data_3DGJ
#
_entry.id 3DGJ
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3DGJ pdb_00003dgj 10.2210/pdb3dgj/pdb
RCSB RCSB048010 ? ?
WWPDB D_1000048010 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2008-07-01
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2017-10-25
4 'Structure model' 1 3 2024-02-21
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Refinement description'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' software
2 4 'Structure model' chem_comp_atom
3 4 'Structure model' chem_comp_bond
4 4 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.entry_id 3DGJ
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2008-06-13
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 3DG1
_pdbx_database_related.details 'Another segment from IAPP'
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Wiltzius, J.J.' 1
'Sievers, S.A.' 2
'Sawaya, M.R.' 3
'Cascio, D.' 4
'Eisenberg, D.' 5
#
_citation.id primary
_citation.title 'Atomic structure of the cross-beta spine of islet amyloid polypeptide (amylin).'
_citation.journal_abbrev 'Protein Sci.'
_citation.journal_volume 17
_citation.page_first 1467
_citation.page_last 1474
_citation.year 2008
_citation.journal_id_ASTM PRCIEI
_citation.country US
_citation.journal_id_ISSN 0961-8368
_citation.journal_id_CSD 0795
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 18556473
_citation.pdbx_database_id_DOI 10.1110/ps.036509.108
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Wiltzius, J.J.' 1 ?
primary 'Sievers, S.A.' 2 ?
primary 'Sawaya, M.R.' 3 ?
primary 'Cascio, D.' 4 ?
primary 'Popov, D.' 5 ?
primary 'Riekel, C.' 6 ?
primary 'Eisenberg, D.' 7 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'NNFGAIL peptide' 747.840 1 ? ? ? ?
2 water nat water 18.015 1 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code NNFGAIL
_entity_poly.pdbx_seq_one_letter_code_can NNFGAIL
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ASN n
1 2 ASN n
1 3 PHE n
1 4 GLY n
1 5 ALA n
1 6 ILE n
1 7 LEU n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ASN 1 2 2 ASN ASN A . n
A 1 2 ASN 2 3 3 ASN ASN A . n
A 1 3 PHE 3 4 4 PHE PHE A . n
A 1 4 GLY 4 5 5 GLY GLY A . n
A 1 5 ALA 5 6 6 ALA ALA A . n
A 1 6 ILE 6 7 7 ILE ILE A . n
A 1 7 LEU 7 8 8 LEU LEU A . n
#
_pdbx_nonpoly_scheme.asym_id B
_pdbx_nonpoly_scheme.entity_id 2
_pdbx_nonpoly_scheme.mon_id HOH
_pdbx_nonpoly_scheme.ndb_seq_num 1
_pdbx_nonpoly_scheme.pdb_seq_num 1
_pdbx_nonpoly_scheme.auth_seq_num 1
_pdbx_nonpoly_scheme.pdb_mon_id HOH
_pdbx_nonpoly_scheme.auth_mon_id HOH
_pdbx_nonpoly_scheme.pdb_strand_id A
_pdbx_nonpoly_scheme.pdb_ins_code .
#
loop_
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
_software.pdbx_ordinal
XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling'
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 1
PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 2
REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement
http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3
PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4
XDS . ? ? ? ? 'data reduction' ? ? ? 5
#
_cell.length_a 26.190
_cell.length_b 4.897
_cell.length_c 31.380
_cell.angle_alpha 90.000
_cell.angle_beta 90.000
_cell.angle_gamma 90.000
_cell.entry_id 3DGJ
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.entry_id 3DGJ
_symmetry.Int_Tables_number 19
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
_exptl.crystals_number 1
_exptl.entry_id 3DGJ
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_details '20% ethylene glycol, no buffer, VAPOR DIFFUSION, HANGING DROP, temperature 293K'
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MAR CCD 165 mm'
_diffrn_detector.pdbx_collection_date 2007-10-09
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator 'Si(III)'
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.0
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID13'
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.0
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID13
#
_reflns.entry_id 3DGJ
_reflns.d_resolution_high 1.800
_reflns.number_obs 481
_reflns.pdbx_Rmerge_I_obs 0.158
_reflns.pdbx_netI_over_sigmaI 8.980
_reflns.percent_possible_obs 98.800
_reflns.B_iso_Wilson_estimate 13.747
_reflns.observed_criterion_sigma_I -3.00
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 20.11
_reflns.number_all 481
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.80
_reflns_shell.d_res_low 1.90
_reflns_shell.number_measured_obs 901
_reflns_shell.number_measured_all ?
_reflns_shell.number_unique_obs 62
_reflns_shell.Rmerge_I_obs 0.294
_reflns_shell.meanI_over_sigI_obs 3.8
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.percent_possible_all 98.40
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 3DGJ
_refine.ls_d_res_high 1.800
_refine.ls_d_res_low 20.110
_refine.pdbx_ls_sigma_F 0.00
_refine.ls_percent_reflns_obs 98.770
_refine.ls_number_reflns_obs 481
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.ls_R_factor_obs 0.166
_refine.ls_R_factor_R_work 0.160
_refine.ls_R_factor_R_free 0.217
_refine.ls_percent_reflns_R_free 10.200
_refine.ls_number_reflns_R_free 49
_refine.B_iso_mean 5.491
_refine.aniso_B[1][1] 0.110
_refine.aniso_B[2][2] -0.360
_refine.aniso_B[3][3] 0.250
_refine.aniso_B[1][2] 0.000
_refine.aniso_B[1][3] 0.000
_refine.aniso_B[2][3] 0.000
_refine.correlation_coeff_Fo_to_Fc 0.961
_refine.correlation_coeff_Fo_to_Fc_free 0.953
_refine.pdbx_overall_ESU_R 0.168
_refine.pdbx_overall_ESU_R_Free 0.152
_refine.overall_SU_ML 0.067
_refine.overall_SU_B 2.255
_refine.solvent_model_details MASK
_refine.pdbx_solvent_vdw_probe_radii 1.400
_refine.pdbx_solvent_ion_probe_radii 0.800
_refine.pdbx_solvent_shrinkage_radii 0.800
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.overall_FOM_work_R_set 0.958
_refine.B_iso_max 12.59
_refine.B_iso_min 2.12
_refine.occupancy_max 1.00
_refine.occupancy_min 0.50
_refine.pdbx_ls_sigma_I ?
_refine.ls_number_reflns_all 481
_refine.ls_R_factor_all .166
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_starting_model ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_isotropic_thermal_model ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 59
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 1
_refine_hist.number_atoms_total 60
_refine_hist.d_res_high 1.800
_refine_hist.d_res_low 20.110
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 60 0.007 0.022 ? 'X-RAY DIFFRACTION' ?
r_bond_other_d 35 0.001 0.020 ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 82 1.150 2.041 ? 'X-RAY DIFFRACTION' ?
r_angle_other_deg 88 0.811 3.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 7 5.404 5.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 3 29.048 26.667 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 9 12.588 15.000 ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 10 0.080 0.200 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 68 0.002 0.020 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_other 12 0.000 0.020 ? 'X-RAY DIFFRACTION' ?
r_nbd_refined 3 0.028 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbd_other 28 0.179 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined 30 0.153 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbtor_other 28 0.077 0.200 ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 1 0.131 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 3 0.112 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other 5 0.204 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 5 0.040 0.200 ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 52 1.260 2.000 ? 'X-RAY DIFFRACTION' ?
r_mcbond_other 15 0.277 2.000 ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 59 1.484 3.000 ? 'X-RAY DIFFRACTION' ?
r_scbond_it 25 0.802 2.000 ? 'X-RAY DIFFRACTION' ?
r_scangle_it 22 1.133 3.000 ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.d_res_high 1.80
_refine_ls_shell.d_res_low 2.014
_refine_ls_shell.pdbx_total_number_of_bins_used 5
_refine_ls_shell.percent_reflns_obs 98.400
_refine_ls_shell.number_reflns_R_work 111
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.249
_refine_ls_shell.R_factor_R_free 0.398
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 12
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all 123
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 3DGJ
_struct.title 'NNFGAIL segment from Islet Amyloid Polypeptide (IAPP or amylin)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag N
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3DGJ
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
_struct_keywords.text 'IAPP, amylin, amyloid, steric zipper, PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 3DGJ
_struct_ref.pdbx_db_accession 3DGJ
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3DGJ
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 7
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 3DGJ
_struct_ref_seq.db_align_beg 2
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 2
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details trimeric
_pdbx_struct_assembly.oligomeric_count 3
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 -4.8970000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 4.8970000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.details
;The biological assembly is a fiber that can be generated by repeated application of unit cell translations along the b-cell dimension (X,Y+n,Z) where n is any integer.
;
#
_pdbx_phasing_MR.entry_id 3DGJ
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO'
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation ?
_pdbx_phasing_MR.d_res_low_rotation ?
_pdbx_phasing_MR.d_res_high_translation ?
_pdbx_phasing_MR.d_res_low_translation ?
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ASN N N N N 14
ASN CA C N S 15
ASN C C N N 16
ASN O O N N 17
ASN CB C N N 18
ASN CG C N N 19
ASN OD1 O N N 20
ASN ND2 N N N 21
ASN OXT O N N 22
ASN H H N N 23
ASN H2 H N N 24
ASN HA H N N 25
ASN HB2 H N N 26
ASN HB3 H N N 27
ASN HD21 H N N 28
ASN HD22 H N N 29
ASN HXT H N N 30
GLY N N N N 31
GLY CA C N N 32
GLY C C N N 33
GLY O O N N 34
GLY OXT O N N 35
GLY H H N N 36
GLY H2 H N N 37
GLY HA2 H N N 38
GLY HA3 H N N 39
GLY HXT H N N 40
HOH O O N N 41
HOH H1 H N N 42
HOH H2 H N N 43
ILE N N N N 44
ILE CA C N S 45
ILE C C N N 46
ILE O O N N 47
ILE CB C N S 48
ILE CG1 C N N 49
ILE CG2 C N N 50
ILE CD1 C N N 51
ILE OXT O N N 52
ILE H H N N 53
ILE H2 H N N 54
ILE HA H N N 55
ILE HB H N N 56
ILE HG12 H N N 57
ILE HG13 H N N 58
ILE HG21 H N N 59
ILE HG22 H N N 60
ILE HG23 H N N 61
ILE HD11 H N N 62
ILE HD12 H N N 63
ILE HD13 H N N 64
ILE HXT H N N 65
LEU N N N N 66
LEU CA C N S 67
LEU C C N N 68
LEU O O N N 69
LEU CB C N N 70
LEU CG C N N 71
LEU CD1 C N N 72
LEU CD2 C N N 73
LEU OXT O N N 74
LEU H H N N 75
LEU H2 H N N 76
LEU HA H N N 77
LEU HB2 H N N 78
LEU HB3 H N N 79
LEU HG H N N 80
LEU HD11 H N N 81
LEU HD12 H N N 82
LEU HD13 H N N 83
LEU HD21 H N N 84
LEU HD22 H N N 85
LEU HD23 H N N 86
LEU HXT H N N 87
PHE N N N N 88
PHE CA C N S 89
PHE C C N N 90
PHE O O N N 91
PHE CB C N N 92
PHE CG C Y N 93
PHE CD1 C Y N 94
PHE CD2 C Y N 95
PHE CE1 C Y N 96
PHE CE2 C Y N 97
PHE CZ C Y N 98
PHE OXT O N N 99
PHE H H N N 100
PHE H2 H N N 101
PHE HA H N N 102
PHE HB2 H N N 103
PHE HB3 H N N 104
PHE HD1 H N N 105
PHE HD2 H N N 106
PHE HE1 H N N 107
PHE HE2 H N N 108
PHE HZ H N N 109
PHE HXT H N N 110
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ASN N CA sing N N 13
ASN N H sing N N 14
ASN N H2 sing N N 15
ASN CA C sing N N 16
ASN CA CB sing N N 17
ASN CA HA sing N N 18
ASN C O doub N N 19
ASN C OXT sing N N 20
ASN CB CG sing N N 21
ASN CB HB2 sing N N 22
ASN CB HB3 sing N N 23
ASN CG OD1 doub N N 24
ASN CG ND2 sing N N 25
ASN ND2 HD21 sing N N 26
ASN ND2 HD22 sing N N 27
ASN OXT HXT sing N N 28
GLY N CA sing N N 29
GLY N H sing N N 30
GLY N H2 sing N N 31
GLY CA C sing N N 32
GLY CA HA2 sing N N 33
GLY CA HA3 sing N N 34
GLY C O doub N N 35
GLY C OXT sing N N 36
GLY OXT HXT sing N N 37
HOH O H1 sing N N 38
HOH O H2 sing N N 39
ILE N CA sing N N 40
ILE N H sing N N 41
ILE N H2 sing N N 42
ILE CA C sing N N 43
ILE CA CB sing N N 44
ILE CA HA sing N N 45
ILE C O doub N N 46
ILE C OXT sing N N 47
ILE CB CG1 sing N N 48
ILE CB CG2 sing N N 49
ILE CB HB sing N N 50
ILE CG1 CD1 sing N N 51
ILE CG1 HG12 sing N N 52
ILE CG1 HG13 sing N N 53
ILE CG2 HG21 sing N N 54
ILE CG2 HG22 sing N N 55
ILE CG2 HG23 sing N N 56
ILE CD1 HD11 sing N N 57
ILE CD1 HD12 sing N N 58
ILE CD1 HD13 sing N N 59
ILE OXT HXT sing N N 60
LEU N CA sing N N 61
LEU N H sing N N 62
LEU N H2 sing N N 63
LEU CA C sing N N 64
LEU CA CB sing N N 65
LEU CA HA sing N N 66
LEU C O doub N N 67
LEU C OXT sing N N 68
LEU CB CG sing N N 69
LEU CB HB2 sing N N 70
LEU CB HB3 sing N N 71
LEU CG CD1 sing N N 72
LEU CG CD2 sing N N 73
LEU CG HG sing N N 74
LEU CD1 HD11 sing N N 75
LEU CD1 HD12 sing N N 76
LEU CD1 HD13 sing N N 77
LEU CD2 HD21 sing N N 78
LEU CD2 HD22 sing N N 79
LEU CD2 HD23 sing N N 80
LEU OXT HXT sing N N 81
PHE N CA sing N N 82
PHE N H sing N N 83
PHE N H2 sing N N 84
PHE CA C sing N N 85
PHE CA CB sing N N 86
PHE CA HA sing N N 87
PHE C O doub N N 88
PHE C OXT sing N N 89
PHE CB CG sing N N 90
PHE CB HB2 sing N N 91
PHE CB HB3 sing N N 92
PHE CG CD1 doub Y N 93
PHE CG CD2 sing Y N 94
PHE CD1 CE1 sing Y N 95
PHE CD1 HD1 sing N N 96
PHE CD2 CE2 doub Y N 97
PHE CD2 HD2 sing N N 98
PHE CE1 CZ doub Y N 99
PHE CE1 HE1 sing N N 100
PHE CE2 CZ sing Y N 101
PHE CE2 HE2 sing N N 102
PHE CZ HZ sing N N 103
PHE OXT HXT sing N N 104
#
_atom_sites.entry_id 3DGJ
_atom_sites.fract_transf_matrix[1][1] 0.038183
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.204207
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.031867
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . ASN A 1 1 ? -11.458 -0.999 6.734 1.00 5.91 ? 2 ASN A N 1
ATOM 2 C CA . ASN A 1 1 ? -10.235 -0.271 7.192 1.00 3.86 ? 2 ASN A CA 1
ATOM 3 C C . ASN A 1 1 ? -8.951 -1.040 6.901 1.00 4.80 ? 2 ASN A C 1
ATOM 4 O O . ASN A 1 1 ? -8.919 -2.272 6.990 1.00 3.04 ? 2 ASN A O 1
ATOM 5 C CB . ASN A 1 1 ? -10.299 0.013 8.695 1.00 4.18 ? 2 ASN A CB 1
ATOM 6 C CG . ASN A 1 1 ? -11.438 0.935 9.074 1.00 5.88 ? 2 ASN A CG 1
ATOM 7 O OD1 . ASN A 1 1 ? -11.949 1.688 8.240 1.00 6.40 ? 2 ASN A OD1 1
ATOM 8 N ND2 . ASN A 1 1 ? -11.836 0.892 10.343 1.00 5.29 ? 2 ASN A ND2 1
ATOM 9 N N . ASN A 1 2 ? -7.891 -0.297 6.581 1.00 4.28 ? 3 ASN A N 1
ATOM 10 C CA . ASN A 1 2 ? -6.563 -0.861 6.341 1.00 3.59 ? 3 ASN A CA 1
ATOM 11 C C . ASN A 1 2 ? -5.654 -0.594 7.534 1.00 3.56 ? 3 ASN A C 1
ATOM 12 O O . ASN A 1 2 ? -5.444 0.559 7.893 1.00 6.16 ? 3 ASN A O 1
ATOM 13 C CB . ASN A 1 2 ? -5.939 -0.238 5.085 1.00 4.29 ? 3 ASN A CB 1
ATOM 14 C CG . ASN A 1 2 ? -4.515 -0.720 4.831 1.00 3.08 ? 3 ASN A CG 1
ATOM 15 O OD1 . ASN A 1 2 ? -4.235 -1.912 4.920 1.00 3.67 ? 3 ASN A OD1 1
ATOM 16 N ND2 . ASN A 1 2 ? -3.613 0.209 4.506 1.00 2.44 ? 3 ASN A ND2 1
ATOM 17 N N . PHE A 1 3 ? -5.116 -1.661 8.119 1.00 3.54 ? 4 PHE A N 1
ATOM 18 C CA . PHE A 1 3 ? -4.169 -1.591 9.228 1.00 3.43 ? 4 PHE A CA 1
ATOM 19 C C . PHE A 1 3 ? -2.786 -2.152 8.832 1.00 2.81 ? 4 PHE A C 1
ATOM 20 O O . PHE A 1 3 ? -1.937 -2.395 9.694 1.00 2.34 ? 4 PHE A O 1
ATOM 21 C CB . PHE A 1 3 ? -4.732 -2.361 10.433 1.00 4.20 ? 4 PHE A CB 1
ATOM 22 C CG . PHE A 1 3 ? -5.973 -1.743 11.028 1.00 3.86 ? 4 PHE A CG 1
ATOM 23 C CD1 . PHE A 1 3 ? -5.871 -0.689 11.929 1.00 4.86 ? 4 PHE A CD1 1
ATOM 24 C CD2 . PHE A 1 3 ? -7.242 -2.209 10.684 1.00 3.51 ? 4 PHE A CD2 1
ATOM 25 C CE1 . PHE A 1 3 ? -7.013 -0.104 12.485 1.00 3.86 ? 4 PHE A CE1 1
ATOM 26 C CE2 . PHE A 1 3 ? -8.399 -1.633 11.243 1.00 3.16 ? 4 PHE A CE2 1
ATOM 27 C CZ . PHE A 1 3 ? -8.280 -0.583 12.140 1.00 4.58 ? 4 PHE A CZ 1
ATOM 28 N N . GLY A 1 4 ? -2.560 -2.344 7.534 1.00 3.20 ? 5 GLY A N 1
ATOM 29 C CA . GLY A 1 4 ? -1.276 -2.840 7.033 1.00 2.12 ? 5 GLY A CA 1
ATOM 30 C C . GLY A 1 4 ? -0.806 -2.110 5.787 1.00 2.57 ? 5 GLY A C 1
ATOM 31 O O . GLY A 1 4 ? -1.232 -0.987 5.521 1.00 2.79 ? 5 GLY A O 1
ATOM 32 N N . ALA A 1 5 ? 0.068 -2.758 5.018 1.00 2.26 ? 6 ALA A N 1
ATOM 33 C CA . ALA A 1 5 ? 0.608 -2.191 3.781 1.00 2.62 ? 6 ALA A CA 1
ATOM 34 C C . ALA A 1 5 ? -0.105 -2.774 2.559 1.00 3.90 ? 6 ALA A C 1
ATOM 35 O O . ALA A 1 5 ? -0.226 -3.984 2.420 1.00 4.85 ? 6 ALA A O 1
ATOM 36 C CB . ALA A 1 5 ? 2.103 -2.448 3.689 1.00 2.79 ? 6 ALA A CB 1
ATOM 37 N N . ILE A 1 6 ? -0.581 -1.890 1.690 1.00 4.13 ? 7 ILE A N 1
ATOM 38 C CA . ILE A 1 6 ? -1.131 -2.254 0.388 1.00 4.94 ? 7 ILE A CA 1
ATOM 39 C C . ILE A 1 6 ? -0.101 -1.738 -0.613 1.00 6.58 ? 7 ILE A C 1
ATOM 40 O O . ILE A 1 6 ? -0.069 -0.547 -0.931 1.00 8.57 ? 7 ILE A O 1
ATOM 41 C CB . ILE A 1 6 ? -2.521 -1.601 0.175 1.00 4.52 ? 7 ILE A CB 1
ATOM 42 C CG1 . ILE A 1 6 ? -3.490 -2.068 1.273 1.00 6.03 ? 7 ILE A CG1 1
ATOM 43 C CG2 . ILE A 1 6 ? -3.080 -1.923 -1.197 1.00 3.89 ? 7 ILE A CG2 1
ATOM 44 C CD1 . ILE A 1 6 ? -4.878 -1.439 1.221 1.00 6.55 ? 7 ILE A CD1 1
ATOM 45 N N . LEU A 1 7 ? 0.761 -2.640 -1.074 1.00 7.07 ? 8 LEU A N 1
ATOM 46 C CA A LEU A 1 7 ? 1.892 -2.229 -1.898 0.50 8.32 ? 8 LEU A CA 1
ATOM 47 C CA B LEU A 1 7 ? 1.907 -2.308 -1.926 0.50 8.48 ? 8 LEU A CA 1
ATOM 48 C C . LEU A 1 7 ? 1.491 -1.989 -3.359 1.00 10.22 ? 8 LEU A C 1
ATOM 49 O O . LEU A 1 7 ? 2.167 -1.224 -4.060 1.00 10.48 ? 8 LEU A O 1
ATOM 50 C CB A LEU A 1 7 ? 3.037 -3.242 -1.775 0.50 8.40 ? 8 LEU A CB 1
ATOM 51 C CB B LEU A 1 7 ? 2.900 -3.477 -1.940 0.50 8.90 ? 8 LEU A CB 1
ATOM 52 C CG A LEU A 1 7 ? 3.539 -3.480 -0.342 0.50 8.02 ? 8 LEU A CG 1
ATOM 53 C CG B LEU A 1 7 ? 4.223 -3.273 -2.696 0.50 8.50 ? 8 LEU A CG 1
ATOM 54 C CD1 A LEU A 1 7 ? 4.763 -4.390 -0.334 0.50 8.28 ? 8 LEU A CD1 1
ATOM 55 C CD1 B LEU A 1 7 ? 5.292 -2.753 -1.751 0.50 8.95 ? 8 LEU A CD1 1
ATOM 56 C CD2 A LEU A 1 7 ? 3.861 -2.172 0.369 0.50 7.39 ? 8 LEU A CD2 1
ATOM 57 C CD2 B LEU A 1 7 ? 4.685 -4.561 -3.371 0.50 8.92 ? 8 LEU A CD2 1
ATOM 58 O OXT A LEU A 1 7 ? 0.509 -2.539 -3.871 0.50 11.07 ? 8 LEU A OXT 1
ATOM 59 O OXT B LEU A 1 7 ? 0.475 -2.483 -3.862 0.50 11.01 ? 8 LEU A OXT 1
HETATM 60 O O . HOH B 2 . ? -11.635 -0.600 12.510 1.00 12.59 ? 1 HOH A O 1
#