HEADER DNA 05-MAR-98 385D
TITLE FORMATION OF A NEW COMPOUND IN THE CRYSTAL STRUCTURE OF
TITLE 2 CYANOMORPHOLINODOXORUBICIN COMPLEXED WITH D(CGATCG)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3');
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES
KEYWDS RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA
EXPDTA X-RAY DIFFRACTION
AUTHOR A.ETTORRE,M.CIRILLI,G.UGHETTO
REVDAT 4 21-FEB-24 385D 1 REMARK
REVDAT 3 24-FEB-09 385D 1 VERSN
REVDAT 2 20-JAN-99 385D 2 REMARK CONECT
REVDAT 1 30-OCT-98 385D 0
JRNL AUTH A.ETTORRE,M.CIRILLI,G.UGHETTO
JRNL TITL DEGRADATION OF THE MORPHOLINO RING IN THE CRYSTAL STRUCTURE
JRNL TITL 2 OF CYANOMORPHOLINODOXORUBICIN COMPLEXED WITH D(CGATCG).
JRNL REF EUR.J.BIOCHEM. V. 258 350 1998
JRNL REFN ISSN 0014-2956
JRNL PMID 9874199
JRNL DOI 10.1046/J.1432-1327.1998.2580350.X
REMARK 2
REMARK 2 RESOLUTION. 1.60 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : NUCLSQ
REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000
REMARK 3 COMPLETENESS FOR RANGE (%) : NULL
REMARK 3 NUMBER OF REFLECTIONS : 1212
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : NULL
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.207
REMARK 3 R VALUE (WORKING SET) : NULL
REMARK 3 FREE R VALUE : 0.217
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000
REMARK 3 FREE R VALUE TEST SET COUNT : NULL
REMARK 3
REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA.
REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL
REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL
REMARK 3 FREE R VALUE (NO CUTOFF) : NULL
REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL
REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 3509
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 0
REMARK 3 NUCLEIC ACID ATOMS : 120
REMARK 3 HETEROGEN ATOMS : 42
REMARK 3 SOLVENT ATOMS : 27
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 9.18
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM SIGMAA (A) : NULL
REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA
REMARK 3 SUGAR-BASE BOND DISTANCE (A) : NULL ; NULL
REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : NULL ; NULL
REMARK 3 PHOSPHATE BONDS DISTANCE (A) : NULL ; NULL
REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : NULL ; NULL
REMARK 3
REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL
REMARK 3
REMARK 3 NON-BONDED CONTACT RESTRAINTS.
REMARK 3 SINGLE TORSION CONTACT (A) : NULL ; NULL
REMARK 3 MULTIPLE TORSION CONTACT (A) : NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 SUGAR-BASE BONDS (A**2) : NULL ; NULL
REMARK 3 SUGAR-BASE ANGLES (A**2) : NULL ; NULL
REMARK 3 PHOSPHATE BONDS (A**2) : NULL ; NULL
REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : NULL ; NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 385D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB.
REMARK 100 THE DEPOSITION ID IS D_1000178850.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : OCT-95
REMARK 200 TEMPERATURE (KELVIN) : 298.00
REMARK 200 PH : 5.50
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : NULL
REMARK 200 MONOCHROMATOR : GRAPHITE
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : DIFFRACTOMETER
REMARK 200 DETECTOR MANUFACTURER : RIGAKU AFC-5R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TEXSAN, TEXRAY
REMARK 200 DATA SCALING SOFTWARE : NULL
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3509
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600
REMARK 200 RESOLUTION RANGE LOW (A) : 8.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : NULL
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : 0.12100
REMARK 200 R SYM (I) : NULL
REMARK 200 FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: NULL
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 57.99
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.50, VAPOR DIFFUSION, SITTING DROP
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.78000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 14.06500
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 14.06500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.39000
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 14.06500
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 14.06500
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.17000
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 14.06500
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 14.06500
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.39000
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 14.06500
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 14.06500
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.17000
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.78000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 28.13000
REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 28.13000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.78000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O6 DG A 6 O HOH A 9 8665 2.07
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 DG A 2 C2' DG A 2 C1' 0.098
REMARK 500 DG A 2 C6 DG A 2 N1 -0.074
REMARK 500 DG A 2 C2 DG A 2 N2 -0.127
REMARK 500 DA A 3 C2' DA A 3 C1' 0.065
REMARK 500 DA A 3 O3' DA A 3 C3' -0.037
REMARK 500 DT A 4 O3' DT A 4 C3' -0.039
REMARK 500 DC A 5 P DC A 5 O5' 0.064
REMARK 500 DC A 5 C2' DC A 5 C1' 0.089
REMARK 500 DC A 5 N3 DC A 5 C4 0.051
REMARK 500 DG A 6 C6 DG A 6 N1 -0.064
REMARK 500 DG A 6 C2 DG A 6 N2 -0.116
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 DC A 1 O5' - C5' - C4' ANGL. DEV. = -5.8 DEGREES
REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = -6.2 DEGREES
REMARK 500 DC A 1 C2 - N3 - C4 ANGL. DEV. = 4.7 DEGREES
REMARK 500 DC A 1 N3 - C4 - C5 ANGL. DEV. = -4.7 DEGREES
REMARK 500 DC A 1 N1 - C2 - O2 ANGL. DEV. = 4.2 DEGREES
REMARK 500 DG A 2 O5' - P - OP2 ANGL. DEV. = -10.0 DEGREES
REMARK 500 DG A 2 O5' - C5' - C4' ANGL. DEV. = -8.1 DEGREES
REMARK 500 DG A 2 C3' - C2' - C1' ANGL. DEV. = -7.9 DEGREES
REMARK 500 DG A 2 O4' - C1' - C2' ANGL. DEV. = -5.1 DEGREES
REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 8.8 DEGREES
REMARK 500 DG A 2 C6 - N1 - C2 ANGL. DEV. = -3.9 DEGREES
REMARK 500 DG A 2 N1 - C2 - N3 ANGL. DEV. = 4.5 DEGREES
REMARK 500 DG A 2 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES
REMARK 500 DG A 2 C5 - C6 - N1 ANGL. DEV. = 4.8 DEGREES
REMARK 500 DG A 2 N1 - C2 - N2 ANGL. DEV. = 5.6 DEGREES
REMARK 500 DG A 2 N3 - C2 - N2 ANGL. DEV. = -10.1 DEGREES
REMARK 500 DG A 2 C5 - C6 - O6 ANGL. DEV. = -3.9 DEGREES
REMARK 500 DG A 2 C3' - O3' - P ANGL. DEV. = 9.9 DEGREES
REMARK 500 DA A 3 OP1 - P - OP2 ANGL. DEV. = 9.3 DEGREES
REMARK 500 DA A 3 O5' - P - OP1 ANGL. DEV. = -8.5 DEGREES
REMARK 500 DA A 3 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES
REMARK 500 DT A 4 O5' - P - OP1 ANGL. DEV. = -10.2 DEGREES
REMARK 500 DT A 4 O5' - C5' - C4' ANGL. DEV. = -9.3 DEGREES
REMARK 500 DC A 5 O5' - P - OP1 ANGL. DEV. = -8.0 DEGREES
REMARK 500 DC A 5 O5' - C5' - C4' ANGL. DEV. = -7.5 DEGREES
REMARK 500 DC A 5 C3' - C2' - C1' ANGL. DEV. = -7.9 DEGREES
REMARK 500 DC A 5 O4' - C1' - C2' ANGL. DEV. = -6.3 DEGREES
REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = 10.9 DEGREES
REMARK 500 DC A 5 C2 - N3 - C4 ANGL. DEV. = 4.8 DEGREES
REMARK 500 DC A 5 N3 - C4 - C5 ANGL. DEV. = -5.0 DEGREES
REMARK 500 DG A 6 O5' - P - OP1 ANGL. DEV. = -8.9 DEGREES
REMARK 500 DG A 6 O5' - C5' - C4' ANGL. DEV. = -8.8 DEGREES
REMARK 500 DG A 6 P - O5' - C5' ANGL. DEV. = -16.9 DEGREES
REMARK 500 DG A 6 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES
REMARK 500 DG A 6 C6 - N1 - C2 ANGL. DEV. = -5.4 DEGREES
REMARK 500 DG A 6 N1 - C2 - N3 ANGL. DEV. = 5.9 DEGREES
REMARK 500 DG A 6 C2 - N3 - C4 ANGL. DEV. = -3.3 DEGREES
REMARK 500 DG A 6 C5 - C6 - N1 ANGL. DEV. = 5.5 DEGREES
REMARK 500 DG A 6 N3 - C2 - N2 ANGL. DEV. = -10.3 DEGREES
REMARK 500 DG A 6 C5 - C6 - O6 ANGL. DEV. = -4.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NOD A 7
DBREF 385D A 1 6 PDB 385D 385D 1 6
SEQRES 1 A 6 DC DG DA DT DC DG
HET NOD A 7 42
HETNAM NOD N-ETHYLHYDROXY-DOXORUBICIN
FORMUL 2 NOD C29 H33 N O12
FORMUL 3 HOH *27(H2 O)
SITE 1 AC1 10 DC A 1 DG A 2 DA A 3 DT A 4
SITE 2 AC1 10 DC A 5 DG A 6 HOH A 13 HOH A 15
SITE 3 AC1 10 HOH A 21 HOH A 23
CRYST1 28.130 28.130 53.560 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.035549 0.000000 0.000000 0.00000
SCALE2 0.000000 0.035549 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018671 0.00000
ATOM 1 O5' DC A 1 9.635 20.818 22.941 1.00 12.61 O
ATOM 2 C5' DC A 1 9.868 21.112 24.303 1.00 13.01 C
ATOM 3 C4' DC A 1 11.403 20.988 24.445 1.00 13.21 C
ATOM 4 O4' DC A 1 11.647 19.754 25.173 1.00 12.96 O
ATOM 5 C3' DC A 1 12.286 20.915 23.168 1.00 13.68 C
ATOM 6 O3' DC A 1 13.305 21.877 23.258 1.00 14.86 O
ATOM 7 C2' DC A 1 12.859 19.518 23.141 1.00 13.12 C
ATOM 8 C1' DC A 1 12.674 19.003 24.606 1.00 12.48 C
ATOM 9 N1 DC A 1 12.127 17.608 24.707 1.00 11.83 N
ATOM 10 C2 DC A 1 13.061 16.638 24.928 1.00 11.65 C
ATOM 11 O2 DC A 1 14.247 16.871 25.036 1.00 11.56 O
ATOM 12 N3 DC A 1 12.596 15.356 25.004 1.00 11.47 N
ATOM 13 C4 DC A 1 11.278 15.001 24.903 1.00 11.41 C
ATOM 14 N4 DC A 1 10.944 13.677 25.010 1.00 11.57 N
ATOM 15 C5 DC A 1 10.340 16.042 24.669 1.00 11.95 C
ATOM 16 C6 DC A 1 10.791 17.305 24.588 1.00 11.72 C
ATOM 17 P DG A 2 13.776 22.788 22.051 1.00 15.83 P
ATOM 18 OP1 DG A 2 14.462 23.938 22.666 1.00 15.92 O
ATOM 19 OP2 DG A 2 12.684 22.984 21.167 1.00 15.97 O
ATOM 20 O5' DG A 2 14.696 21.937 20.986 1.00 15.15 O
ATOM 21 C5' DG A 2 15.751 21.184 21.561 1.00 14.23 C
ATOM 22 C4' DG A 2 16.342 20.505 20.324 1.00 13.64 C
ATOM 23 O4' DG A 2 15.677 19.213 20.256 1.00 12.92 O
ATOM 24 C3' DG A 2 16.124 21.170 18.918 1.00 13.73 C
ATOM 25 O3' DG A 2 17.093 20.788 18.000 1.00 15.10 O
ATOM 26 C2' DG A 2 14.772 20.560 18.571 1.00 13.13 C
ATOM 27 C1' DG A 2 15.221 19.048 18.928 1.00 12.01 C
ATOM 28 N9 DG A 2 14.097 18.235 18.737 1.00 11.54 N
ATOM 29 C8 DG A 2 12.819 18.626 18.621 1.00 11.03 C
ATOM 30 N7 DG A 2 11.958 17.619 18.435 1.00 10.95 N
ATOM 31 C5 DG A 2 12.767 16.516 18.437 1.00 10.72 C
ATOM 32 C6 DG A 2 12.467 15.130 18.279 1.00 10.37 C
ATOM 33 O6 DG A 2 11.306 14.660 18.110 1.00 10.35 O
ATOM 34 N1 DG A 2 13.488 14.301 18.339 1.00 10.13 N
ATOM 35 C2 DG A 2 14.732 14.749 18.522 1.00 9.92 C
ATOM 36 N2 DG A 2 15.682 13.995 18.576 1.00 9.43 N
ATOM 37 N3 DG A 2 15.150 16.024 18.673 1.00 10.50 N
ATOM 38 C4 DG A 2 14.083 16.839 18.620 1.00 10.71 C
ATOM 39 P DA A 3 18.201 21.669 17.263 1.00 16.10 P
ATOM 40 OP1 DA A 3 18.885 22.272 18.345 1.00 15.94 O
ATOM 41 OP2 DA A 3 17.511 22.308 16.142 1.00 16.20 O
ATOM 42 O5' DA A 3 19.474 20.806 16.668 1.00 15.88 O
ATOM 43 C5' DA A 3 20.251 20.064 17.560 1.00 15.35 C
ATOM 44 C4' DA A 3 20.456 18.668 16.930 1.00 14.83 C
ATOM 45 O4' DA A 3 19.220 18.025 17.110 1.00 14.08 O
ATOM 46 C3' DA A 3 20.697 18.673 15.402 1.00 15.18 C
ATOM 47 O3' DA A 3 22.015 18.320 15.180 1.00 16.34 O
ATOM 48 C2' DA A 3 19.735 17.685 14.803 1.00 14.57 C
ATOM 49 C1' DA A 3 18.930 17.124 16.046 1.00 13.72 C
ATOM 50 N9 DA A 3 17.533 17.052 15.788 1.00 12.94 N
ATOM 51 C8 DA A 3 16.657 18.054 15.790 1.00 12.85 C
ATOM 52 N7 DA A 3 15.407 17.691 15.552 1.00 12.76 N
ATOM 53 C5 DA A 3 15.513 16.339 15.386 1.00 12.71 C
ATOM 54 C6 DA A 3 14.521 15.344 15.110 1.00 12.64 C
ATOM 55 N6 DA A 3 13.218 15.667 14.915 1.00 12.66 N
ATOM 56 N1 DA A 3 14.933 14.075 15.051 1.00 12.42 N
ATOM 57 C2 DA A 3 16.224 13.794 15.203 1.00 12.07 C
ATOM 58 N3 DA A 3 17.231 14.634 15.453 1.00 12.55 N
ATOM 59 C4 DA A 3 16.794 15.897 15.542 1.00 12.72 C
ATOM 60 P DT A 4 22.665 18.048 13.752 1.00 16.49 P
ATOM 61 OP1 DT A 4 24.005 17.696 14.103 1.00 16.34 O
ATOM 62 OP2 DT A 4 22.277 19.145 12.866 1.00 16.46 O
ATOM 63 O5' DT A 4 22.260 16.574 13.183 1.00 16.43 O
ATOM 64 C5' DT A 4 22.809 15.410 13.801 1.00 15.92 C
ATOM 65 C4' DT A 4 22.112 14.311 12.972 1.00 15.61 C
ATOM 66 O4' DT A 4 20.684 14.374 13.158 1.00 15.60 O
ATOM 67 C3' DT A 4 22.349 14.429 11.414 1.00 15.64 C
ATOM 68 O3' DT A 4 22.993 13.241 11.132 1.00 15.79 O
ATOM 69 C2' DT A 4 20.999 14.693 10.811 1.00 15.14 C
ATOM 70 C1' DT A 4 20.037 14.170 11.907 1.00 14.72 C
ATOM 71 N1 DT A 4 18.696 14.860 11.921 1.00 14.35 N
ATOM 72 C2 DT A 4 17.646 14.001 11.948 1.00 14.28 C
ATOM 73 O2 DT A 4 17.747 12.786 11.965 1.00 14.46 O
ATOM 74 N3 DT A 4 16.401 14.574 11.944 1.00 14.19 N
ATOM 75 C4 DT A 4 16.172 15.935 11.917 1.00 14.18 C
ATOM 76 O4 DT A 4 14.974 16.309 11.937 1.00 14.03 O
ATOM 77 C5 DT A 4 17.304 16.789 11.893 1.00 14.35 C
ATOM 78 C7 DT A 4 17.181 18.283 11.880 1.00 14.09 C
ATOM 79 C6 DT A 4 18.511 16.219 11.880 1.00 14.29 C
ATOM 80 P DC A 5 23.941 12.973 9.895 1.00 16.17 P
ATOM 81 OP1 DC A 5 24.466 11.691 10.191 1.00 16.07 O
ATOM 82 OP2 DC A 5 24.691 14.185 9.570 1.00 16.05 O
ATOM 83 O5' DC A 5 22.953 12.525 8.642 1.00 15.98 O
ATOM 84 C5' DC A 5 22.526 11.163 8.767 1.00 15.42 C
ATOM 85 C4' DC A 5 21.251 11.162 7.960 1.00 14.91 C
ATOM 86 O4' DC A 5 20.208 12.000 8.600 1.00 14.73 O
ATOM 87 C3' DC A 5 21.333 11.723 6.526 1.00 14.99 C
ATOM 88 O3' DC A 5 20.503 10.871 5.779 1.00 15.39 O
ATOM 89 C2' DC A 5 20.692 13.097 6.649 1.00 14.68 C
ATOM 90 C1' DC A 5 19.483 12.590 7.580 1.00 14.04 C
ATOM 91 N1 DC A 5 18.650 13.790 7.880 1.00 13.80 N
ATOM 92 C2 DC A 5 17.303 13.613 8.003 1.00 13.64 C
ATOM 93 O2 DC A 5 16.782 12.511 7.908 1.00 13.39 O
ATOM 94 N3 DC A 5 16.568 14.740 8.245 1.00 13.61 N
ATOM 95 C4 DC A 5 17.096 16.016 8.366 1.00 13.71 C
ATOM 96 N4 DC A 5 16.291 17.104 8.585 1.00 13.87 N
ATOM 97 C5 DC A 5 18.499 16.147 8.218 1.00 13.66 C
ATOM 98 C6 DC A 5 19.207 15.046 7.981 1.00 13.67 C
ATOM 99 P DG A 6 21.204 9.941 4.716 1.00 15.37 P
ATOM 100 OP1 DG A 6 22.060 9.134 5.485 1.00 15.93 O
ATOM 101 OP2 DG A 6 21.645 10.874 3.659 1.00 15.36 O
ATOM 102 O5' DG A 6 20.214 8.741 4.207 1.00 14.86 O
ATOM 103 C5' DG A 6 18.870 9.343 4.256 1.00 14.11 C
ATOM 104 C4' DG A 6 18.078 8.320 3.478 1.00 13.42 C
ATOM 105 O4' DG A 6 16.993 8.896 2.777 1.00 12.92 O
ATOM 106 C3' DG A 6 18.882 7.622 2.305 1.00 13.34 C
ATOM 107 O3' DG A 6 18.156 6.428 2.108 1.00 13.92 O
ATOM 108 C2' DG A 6 18.846 8.675 1.231 1.00 12.38 C
ATOM 109 C1' DG A 6 17.438 9.287 1.483 1.00 11.84 C
ATOM 110 N9 DG A 6 17.487 10.689 1.532 1.00 11.26 N
ATOM 111 C8 DG A 6 18.580 11.473 1.517 1.00 11.01 C
ATOM 112 N7 DG A 6 18.299 12.762 1.513 1.00 10.85 N
ATOM 113 C5 DG A 6 16.937 12.795 1.496 1.00 10.79 C
ATOM 114 C6 DG A 6 16.020 13.890 1.497 1.00 10.70 C
ATOM 115 O6 DG A 6 16.376 15.100 1.491 1.00 10.67 O
ATOM 116 N1 DG A 6 14.727 13.592 1.469 1.00 10.39 N
ATOM 117 C2 DG A 6 14.344 12.318 1.471 1.00 10.16 C
ATOM 118 N2 DG A 6 13.155 12.023 1.455 1.00 10.02 N
ATOM 119 N3 DG A 6 15.084 11.199 1.481 1.00 10.62 N
ATOM 120 C4 DG A 6 16.390 11.547 1.510 1.00 10.93 C
TER 121 DG A 6
HETATM 122 C1 NOD A 7 15.474 18.291 5.124 1.00 8.74 C
HETATM 123 C2 NOD A 7 16.670 19.011 5.107 1.00 8.92 C
HETATM 124 C3 NOD A 7 17.872 18.280 4.997 1.00 9.37 C
HETATM 125 C4 NOD A 7 17.829 16.891 4.906 1.00 9.10 C
HETATM 126 O4 NOD A 7 19.025 16.164 4.808 1.00 9.66 O
HETATM 127 C5 NOD A 7 16.637 16.170 4.943 1.00 8.47 C
HETATM 128 C6 NOD A 7 16.587 14.785 4.866 1.00 8.12 C
HETATM 129 O6 NOD A 7 17.735 13.988 4.742 1.00 7.26 O
HETATM 130 C7 NOD A 7 15.365 14.135 4.920 1.00 7.67 C
HETATM 131 C8 NOD A 7 15.328 12.747 4.811 1.00 8.14 C
HETATM 132 O8 NOD A 7 16.529 12.040 4.723 1.00 7.76 O
HETATM 133 C9 NOD A 7 14.087 12.107 4.817 1.00 8.34 C
HETATM 134 C10 NOD A 7 14.135 10.613 4.745 1.00 8.68 C
HETATM 135 O10 NOD A 7 14.995 10.210 5.774 1.00 9.03 O
HETATM 136 C11 NOD A 7 12.779 9.884 4.608 1.00 9.09 C
HETATM 137 C12 NOD A 7 11.709 10.633 5.467 1.00 9.22 C
HETATM 138 O12 NOD A 7 11.976 10.602 6.846 1.00 9.57 O
HETATM 139 C13 NOD A 7 10.312 10.089 5.146 1.00 9.80 C
HETATM 140 O13 NOD A 7 9.777 10.410 3.911 1.00 9.82 O
HETATM 141 C14 NOD A 7 9.593 9.307 6.166 1.00 10.28 C
HETATM 142 O14 NOD A 7 9.229 8.024 5.628 1.00 10.98 O
HETATM 143 C15 NOD A 7 11.601 12.108 4.982 1.00 8.89 C
HETATM 144 C16 NOD A 7 12.900 12.819 4.963 1.00 8.32 C
HETATM 145 C17 NOD A 7 12.958 14.207 5.018 1.00 7.81 C
HETATM 146 O17 NOD A 7 11.834 15.005 5.146 1.00 6.96 O
HETATM 147 C18 NOD A 7 14.187 14.864 5.001 1.00 7.83 C
HETATM 148 C19 NOD A 7 14.208 16.258 5.073 1.00 8.37 C
HETATM 149 O19 NOD A 7 13.100 17.001 5.188 1.00 8.64 O
HETATM 150 C20 NOD A 7 15.453 16.897 5.063 1.00 8.42 C
HETATM 151 C21 NOD A 7 20.246 16.928 5.165 1.00 9.61 C
HETATM 152 C1' NOD A 7 15.662 8.979 5.873 1.00 10.17 C
HETATM 153 C2' NOD A 7 16.871 8.986 6.829 1.00 10.54 C
HETATM 154 C3' NOD A 7 16.431 8.742 8.255 1.00 11.23 C
HETATM 155 C4' NOD A 7 15.327 7.720 8.526 1.00 10.87 C
HETATM 156 O4' NOD A 7 15.789 6.340 8.237 1.00 10.63 O
HETATM 157 C5' NOD A 7 14.179 7.946 7.485 1.00 10.59 C
HETATM 158 O5' NOD A 7 14.799 7.852 6.142 1.00 10.20 O
HETATM 159 C6' NOD A 7 13.165 6.806 7.495 1.00 10.95 C
HETATM 160 N3' NOD A 7 16.953 9.703 9.217 1.00 11.69 N
HETATM 161 O16 NOD A 7 16.802 7.206 12.138 1.00 13.80 O
HETATM 162 C63 NOD A 7 16.167 8.166 11.173 1.00 13.13 C
HETATM 163 C53 NOD A 7 17.075 9.288 10.623 1.00 12.57 C
HETATM 164 O HOH A 8 22.496 15.522 7.732 1.00 15.89 O
HETATM 165 O HOH A 9 11.579 10.275 25.377 1.00 19.48 O
HETATM 166 O HOH A 10 25.077 9.918 6.047 1.00 20.15 O
HETATM 167 O HOH A 11 23.594 5.669 4.619 1.00 23.02 O
HETATM 168 O HOH A 12 13.928 8.589 1.558 1.00 23.07 O
HETATM 169 O HOH A 13 20.053 14.505 2.443 1.00 24.27 O
HETATM 170 O HOH A 14 9.767 14.109 15.077 1.00 24.93 O
HETATM 171 O HOH A 15 16.298 18.947 24.705 1.00 25.59 O
HETATM 172 O HOH A 16 9.397 21.746 19.919 1.00 26.16 O
HETATM 173 O HOH A 17 18.346 8.064 14.908 1.00 27.83 O
HETATM 174 O HOH A 18 13.462 19.360 14.920 1.00 30.41 O
HETATM 175 O HOH A 19 9.752 17.255 16.146 1.00 33.01 O
HETATM 176 O HOH A 20 22.328 10.679 0.975 1.00 36.59 O
HETATM 177 O HOH A 21 19.256 7.656 8.664 1.00 37.07 O
HETATM 178 O HOH A 22 11.092 17.802 14.373 1.00 38.02 O
HETATM 179 O HOH A 23 18.242 5.349 6.662 1.00 40.35 O
HETATM 180 O HOH A 24 23.026 7.431 0.620 1.00 41.33 O
HETATM 181 O HOH A 25 24.944 13.699 16.230 1.00 43.89 O
HETATM 182 O HOH A 26 4.895 14.622 10.429 1.00 44.43 O
HETATM 183 O HOH A 27 17.047 2.177 8.193 1.00 44.75 O
HETATM 184 O HOH A 28 14.512 21.450 26.283 1.00 45.10 O
HETATM 185 O HOH A 29 23.623 9.091 16.046 1.00 45.21 O
HETATM 186 O HOH A 30 24.727 8.260 9.181 1.00 47.92 O
HETATM 187 O HOH A 31 13.314 22.303 4.402 1.00 49.17 O
HETATM 188 O HOH A 32 8.749 12.323 25.510 1.00 49.80 O
HETATM 189 O HOH A 33 9.810 5.948 3.184 1.00 49.88 O
HETATM 190 O HOH A 34 25.242 10.665 12.780 1.00 51.46 O
CONECT 122 123 150
CONECT 123 122 124
CONECT 124 123 125
CONECT 125 124 126 127
CONECT 126 125 151
CONECT 127 125 128 150
CONECT 128 127 129 130
CONECT 129 128
CONECT 130 128 131 147
CONECT 131 130 132 133
CONECT 132 131
CONECT 133 131 134 144
CONECT 134 133 135 136
CONECT 135 134 152
CONECT 136 134 137
CONECT 137 136 138 139 143
CONECT 138 137
CONECT 139 137 140 141
CONECT 140 139
CONECT 141 139 142
CONECT 142 141
CONECT 143 137 144
CONECT 144 133 143 145
CONECT 145 144 146 147
CONECT 146 145
CONECT 147 130 145 148
CONECT 148 147 149 150
CONECT 149 148
CONECT 150 122 127 148
CONECT 151 126
CONECT 152 135 153 158
CONECT 153 152 154
CONECT 154 153 155 160
CONECT 155 154 156 157
CONECT 156 155
CONECT 157 155 158 159
CONECT 158 152 157
CONECT 159 157
CONECT 160 154 163
CONECT 161 162
CONECT 162 161 163
CONECT 163 160 162
MASTER 315 0 1 0 0 0 3 6 189 1 42 1
END