6 1
ATOM 115 O O6 . DG A 1 6 ? -1.929 58.852 31.445 1.00 64.94 ? 6 DG C O6 1
ATOM 116 N N1 . DG A 1 6 ? -1.042 57.969 29.576 1.00 65.29 ? 6 DG C N1 1
ATOM 117 C C2 . DG A 1 6 ? -0.829 57.871 28.227 1.00 71.52 ? 6 DG C C2 1
ATOM 118 N N2 . DG A 1 6 ? -0.016 56.900 27.790 1.00 79.13 ? 6 DG C N2 1
ATOM 119 N N3 . DG A 1 6 ? -1.390 58.689 27.359 1.00 76.56 ? 6 DG C N3 1
ATOM 120 C C4 . DG A 1 6 ? -2.175 59.601 27.969 1.00 66.32 ? 6 DG C C4 1
HETATM 121 FE FE . FE2 B 2 . ? 1.698 75.572 47.551 0.33 88.78 ? 101 FE2 C FE 1
HETATM 122 FE FE . FE2 C 2 . ? 8.216 82.089 41.033 0.33 95.00 ? 102 FE2 C FE 1
HETATM 123 FE FE . FE2 D 2 . ? 5.093 68.781 29.717 0.33 70.95 ? 201 FE2 C FE 1
HETATM 124 FE FE . FE2 E 2 . ? 11.692 62.182 36.316 0.33 92.03 ? 202 FE2 C FE 1
HETATM 125 N N11 . 5PM F 3 . ? 0.317 76.253 48.799 1.00 98.57 ? 111 5PM C N11 1
HETATM 126 N N12 . 5PM F 3 . ? 0.897 76.896 46.388 1.00 73.57 ? 111 5PM C N12 1
HETATM 127 N N13 . 5PM F 3 . ? 7.375 80.448 40.307 1.00 109.77 ? 111 5PM C N13 1
HETATM 128 N N14 . 5PM F 3 . ? 9.732 81.406 39.964 1.00 137.31 ? 111 5PM C N14 1
HETATM 129 C C1A . 5PM F 3 . ? 0.067 75.872 50.048 1.00 108.79 ? 111 5PM C C1A 1
HETATM 130 C C1B . 5PM F 3 . ? -0.941 76.441 50.831 1.00 116.43 ? 111 5PM C C1B 1
HETATM 131 C C1C . 5PM F 3 . ? -1.707 77.410 50.307 1.00 117.59 ? 111 5PM C C1C 1
HETATM 132 C C1D . 5PM F 3 . ? -1.467 77.813 49.008 1.00 109.44 ? 111 5PM C C1D 1
HETATM 133 C C1E . 5PM F 3 . ? -0.458 77.222 48.287 1.00 94.03 ? 111 5PM C C1E 1
HETATM 134 C C1F . 5PM F 3 . ? -0.082 77.548 46.926 1.00 78.64 ? 111 5PM C C1F 1
HETATM 135 C C1G . 5PM F 3 . ? 1.198 77.283 45.022 1.00 73.90 ? 111 5PM C C1G 1
HETATM 136 C C1H . 5PM F 3 . ? 0.939 76.417 43.983 1.00 70.68 ? 111 5PM C C1H 1
HETATM 137 C C1I . 5PM F 3 . ? 1.254 76.787 42.672 1.00 70.61 ? 111 5PM C C1I 1
HETATM 138 C C1J . 5PM F 3 . ? 1.798 78.016 42.394 1.00 68.71 ? 111 5PM C C1J 1
HETATM 139 C C1K . 5PM F 3 . ? 2.058 78.869 43.470 1.00 60.95 ? 111 5PM C C1K 1
HETATM 140 C C1L . 5PM F 3 . ? 1.774 78.507 44.778 1.00 65.48 ? 111 5PM C C1L 1
HETATM 141 S S1M . 5PM F 3 . ? 2.001 78.488 40.976 1.00 72.93 ? 111 5PM C S1M 1
HETATM 142 C C1N . 5PM F 3 . ? 3.416 78.998 40.812 1.00 75.86 ? 111 5PM C C1N 1
HETATM 143 C C1O . 5PM F 3 . ? 3.683 80.162 40.145 1.00 69.62 ? 111 5PM C C1O 1
HETATM 144 C C1P . 5PM F 3 . ? 4.957 80.650 39.959 1.00 76.62 ? 111 5PM C C1P 1
HETATM 145 C C1Q . 5PM F 3 . ? 6.006 79.983 40.505 1.00 94.89 ? 111 5PM C C1Q 1
HETATM 146 C C1R . 5PM F 3 . ? 5.765 78.833 41.166 1.00 92.25 ? 111 5PM C C1R 1
HETATM 147 C C1S . 5PM F 3 . ? 4.495 78.337 41.314 1.00 86.34 ? 111 5PM C C1S 1
HETATM 148 C C1T . 5PM F 3 . ? 8.118 79.746 39.534 1.00 123.24 ? 111 5PM C C1T 1
HETATM 149 C C1U . 5PM F 3 . ? 9.468 80.221 39.318 1.00 133.33 ? 111 5PM C C1U 1
HETATM 150 C C1V . 5PM F 3 . ? 10.421 79.557 38.548 1.00 139.31 ? 111 5PM C C1V 1
HETATM 151 C C1W . 5PM F 3 . ? 11.668 80.127 38.419 1.00 143.09 ? 111 5PM C C1W 1
HETATM 152 C C1X . 5PM F 3 . ? 11.912 81.321 39.079 1.00 143.77 ? 111 5PM C C1X 1
HETATM 153 C C1Y . 5PM F 3 . ? 10.945 81.934 39.833 1.00 140.76 ? 111 5PM C C1Y 1
HETATM 154 N N11 . 5PM G 3 . ? 4.186 67.990 28.134 1.00 58.70 ? 211 5PM C N11 1
HETATM 155 N N12 . 5PM G 3 . ? 4.400 67.150 30.548 1.00 62.28 ? 211 5PM C N12 1
HETATM 156 N N13 . 5PM G 3 . ? 10.551 63.528 37.235 1.00 70.60 ? 211 5PM C N13 1
HETATM 157 N N14 . 5PM G 3 . ? 13.015 62.879 37.597 1.00 83.41 ? 211 5PM C N14 1
HETATM 158 C C1A . 5PM G 3 . ? 4.109 68.475 26.896 1.00 63.71 ? 211 5PM C C1A 1
HETATM 159 C C1B . 5PM G 3 . ? 3.452 67.841 25.834 1.00 46.00 ? 211 5PM C C1B 1
HETATM 160 C C1C . 5PM G 3 . ? 2.847 66.672 26.092 1.00 48.64 ? 211 5PM C C1C 1
HETATM 161 C C1D . 5PM G 3 . ? 2.905 66.151 27.368 1.00 55.25 ? 211 5PM C C1D 1
HETATM 162 C C1E . 5PM G 3 . ? 3.588 66.815 28.360 1.00 56.63 ? 211 5PM C C1E 1
HETATM 163 C C1F . 5PM G 3 . ? 3.733 66.401 29.742 1.00 58.47 ? 211 5PM C C1F 1
HETATM 164 C C1G . 5PM G 3 . ? 4.542 66.679 31.918 1.00 65.44 ? 211 5PM C C1G 1
HETATM 165 C C1H . 5PM G 3 . ? 3.869 67.224 32.987 1.00 55.57 ? 211 5PM C C1H 1
HETATM 166 C C1I . 5PM G 3 . ? 4.038 66.696 34.276 1.00 52.23 ? 211 5PM C C1I 1
HETATM 167 C C1J . 5PM G 3 . ? 4.912 65.663 34.525 1.00 66.51 ? 211 5PM C C1J 1
HETATM 168 C C1K . 5PM G 3 . ? 5.586 65.111 33.423 1.00 58.39 ? 211 5PM C C1K 1
HETATM 169 C C1L . 5PM G 3 . ? 5.401 65.618 32.141 1.00 57.69 ? 211 5PM C C1L 1
HETATM 170 S S1M . 5PM G 3 . ? 5.165 65.105 35.908 1.00 68.59 ? 211 5PM C S1M 1
HETATM 171 C C1N . 5PM G 3 . ? 6.566 64.654 36.268 1.00 70.18 ? 211 5PM C C1N 1
HETATM 172 C C1O . 5PM G 3 . ? 6.839 63.424 36.815 1.00 70.93 ? 211 5PM C C1O 1
HETATM 173 C C1P . 5PM G 3 . ? 8.127 63.044 37.164 1.00 73.63 ? 211 5PM C C1P 1
HETATM 174 C C1Q . 5PM G 3 . ? 9.170 63.881 36.936 1.00 72.27 ? 211 5PM C C1Q 1
HETATM 175 C C1R . 5PM G 3 . ? 8.926 65.084 36.362 1.00 70.15 ? 211 5PM C C1R 1
HETATM 176 C C1S . 5PM G 3 . ? 7.641 65.461 36.053 1.00 70.27 ? 211 5PM C C1S 1
HETATM 177 C C1T . 5PM G 3 . ? 11.153 64.232 38.116 1.00 75.48 ? 211 5PM C C1T 1
HETATM 178 C C1U . 5PM G 3 . ? 12.536 63.907 38.378 1.00 84.73 ? 211 5PM C C1U 1
HETATM 179 C C1V . 5PM G 3 . ? 13.328 64.543 39.333 1.00 97.30 ? 211 5PM C C1V 1
HETATM 180 C C1W . 5PM G 3 . ? 14.638 64.138 39.486 1.00 100.25 ? 211 5PM C C1W 1
HETATM 181 C C1X . 5PM G 3 . ? 15.100 63.117 38.668 1.00 98.70 ? 211 5PM C C1X 1
HETATM 182 C C1Y . 5PM G 3 . ? 14.285 62.521 37.739 1.00 89.95 ? 211 5PM C C1Y 1
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