data_3FA1
#
_entry.id 3FA1
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.378
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3FA1 pdb_00003fa1 10.2210/pdb3fa1/pdb
NDB AD0073 ? ?
RCSB RCSB050334 ? ?
WWPDB D_1000050334 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1DNS . unspecified
PDB 2GPX . unspecified
#
_pdbx_database_status.entry_id 3FA1
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2008-11-14
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Sheng, J.' 1
'Tatsuya, M.' 2
'Hassan, A.E.' 3
'Huang, Z.' 4
#
_citation.id primary
_citation.title 'Crystal Structure of Tellurium Derivatized DNA'
_citation.journal_abbrev 'To be Published'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year ?
_citation.journal_id_ASTM ?
_citation.country ?
_citation.journal_id_ISSN ?
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Sheng, J.' 1 ?
primary 'Tatsuya, M.' 2 ?
primary 'Hassan, A.E.' 3 ?
primary 'Huang, Z.' 4 ?
#
_cell.length_a 42.695
_cell.length_b 42.695
_cell.length_c 24.213
_cell.angle_alpha 90.000
_cell.angle_beta 90.000
_cell.angle_gamma 90.000
_cell.entry_id 3FA1
_cell.pdbx_unique_axis ?
_cell.Z_PDB 8
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.entry_id 3FA1
_symmetry.Int_Tables_number 96
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*DGP*(UMS)P*DGP*(TTI)P*DAP*DCP*DAP*DC)-3'" 2619.151 1 ? 'Tellurium modified deoxy-Uridine' ?
'Tellurium contained DNA'
2 water nat water 18.015 28 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(UMS)(DG)(TTI)(DA)(DC)(DA)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GUGUACAC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 UMS n
1 3 DG n
1 4 TTI n
1 5 DA n
1 6 DC n
1 7 DA n
1 8 DC n
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 3FA1
_struct_ref.pdbx_db_accession 3FA1
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3FA1
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 3FA1
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ?
'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
TTI 'DNA linking' n
;2'-deoxy-5-telluroxouridine 5'-(dihydrogen phosphate)
;
"5-Tellurium-deoxyuridine-5'-phosphate" 'C9 H13 N2 O8 P Te' 435.782
UMS 'DNA linking' n "2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE" ?
'C10 H15 N2 O8 P Se' 401.168
#
_exptl.crystals_number 1
_exptl.entry_id 3FA1
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 2.11
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 41.61
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH 6.0
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.pdbx_details
'MPD,sodium cacodylate,spermine tetra-HCl, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.details
1 1 1 MPD ? ? ?
1 2 1 'Sodium cacodylate' ? ? ?
1 3 ? 'Spermine tetra-HCl' ? ? ?
1 4 2 MPD ? ? ?
1 5 2 'Sodium cacodylate' ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC Q210'
_diffrn_detector.pdbx_collection_date 2008-04-12
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol SAD
_diffrn_radiation.monochromator 'Si(111)'
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9795
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'NSLS BEAMLINE X12C'
_diffrn_source.pdbx_wavelength_list 0.9795
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site NSLS
_diffrn_source.pdbx_synchrotron_beamline X12C
#
_reflns.entry_id 3FA1
_reflns.d_resolution_high 1.500
_reflns.d_resolution_low 18.890
_reflns.number_obs 3659
_reflns.pdbx_scaling_rejects 239
_reflns.pdbx_Rmerge_I_obs 0.075
_reflns.pdbx_chi_squared 0.930
_reflns.pdbx_redundancy 8.630
_reflns.percent_possible_obs 94.400
_reflns.observed_criterion_sigma_F 50
_reflns.observed_criterion_sigma_I 5
_reflns.number_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 14.9
_reflns.B_iso_Wilson_estimate 19.6
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
1.50 1.55 ? 1469 ? 0.427 2.4 ? 0.420 5.30 ? 277 74.90 1 1
1.55 1.62 ? 2128 ? 0.311 3.5 ? 0.490 6.50 ? 327 85.20 2 1
1.62 1.69 ? 3022 ? 0.224 5.1 ? 0.540 8.40 ? 359 96.20 3 1
1.69 1.78 ? 3563 ? 0.176 6.6 ? 0.580 9.47 ? 376 99.20 4 1
1.78 1.89 ? 3644 ? 0.195 7.6 ? 0.700 9.49 ? 383 99.70 5 1
1.89 2.04 ? 3546 ? 0.137 9.8 ? 0.680 9.36 ? 378 98.70 6 1
2.04 2.24 ? 3583 ? 0.144 11.0 ? 0.830 9.43 ? 378 98.70 7 1
2.24 2.56 ? 3665 ? 0.111 13.2 ? 0.870 9.50 ? 384 99.20 8 1
2.56 3.23 ? 3642 ? 0.073 24.0 ? 1.250 9.28 ? 389 97.50 9 1
3.23 18.89 ? 3558 ? 0.052 54.2 ? 2.430 8.37 ? 408 93.60 10 1
#
_refine.entry_id 3FA1
_refine.ls_d_res_high 1.500
_refine.ls_d_res_low 18.89
_refine.pdbx_ls_sigma_F 0.00
_refine.ls_percent_reflns_obs 93.800
_refine.ls_number_reflns_obs 783
_refine.ls_R_factor_R_work 0.193
_refine.ls_R_factor_R_free 0.215
_refine.ls_percent_reflns_R_free 10.100
_refine.ls_number_reflns_R_free 691
_refine.B_iso_mean 22.409
_refine.solvent_model_param_bsol 54.275
_refine.aniso_B[1][1] -0.602
_refine.aniso_B[2][2] -0.602
_refine.aniso_B[3][3] 1.204
_refine.aniso_B[1][2] 0.000
_refine.aniso_B[1][3] 0.000
_refine.aniso_B[2][3] 0.000
_refine.pdbx_method_to_determine_struct ?
_refine.B_iso_max 47.55
_refine.B_iso_min 14.32
_refine.occupancy_max 1.00
_refine.occupancy_min 0.35
_refine.pdbx_ls_sigma_I ?
_refine.ls_number_reflns_all ?
_refine.ls_R_factor_all 0.1947
_refine.ls_R_factor_obs 0.1947
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_starting_model 1DNS
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details Random
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_stereochemistry_target_values 'Engh & Huber'
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_isotropic_thermal_model restrained
_refine.details 'THE BIJVOET PAIRS WERE USED IN PHASING'
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_overall_ESU_R ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 162
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 28
_refine_hist.number_atoms_total 190
_refine_hist.d_res_high 1.500
_refine_hist.d_res_low 18.89
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
c_bond_d ? 0.003 ? ? 'X-RAY DIFFRACTION' ?
c_angle_d ? 0.694 ? ? 'X-RAY DIFFRACTION' ?
c_mcbond_it ? 0.000 1.500 ? 'X-RAY DIFFRACTION' ?
c_scbond_it ? 1.545 2.000 ? 'X-RAY DIFFRACTION' ?
c_mcangle_it ? 0.000 2.000 ? 'X-RAY DIFFRACTION' ?
c_scangle_it ? 2.115 2.500 ? 'X-RAY DIFFRACTION' ?
#
loop_
_pdbx_xplor_file.serial_no
_pdbx_xplor_file.param_file
_pdbx_xplor_file.topol_file
_pdbx_xplor_file.pdbx_refine_id
1 CNS_TOPPAR:protein_rep.param CNS_TOPPAR:protein.top 'X-RAY DIFFRACTION'
2 dna-rna_rep_jia.param dna-rna_jia.top 'X-RAY DIFFRACTION'
3 CNS_TOPPAR:water_rep.param CNS_TOPPAR:water.top 'X-RAY DIFFRACTION'
4 CNS_TOPPAR:ion.param CNS_TOPPAR:ion.top 'X-RAY DIFFRACTION'
#
_struct.entry_id 3FA1
_struct.title 'Crystal Structure of Tellurium Derivatized DNA'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3FA1
_struct_keywords.text 'Tellurium DNA, DNA'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A UMS 2 P ? ? A DG 1 A UMS 2 1_555 ? ? ? ? ? ? ? 1.606 ? ?
covale2 covale both ? A UMS 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A UMS 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.609 ? ?
covale3 covale both ? A DG 3 "O3'" ? ? ? 1_555 A TTI 4 P ? ? A DG 3 A TTI 4 1_555 ? ? ? ? ? ? ? 1.612 ? ?
covale4 covale both ? A TTI 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A TTI 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.606 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A UMS 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A UMS 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A TTI 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A TTI 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A TTI 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A TTI 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A TTI 4 N3 ? ? A DA 5 A TTI 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A TTI 4 O4 ? ? A DA 5 A TTI 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A UMS 2 N3 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A UMS 2 O4 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_atom_sites.entry_id 3FA1
_atom_sites.fract_transf_matrix[1][1] 0.023422
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023422
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.041300
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
SE
TE
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 29.041 19.093 -5.408 1.00 20.85 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 28.888 17.699 -5.122 1.00 21.17 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 30.100 17.126 -4.425 1.00 19.50 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 31.269 17.302 -5.256 1.00 18.32 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 30.457 17.810 -3.113 1.00 19.33 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 29.704 17.256 -2.032 1.00 20.01 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 31.936 17.500 -2.993 1.00 17.51 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 32.398 17.617 -4.442 1.00 17.80 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 32.829 18.968 -4.792 1.00 17.32 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 32.106 19.919 -5.471 1.00 18.72 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 32.755 21.043 -5.621 1.00 18.24 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 33.980 20.817 -5.009 1.00 17.16 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 35.105 21.671 -4.858 1.00 17.88 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 35.247 22.837 -5.253 1.00 20.03 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 36.137 21.038 -4.169 1.00 18.83 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 36.095 19.750 -3.693 1.00 21.55 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 37.187 19.316 -3.057 1.00 22.39 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 35.057 18.945 -3.831 1.00 19.03 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 34.043 19.539 -4.493 1.00 17.81 ? 1 DG A C4 1
HETATM 20 P P . UMS A 1 2 ? 29.251 18.201 -0.815 1.00 20.62 ? 2 UMS A P 1
HETATM 21 O OP1 . UMS A 1 2 ? 28.398 17.402 0.101 1.00 19.55 ? 2 UMS A OP1 1
HETATM 22 O OP2 . UMS A 1 2 ? 28.730 19.464 -1.394 1.00 20.33 ? 2 UMS A OP2 1
HETATM 23 O "O5'" . UMS A 1 2 ? 30.612 18.539 -0.062 1.00 18.68 ? 2 UMS A "O5'" 1
HETATM 24 C "C5'" . UMS A 1 2 ? 31.307 17.528 0.662 1.00 20.42 ? 2 UMS A "C5'" 1
HETATM 25 C "C4'" . UMS A 1 2 ? 32.632 18.050 1.164 1.00 21.15 ? 2 UMS A "C4'" 1
HETATM 26 O "O4'" . UMS A 1 2 ? 33.484 18.384 0.032 1.00 19.67 ? 2 UMS A "O4'" 1
HETATM 27 C "C3'" . UMS A 1 2 ? 32.591 19.334 1.976 1.00 22.80 ? 2 UMS A "C3'" 1
HETATM 28 O "O3'" . UMS A 1 2 ? 32.236 19.097 3.332 1.00 24.03 ? 2 UMS A "O3'" 1
HETATM 29 C "C2'" . UMS A 1 2 ? 34.028 19.818 1.828 1.00 22.07 ? 2 UMS A "C2'" 1
HETATM 30 SE "SE2'" . UMS A 1 2 ? 35.290 18.590 2.986 1.00 28.55 ? 2 UMS A "SE2'" 1
HETATM 31 C "C1'" . UMS A 1 2 ? 34.340 19.466 0.379 1.00 21.57 ? 2 UMS A "C1'" 1
HETATM 32 C "CA'" . UMS A 1 2 ? 36.874 19.547 2.746 1.00 25.43 ? 2 UMS A "CA'" 1
HETATM 33 N N1 . UMS A 1 2 ? 34.040 20.599 -0.508 1.00 19.54 ? 2 UMS A N1 1
HETATM 34 C C2 . UMS A 1 2 ? 35.003 21.579 -0.638 1.00 20.14 ? 2 UMS A C2 1
HETATM 35 O O2 . UMS A 1 2 ? 36.078 21.524 -0.069 1.00 20.95 ? 2 UMS A O2 1
HETATM 36 N N3 . UMS A 1 2 ? 34.659 22.629 -1.454 1.00 20.75 ? 2 UMS A N3 1
HETATM 37 C C4 . UMS A 1 2 ? 33.474 22.792 -2.142 1.00 19.01 ? 2 UMS A C4 1
HETATM 38 O O4 . UMS A 1 2 ? 33.302 23.810 -2.818 1.00 19.61 ? 2 UMS A O4 1
HETATM 39 C C5 . UMS A 1 2 ? 32.531 21.727 -1.966 1.00 19.67 ? 2 UMS A C5 1
HETATM 40 C C6 . UMS A 1 2 ? 32.841 20.691 -1.175 1.00 20.41 ? 2 UMS A C6 1
ATOM 41 P P . DG A 1 3 ? 31.412 20.216 4.143 1.00 27.54 ? 3 DG A P 1
ATOM 42 O OP1 . DG A 1 3 ? 31.063 19.617 5.452 1.00 26.52 ? 3 DG A OP1 1
ATOM 43 O OP2 . DG A 1 3 ? 30.334 20.735 3.263 1.00 27.44 ? 3 DG A OP2 1
ATOM 44 O "O5'" . DG A 1 3 ? 32.464 21.392 4.382 1.00 26.19 ? 3 DG A "O5'" 1
ATOM 45 C "C5'" . DG A 1 3 ? 33.608 21.190 5.207 1.00 26.62 ? 3 DG A "C5'" 1
ATOM 46 C "C4'" . DG A 1 3 ? 34.624 22.290 4.995 1.00 23.84 ? 3 DG A "C4'" 1
ATOM 47 O "O4'" . DG A 1 3 ? 35.009 22.355 3.603 1.00 23.38 ? 3 DG A "O4'" 1
ATOM 48 C "C3'" . DG A 1 3 ? 34.187 23.714 5.313 1.00 23.04 ? 3 DG A "C3'" 1
ATOM 49 O "O3'" . DG A 1 3 ? 34.261 23.986 6.717 1.00 24.60 ? 3 DG A "O3'" 1
ATOM 50 C "C2'" . DG A 1 3 ? 35.234 24.515 4.566 1.00 21.54 ? 3 DG A "C2'" 1
ATOM 51 C "C1'" . DG A 1 3 ? 35.442 23.684 3.303 1.00 22.07 ? 3 DG A "C1'" 1
ATOM 52 N N9 . DG A 1 3 ? 34.658 24.186 2.180 1.00 20.15 ? 3 DG A N9 1
ATOM 53 C C8 . DG A 1 3 ? 33.462 23.708 1.700 1.00 19.85 ? 3 DG A C8 1
ATOM 54 N N7 . DG A 1 3 ? 33.001 24.403 0.695 1.00 18.49 ? 3 DG A N7 1
ATOM 55 C C5 . DG A 1 3 ? 33.954 25.395 0.499 1.00 18.36 ? 3 DG A C5 1
ATOM 56 C C6 . DG A 1 3 ? 34.002 26.458 -0.443 1.00 16.61 ? 3 DG A C6 1
ATOM 57 O O6 . DG A 1 3 ? 33.187 26.742 -1.329 1.00 17.42 ? 3 DG A O6 1
ATOM 58 N N1 . DG A 1 3 ? 35.148 27.233 -0.282 1.00 17.45 ? 3 DG A N1 1
ATOM 59 C C2 . DG A 1 3 ? 36.125 27.013 0.656 1.00 17.46 ? 3 DG A C2 1
ATOM 60 N N2 . DG A 1 3 ? 37.159 27.863 0.647 1.00 18.07 ? 3 DG A N2 1
ATOM 61 N N3 . DG A 1 3 ? 36.091 26.030 1.537 1.00 19.37 ? 3 DG A N3 1
ATOM 62 C C4 . DG A 1 3 ? 34.985 25.268 1.403 1.00 18.57 ? 3 DG A C4 1
HETATM 63 N N1 . TTI A 1 4 ? 35.179 28.961 3.592 1.00 17.30 ? 4 TTI A N1 1
HETATM 64 C C2 . TTI A 1 4 ? 35.071 29.894 2.585 1.00 16.63 ? 4 TTI A C2 1
HETATM 65 O O2 . TTI A 1 4 ? 35.907 30.762 2.381 1.00 17.03 ? 4 TTI A O2 1
HETATM 66 N N3 . TTI A 1 4 ? 33.935 29.781 1.824 1.00 16.72 ? 4 TTI A N3 1
HETATM 67 C C4 . TTI A 1 4 ? 32.920 28.855 1.966 1.00 18.05 ? 4 TTI A C4 1
HETATM 68 O O4 . TTI A 1 4 ? 31.953 28.885 1.203 1.00 18.28 ? 4 TTI A O4 1
HETATM 69 C C5 . TTI A 1 4 ? 33.096 27.910 3.045 1.00 17.33 ? 4 TTI A C5 1
HETATM 70 C C6 . TTI A 1 4 ? 34.203 28.007 3.794 1.00 18.00 ? 4 TTI A C6 1
HETATM 71 C "C1'" . TTI A 1 4 ? 36.376 29.000 4.448 1.00 18.79 ? 4 TTI A "C1'" 1
HETATM 72 C "C2'" . TTI A 1 4 ? 36.287 29.993 5.608 1.00 20.02 ? 4 TTI A "C2'" 1
HETATM 73 C "C3'" . TTI A 1 4 ? 35.861 29.117 6.770 1.00 21.59 ? 4 TTI A "C3'" 1
HETATM 74 O "O3'" . TTI A 1 4 ? 36.317 29.643 8.019 1.00 22.18 ? 4 TTI A "O3'" 1
HETATM 75 C "C4'" . TTI A 1 4 ? 36.570 27.807 6.461 1.00 21.01 ? 4 TTI A "C4'" 1
HETATM 76 O "O4'" . TTI A 1 4 ? 36.538 27.705 5.021 1.00 20.77 ? 4 TTI A "O4'" 1
HETATM 77 C "C5'" . TTI A 1 4 ? 35.939 26.581 7.081 1.00 23.07 ? 4 TTI A "C5'" 1
HETATM 78 O "O5'" . TTI A 1 4 ? 34.555 26.504 6.731 1.00 23.93 ? 4 TTI A "O5'" 1
HETATM 79 P P . TTI A 1 4 ? 33.622 25.344 7.306 1.00 24.22 ? 4 TTI A P 1
HETATM 80 O O1P . TTI A 1 4 ? 32.272 25.512 6.712 1.00 24.51 ? 4 TTI A O1P 1
HETATM 81 O O2P . TTI A 1 4 ? 33.768 25.305 8.783 1.00 27.09 ? 4 TTI A O2P 1
HETATM 82 TE TE5 . TTI A 1 4 ? 31.594 26.423 3.371 0.35 25.64 ? 4 TTI A TE5 1
ATOM 83 P P . DA A 1 5 ? 35.547 30.886 8.684 1.00 23.30 ? 5 DA A P 1
ATOM 84 O OP1 . DA A 1 5 ? 36.125 31.088 10.033 1.00 25.99 ? 5 DA A OP1 1
ATOM 85 O OP2 . DA A 1 5 ? 34.081 30.691 8.533 1.00 25.59 ? 5 DA A OP2 1
ATOM 86 O "O5'" . DA A 1 5 ? 35.977 32.126 7.783 1.00 21.02 ? 5 DA A "O5'" 1
ATOM 87 C "C5'" . DA A 1 5 ? 35.148 33.284 7.687 1.00 20.23 ? 5 DA A "C5'" 1
ATOM 88 C "C4'" . DA A 1 5 ? 35.544 34.113 6.486 1.00 19.00 ? 5 DA A "C4'" 1
ATOM 89 O "O4'" . DA A 1 5 ? 35.563 33.289 5.300 1.00 18.75 ? 5 DA A "O4'" 1
ATOM 90 C "C3'" . DA A 1 5 ? 34.581 35.247 6.158 1.00 20.24 ? 5 DA A "C3'" 1
ATOM 91 O "O3'" . DA A 1 5 ? 34.915 36.414 6.913 1.00 20.72 ? 5 DA A "O3'" 1
ATOM 92 C "C2'" . DA A 1 5 ? 34.820 35.452 4.675 1.00 18.83 ? 5 DA A "C2'" 1
ATOM 93 C "C1'" . DA A 1 5 ? 35.067 34.027 4.185 1.00 17.94 ? 5 DA A "C1'" 1
ATOM 94 N N9 . DA A 1 5 ? 33.867 33.342 3.701 1.00 15.31 ? 5 DA A N9 1
ATOM 95 C C8 . DA A 1 5 ? 33.216 32.286 4.287 1.00 17.49 ? 5 DA A C8 1
ATOM 96 N N7 . DA A 1 5 ? 32.168 31.873 3.618 1.00 15.34 ? 5 DA A N7 1
ATOM 97 C C5 . DA A 1 5 ? 32.125 32.713 2.515 1.00 15.61 ? 5 DA A C5 1
ATOM 98 C C6 . DA A 1 5 ? 31.247 32.791 1.423 1.00 14.46 ? 5 DA A C6 1
ATOM 99 N N6 . DA A 1 5 ? 30.206 31.972 1.251 1.00 15.91 ? 5 DA A N6 1
ATOM 100 N N1 . DA A 1 5 ? 31.479 33.751 0.500 1.00 14.38 ? 5 DA A N1 1
ATOM 101 C C2 . DA A 1 5 ? 32.529 34.566 0.674 1.00 14.32 ? 5 DA A C2 1
ATOM 102 N N3 . DA A 1 5 ? 33.425 34.588 1.657 1.00 16.13 ? 5 DA A N3 1
ATOM 103 C C4 . DA A 1 5 ? 33.165 33.626 2.556 1.00 15.77 ? 5 DA A C4 1
ATOM 104 P P . DC A 1 6 ? 33.748 37.393 7.424 1.00 21.56 ? 6 DC A P 1
ATOM 105 O OP1 . DC A 1 6 ? 34.372 38.450 8.259 1.00 23.79 ? 6 DC A OP1 1
ATOM 106 O OP2 . DC A 1 6 ? 32.656 36.557 7.986 1.00 21.22 ? 6 DC A OP2 1
ATOM 107 O "O5'" . DC A 1 6 ? 33.204 38.067 6.089 1.00 18.98 ? 6 DC A "O5'" 1
ATOM 108 C "C5'" . DC A 1 6 ? 34.042 38.918 5.312 1.00 20.29 ? 6 DC A "C5'" 1
ATOM 109 C "C4'" . DC A 1 6 ? 33.359 39.287 4.016 1.00 18.88 ? 6 DC A "C4'" 1
ATOM 110 O "O4'" . DC A 1 6 ? 33.204 38.121 3.176 1.00 19.02 ? 6 DC A "O4'" 1
ATOM 111 C "C3'" . DC A 1 6 ? 31.947 39.834 4.166 1.00 20.03 ? 6 DC A "C3'" 1
ATOM 112 O "O3'" . DC A 1 6 ? 31.969 41.229 4.476 1.00 22.08 ? 6 DC A "O3'" 1
ATOM 113 C "C2'" . DC A 1 6 ? 31.371 39.579 2.788 1.00 18.96 ? 6 DC A "C2'" 1
ATOM 114 C "C1'" . DC A 1 6 ? 32.003 38.238 2.415 1.00 16.96 ? 6 DC A "C1'" 1
ATOM 115 N N1 . DC A 1 6 ? 31.145 37.095 2.750 1.00 16.44 ? 6 DC A N1 1
ATOM 116 C C2 . DC A 1 6 ? 30.117 36.756 1.872 1.00 16.00 ? 6 DC A C2 1
ATOM 117 O O2 . DC A 1 6 ? 29.974 37.424 0.839 1.00 18.24 ? 6 DC A O2 1
ATOM 118 N N3 . DC A 1 6 ? 29.306 35.713 2.167 1.00 14.93 ? 6 DC A N3 1
ATOM 119 C C4 . DC A 1 6 ? 29.499 35.017 3.288 1.00 15.01 ? 6 DC A C4 1
ATOM 120 N N4 . DC A 1 6 ? 28.677 33.987 3.530 1.00 15.39 ? 6 DC A N4 1
ATOM 121 C C5 . DC A 1 6 ? 30.545 35.342 4.207 1.00 14.93 ? 6 DC A C5 1
ATOM 122 C C6 . DC A 1 6 ? 31.338 36.380 3.898 1.00 15.30 ? 6 DC A C6 1
ATOM 123 P P . DA A 1 7 ? 30.751 41.879 5.301 1.00 23.55 ? 7 DA A P 1
ATOM 124 O OP1 . DA A 1 7 ? 31.202 43.224 5.740 1.00 25.77 ? 7 DA A OP1 1
ATOM 125 O OP2 . DA A 1 7 ? 30.270 40.901 6.310 1.00 23.63 ? 7 DA A OP2 1
ATOM 126 O "O5'" . DA A 1 7 ? 29.600 42.064 4.216 1.00 21.91 ? 7 DA A "O5'" 1
ATOM 127 C "C5'" . DA A 1 7 ? 29.762 42.966 3.121 1.00 22.89 ? 7 DA A "C5'" 1
ATOM 128 C "C4'" . DA A 1 7 ? 28.606 42.831 2.157 1.00 21.14 ? 7 DA A "C4'" 1
ATOM 129 O "O4'" . DA A 1 7 ? 28.586 41.502 1.594 1.00 20.24 ? 7 DA A "O4'" 1
ATOM 130 C "C3'" . DA A 1 7 ? 27.228 43.018 2.780 1.00 21.64 ? 7 DA A "C3'" 1
ATOM 131 O "O3'" . DA A 1 7 ? 26.894 44.411 2.769 1.00 22.96 ? 7 DA A "O3'" 1
ATOM 132 C "C2'" . DA A 1 7 ? 26.336 42.223 1.843 1.00 19.53 ? 7 DA A "C2'" 1
ATOM 133 C "C1'" . DA A 1 7 ? 27.241 41.073 1.397 1.00 19.78 ? 7 DA A "C1'" 1
ATOM 134 N N9 . DA A 1 7 ? 27.060 39.826 2.137 1.00 16.86 ? 7 DA A N9 1
ATOM 135 C C8 . DA A 1 7 ? 27.775 39.377 3.220 1.00 17.00 ? 7 DA A C8 1
ATOM 136 N N7 . DA A 1 7 ? 27.394 38.201 3.655 1.00 17.34 ? 7 DA A N7 1
ATOM 137 C C5 . DA A 1 7 ? 26.351 37.855 2.806 1.00 16.85 ? 7 DA A C5 1
ATOM 138 C C6 . DA A 1 7 ? 25.524 36.720 2.737 1.00 16.10 ? 7 DA A C6 1
ATOM 139 N N6 . DA A 1 7 ? 25.627 35.678 3.563 1.00 16.15 ? 7 DA A N6 1
ATOM 140 N N1 . DA A 1 7 ? 24.577 36.690 1.774 1.00 17.35 ? 7 DA A N1 1
ATOM 141 C C2 . DA A 1 7 ? 24.481 37.730 0.939 1.00 17.22 ? 7 DA A C2 1
ATOM 142 N N3 . DA A 1 7 ? 25.202 38.849 0.899 1.00 16.47 ? 7 DA A N3 1
ATOM 143 C C4 . DA A 1 7 ? 26.131 38.849 1.871 1.00 16.46 ? 7 DA A C4 1
ATOM 144 P P . DC A 1 8 ? 26.018 45.037 3.962 1.00 24.30 ? 8 DC A P 1
ATOM 145 O OP1 . DC A 1 8 ? 26.023 46.514 3.798 1.00 25.64 ? 8 DC A OP1 1
ATOM 146 O OP2 . DC A 1 8 ? 26.484 44.440 5.238 1.00 27.06 ? 8 DC A OP2 1
ATOM 147 O "O5'" . DC A 1 8 ? 24.543 44.512 3.672 1.00 23.62 ? 8 DC A "O5'" 1
ATOM 148 C "C5'" . DC A 1 8 ? 23.850 44.923 2.494 1.00 24.08 ? 8 DC A "C5'" 1
ATOM 149 C "C4'" . DC A 1 8 ? 22.619 44.073 2.279 1.00 25.95 ? 8 DC A "C4'" 1
ATOM 150 O "O4'" . DC A 1 8 ? 22.998 42.702 2.047 1.00 25.18 ? 8 DC A "O4'" 1
ATOM 151 C "C3'" . DC A 1 8 ? 21.668 44.003 3.464 1.00 27.36 ? 8 DC A "C3'" 1
ATOM 152 O "O3'" . DC A 1 8 ? 20.869 45.185 3.549 1.00 29.49 ? 8 DC A "O3'" 1
ATOM 153 C "C2'" . DC A 1 8 ? 20.911 42.715 3.197 1.00 27.60 ? 8 DC A "C2'" 1
ATOM 154 C "C1'" . DC A 1 8 ? 21.965 41.836 2.521 1.00 25.26 ? 8 DC A "C1'" 1
ATOM 155 N N1 . DC A 1 8 ? 22.584 40.825 3.391 1.00 22.19 ? 8 DC A N1 1
ATOM 156 C C2 . DC A 1 8 ? 22.024 39.546 3.431 1.00 21.23 ? 8 DC A C2 1
ATOM 157 O O2 . DC A 1 8 ? 21.009 39.322 2.763 1.00 22.51 ? 8 DC A O2 1
ATOM 158 N N3 . DC A 1 8 ? 22.601 38.592 4.199 1.00 21.30 ? 8 DC A N3 1
ATOM 159 C C4 . DC A 1 8 ? 23.687 38.884 4.918 1.00 19.77 ? 8 DC A C4 1
ATOM 160 N N4 . DC A 1 8 ? 24.229 37.910 5.653 1.00 21.20 ? 8 DC A N4 1
ATOM 161 C C5 . DC A 1 8 ? 24.267 40.189 4.912 1.00 20.39 ? 8 DC A C5 1
ATOM 162 C C6 . DC A 1 8 ? 23.688 41.119 4.140 1.00 20.54 ? 8 DC A C6 1
HETATM 163 O O . HOH B 2 . ? 28.957 32.226 5.753 1.00 31.60 ? 100 HOH A O 1
HETATM 164 O O . HOH B 2 . ? 25.920 16.520 -0.968 1.00 26.64 ? 101 HOH A O 1
HETATM 165 O O . HOH B 2 . ? 28.229 14.839 -7.424 1.00 17.10 ? 102 HOH A O 1
HETATM 166 O O . HOH B 2 . ? 19.883 40.185 5.792 1.00 26.25 ? 103 HOH A O 1
HETATM 167 O O . HOH B 2 . ? 18.307 42.495 1.440 1.00 38.47 ? 104 HOH A O 1
HETATM 168 O O . HOH B 2 . ? 27.931 36.724 5.945 1.00 30.95 ? 105 HOH A O 1
HETATM 169 O O . HOH B 2 . ? 25.700 42.605 6.920 1.00 29.61 ? 106 HOH A O 1
HETATM 170 O O . HOH B 2 . ? 26.393 38.241 7.478 1.00 26.25 ? 107 HOH A O 1
HETATM 171 O O . HOH B 2 . ? 31.419 23.033 -6.874 1.00 30.99 ? 108 HOH A O 1
HETATM 172 O O . HOH B 2 . ? 27.397 20.350 -3.448 1.00 34.47 ? 109 HOH A O 1
HETATM 173 O O . HOH B 2 . ? 31.213 25.902 -2.873 1.00 39.17 ? 110 HOH A O 1
HETATM 174 O O . HOH B 2 . ? 30.193 30.066 4.342 1.00 30.10 ? 111 HOH A O 1
HETATM 175 O O . HOH B 2 . ? 38.116 25.705 3.381 1.00 26.04 ? 112 HOH A O 1
HETATM 176 O O . HOH B 2 . ? 33.684 24.827 -6.147 1.00 34.10 ? 114 HOH A O 1
HETATM 177 O O . HOH B 2 . ? 27.475 40.667 7.172 1.00 38.50 ? 116 HOH A O 1
HETATM 178 O O . HOH B 2 . ? 30.370 24.254 -0.379 1.00 36.86 ? 117 HOH A O 1
HETATM 179 O O . HOH B 2 . ? 20.835 38.724 0.076 1.00 27.49 ? 118 HOH A O 1
HETATM 180 O O . HOH B 2 . ? 27.213 17.019 -8.716 1.00 23.22 ? 125 HOH A O 1
HETATM 181 O O . HOH B 2 . ? 28.338 19.526 -8.012 1.00 28.80 ? 126 HOH A O 1
HETATM 182 O O . HOH B 2 . ? 36.828 37.297 9.678 1.00 44.32 ? 127 HOH A O 1
HETATM 183 O O . HOH B 2 . ? 39.104 25.486 5.901 1.00 39.38 ? 128 HOH A O 1
HETATM 184 O O . HOH B 2 . ? 37.424 33.446 10.943 1.00 43.55 ? 129 HOH A O 1
HETATM 185 O O . HOH B 2 . ? 23.303 48.063 5.234 1.00 44.81 ? 130 HOH A O 1
HETATM 186 O O . HOH B 2 . ? 38.550 29.961 12.815 1.00 47.55 ? 131 HOH A O 1
HETATM 187 O O . HOH B 2 . ? 36.754 27.888 11.244 1.00 47.31 ? 132 HOH A O 1
HETATM 188 O O . HOH B 2 . ? 37.169 39.769 7.202 1.00 38.50 ? 133 HOH A O 1
HETATM 189 O O . HOH B 2 . ? 29.327 21.911 0.356 1.00 39.38 ? 134 HOH A O 1
HETATM 190 O O . HOH B 2 . ? 24.787 17.537 -7.312 1.00 41.33 ? 135 HOH A O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 UMS 2 2 2 UMS UMS A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 TTI 4 4 4 TTI TTI A . n
A 1 5 DA 5 5 5 DA A A . n
A 1 6 DC 6 6 6 DC C A . n
A 1 7 DA 7 7 7 DA A A . n
A 1 8 DC 8 8 8 DC C A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 100 100 HOH HOH A .
B 2 HOH 2 101 101 HOH HOH A .
B 2 HOH 3 102 102 HOH HOH A .
B 2 HOH 4 103 103 HOH HOH A .
B 2 HOH 5 104 104 HOH HOH A .
B 2 HOH 6 105 105 HOH HOH A .
B 2 HOH 7 106 106 HOH HOH A .
B 2 HOH 8 107 107 HOH HOH A .
B 2 HOH 9 108 108 HOH HOH A .
B 2 HOH 10 109 109 HOH HOH A .
B 2 HOH 11 110 110 HOH HOH A .
B 2 HOH 12 111 111 HOH HOH A .
B 2 HOH 13 112 112 HOH HOH A .
B 2 HOH 14 114 114 HOH HOH A .
B 2 HOH 15 116 116 HOH HOH A .
B 2 HOH 16 117 117 HOH HOH A .
B 2 HOH 17 118 118 HOH HOH A .
B 2 HOH 18 125 125 HOH HOH A .
B 2 HOH 19 126 126 HOH HOH A .
B 2 HOH 20 127 127 HOH HOH A .
B 2 HOH 21 128 128 HOH HOH A .
B 2 HOH 22 129 129 HOH HOH A .
B 2 HOH 23 130 130 HOH HOH A .
B 2 HOH 24 131 131 HOH HOH A .
B 2 HOH 25 132 132 HOH HOH A .
B 2 HOH 26 133 133 HOH HOH A .
B 2 HOH 27 134 134 HOH HOH A .
B 2 HOH 28 135 135 HOH HOH A .
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A UMS 2 A UMS 2 ? DU ?
2 A TTI 4 A TTI 4 ? DU ?
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2009-01-27
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2023-09-06
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
5 3 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp_atom
2 3 'Structure model' chem_comp_bond
3 3 'Structure model' database_2
4 3 'Structure model' pdbx_initial_refinement_model
5 3 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
loop_
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
_software.pdbx_ordinal
d*TREK 9.9BNLDz 'Mar 25 2008' package 'Jim W. Pflugrath' Jim.Pflugrath@Rigaku.com 'data processing'
http://www.rigaku.com/software/dtrek.html ? ? 1
CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/
Fortran_77 ? 2
PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3
ADSC Quantum ? ? ? ? 'data collection' ? ? ? 4
HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5
d*TREK . ? ? ? ? 'data scaling' ? ? ? 6
CNS . ? ? ? ? phasing ? ? ? 7
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
HOH O O N N 108
HOH H1 H N N 109
HOH H2 H N N 110
TTI O3P O N N 111
TTI N1 N N N 112
TTI C2 C N N 113
TTI O2 O N N 114
TTI N3 N N N 115
TTI C4 C N N 116
TTI O4 O N N 117
TTI C5 C N N 118
TTI C6 C N N 119
TTI "C1'" C N R 120
TTI "C2'" C N N 121
TTI "C3'" C N S 122
TTI "O3'" O N N 123
TTI "C4'" C N R 124
TTI "O4'" O N N 125
TTI "C5'" C N N 126
TTI "O5'" O N N 127
TTI P P N N 128
TTI O1P O N N 129
TTI O2P O N N 130
TTI TE5 TE N N 131
TTI HO3P H N N 132
TTI HN3 H N N 133
TTI H6 H N N 134
TTI H6A H N N 135
TTI "H1'" H N N 136
TTI "H2'" H N N 137
TTI "H2'A" H N N 138
TTI "H3'" H N N 139
TTI "HO3'" H N N 140
TTI "H4'" H N N 141
TTI "H5'" H N N 142
TTI "H5'A" H N N 143
TTI HO2P H N N 144
UMS OP3 O N N 145
UMS P P N N 146
UMS OP1 O N N 147
UMS OP2 O N N 148
UMS "O5'" O N N 149
UMS "C5'" C N N 150
UMS "C4'" C N R 151
UMS "O4'" O N N 152
UMS "C3'" C N R 153
UMS "O3'" O N N 154
UMS "C2'" C N R 155
UMS "SE2'" SE N N 156
UMS "C1'" C N R 157
UMS "CA'" C N N 158
UMS N1 N N N 159
UMS C2 C N N 160
UMS O2 O N N 161
UMS N3 N N N 162
UMS C4 C N N 163
UMS O4 O N N 164
UMS C5 C N N 165
UMS C6 C N N 166
UMS HOP3 H N N 167
UMS HOP2 H N N 168
UMS "H5'" H N N 169
UMS "H5'2" H N N 170
UMS "H4'" H N N 171
UMS "H3'" H N N 172
UMS "HO3'" H N N 173
UMS "H2'" H N N 174
UMS "H1'" H N N 175
UMS "HA'" H N N 176
UMS "HA'2" H N N 177
UMS "HA'3" H N N 178
UMS H3 H N N 179
UMS H5 H N N 180
UMS H6 H N N 181
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
HOH O H1 sing N N 113
HOH O H2 sing N N 114
TTI O3P P sing N N 115
TTI O3P HO3P sing N N 116
TTI C2 N1 sing N N 117
TTI N1 C6 sing N N 118
TTI N1 "C1'" sing N N 119
TTI N3 C2 sing N N 120
TTI O2 C2 doub N N 121
TTI N3 C4 sing N N 122
TTI N3 HN3 sing N N 123
TTI O4 C4 doub N N 124
TTI C4 C5 sing N N 125
TTI C5 TE5 doub N N 126
TTI C5 C6 sing N N 127
TTI C6 H6 sing N N 128
TTI C6 H6A sing N N 129
TTI "C1'" "O4'" sing N N 130
TTI "C1'" "C2'" sing N N 131
TTI "C1'" "H1'" sing N N 132
TTI "C2'" "C3'" sing N N 133
TTI "C2'" "H2'" sing N N 134
TTI "C2'" "H2'A" sing N N 135
TTI "C4'" "C3'" sing N N 136
TTI "C3'" "O3'" sing N N 137
TTI "C3'" "H3'" sing N N 138
TTI "O3'" "HO3'" sing N N 139
TTI "O4'" "C4'" sing N N 140
TTI "C4'" "C5'" sing N N 141
TTI "C4'" "H4'" sing N N 142
TTI "O5'" "C5'" sing N N 143
TTI "C5'" "H5'" sing N N 144
TTI "C5'" "H5'A" sing N N 145
TTI "O5'" P sing N N 146
TTI O1P P doub N N 147
TTI P O2P sing N N 148
TTI O2P HO2P sing N N 149
UMS OP3 P sing N N 150
UMS OP3 HOP3 sing N N 151
UMS P OP1 doub N N 152
UMS P OP2 sing N N 153
UMS P "O5'" sing N N 154
UMS OP2 HOP2 sing N N 155
UMS "O5'" "C5'" sing N N 156
UMS "C5'" "C4'" sing N N 157
UMS "C5'" "H5'" sing N N 158
UMS "C5'" "H5'2" sing N N 159
UMS "C4'" "O4'" sing N N 160
UMS "C4'" "C3'" sing N N 161
UMS "C4'" "H4'" sing N N 162
UMS "O4'" "C1'" sing N N 163
UMS "C3'" "O3'" sing N N 164
UMS "C3'" "C2'" sing N N 165
UMS "C3'" "H3'" sing N N 166
UMS "O3'" "HO3'" sing N N 167
UMS "C2'" "SE2'" sing N N 168
UMS "C2'" "C1'" sing N N 169
UMS "C2'" "H2'" sing N N 170
UMS "SE2'" "CA'" sing N N 171
UMS "C1'" N1 sing N N 172
UMS "C1'" "H1'" sing N N 173
UMS "CA'" "HA'" sing N N 174
UMS "CA'" "HA'2" sing N N 175
UMS "CA'" "HA'3" sing N N 176
UMS N1 C2 sing N N 177
UMS N1 C6 sing N N 178
UMS C2 O2 doub N N 179
UMS C2 N3 sing N N 180
UMS N3 C4 sing N N 181
UMS N3 H3 sing N N 182
UMS C4 O4 doub N N 183
UMS C4 C5 sing N N 184
UMS C5 C6 doub N N 185
UMS C5 H5 sing N N 186
UMS C6 H6 sing N N 187
#
_ndb_struct_conf_na.entry_id 3FA1
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 7_555 -0.490 -0.144 0.089 -9.556 -13.609 1.936 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A UMS 2 1_555 A DA 7 7_555 -0.015 -0.074 0.193 -7.008 -11.784 3.614 2 A_UMS2:DA7_A A 2 ? A 7 ? 20 1
1 A DG 3 1_555 A DC 6 7_555 -0.185 -0.121 0.169 -3.685 -10.939 3.989 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1
1 A TTI 4 1_555 A DA 5 7_555 -0.077 -0.122 0.361 -5.703 -9.854 -5.837 4 A_TTI4:DA5_A A 4 ? A 5 ? 20 1
1 A DA 5 1_555 A TTI 4 7_555 0.077 -0.122 0.361 5.703 -9.854 -5.837 5 A_DA5:TTI4_A A 5 ? A 4 ? 20 1
1 A DC 6 1_555 A DG 3 7_555 0.185 -0.121 0.169 3.685 -10.939 3.989 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1
1 A DA 7 1_555 A UMS 2 7_555 0.015 -0.074 0.193 7.008 -11.784 3.614 7 A_DA7:UMS2_A A 7 ? A 2 ? 20 1
1 A DC 8 1_555 A DG 1 7_555 0.490 -0.144 0.089 9.556 -13.609 1.936 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 7_555 A UMS 2 1_555 A DA 7 7_555 0.227 -1.058 3.323 -0.961 10.591 33.772 -3.256 -0.512 2.864 17.694
1.606 35.360 1 AA_DG1UMS2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A UMS 2 1_555 A DA 7 7_555 A DG 3 1_555 A DC 6 7_555 0.614 -1.434 3.054 1.046 11.385 29.753 -4.403 -0.955 2.378 21.213
-1.950 31.827 2 AA_UMS2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DG 3 1_555 A DC 6 7_555 A TTI 4 1_555 A DA 5 7_555 -0.508 -1.646 3.381 -0.462 0.296 35.301 -2.759 0.766 3.374 0.488
0.761 35.305 3 AA_DG3TTI4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A TTI 4 1_555 A DA 5 7_555 A DA 5 1_555 A TTI 4 7_555 0.000 -1.691 2.857 0.000 3.428 28.740 -4.024 0.000 2.642 6.875
0.000 28.940 4 AA_TTI4DA5:TTI4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DA 5 1_555 A TTI 4 7_555 A DC 6 1_555 A DG 3 7_555 0.508 -1.646 3.381 0.462 0.296 35.301 -2.759 -0.766 3.374 0.488
-0.761 35.305 5 AA_DA5DC6:DG3TTI4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A DC 6 1_555 A DG 3 7_555 A DA 7 1_555 A UMS 2 7_555 -0.614 -1.434 3.054 -1.046 11.385 29.753 -4.403 0.955 2.378 21.213
1.950 31.828 6 AA_DC6DA7:UMS2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A DA 7 1_555 A UMS 2 7_555 A DC 8 1_555 A DG 1 7_555 -0.227 -1.058 3.323 0.961 10.591 33.772 -3.256 0.512 2.864 17.694
-1.606 35.360 7 AA_DA7DC8:DG1UMS2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1DNS
_pdbx_initial_refinement_model.details ?
#