data_3BM0
#
_entry.id 3BM0
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3BM0 pdb_00003bm0 10.2210/pdb3bm0/pdb
NDB AD0072 ? ?
RCSB RCSB045683 ? ?
WWPDB D_1000045683 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2008-06-10
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2024-02-21
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp_atom
2 3 'Structure model' chem_comp_bond
3 3 'Structure model' database_2
4 3 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
_pdbx_database_status.entry_id 3BM0
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2007-12-11
_pdbx_database_status.SG_entry N
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Jiang, J.' 1
'SHeng, J.' 2
'Hassan, A.E.' 3
'Huang, Z.' 4
#
_citation.id primary
_citation.title 'Synthesis and crystallographic analysis of 5-Se-thymidine DNAs.'
_citation.journal_abbrev Org.Lett.
_citation.journal_volume 11
_citation.page_first 2503
_citation.page_last 2506
_citation.year 2009
_citation.journal_id_ASTM ?
_citation.country US
_citation.journal_id_ISSN 1523-7060
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 19469515
_citation.pdbx_database_id_DOI 10.1021/ol9004867
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Hassan, A.E.' 1 ?
primary 'Sheng, J.' 2 ?
primary 'Jiang, J.' 3 ?
primary 'Zhang, W.' 4 ?
primary 'Huang, Z.' 5 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*GP*(2'-Se-U)P*GP*(5-Se-U)P*AP*CP*AP*C)-3'" 2584.537 1 ? ? ? ?
2 water nat water 18.015 28 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(UMS)(DG)(T5S)(DA)(DC)(DA)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GUGTACAC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 UMS n
1 3 DG n
1 4 T5S n
1 5 DA n
1 6 DC n
1 7 DA n
1 8 DC n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
T5S 'DNA linking' n
;2'-deoxy-5-(methylselanyl)uridine 5'-phosphate
;
? 'C10 H15 N2 O8 P Se' 401.168
UMS 'DNA linking' n "2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE" ? 'C10 H15 N2 O8 P Se' 401.168
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 UMS 2 2 2 UMS UMS A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 T5S 4 4 4 T5S T5S A . n
A 1 5 DA 5 5 5 DA A A . n
A 1 6 DC 6 6 6 DC C A . n
A 1 7 DA 7 7 7 DA A A . n
A 1 8 DC 8 8 8 DC C A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 9 1 HOH HOH A .
B 2 HOH 2 10 2 HOH HOH A .
B 2 HOH 3 11 3 HOH HOH A .
B 2 HOH 4 12 4 HOH HOH A .
B 2 HOH 5 13 5 HOH HOH A .
B 2 HOH 6 14 6 HOH HOH A .
B 2 HOH 7 15 7 HOH HOH A .
B 2 HOH 8 16 8 HOH HOH A .
B 2 HOH 9 17 9 HOH HOH A .
B 2 HOH 10 18 10 HOH HOH A .
B 2 HOH 11 19 11 HOH HOH A .
B 2 HOH 12 20 12 HOH HOH A .
B 2 HOH 13 21 13 HOH HOH A .
B 2 HOH 14 22 14 HOH HOH A .
B 2 HOH 15 23 15 HOH HOH A .
B 2 HOH 16 24 16 HOH HOH A .
B 2 HOH 17 25 17 HOH HOH A .
B 2 HOH 18 26 18 HOH HOH A .
B 2 HOH 19 27 19 HOH HOH A .
B 2 HOH 20 28 20 HOH HOH A .
B 2 HOH 21 29 21 HOH HOH A .
B 2 HOH 22 30 22 HOH HOH A .
B 2 HOH 23 31 23 HOH HOH A .
B 2 HOH 24 32 24 HOH HOH A .
B 2 HOH 25 33 25 HOH HOH A .
B 2 HOH 26 34 26 HOH HOH A .
B 2 HOH 27 35 27 HOH HOH A .
B 2 HOH 28 36 28 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
CBASS 'data collection' . ? 1
CNS refinement . ? 2
HKL-2000 'data reduction' . ? 3
HKL-2000 'data scaling' . ? 4
CNS phasing . ? 5
#
_cell.entry_id 3BM0
_cell.length_a 42.087
_cell.length_b 42.087
_cell.length_c 23.772
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3BM0
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.Int_Tables_number 96
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 3BM0
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.41
_exptl_crystal.density_percent_sol 49.00
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pdbx_details
;10% V/V MPD, 40 MM SODIUM CACODYLATE (PH 7.0), 12 MM SPERMINE TETRA-HCL, 80 MM SODIUM CHLORIDE., VAPOR DIFFUSION, HANGING DROP, temperature 298K
;
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.details
1 1 1 MPD ? ? ?
1 2 1 'SODIUM CACODYLATE' ? ? ?
1 3 1 'SPERMINE TETRA-HCL' ? ? ?
1 4 1 NaCl ? ? ?
1 5 2 MPD ? ? ?
1 6 2 'SODIUM CACODYLATE' ? ? ?
1 7 2 'SPERMINE TETRA-HCL' ? ? ?
1 8 2 NaCl ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.pdbx_collection_date 2007-07-28
_diffrn_detector.details mirrors
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator GRAPHITE
_diffrn_radiation.pdbx_diffrn_protocol MAD
_diffrn_radiation.pdbx_scattering_type x-ray
#
loop_
_diffrn_radiation_wavelength.id
_diffrn_radiation_wavelength.wavelength
_diffrn_radiation_wavelength.wt
1 0.9797 1.0
2 1.100 1.0
3 0.9400 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'NSLS BEAMLINE X12C'
_diffrn_source.pdbx_synchrotron_site NSLS
_diffrn_source.pdbx_synchrotron_beamline X12C
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list '0.9797, 1.100, 0.9400'
#
_reflns.entry_id 3BM0
_reflns.observed_criterion_sigma_I 0
_reflns.observed_criterion_sigma_F 0
_reflns.d_resolution_low 40
_reflns.d_resolution_high 1.80
_reflns.number_obs 2087
_reflns.number_all 2198
_reflns.percent_possible_obs 95
_reflns.pdbx_Rmerge_I_obs 0.112
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 10.7
_reflns.B_iso_Wilson_estimate 25.2
_reflns.pdbx_redundancy 9.7
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.80
_reflns_shell.d_res_low 1.86
_reflns_shell.percent_possible_all 95
_reflns_shell.Rmerge_I_obs 0.44
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 10.0
_reflns_shell.pdbx_redundancy 8.2
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 209
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 3BM0
_refine.ls_number_reflns_obs 1922
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.0
_refine.pdbx_data_cutoff_high_absF 692659.79
_refine.pdbx_data_cutoff_low_absF 0.000000
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 15.76
_refine.ls_d_res_high 1.80
_refine.ls_percent_reflns_obs 88.3
_refine.ls_R_factor_obs 0.211
_refine.ls_R_factor_all 0.22
_refine.ls_R_factor_R_work 0.21
_refine.ls_R_factor_R_free 0.226
_refine.ls_R_factor_R_free_error 0.023
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 5.1
_refine.ls_number_reflns_R_free 98
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean 33.9
_refine.aniso_B[1][1] -1.92
_refine.aniso_B[2][2] -1.92
_refine.aniso_B[3][3] 3.84
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'FLAT MODEL'
_refine.solvent_model_param_ksol 0.45
_refine.solvent_model_param_bsol 67.2936
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'BULK SOLVENT MODEL USED'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct MAD
_refine.pdbx_isotropic_thermal_model RESTRAINED
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_phase_error ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 3BM0
_refine_analyze.Luzzati_coordinate_error_obs 0.22
_refine_analyze.Luzzati_sigma_a_obs 0.13
_refine_analyze.Luzzati_d_res_low_obs 5.00
_refine_analyze.Luzzati_coordinate_error_free 0.19
_refine_analyze.Luzzati_sigma_a_free 0.25
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 163
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 28
_refine_hist.number_atoms_total 191
_refine_hist.d_res_high 1.80
_refine_hist.d_res_low 15.76
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ?
c_angle_deg 1.9 ? ? ? 'X-RAY DIFFRACTION' ?
c_dihedral_angle_d 28.9 ? ? ? 'X-RAY DIFFRACTION' ?
c_improper_angle_d 2.31 ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 6
_refine_ls_shell.d_res_high 1.80
_refine_ls_shell.d_res_low 1.91
_refine_ls_shell.number_reflns_R_work 261
_refine_ls_shell.R_factor_R_work 0.214
_refine_ls_shell.percent_reflns_obs 77.9
_refine_ls_shell.R_factor_R_free 0.252
_refine_ls_shell.R_factor_R_free_error 0.076
_refine_ls_shell.percent_reflns_R_free 4.0
_refine_ls_shell.number_reflns_R_free 11
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
loop_
_pdbx_xplor_file.serial_no
_pdbx_xplor_file.param_file
_pdbx_xplor_file.topol_file
_pdbx_xplor_file.pdbx_refine_id
1 protein_rep.param protein.top 'X-RAY DIFFRACTION'
2 dna-rna_ums.par dna-rna.top 'X-RAY DIFFRACTION'
3 ion.param ion.top 'X-RAY DIFFRACTION'
4 water_rep.param water.top 'X-RAY DIFFRACTION'
5 ? ums.top 'X-RAY DIFFRACTION'
#
_struct.entry_id 3BM0
_struct.title 'Structure of DNA Octamer G(dUSe)G(5-SedU)ACAC'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag N
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3BM0
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Selenium modified DNA/RNA, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_code 3BM0
_struct_ref.db_name PDB
_struct_ref.entity_id 1
_struct_ref.pdbx_db_accession 3BM0
_struct_ref.pdbx_align_begin 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3BM0
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 3BM0
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 1930 ?
1 MORE 7 ?
1 'SSA (A^2)' 2910 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0.0000000000 -1.0000000000 0.0000000000 42.0870000000 -1.0000000000
0.0000000000 0.0000000000 42.0870000000 0.0000000000 0.0000000000 -1.0000000000 35.6580000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A UMS 2 P ? ? A DG 1 A UMS 2 1_555 ? ? ? ? ? ? ? 1.610 ? ?
covale2 covale both ? A UMS 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A UMS 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.618 ? ?
covale3 covale both ? A DG 3 "O3'" ? ? ? 1_555 A T5S 4 P ? ? A DG 3 A T5S 4 1_555 ? ? ? ? ? ? ? 1.604 ? ?
covale4 covale both ? A T5S 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A T5S 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.606 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A UMS 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A UMS 2 A DA 7 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A UMS 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A UMS 2 A DA 7 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A UMS 2 N3 ? ? A DA 7 A UMS 2 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A UMS 2 O4 ? ? A DA 7 A UMS 2 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 C5
_pdbx_validate_rmsd_bond.auth_asym_id_1 A
_pdbx_validate_rmsd_bond.auth_comp_id_1 DC
_pdbx_validate_rmsd_bond.auth_seq_id_1 6
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 C6
_pdbx_validate_rmsd_bond.auth_asym_id_2 A
_pdbx_validate_rmsd_bond.auth_comp_id_2 DC
_pdbx_validate_rmsd_bond.auth_seq_id_2 6
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.389
_pdbx_validate_rmsd_bond.bond_target_value 1.339
_pdbx_validate_rmsd_bond.bond_deviation 0.050
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.008
_pdbx_validate_rmsd_bond.linker_flag N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 100.56 108.00 -7.44 0.70 N
2 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 100.49 108.00 -7.51 0.70 N
#
_pdbx_validate_planes.id 1
_pdbx_validate_planes.PDB_model_num 1
_pdbx_validate_planes.auth_comp_id DG
_pdbx_validate_planes.auth_asym_id A
_pdbx_validate_planes.auth_seq_id 3
_pdbx_validate_planes.PDB_ins_code ?
_pdbx_validate_planes.label_alt_id ?
_pdbx_validate_planes.rmsd 0.051
_pdbx_validate_planes.type 'SIDE CHAIN'
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A UMS 2 A UMS 2 ? DU ?
2 A T5S 4 A T5S 4 ? DT ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
HOH O O N N 108
HOH H1 H N N 109
HOH H2 H N N 110
T5S OP3 O N N 111
T5S P P N N 112
T5S OP1 O N N 113
T5S OP2 O N N 114
T5S "O5'" O N N 115
T5S N1 N N N 116
T5S C6 C N N 117
T5S C2 C N N 118
T5S O2 O N N 119
T5S N3 N N N 120
T5S C4 C N N 121
T5S O4 O N N 122
T5S C5 C N N 123
T5S SE SE N N 124
T5S CH3 C N N 125
T5S "C2'" C N N 126
T5S "C5'" C N N 127
T5S "C4'" C N R 128
T5S "O4'" O N N 129
T5S "C1'" C N R 130
T5S "C3'" C N S 131
T5S "O3'" O N N 132
T5S HOP3 H N N 133
T5S HOP2 H N N 134
T5S H6 H N N 135
T5S HN3 H N N 136
T5S HH3 H N N 137
T5S HH3A H N N 138
T5S HH3B H N N 139
T5S "H2'" H N N 140
T5S "H2'A" H N N 141
T5S "H5'" H N N 142
T5S "H5'A" H N N 143
T5S "H4'" H N N 144
T5S "H1'" H N N 145
T5S "H3'" H N N 146
T5S "HO3'" H N N 147
UMS OP3 O N N 148
UMS P P N N 149
UMS OP1 O N N 150
UMS OP2 O N N 151
UMS "O5'" O N N 152
UMS "C5'" C N N 153
UMS "C4'" C N R 154
UMS "O4'" O N N 155
UMS "C3'" C N R 156
UMS "O3'" O N N 157
UMS "C2'" C N R 158
UMS "SE2'" SE N N 159
UMS "C1'" C N R 160
UMS "CA'" C N N 161
UMS N1 N N N 162
UMS C2 C N N 163
UMS O2 O N N 164
UMS N3 N N N 165
UMS C4 C N N 166
UMS O4 O N N 167
UMS C5 C N N 168
UMS C6 C N N 169
UMS HOP3 H N N 170
UMS HOP2 H N N 171
UMS "H5'" H N N 172
UMS "H5'2" H N N 173
UMS "H4'" H N N 174
UMS "H3'" H N N 175
UMS "HO3'" H N N 176
UMS "H2'" H N N 177
UMS "H1'" H N N 178
UMS "HA'" H N N 179
UMS "HA'2" H N N 180
UMS "HA'3" H N N 181
UMS H3 H N N 182
UMS H5 H N N 183
UMS H6 H N N 184
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
HOH O H1 sing N N 113
HOH O H2 sing N N 114
T5S P OP3 sing N N 115
T5S OP3 HOP3 sing N N 116
T5S OP1 P doub N N 117
T5S P OP2 sing N N 118
T5S P "O5'" sing N N 119
T5S OP2 HOP2 sing N N 120
T5S "C5'" "O5'" sing N N 121
T5S "C1'" N1 sing N N 122
T5S C6 N1 sing N N 123
T5S N1 C2 sing N N 124
T5S C6 C5 doub N N 125
T5S C6 H6 sing N N 126
T5S C2 O2 doub N N 127
T5S C2 N3 sing N N 128
T5S C4 N3 sing N N 129
T5S N3 HN3 sing N N 130
T5S C5 C4 sing N N 131
T5S C4 O4 doub N N 132
T5S SE C5 sing N N 133
T5S CH3 SE sing N N 134
T5S CH3 HH3 sing N N 135
T5S CH3 HH3A sing N N 136
T5S CH3 HH3B sing N N 137
T5S "C3'" "C2'" sing N N 138
T5S "C2'" "C1'" sing N N 139
T5S "C2'" "H2'" sing N N 140
T5S "C2'" "H2'A" sing N N 141
T5S "C5'" "C4'" sing N N 142
T5S "C5'" "H5'" sing N N 143
T5S "C5'" "H5'A" sing N N 144
T5S "C3'" "C4'" sing N N 145
T5S "C4'" "O4'" sing N N 146
T5S "C4'" "H4'" sing N N 147
T5S "O4'" "C1'" sing N N 148
T5S "C1'" "H1'" sing N N 149
T5S "O3'" "C3'" sing N N 150
T5S "C3'" "H3'" sing N N 151
T5S "O3'" "HO3'" sing N N 152
UMS OP3 P sing N N 153
UMS OP3 HOP3 sing N N 154
UMS P OP1 doub N N 155
UMS P OP2 sing N N 156
UMS P "O5'" sing N N 157
UMS OP2 HOP2 sing N N 158
UMS "O5'" "C5'" sing N N 159
UMS "C5'" "C4'" sing N N 160
UMS "C5'" "H5'" sing N N 161
UMS "C5'" "H5'2" sing N N 162
UMS "C4'" "O4'" sing N N 163
UMS "C4'" "C3'" sing N N 164
UMS "C4'" "H4'" sing N N 165
UMS "O4'" "C1'" sing N N 166
UMS "C3'" "O3'" sing N N 167
UMS "C3'" "C2'" sing N N 168
UMS "C3'" "H3'" sing N N 169
UMS "O3'" "HO3'" sing N N 170
UMS "C2'" "SE2'" sing N N 171
UMS "C2'" "C1'" sing N N 172
UMS "C2'" "H2'" sing N N 173
UMS "SE2'" "CA'" sing N N 174
UMS "C1'" N1 sing N N 175
UMS "C1'" "H1'" sing N N 176
UMS "CA'" "HA'" sing N N 177
UMS "CA'" "HA'2" sing N N 178
UMS "CA'" "HA'3" sing N N 179
UMS N1 C2 sing N N 180
UMS N1 C6 sing N N 181
UMS C2 O2 doub N N 182
UMS C2 N3 sing N N 183
UMS N3 C4 sing N N 184
UMS N3 H3 sing N N 185
UMS C4 O4 doub N N 186
UMS C4 C5 sing N N 187
UMS C5 C6 doub N N 188
UMS C5 H5 sing N N 189
UMS C6 H6 sing N N 190
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
3BM0 'a-form double helix'
3BM0 'internal loop'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 8_666 -0.196 -0.057 -0.098 -15.388 -9.471 -1.833 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A UMS 2 1_555 A DA 7 8_666 -0.003 -0.050 0.035 -4.829 -10.909 4.146 2 A_UMS2:DA7_A A 2 ? A 7 ? 20 1
1 A DG 3 1_555 A DC 6 8_666 -0.292 -0.087 0.093 -3.885 -12.211 3.601 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1
1 A DG 1 1_555 A DC 8 1_555 -0.196 -0.057 -0.098 -15.388 -9.471 -1.833 4 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A UMS 2 1_555 A DA 7 1_555 -0.003 -0.050 0.035 -4.829 -10.909 4.146 5 A_UMS2:DA7_A A 2 ? A 7 ? 20 1
1 A DG 3 1_555 A DC 6 1_555 -0.292 -0.087 0.093 -3.885 -12.211 3.601 6 A_DG3:DC6_A A 3 ? A 6 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 8_666 A UMS 2 1_555 A DA 7 8_666 0.531 -0.958 3.071 0.070 12.283 31.272 -3.451 -0.911 2.528 21.763 -0.123
33.542 1 AA_DG1UMS2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A UMS 2 1_555 A DA 7 8_666 A DG 3 1_555 A DC 6 8_666 0.500 -1.476 3.029 0.065 16.112 28.634 -4.877 -0.878 1.945 29.786 -0.120
32.774 2 AA_UMS2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DG 1 1_555 A DC 8 1_555 A UMS 2 1_555 A DA 7 1_555 0.531 -0.958 3.071 0.070 12.283 31.272 -3.451 -0.911 2.528 21.763 -0.123
33.542 3 AA_DG1UMS2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A UMS 2 1_555 A DA 7 1_555 A DG 3 1_555 A DC 6 1_555 0.500 -1.476 3.029 0.065 16.113 28.634 -4.877 -0.878 1.945 29.786 -0.120
32.774 4 AA_UMS2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ?
#
_atom_sites.entry_id 3BM0
_atom_sites.fract_transf_matrix[1][1] 0.023760
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023760
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.042066
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
SE
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 28.298 22.918 22.978 1.00 30.20 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 28.212 24.343 22.951 1.00 29.61 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 29.332 24.933 22.128 1.00 28.90 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 30.560 24.760 22.885 1.00 29.58 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 29.582 24.184 20.820 1.00 29.87 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 29.043 24.776 19.645 1.00 28.95 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 31.088 24.245 20.632 1.00 29.58 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 31.665 24.541 21.999 1.00 28.30 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 32.105 23.214 22.441 1.00 29.89 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 31.397 22.246 23.126 1.00 29.66 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 32.061 21.127 23.275 1.00 30.07 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 33.287 21.376 22.663 1.00 29.60 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 34.452 20.518 22.490 1.00 27.57 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 34.603 19.349 22.856 1.00 29.19 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 35.480 21.183 21.818 1.00 30.78 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 35.415 22.489 21.365 1.00 31.51 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 36.526 22.977 20.763 1.00 32.55 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 34.346 23.273 21.500 1.00 30.21 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 33.335 22.659 22.158 1.00 28.97 ? 1 DG A C4 1
HETATM 20 P P . UMS A 1 2 ? 28.543 23.811 18.457 1.00 30.16 ? 2 UMS A P 1
HETATM 21 O OP1 . UMS A 1 2 ? 27.661 24.615 17.578 1.00 32.40 ? 2 UMS A OP1 1
HETATM 22 O OP2 . UMS A 1 2 ? 28.084 22.513 18.992 1.00 28.14 ? 2 UMS A OP2 1
HETATM 23 O "O5'" . UMS A 1 2 ? 29.854 23.514 17.609 1.00 31.11 ? 2 UMS A "O5'" 1
HETATM 24 C "C5'" . UMS A 1 2 ? 30.597 24.591 17.082 1.00 31.57 ? 2 UMS A "C5'" 1
HETATM 25 C "C4'" . UMS A 1 2 ? 31.939 24.130 16.571 1.00 33.52 ? 2 UMS A "C4'" 1
HETATM 26 O "O4'" . UMS A 1 2 ? 32.782 23.776 17.702 1.00 33.12 ? 2 UMS A "O4'" 1
HETATM 27 C "C3'" . UMS A 1 2 ? 31.921 22.857 15.736 1.00 34.66 ? 2 UMS A "C3'" 1
HETATM 28 O "O3'" . UMS A 1 2 ? 31.697 23.033 14.356 1.00 36.19 ? 2 UMS A "O3'" 1
HETATM 29 C "C2'" . UMS A 1 2 ? 33.348 22.353 15.887 1.00 34.34 ? 2 UMS A "C2'" 1
HETATM 30 SE "SE2'" . UMS A 1 2 ? 34.672 23.595 14.780 1.00 37.64 ? 2 UMS A "SE2'" 1
HETATM 31 C "C1'" . UMS A 1 2 ? 33.719 22.770 17.289 1.00 33.67 ? 2 UMS A "C1'" 1
HETATM 32 C "CA'" . UMS A 1 2 ? 36.362 22.790 15.358 1.00 37.53 ? 2 UMS A "CA'" 1
HETATM 33 N N1 . UMS A 1 2 ? 33.370 21.622 18.209 1.00 32.45 ? 2 UMS A N1 1
HETATM 34 C C2 . UMS A 1 2 ? 34.379 20.677 18.408 1.00 31.10 ? 2 UMS A C2 1
HETATM 35 O O2 . UMS A 1 2 ? 35.475 20.769 17.883 1.00 34.98 ? 2 UMS A O2 1
HETATM 36 N N3 . UMS A 1 2 ? 34.062 19.618 19.235 1.00 31.07 ? 2 UMS A N3 1
HETATM 37 C C4 . UMS A 1 2 ? 32.865 19.386 19.878 1.00 29.86 ? 2 UMS A C4 1
HETATM 38 O O4 . UMS A 1 2 ? 32.731 18.397 20.573 1.00 30.56 ? 2 UMS A O4 1
HETATM 39 C C5 . UMS A 1 2 ? 31.805 20.421 19.639 1.00 29.64 ? 2 UMS A C5 1
HETATM 40 C C6 . UMS A 1 2 ? 32.133 21.486 18.809 1.00 32.39 ? 2 UMS A C6 1
ATOM 41 P P . DG A 1 3 ? 30.869 21.891 13.563 1.00 39.06 ? 3 DG A P 1
ATOM 42 O OP1 . DG A 1 3 ? 30.398 22.503 12.306 1.00 37.25 ? 3 DG A OP1 1
ATOM 43 O OP2 . DG A 1 3 ? 29.897 21.244 14.503 1.00 39.39 ? 3 DG A OP2 1
ATOM 44 O "O5'" . DG A 1 3 ? 31.936 20.757 13.261 1.00 38.54 ? 3 DG A "O5'" 1
ATOM 45 C "C5'" . DG A 1 3 ? 33.131 21.081 12.608 1.00 38.69 ? 3 DG A "C5'" 1
ATOM 46 C "C4'" . DG A 1 3 ? 34.125 19.959 12.755 1.00 38.11 ? 3 DG A "C4'" 1
ATOM 47 O "O4'" . DG A 1 3 ? 34.403 19.760 14.167 1.00 37.76 ? 3 DG A "O4'" 1
ATOM 48 C "C3'" . DG A 1 3 ? 33.630 18.602 12.255 1.00 37.62 ? 3 DG A "C3'" 1
ATOM 49 O "O3'" . DG A 1 3 ? 34.237 18.207 11.038 1.00 35.86 ? 3 DG A "O3'" 1
ATOM 50 C "C2'" . DG A 1 3 ? 34.208 17.611 13.253 1.00 37.34 ? 3 DG A "C2'" 1
ATOM 51 C "C1'" . DG A 1 3 ? 34.899 18.439 14.323 1.00 36.34 ? 3 DG A "C1'" 1
ATOM 52 N N9 . DG A 1 3 ? 34.193 18.031 15.539 1.00 34.22 ? 3 DG A N9 1
ATOM 53 C C8 . DG A 1 3 ? 33.008 18.503 16.065 1.00 33.54 ? 3 DG A C8 1
ATOM 54 N N7 . DG A 1 3 ? 32.593 17.806 17.092 1.00 32.72 ? 3 DG A N7 1
ATOM 55 C C5 . DG A 1 3 ? 33.576 16.845 17.275 1.00 31.40 ? 3 DG A C5 1
ATOM 56 C C6 . DG A 1 3 ? 33.677 15.751 18.241 1.00 29.81 ? 3 DG A C6 1
ATOM 57 O O6 . DG A 1 3 ? 32.872 15.420 19.108 1.00 30.01 ? 3 DG A O6 1
ATOM 58 N N1 . DG A 1 3 ? 34.851 15.022 18.061 1.00 30.02 ? 3 DG A N1 1
ATOM 59 C C2 . DG A 1 3 ? 35.785 15.263 17.077 1.00 31.14 ? 3 DG A C2 1
ATOM 60 N N2 . DG A 1 3 ? 36.829 14.424 17.044 1.00 31.19 ? 3 DG A N2 1
ATOM 61 N N3 . DG A 1 3 ? 35.697 16.246 16.189 1.00 30.79 ? 3 DG A N3 1
ATOM 62 C C4 . DG A 1 3 ? 34.583 16.987 16.347 1.00 31.63 ? 3 DG A C4 1
HETATM 63 P P . T5S A 1 4 ? 33.712 16.885 10.297 1.00 36.60 ? 4 T5S A P 1
HETATM 64 O OP1 . T5S A 1 4 ? 34.179 17.003 8.883 1.00 36.09 ? 4 T5S A OP1 1
HETATM 65 O OP2 . T5S A 1 4 ? 32.288 16.654 10.574 1.00 32.20 ? 4 T5S A OP2 1
HETATM 66 O "O5'" . T5S A 1 4 ? 34.517 15.736 11.042 1.00 34.45 ? 4 T5S A "O5'" 1
HETATM 67 N N1 . T5S A 1 4 ? 34.928 13.162 14.236 1.00 30.90 ? 4 T5S A N1 1
HETATM 68 C C6 . T5S A 1 4 ? 34.010 14.180 14.023 1.00 31.59 ? 4 T5S A C6 1
HETATM 69 C C2 . T5S A 1 4 ? 34.791 12.282 15.304 1.00 29.43 ? 4 T5S A C2 1
HETATM 70 O O2 . T5S A 1 4 ? 35.604 11.416 15.548 1.00 27.89 ? 4 T5S A O2 1
HETATM 71 N N3 . T5S A 1 4 ? 33.654 12.457 16.082 1.00 30.23 ? 4 T5S A N3 1
HETATM 72 C C4 . T5S A 1 4 ? 32.654 13.415 15.915 1.00 29.74 ? 4 T5S A C4 1
HETATM 73 O O4 . T5S A 1 4 ? 31.672 13.451 16.662 1.00 25.79 ? 4 T5S A O4 1
HETATM 74 C C5 . T5S A 1 4 ? 32.867 14.348 14.796 1.00 28.44 ? 4 T5S A C5 1
HETATM 75 SE SE . T5S A 1 4 ? 31.533 15.697 14.482 1.00 34.72 ? 4 T5S A SE 1
HETATM 76 C CH3 . T5S A 1 4 ? 31.105 15.706 13.079 1.00 46.62 ? 4 T5S A CH3 1
HETATM 77 C "C2'" . T5S A 1 4 ? 35.373 12.278 12.088 1.00 34.62 ? 4 T5S A "C2'" 1
HETATM 78 C "C5'" . T5S A 1 4 ? 35.935 15.719 11.031 1.00 35.63 ? 4 T5S A "C5'" 1
HETATM 79 C "C4'" . T5S A 1 4 ? 36.432 14.356 11.445 1.00 34.73 ? 4 T5S A "C4'" 1
HETATM 80 O "O4'" . T5S A 1 4 ? 36.351 14.271 12.891 1.00 34.39 ? 4 T5S A "O4'" 1
HETATM 81 C "C1'" . T5S A 1 4 ? 36.059 12.926 13.276 1.00 32.69 ? 4 T5S A "C1'" 1
HETATM 82 C "C3'" . T5S A 1 4 ? 35.522 13.243 10.927 1.00 34.40 ? 4 T5S A "C3'" 1
HETATM 83 O "O3'" . T5S A 1 4 ? 36.048 12.474 9.867 1.00 34.05 ? 4 T5S A "O3'" 1
ATOM 84 P P . DA A 1 5 ? 35.098 11.398 9.147 1.00 34.27 ? 5 DA A P 1
ATOM 85 O OP1 . DA A 1 5 ? 35.546 11.312 7.724 1.00 35.44 ? 5 DA A OP1 1
ATOM 86 O OP2 . DA A 1 5 ? 33.675 11.678 9.446 1.00 35.26 ? 5 DA A OP2 1
ATOM 87 O "O5'" . DA A 1 5 ? 35.504 10.077 9.917 1.00 33.78 ? 5 DA A "O5'" 1
ATOM 88 C "C5'" . DA A 1 5 ? 34.535 9.146 10.343 1.00 33.50 ? 5 DA A "C5'" 1
ATOM 89 C "C4'" . DA A 1 5 ? 35.181 8.208 11.331 1.00 31.82 ? 5 DA A "C4'" 1
ATOM 90 O "O4'" . DA A 1 5 ? 35.343 8.956 12.567 1.00 30.95 ? 5 DA A "O4'" 1
ATOM 91 C "C3'" . DA A 1 5 ? 34.301 7.016 11.669 1.00 31.77 ? 5 DA A "C3'" 1
ATOM 92 O "O3'" . DA A 1 5 ? 34.746 5.808 11.064 1.00 32.84 ? 5 DA A "O3'" 1
ATOM 93 C "C2'" . DA A 1 5 ? 34.369 6.874 13.179 1.00 30.72 ? 5 DA A "C2'" 1
ATOM 94 C "C1'" . DA A 1 5 ? 34.790 8.249 13.675 1.00 29.88 ? 5 DA A "C1'" 1
ATOM 95 N N9 . DA A 1 5 ? 33.595 8.979 14.112 1.00 27.75 ? 5 DA A N9 1
ATOM 96 C C8 . DA A 1 5 ? 32.958 10.032 13.501 1.00 27.89 ? 5 DA A C8 1
ATOM 97 N N7 . DA A 1 5 ? 31.904 10.452 14.143 1.00 25.82 ? 5 DA A N7 1
ATOM 98 C C5 . DA A 1 5 ? 31.846 9.635 15.262 1.00 25.61 ? 5 DA A C5 1
ATOM 99 C C6 . DA A 1 5 ? 30.972 9.604 16.364 1.00 27.29 ? 5 DA A C6 1
ATOM 100 N N6 . DA A 1 5 ? 29.970 10.469 16.537 1.00 26.98 ? 5 DA A N6 1
ATOM 101 N N1 . DA A 1 5 ? 31.185 8.649 17.306 1.00 25.22 ? 5 DA A N1 1
ATOM 102 C C2 . DA A 1 5 ? 32.212 7.807 17.131 1.00 24.39 ? 5 DA A C2 1
ATOM 103 N N3 . DA A 1 5 ? 33.105 7.756 16.137 1.00 25.47 ? 5 DA A N3 1
ATOM 104 C C4 . DA A 1 5 ? 32.865 8.711 15.242 1.00 25.33 ? 5 DA A C4 1
ATOM 105 P P . DC A 1 6 ? 33.636 4.815 10.479 1.00 32.83 ? 6 DC A P 1
ATOM 106 O OP1 . DC A 1 6 ? 34.354 3.763 9.722 1.00 33.52 ? 6 DC A OP1 1
ATOM 107 O OP2 . DC A 1 6 ? 32.540 5.595 9.857 1.00 30.90 ? 6 DC A OP2 1
ATOM 108 O "O5'" . DC A 1 6 ? 33.037 4.172 11.792 1.00 29.94 ? 6 DC A "O5'" 1
ATOM 109 C "C5'" . DC A 1 6 ? 33.921 3.504 12.676 1.00 31.78 ? 6 DC A "C5'" 1
ATOM 110 C "C4'" . DC A 1 6 ? 33.189 3.006 13.895 1.00 31.54 ? 6 DC A "C4'" 1
ATOM 111 O "O4'" . DC A 1 6 ? 33.018 4.139 14.781 1.00 31.47 ? 6 DC A "O4'" 1
ATOM 112 C "C3'" . DC A 1 6 ? 31.783 2.500 13.617 1.00 32.03 ? 6 DC A "C3'" 1
ATOM 113 O "O3'" . DC A 1 6 ? 31.653 1.098 13.427 1.00 33.54 ? 6 DC A "O3'" 1
ATOM 114 C "C2'" . DC A 1 6 ? 31.005 2.869 14.868 1.00 31.05 ? 6 DC A "C2'" 1
ATOM 115 C "C1'" . DC A 1 6 ? 31.768 4.058 15.457 1.00 30.29 ? 6 DC A "C1'" 1
ATOM 116 N N1 . DC A 1 6 ? 30.958 5.247 15.094 1.00 28.47 ? 6 DC A N1 1
ATOM 117 C C2 . DC A 1 6 ? 29.943 5.661 15.987 1.00 26.89 ? 6 DC A C2 1
ATOM 118 O O2 . DC A 1 6 ? 29.805 5.043 17.063 1.00 26.63 ? 6 DC A O2 1
ATOM 119 N N3 . DC A 1 6 ? 29.142 6.697 15.663 1.00 26.02 ? 6 DC A N3 1
ATOM 120 C C4 . DC A 1 6 ? 29.300 7.352 14.509 1.00 27.09 ? 6 DC A C4 1
ATOM 121 N N4 . DC A 1 6 ? 28.470 8.383 14.268 1.00 27.65 ? 6 DC A N4 1
ATOM 122 C C5 . DC A 1 6 ? 30.320 6.986 13.562 1.00 25.62 ? 6 DC A C5 1
ATOM 123 C C6 . DC A 1 6 ? 31.142 5.919 13.902 1.00 28.11 ? 6 DC A C6 1
ATOM 124 P P . DA A 1 7 ? 30.402 0.559 12.559 1.00 35.50 ? 7 DA A P 1
ATOM 125 O OP1 . DA A 1 7 ? 30.728 -0.808 12.053 1.00 36.64 ? 7 DA A OP1 1
ATOM 126 O OP2 . DA A 1 7 ? 29.935 1.597 11.596 1.00 35.64 ? 7 DA A OP2 1
ATOM 127 O "O5'" . DA A 1 7 ? 29.273 0.441 13.660 1.00 33.18 ? 7 DA A "O5'" 1
ATOM 128 C "C5'" . DA A 1 7 ? 29.552 -0.201 14.891 1.00 33.31 ? 7 DA A "C5'" 1
ATOM 129 C "C4'" . DA A 1 7 ? 28.302 -0.263 15.730 1.00 32.74 ? 7 DA A "C4'" 1
ATOM 130 O "O4'" . DA A 1 7 ? 28.136 1.022 16.360 1.00 31.76 ? 7 DA A "O4'" 1
ATOM 131 C "C3'" . DA A 1 7 ? 27.049 -0.489 14.897 1.00 33.56 ? 7 DA A "C3'" 1
ATOM 132 O "O3'" . DA A 1 7 ? 26.526 -1.789 15.014 1.00 37.04 ? 7 DA A "O3'" 1
ATOM 133 C "C2'" . DA A 1 7 ? 26.004 0.447 15.483 1.00 32.34 ? 7 DA A "C2'" 1
ATOM 134 C "C1'" . DA A 1 7 ? 26.780 1.443 16.332 1.00 30.77 ? 7 DA A "C1'" 1
ATOM 135 N N9 . DA A 1 7 ? 26.741 2.741 15.655 1.00 28.14 ? 7 DA A N9 1
ATOM 136 C C8 . DA A 1 7 ? 27.509 3.202 14.608 1.00 29.36 ? 7 DA A C8 1
ATOM 137 N N7 . DA A 1 7 ? 27.168 4.401 14.196 1.00 26.77 ? 7 DA A N7 1
ATOM 138 C C5 . DA A 1 7 ? 26.133 4.763 15.047 1.00 25.79 ? 7 DA A C5 1
ATOM 139 C C6 . DA A 1 7 ? 25.352 5.938 15.153 1.00 26.96 ? 7 DA A C6 1
ATOM 140 N N6 . DA A 1 7 ? 25.517 7.020 14.381 1.00 26.08 ? 7 DA A N6 1
ATOM 141 N N1 . DA A 1 7 ? 24.384 5.961 16.093 1.00 25.51 ? 7 DA A N1 1
ATOM 142 C C2 . DA A 1 7 ? 24.233 4.886 16.881 1.00 29.30 ? 7 DA A C2 1
ATOM 143 N N3 . DA A 1 7 ? 24.917 3.739 16.891 1.00 28.22 ? 7 DA A N3 1
ATOM 144 C C4 . DA A 1 7 ? 25.858 3.746 15.940 1.00 26.73 ? 7 DA A C4 1
ATOM 145 P P . DC A 1 8 ? 25.550 -2.333 13.861 1.00 39.20 ? 8 DC A P 1
ATOM 146 O OP1 . DC A 1 8 ? 25.577 -3.806 14.066 1.00 40.30 ? 8 DC A OP1 1
ATOM 147 O OP2 . DC A 1 8 ? 25.901 -1.771 12.516 1.00 40.03 ? 8 DC A OP2 1
ATOM 148 O "O5'" . DC A 1 8 ? 24.118 -1.753 14.276 1.00 37.21 ? 8 DC A "O5'" 1
ATOM 149 C "C5'" . DC A 1 8 ? 23.480 -2.219 15.471 1.00 37.48 ? 8 DC A "C5'" 1
ATOM 150 C "C4'" . DC A 1 8 ? 22.140 -1.550 15.677 1.00 36.90 ? 8 DC A "C4'" 1
ATOM 151 O "O4'" . DC A 1 8 ? 22.325 -0.119 15.799 1.00 35.77 ? 8 DC A "O4'" 1
ATOM 152 C "C3'" . DC A 1 8 ? 21.106 -1.757 14.564 1.00 37.30 ? 8 DC A "C3'" 1
ATOM 153 O "O3'" . DC A 1 8 ? 19.790 -1.717 15.100 1.00 39.47 ? 8 DC A "O3'" 1
ATOM 154 C "C2'" . DC A 1 8 ? 21.193 -0.469 13.772 1.00 36.47 ? 8 DC A "C2'" 1
ATOM 155 C "C1'" . DC A 1 8 ? 21.496 0.546 14.864 1.00 35.79 ? 8 DC A "C1'" 1
ATOM 156 N N1 . DC A 1 8 ? 22.243 1.683 14.294 1.00 34.65 ? 8 DC A N1 1
ATOM 157 C C2 . DC A 1 8 ? 21.719 2.989 14.458 1.00 34.91 ? 8 DC A C2 1
ATOM 158 O O2 . DC A 1 8 ? 20.727 3.151 15.179 1.00 34.72 ? 8 DC A O2 1
ATOM 159 N N3 . DC A 1 8 ? 22.314 4.033 13.838 1.00 33.84 ? 8 DC A N3 1
ATOM 160 C C4 . DC A 1 8 ? 23.413 3.841 13.088 1.00 35.09 ? 8 DC A C4 1
ATOM 161 N N4 . DC A 1 8 ? 23.927 4.901 12.437 1.00 32.54 ? 8 DC A N4 1
ATOM 162 C C5 . DC A 1 8 ? 24.021 2.556 12.955 1.00 34.69 ? 8 DC A C5 1
ATOM 163 C C6 . DC A 1 8 ? 23.396 1.491 13.586 1.00 34.58 ? 8 DC A C6 1
HETATM 164 O O . HOH B 2 . ? 31.144 16.519 20.366 1.00 31.66 ? 9 HOH A O 1
HETATM 165 O O . HOH B 2 . ? 30.073 17.519 18.369 1.00 32.71 ? 10 HOH A O 1
HETATM 166 O O . HOH B 2 . ? 23.549 1.651 18.172 1.00 42.07 ? 11 HOH A O 1
HETATM 167 O O . HOH B 2 . ? 27.764 22.384 25.466 1.00 36.09 ? 12 HOH A O 1
HETATM 168 O O . HOH B 2 . ? 35.526 6.179 16.563 1.00 23.83 ? 13 HOH A O 1
HETATM 169 O O . HOH B 2 . ? 25.086 26.562 21.006 1.00 34.12 ? 14 HOH A O 1
HETATM 170 O O . HOH B 2 . ? 29.831 14.137 20.591 1.00 39.66 ? 15 HOH A O 1
HETATM 171 O O . HOH B 2 . ? 37.730 16.969 14.645 1.00 50.47 ? 16 HOH A O 1
HETATM 172 O O . HOH B 2 . ? 39.265 20.607 13.279 1.00 46.22 ? 17 HOH A O 1
HETATM 173 O O . HOH B 2 . ? 25.364 25.629 18.616 1.00 40.09 ? 18 HOH A O 1
HETATM 174 O O . HOH B 2 . ? 20.534 3.774 17.874 1.00 42.04 ? 19 HOH A O 1
HETATM 175 O O . HOH B 2 . ? 29.868 18.181 21.851 1.00 43.47 ? 20 HOH A O 1
HETATM 176 O O . HOH B 2 . ? 29.540 10.906 12.802 1.00 44.80 ? 21 HOH A O 1
HETATM 177 O O . HOH B 2 . ? 30.677 19.004 24.115 1.00 44.01 ? 22 HOH A O 1
HETATM 178 O O . HOH B 2 . ? 25.308 -4.909 16.458 1.00 37.60 ? 23 HOH A O 1
HETATM 179 O O . HOH B 2 . ? 27.633 5.497 11.787 1.00 38.59 ? 24 HOH A O 1
HETATM 180 O O . HOH B 2 . ? 27.218 24.988 15.160 1.00 49.28 ? 25 HOH A O 1
HETATM 181 O O . HOH B 2 . ? 34.837 18.671 6.715 1.00 46.01 ? 26 HOH A O 1
HETATM 182 O O . HOH B 2 . ? 32.416 15.997 22.487 1.00 54.10 ? 27 HOH A O 1
HETATM 183 O O . HOH B 2 . ? 25.991 -0.113 10.492 1.00 48.51 ? 28 HOH A O 1
HETATM 184 O O . HOH B 2 . ? 32.957 17.699 24.176 1.00 41.17 ? 29 HOH A O 1
HETATM 185 O O . HOH B 2 . ? 29.380 14.900 17.450 1.00 37.45 ? 30 HOH A O 1
HETATM 186 O O . HOH B 2 . ? 34.529 16.447 25.836 1.00 51.03 ? 31 HOH A O 1
HETATM 187 O O . HOH B 2 . ? 38.806 19.564 15.412 1.00 51.35 ? 32 HOH A O 1
HETATM 188 O O . HOH B 2 . ? 35.220 19.396 8.932 1.00 56.05 ? 33 HOH A O 1
HETATM 189 O O . HOH B 2 . ? 27.232 2.139 10.976 1.00 55.45 ? 34 HOH A O 1
HETATM 190 O O . HOH B 2 . ? 18.579 -3.951 14.026 1.00 53.18 ? 35 HOH A O 1
HETATM 191 O O . HOH B 2 . ? 26.716 22.376 15.249 1.00 62.30 ? 36 HOH A O 1
#