data_3FR1
#
_entry.id 3FR1
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3FR1 pdb_00003fr1 10.2210/pdb3fr1/pdb
RCSB RCSB050935 ? ?
WWPDB D_1000050935 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2009-06-30
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2017-11-01
4 'Structure model' 1 3 2024-02-21
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Refinement description'
3 3 'Structure model' 'Source and taxonomy'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' 'Database references'
6 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' pdbx_entity_src_syn
2 3 'Structure model' software
3 4 'Structure model' chem_comp_atom
4 4 'Structure model' chem_comp_bond
5 4 'Structure model' database_2
6 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_pdbx_entity_src_syn.details'
2 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id'
3 3 'Structure model' '_pdbx_entity_src_syn.organism_common_name'
4 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific'
5 4 'Structure model' '_database_2.pdbx_DOI'
6 4 'Structure model' '_database_2.pdbx_database_accession'
7 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
8 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
9 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.entry_id 3FR1
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2009-01-08
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 3FQP . unspecified
PDB 3FTH . unspecified
PDB 3FTK . unspecified
PDB 3FTL . unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Wiltzius, J.J.W.' 1
'Sawaya, M.R.' 2
'Eisenberg, D.' 3
#
_citation.id primary
_citation.title 'Molecular mechanisms for protein-encoded inheritance'
_citation.journal_abbrev Nat.Struct.Mol.Biol.
_citation.journal_volume 16
_citation.page_first 973
_citation.page_last 978
_citation.year 2009
_citation.journal_id_ASTM ?
_citation.country US
_citation.journal_id_ISSN 1545-9993
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 19684598
_citation.pdbx_database_id_DOI 10.1038/nsmb.1643
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Wiltzius, J.J.' 1 ?
primary 'Landau, M.' 2 ?
primary 'Nelson, R.' 3 ?
primary 'Sawaya, M.R.' 4 ?
primary 'Apostol, M.I.' 5 ?
primary 'Goldschmidt, L.' 6 ?
primary 'Soriaga, A.B.' 7 ?
primary 'Cascio, D.' 8 ?
primary 'Rajashankar, K.' 9 ?
primary 'Eisenberg, D.' 10 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Islet amyloid polypeptide' 716.805 1 ? ? 'sequence database residues 47-52' ?
2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ?
3 water nat water 18.015 1 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'Amylin, Diabetes-associated peptide, DAP, Insulinoma amyloid peptide'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code NFLVHS
_entity_poly.pdbx_seq_one_letter_code_can NFLVHS
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'CHLORIDE ION' CL
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ASN n
1 2 PHE n
1 3 LEU n
1 4 VAL n
1 5 HIS n
1 6 SER n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'Homo sapiens'
_pdbx_entity_src_syn.organism_common_name Human
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ASN 1 1 1 ASN ASN A . n
A 1 2 PHE 2 2 2 PHE PHE A . n
A 1 3 LEU 3 3 3 LEU LEU A . n
A 1 4 VAL 4 4 4 VAL VAL A . n
A 1 5 HIS 5 5 5 HIS HIS A . n
A 1 6 SER 6 6 6 SER SER A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL 1 7 2 CL CL A .
C 3 HOH 1 8 1 HOH HOH A .
#
loop_
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
_software.pdbx_ordinal
DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction'
http://www.hkl-xray.com/ ? ? 1
SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling'
http://www.hkl-xray.com/ ? ? 2
PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3
REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement
http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4
PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5
ADSC Quantum ? ? ? ? 'data collection' ? ? ? 6
#
_cell.length_a 11.480
_cell.length_b 9.552
_cell.length_c 38.582
_cell.angle_alpha 90.000
_cell.angle_beta 90.000
_cell.angle_gamma 90.000
_cell.entry_id 3FR1
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.entry_id 3FR1
_symmetry.Int_Tables_number 19
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
_exptl.crystals_number 1
_exptl.entry_id 3FR1
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 1.475554
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 16.641487
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH 7.5
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.pdbx_details
'0.18M MgCl2, 0.09M HEPES pH 7.5, 27% isopropanol, and 10% glycerol, vapor diffusion, hanging drop, temperature 298K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.pdbx_collection_date 2008-04-18
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9792
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 24-ID-E'
_diffrn_source.pdbx_wavelength_list 0.9792
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 24-ID-E
#
_reflns.entry_id 3FR1
_reflns.d_resolution_high 1.850
_reflns.d_resolution_low 90.000
_reflns.number_obs 434
_reflns.pdbx_Rmerge_I_obs 0.183
_reflns.pdbx_chi_squared 0.992
_reflns.pdbx_redundancy 5.400
_reflns.percent_possible_obs 93.900
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I -3
_reflns.number_all 434
_reflns.pdbx_Rsym_value ?
_reflns.B_iso_Wilson_estimate 21.2
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_ordinal
1.85 1.99 ? ? ? 0.419 ? ? 0.705 6.20 ? 68 82.90 ? 1
1.99 2.19 ? ? ? 0.258 ? ? 1.028 5.80 ? 85 97.70 ? 2
2.19 2.51 ? ? ? 0.292 ? ? 1.070 5.10 ? 86 92.50 ? 3
2.51 3.16 ? ? ? 0.171 ? ? 1.048 5.60 ? 88 97.80 ? 4
3.16 90.00 ? ? ? 0.138 ? ? 1.088 4.60 ? 107 97.30 ? 5
#
_refine.entry_id 3FR1
_refine.ls_d_res_high 1.850
_refine.ls_d_res_low 11.00
_refine.pdbx_ls_sigma_F 0.00
_refine.ls_percent_reflns_obs 94.620
_refine.ls_number_reflns_obs 422
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.ls_R_factor_obs 0.196
_refine.ls_R_factor_R_work 0.192
_refine.ls_wR_factor_R_work 0.199
_refine.ls_R_factor_R_free 0.232
_refine.ls_wR_factor_R_free 0.257
_refine.ls_percent_reflns_R_free 10.200
_refine.ls_number_reflns_R_free 43
_refine.B_iso_mean 14.911
_refine.aniso_B[1][1] -1.070
_refine.aniso_B[2][2] -1.190
_refine.aniso_B[3][3] 2.270
_refine.aniso_B[1][2] 0.000
_refine.aniso_B[1][3] 0.000
_refine.aniso_B[2][3] 0.000
_refine.correlation_coeff_Fo_to_Fc 0.963
_refine.correlation_coeff_Fo_to_Fc_free 0.938
_refine.overall_SU_R_Cruickshank_DPI 0.216
_refine.overall_SU_R_free 0.171
_refine.pdbx_overall_ESU_R 0.216
_refine.pdbx_overall_ESU_R_Free 0.171
_refine.overall_SU_ML 0.100
_refine.overall_SU_B 3.496
_refine.solvent_model_details MASK
_refine.pdbx_solvent_vdw_probe_radii 1.400
_refine.pdbx_solvent_ion_probe_radii 0.800
_refine.pdbx_solvent_shrinkage_radii 0.800
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.overall_FOM_work_R_set 0.838
_refine.B_iso_max 69.65
_refine.B_iso_min 7.88
_refine.occupancy_max 1.00
_refine.occupancy_min 1.00
_refine.pdbx_ls_sigma_I ?
_refine.ls_number_reflns_all ?
_refine.ls_R_factor_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_starting_model ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 51
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 1
_refine_hist.number_atoms_solvent 1
_refine_hist.number_atoms_total 53
_refine_hist.d_res_high 1.850
_refine_hist.d_res_low 11.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 52 0.005 0.021 ? 'X-RAY DIFFRACTION' ?
r_bond_other_d 30 0.001 0.020 ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 70 0.608 1.889 ? 'X-RAY DIFFRACTION' ?
r_angle_other_deg 73 0.546 3.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 5 1.805 5.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 3 10.516 23.333 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 7 11.831 15.000 ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 8 0.046 0.200 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 56 0.002 0.020 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_other 12 0.000 0.020 ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 30 1.476 2.000 ? 'X-RAY DIFFRACTION' ?
r_mcbond_other 11 0.369 2.000 ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 48 2.491 3.000 ? 'X-RAY DIFFRACTION' ?
r_scbond_it 22 1.299 2.000 ? 'X-RAY DIFFRACTION' ?
r_scangle_it 22 2.051 3.000 ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.d_res_high 1.85
_refine_ls_shell.d_res_low 1.899
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.percent_reflns_obs 75.680
_refine_ls_shell.number_reflns_R_work 24
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.295
_refine_ls_shell.R_factor_R_free 0.269
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 4
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all 28
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 3FR1
_struct.title 'NFLVHS segment from Islet Amyloid Polypeptide (IAPP or Amylin)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3FR1
_struct_keywords.text
'amyloid-like protofibril, Amidation, Amyloid, Cleavage on pair of basic residues, Hormone, Polymorphism, Secreted, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code IAPP_HUMAN
_struct_ref.pdbx_db_accession P10997
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code NFLVHS
_struct_ref.pdbx_align_begin 47
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3FR1
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P10997
_struct_ref_seq.db_align_beg 47
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 52
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_defined_assembly ? dimeric 2
2 author_defined_assembly ? dimeric 2
3 software_defined_assembly PISA monomeric 1
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1,2 A,B,C
2 3,4 A,B,C
3 1 A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 3_554 -x,y+1/2,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 4.7760000000 0.0000000000 0.0000000000 -1.0000000000 -19.2910000000
3 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 11.4800000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 3_654 -x+1,y+1/2,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 11.4800000000 0.0000000000
1.0000000000 0.0000000000 4.7760000000 0.0000000000 0.0000000000 -1.0000000000 -19.2910000000
#
_struct_biol.id 1
_struct_biol.details
;THE BIOLOGICAL UNIT IS A PAIR OF BETA SHEETS. ONE SHEET IS CONSTRUCTED FROM CHAIN A AND A CRYSTALLOGRAPHIC SYMMETRY OPERATOR (I.E. X,Y,Z AND -X,1/2+Y,-1/2-Z). THE SECOND SHEET IS CONSTRUCTED FROM X+1,Y,Z AND 1-X,1/2+Y,-1/2-Z.
;
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id CL
_struct_site.pdbx_auth_seq_id 7
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 4
_struct_site.details 'BINDING SITE FOR RESIDUE CL A 7'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 4 ASN A 1 ? ASN A 1 . ? 2_455 ?
2 AC1 4 ASN A 1 ? ASN A 1 . ? 3_544 ?
3 AC1 4 LEU A 3 ? LEU A 3 . ? 3_444 ?
4 AC1 4 HIS A 5 ? HIS A 5 . ? 1_555 ?
#
_pdbx_phasing_MR.entry_id 3FR1
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO'
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation ?
_pdbx_phasing_MR.d_res_low_rotation ?
_pdbx_phasing_MR.d_res_high_translation ?
_pdbx_phasing_MR.d_res_low_translation ?
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ASN N N N N 1
ASN CA C N S 2
ASN C C N N 3
ASN O O N N 4
ASN CB C N N 5
ASN CG C N N 6
ASN OD1 O N N 7
ASN ND2 N N N 8
ASN OXT O N N 9
ASN H H N N 10
ASN H2 H N N 11
ASN HA H N N 12
ASN HB2 H N N 13
ASN HB3 H N N 14
ASN HD21 H N N 15
ASN HD22 H N N 16
ASN HXT H N N 17
CL CL CL N N 18
HIS N N N N 19
HIS CA C N S 20
HIS C C N N 21
HIS O O N N 22
HIS CB C N N 23
HIS CG C Y N 24
HIS ND1 N Y N 25
HIS CD2 C Y N 26
HIS CE1 C Y N 27
HIS NE2 N Y N 28
HIS OXT O N N 29
HIS H H N N 30
HIS H2 H N N 31
HIS HA H N N 32
HIS HB2 H N N 33
HIS HB3 H N N 34
HIS HD1 H N N 35
HIS HD2 H N N 36
HIS HE1 H N N 37
HIS HE2 H N N 38
HIS HXT H N N 39
HOH O O N N 40
HOH H1 H N N 41
HOH H2 H N N 42
LEU N N N N 43
LEU CA C N S 44
LEU C C N N 45
LEU O O N N 46
LEU CB C N N 47
LEU CG C N N 48
LEU CD1 C N N 49
LEU CD2 C N N 50
LEU OXT O N N 51
LEU H H N N 52
LEU H2 H N N 53
LEU HA H N N 54
LEU HB2 H N N 55
LEU HB3 H N N 56
LEU HG H N N 57
LEU HD11 H N N 58
LEU HD12 H N N 59
LEU HD13 H N N 60
LEU HD21 H N N 61
LEU HD22 H N N 62
LEU HD23 H N N 63
LEU HXT H N N 64
PHE N N N N 65
PHE CA C N S 66
PHE C C N N 67
PHE O O N N 68
PHE CB C N N 69
PHE CG C Y N 70
PHE CD1 C Y N 71
PHE CD2 C Y N 72
PHE CE1 C Y N 73
PHE CE2 C Y N 74
PHE CZ C Y N 75
PHE OXT O N N 76
PHE H H N N 77
PHE H2 H N N 78
PHE HA H N N 79
PHE HB2 H N N 80
PHE HB3 H N N 81
PHE HD1 H N N 82
PHE HD2 H N N 83
PHE HE1 H N N 84
PHE HE2 H N N 85
PHE HZ H N N 86
PHE HXT H N N 87
SER N N N N 88
SER CA C N S 89
SER C C N N 90
SER O O N N 91
SER CB C N N 92
SER OG O N N 93
SER OXT O N N 94
SER H H N N 95
SER H2 H N N 96
SER HA H N N 97
SER HB2 H N N 98
SER HB3 H N N 99
SER HG H N N 100
SER HXT H N N 101
VAL N N N N 102
VAL CA C N S 103
VAL C C N N 104
VAL O O N N 105
VAL CB C N N 106
VAL CG1 C N N 107
VAL CG2 C N N 108
VAL OXT O N N 109
VAL H H N N 110
VAL H2 H N N 111
VAL HA H N N 112
VAL HB H N N 113
VAL HG11 H N N 114
VAL HG12 H N N 115
VAL HG13 H N N 116
VAL HG21 H N N 117
VAL HG22 H N N 118
VAL HG23 H N N 119
VAL HXT H N N 120
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ASN N CA sing N N 1
ASN N H sing N N 2
ASN N H2 sing N N 3
ASN CA C sing N N 4
ASN CA CB sing N N 5
ASN CA HA sing N N 6
ASN C O doub N N 7
ASN C OXT sing N N 8
ASN CB CG sing N N 9
ASN CB HB2 sing N N 10
ASN CB HB3 sing N N 11
ASN CG OD1 doub N N 12
ASN CG ND2 sing N N 13
ASN ND2 HD21 sing N N 14
ASN ND2 HD22 sing N N 15
ASN OXT HXT sing N N 16
HIS N CA sing N N 17
HIS N H sing N N 18
HIS N H2 sing N N 19
HIS CA C sing N N 20
HIS CA CB sing N N 21
HIS CA HA sing N N 22
HIS C O doub N N 23
HIS C OXT sing N N 24
HIS CB CG sing N N 25
HIS CB HB2 sing N N 26
HIS CB HB3 sing N N 27
HIS CG ND1 sing Y N 28
HIS CG CD2 doub Y N 29
HIS ND1 CE1 doub Y N 30
HIS ND1 HD1 sing N N 31
HIS CD2 NE2 sing Y N 32
HIS CD2 HD2 sing N N 33
HIS CE1 NE2 sing Y N 34
HIS CE1 HE1 sing N N 35
HIS NE2 HE2 sing N N 36
HIS OXT HXT sing N N 37
HOH O H1 sing N N 38
HOH O H2 sing N N 39
LEU N CA sing N N 40
LEU N H sing N N 41
LEU N H2 sing N N 42
LEU CA C sing N N 43
LEU CA CB sing N N 44
LEU CA HA sing N N 45
LEU C O doub N N 46
LEU C OXT sing N N 47
LEU CB CG sing N N 48
LEU CB HB2 sing N N 49
LEU CB HB3 sing N N 50
LEU CG CD1 sing N N 51
LEU CG CD2 sing N N 52
LEU CG HG sing N N 53
LEU CD1 HD11 sing N N 54
LEU CD1 HD12 sing N N 55
LEU CD1 HD13 sing N N 56
LEU CD2 HD21 sing N N 57
LEU CD2 HD22 sing N N 58
LEU CD2 HD23 sing N N 59
LEU OXT HXT sing N N 60
PHE N CA sing N N 61
PHE N H sing N N 62
PHE N H2 sing N N 63
PHE CA C sing N N 64
PHE CA CB sing N N 65
PHE CA HA sing N N 66
PHE C O doub N N 67
PHE C OXT sing N N 68
PHE CB CG sing N N 69
PHE CB HB2 sing N N 70
PHE CB HB3 sing N N 71
PHE CG CD1 doub Y N 72
PHE CG CD2 sing Y N 73
PHE CD1 CE1 sing Y N 74
PHE CD1 HD1 sing N N 75
PHE CD2 CE2 doub Y N 76
PHE CD2 HD2 sing N N 77
PHE CE1 CZ doub Y N 78
PHE CE1 HE1 sing N N 79
PHE CE2 CZ sing Y N 80
PHE CE2 HE2 sing N N 81
PHE CZ HZ sing N N 82
PHE OXT HXT sing N N 83
SER N CA sing N N 84
SER N H sing N N 85
SER N H2 sing N N 86
SER CA C sing N N 87
SER CA CB sing N N 88
SER CA HA sing N N 89
SER C O doub N N 90
SER C OXT sing N N 91
SER CB OG sing N N 92
SER CB HB2 sing N N 93
SER CB HB3 sing N N 94
SER OG HG sing N N 95
SER OXT HXT sing N N 96
VAL N CA sing N N 97
VAL N H sing N N 98
VAL N H2 sing N N 99
VAL CA C sing N N 100
VAL CA CB sing N N 101
VAL CA HA sing N N 102
VAL C O doub N N 103
VAL C OXT sing N N 104
VAL CB CG1 sing N N 105
VAL CB CG2 sing N N 106
VAL CB HB sing N N 107
VAL CG1 HG11 sing N N 108
VAL CG1 HG12 sing N N 109
VAL CG1 HG13 sing N N 110
VAL CG2 HG21 sing N N 111
VAL CG2 HG22 sing N N 112
VAL CG2 HG23 sing N N 113
VAL OXT HXT sing N N 114
#
_atom_sites.entry_id 3FR1
_atom_sites.fract_transf_matrix[1][1] 0.087108
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.104690
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.025919
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
CL
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . ASN A 1 1 ? 4.395 0.285 -18.116 1.00 16.97 ? 1 ASN A N 1
ATOM 2 C CA . ASN A 1 1 ? 3.409 1.003 -17.262 1.00 16.46 ? 1 ASN A CA 1
ATOM 3 C C . ASN A 1 1 ? 3.375 0.392 -15.871 1.00 13.59 ? 1 ASN A C 1
ATOM 4 O O . ASN A 1 1 ? 3.631 -0.797 -15.710 1.00 12.87 ? 1 ASN A O 1
ATOM 5 C CB . ASN A 1 1 ? 2.016 0.954 -17.896 1.00 18.36 ? 1 ASN A CB 1
ATOM 6 C CG . ASN A 1 1 ? 1.923 1.773 -19.174 1.00 20.48 ? 1 ASN A CG 1
ATOM 7 O OD1 . ASN A 1 1 ? 2.898 2.389 -19.603 1.00 23.06 ? 1 ASN A OD1 1
ATOM 8 N ND2 . ASN A 1 1 ? 0.743 1.788 -19.784 1.00 22.40 ? 1 ASN A ND2 1
ATOM 9 N N . PHE A 1 2 ? 3.069 1.214 -14.874 1.00 10.89 ? 2 PHE A N 1
ATOM 10 C CA . PHE A 1 2 ? 3.027 0.766 -13.487 1.00 9.73 ? 2 PHE A CA 1
ATOM 11 C C . PHE A 1 2 ? 1.851 1.392 -12.759 1.00 9.19 ? 2 PHE A C 1
ATOM 12 O O . PHE A 1 2 ? 1.627 2.594 -12.864 1.00 7.88 ? 2 PHE A O 1
ATOM 13 C CB . PHE A 1 2 ? 4.313 1.154 -12.768 1.00 9.29 ? 2 PHE A CB 1
ATOM 14 C CG . PHE A 1 2 ? 4.377 0.671 -11.344 1.00 9.10 ? 2 PHE A CG 1
ATOM 15 C CD1 . PHE A 1 2 ? 4.607 -0.670 -11.069 1.00 9.60 ? 2 PHE A CD1 1
ATOM 16 C CD2 . PHE A 1 2 ? 4.197 1.548 -10.284 1.00 10.15 ? 2 PHE A CD2 1
ATOM 17 C CE1 . PHE A 1 2 ? 4.664 -1.130 -9.763 1.00 9.75 ? 2 PHE A CE1 1
ATOM 18 C CE2 . PHE A 1 2 ? 4.260 1.094 -8.968 1.00 10.32 ? 2 PHE A CE2 1
ATOM 19 C CZ . PHE A 1 2 ? 4.493 -0.252 -8.713 1.00 10.02 ? 2 PHE A CZ 1
ATOM 20 N N . LEU A 1 3 ? 1.115 0.573 -12.012 1.00 10.14 ? 3 LEU A N 1
ATOM 21 C CA . LEU A 1 3 ? -0.024 1.051 -11.235 1.00 8.89 ? 3 LEU A CA 1
ATOM 22 C C . LEU A 1 3 ? -0.033 0.353 -9.884 1.00 9.04 ? 3 LEU A C 1
ATOM 23 O O . LEU A 1 3 ? 0.174 -0.860 -9.812 1.00 8.57 ? 3 LEU A O 1
ATOM 24 C CB . LEU A 1 3 ? -1.323 0.786 -11.994 1.00 10.25 ? 3 LEU A CB 1
ATOM 25 C CG . LEU A 1 3 ? -2.591 1.429 -11.427 1.00 11.46 ? 3 LEU A CG 1
ATOM 26 C CD1 . LEU A 1 3 ? -3.609 1.678 -12.532 1.00 10.19 ? 3 LEU A CD1 1
ATOM 27 C CD2 . LEU A 1 3 ? -3.179 0.552 -10.325 1.00 12.78 ? 3 LEU A CD2 1
ATOM 28 N N . VAL A 1 4 ? -0.249 1.118 -8.817 1.00 8.65 ? 4 VAL A N 1
ATOM 29 C CA . VAL A 1 4 ? -0.345 0.542 -7.473 1.00 10.70 ? 4 VAL A CA 1
ATOM 30 C C . VAL A 1 4 ? -1.441 1.232 -6.664 1.00 10.48 ? 4 VAL A C 1
ATOM 31 O O . VAL A 1 4 ? -1.624 2.448 -6.746 1.00 8.63 ? 4 VAL A O 1
ATOM 32 C CB . VAL A 1 4 ? 1.015 0.582 -6.715 1.00 11.00 ? 4 VAL A CB 1
ATOM 33 C CG1 . VAL A 1 4 ? 1.485 2.013 -6.517 1.00 11.89 ? 4 VAL A CG1 1
ATOM 34 C CG2 . VAL A 1 4 ? 0.909 -0.144 -5.368 1.00 11.48 ? 4 VAL A CG2 1
ATOM 35 N N . HIS A 1 5 ? -2.188 0.436 -5.905 1.00 10.87 ? 5 HIS A N 1
ATOM 36 C CA . HIS A 1 5 ? -3.273 0.952 -5.076 1.00 13.25 ? 5 HIS A CA 1
ATOM 37 C C . HIS A 1 5 ? -3.219 0.297 -3.706 1.00 13.41 ? 5 HIS A C 1
ATOM 38 O O . HIS A 1 5 ? -3.002 -0.905 -3.603 1.00 12.78 ? 5 HIS A O 1
ATOM 39 C CB . HIS A 1 5 ? -4.625 0.663 -5.726 1.00 13.94 ? 5 HIS A CB 1
ATOM 40 C CG . HIS A 1 5 ? -5.791 0.984 -4.848 1.00 15.32 ? 5 HIS A CG 1
ATOM 41 N ND1 . HIS A 1 5 ? -6.461 0.023 -4.123 1.00 17.33 ? 5 HIS A ND1 1
ATOM 42 C CD2 . HIS A 1 5 ? -6.389 2.164 -4.556 1.00 14.59 ? 5 HIS A CD2 1
ATOM 43 C CE1 . HIS A 1 5 ? -7.430 0.596 -3.430 1.00 17.49 ? 5 HIS A CE1 1
ATOM 44 N NE2 . HIS A 1 5 ? -7.409 1.894 -3.677 1.00 15.23 ? 5 HIS A NE2 1
ATOM 45 N N . SER A 1 6 ? -3.423 1.087 -2.659 1.00 16.30 ? 6 SER A N 1
ATOM 46 C CA . SER A 1 6 ? -3.432 0.562 -1.297 1.00 19.24 ? 6 SER A CA 1
ATOM 47 C C . SER A 1 6 ? -4.521 1.233 -0.472 1.00 19.74 ? 6 SER A C 1
ATOM 48 O O . SER A 1 6 ? -5.037 2.295 -0.829 1.00 19.56 ? 6 SER A O 1
ATOM 49 C CB . SER A 1 6 ? -2.068 0.760 -0.631 1.00 20.71 ? 6 SER A CB 1
ATOM 50 O OG . SER A 1 6 ? -1.832 2.127 -0.329 1.00 22.39 ? 6 SER A OG 1
ATOM 51 O OXT . SER A 1 6 ? -4.899 0.714 0.576 1.00 21.53 ? 6 SER A OXT 1
HETATM 52 CL CL . CL B 2 . ? -6.550 -2.921 -3.339 1.00 32.71 ? 7 CL A CL 1
HETATM 53 O O . HOH C 3 . ? 4.530 0.402 -20.841 1.00 69.65 ? 8 HOH A O 1
#