data_385D
#
_entry.id 385D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 385D pdb_0000385d 10.2210/pdb385d/pdb
RCSB DDF078 ? ?
WWPDB D_1000178850 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1998-10-30
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-21
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 385D
_pdbx_database_status.recvd_initial_deposition_date 1998-03-05
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Ettorre, A.' 1
'Cirilli, M.' 2
'Ughetto, G.' 3
#
_citation.id primary
_citation.title
'Degradation of the morpholino ring in the crystal structure of cyanomorpholinodoxorubicin complexed with d(CGATCG).'
_citation.journal_abbrev Eur.J.Biochem.
_citation.journal_volume 258
_citation.page_first 350
_citation.page_last 354
_citation.year 1998
_citation.journal_id_ASTM EJBCAI
_citation.country IX
_citation.journal_id_ISSN 0014-2956
_citation.journal_id_CSD 0262
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 9874199
_citation.pdbx_database_id_DOI 10.1046/j.1432-1327.1998.2580350.x
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Ettorre, A.' 1 ?
primary 'Cirilli, M.' 2 ?
primary 'Ughetto, G.' 3 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
;
1809.217 1 ? ? ? ?
2 non-polymer syn N-ETHYLHYDROXY-DOXORUBICIN 587.572 1 ? ? ? ?
3 water nat water 18.015 27 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGATCG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 N-ETHYLHYDROXY-DOXORUBICIN NOD
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DA n
1 4 DT n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
NOD non-polymer . N-ETHYLHYDROXY-DOXORUBICIN ? 'C29 H33 N O12' 587.572
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DA 3 3 3 DA A A . n
A 1 4 DT 4 4 4 DT T A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NOD 1 7 7 NOD NOD A .
C 3 HOH 1 8 8 HOH HOH A .
C 3 HOH 2 9 9 HOH HOH A .
C 3 HOH 3 10 10 HOH HOH A .
C 3 HOH 4 11 11 HOH HOH A .
C 3 HOH 5 12 12 HOH HOH A .
C 3 HOH 6 13 13 HOH HOH A .
C 3 HOH 7 14 14 HOH HOH A .
C 3 HOH 8 15 15 HOH HOH A .
C 3 HOH 9 16 16 HOH HOH A .
C 3 HOH 10 17 17 HOH HOH A .
C 3 HOH 11 18 18 HOH HOH A .
C 3 HOH 12 19 19 HOH HOH A .
C 3 HOH 13 20 20 HOH HOH A .
C 3 HOH 14 21 21 HOH HOH A .
C 3 HOH 15 22 22 HOH HOH A .
C 3 HOH 16 23 23 HOH HOH A .
C 3 HOH 17 24 24 HOH HOH A .
C 3 HOH 18 25 25 HOH HOH A .
C 3 HOH 19 26 26 HOH HOH A .
C 3 HOH 20 27 27 HOH HOH A .
C 3 HOH 21 28 28 HOH HOH A .
C 3 HOH 22 29 29 HOH HOH A .
C 3 HOH 23 30 30 HOH HOH A .
C 3 HOH 24 31 31 HOH HOH A .
C 3 HOH 25 32 32 HOH HOH A .
C 3 HOH 26 33 33 HOH HOH A .
C 3 HOH 27 34 34 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
NUCLSQ refinement . ? 1
TEXSAN 'data reduction' . ? 2
TEXRAY 'data reduction' . ? 3
#
_cell.entry_id 385D
_cell.length_a 28.130
_cell.length_b 28.130
_cell.length_c 53.560
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 385D
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting tetragonal
_symmetry.Int_Tables_number 92
#
_exptl.entry_id 385D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.93
_exptl_crystal.density_percent_sol 57.99
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 5.50
_exptl_crystal_grow.pdbx_details 'pH 5.50, VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 SPERMINE_HCL ? ? ?
1 4 1 'NA CACODYLATE' ? ? ?
1 5 1 MGCL2 ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 298.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'RIGAKU AFC-5R'
_diffrn_detector.pdbx_collection_date 1995-10
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator GRAPHITE
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU RU200'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 385D
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 8.000
_reflns.d_resolution_high 1.600
_reflns.number_obs 3509
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs 0.1210000
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate 9.18
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 385D
_refine.ls_number_reflns_obs 1212
_refine.ls_number_reflns_all 3509
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.000
_refine.ls_d_res_high 1.600
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.2070000
_refine.ls_R_factor_all 0.2060000
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free 0.2170000
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 10.000
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 42
_refine_hist.number_atoms_solvent 27
_refine_hist.number_atoms_total 189
_refine_hist.d_res_high 1.600
_refine_hist.d_res_low 8.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
n_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ?
n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 385D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 385D
_struct.title
'FORMATION OF A NEW COMPOUND IN THE CRYSTAL STRUCTURE OF CYANOMORPHOLINODOXORUBICIN COMPLEXED WITH D(CGATCG)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 385D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 385D
_struct_ref.pdbx_db_accession 385D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 385D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 385D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.1300000000 -1.0000000000
0.0000000000 0.0000000000 28.1300000000 0.0000000000 0.0000000000 -1.0000000000 26.7800000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A NOD 7 ? 10 'BINDING SITE FOR RESIDUE NOD A 7'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 10 DC A 1 ? DC A 1 . ? 8_665 ?
2 AC1 10 DG A 2 ? DG A 2 . ? 8_665 ?
3 AC1 10 DA A 3 ? DA A 3 . ? 8_665 ?
4 AC1 10 DT A 4 ? DT A 4 . ? 8_665 ?
5 AC1 10 DC A 5 ? DC A 5 . ? 1_555 ?
6 AC1 10 DG A 6 ? DG A 6 . ? 1_555 ?
7 AC1 10 HOH C . ? HOH A 13 . ? 1_555 ?
8 AC1 10 HOH C . ? HOH A 15 . ? 8_665 ?
9 AC1 10 HOH C . ? HOH A 21 . ? 1_555 ?
10 AC1 10 HOH C . ? HOH A 23 . ? 1_555 ?
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 O6
_pdbx_validate_symm_contact.auth_asym_id_1 A
_pdbx_validate_symm_contact.auth_comp_id_1 DG
_pdbx_validate_symm_contact.auth_seq_id_1 6
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 O
_pdbx_validate_symm_contact.auth_asym_id_2 A
_pdbx_validate_symm_contact.auth_comp_id_2 HOH
_pdbx_validate_symm_contact.auth_seq_id_2 9
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 8_665
_pdbx_validate_symm_contact.dist 2.07
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.617 1.519 0.098 0.010 N
2 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.317 1.391 -0.074 0.007 N
3 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.214 1.341 -0.127 0.010 N
4 1 "C2'" A DA 3 ? ? "C1'" A DA 3 ? ? 1.584 1.519 0.065 0.010 N
5 1 "O3'" A DA 3 ? ? "C3'" A DA 3 ? ? 1.382 1.419 -0.037 0.006 N
6 1 "O3'" A DT 4 ? ? "C3'" A DT 4 ? ? 1.380 1.419 -0.039 0.006 N
7 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.657 1.593 0.064 0.010 N
8 1 "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 1.608 1.519 0.089 0.010 N
9 1 N3 A DC 5 ? ? C4 A DC 5 ? ? 1.386 1.335 0.051 0.007 N
10 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.327 1.391 -0.064 0.007 N
11 1 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.225 1.341 -0.116 0.010 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 103.62 109.40 -5.78 0.80 N
2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 101.82 108.00 -6.18 0.70 N
3 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 124.55 119.90 4.65 0.50 N
4 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 117.25 121.90 -4.65 0.40 N
5 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.15 118.90 4.25 0.60 N
6 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 95.66 105.70 -10.04 0.90 N
7 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 101.26 109.40 -8.14 0.80 N
8 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 94.46 102.40 -7.94 0.80 N
9 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 100.82 105.90 -5.08 0.80 N
10 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 117.05 108.30 8.75 0.30 N
11 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 121.18 125.10 -3.92 0.60 N
12 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 128.37 123.90 4.47 0.60 N
13 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 108.81 111.90 -3.09 0.50 N
14 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 116.33 111.50 4.83 0.50 N
15 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 121.80 116.20 5.60 0.90 N
16 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 109.83 119.90 -10.07 0.70 N
17 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.69 128.60 -3.91 0.60 N
18 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DA 3 ? ? 129.64 119.70 9.94 1.20 Y
19 1 OP1 A DA 3 ? ? P A DA 3 ? ? OP2 A DA 3 ? ? 128.88 119.60 9.28 1.50 N
20 1 "O5'" A DA 3 ? ? P A DA 3 ? ? OP1 A DA 3 ? ? 97.22 105.70 -8.48 0.90 N
21 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.56 108.30 3.26 0.30 N
22 1 "O5'" A DT 4 ? ? P A DT 4 ? ? OP1 A DT 4 ? ? 95.50 105.70 -10.20 0.90 N
23 1 "O5'" A DT 4 ? ? "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 100.05 109.40 -9.35 0.80 N
24 1 "O5'" A DC 5 ? ? P A DC 5 ? ? OP1 A DC 5 ? ? 97.72 105.70 -7.98 0.90 N
25 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 101.88 109.40 -7.52 0.80 N
26 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 94.52 102.40 -7.88 0.80 N
27 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 99.63 105.90 -6.27 0.80 N
28 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 119.18 108.30 10.88 0.30 N
29 1 C2 A DC 5 ? ? N3 A DC 5 ? ? C4 A DC 5 ? ? 124.72 119.90 4.82 0.50 N
30 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 116.95 121.90 -4.95 0.40 N
31 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP1 A DG 6 ? ? 96.75 105.70 -8.95 0.90 N
32 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 100.63 109.40 -8.77 0.80 N
33 1 P A DG 6 ? ? "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? 103.99 120.90 -16.91 1.60 N
34 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 101.64 104.50 -2.86 0.40 N
35 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 119.70 125.10 -5.40 0.60 N
36 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 129.79 123.90 5.89 0.60 N
37 1 C2 A DG 6 ? ? N3 A DG 6 ? ? C4 A DG 6 ? ? 108.56 111.90 -3.34 0.50 N
38 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 116.96 111.50 5.46 0.50 N
39 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 109.55 119.90 -10.35 0.70 N
40 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 123.66 128.60 -4.94 0.60 N
#
_pdbx_validate_chiral.id 1
_pdbx_validate_chiral.PDB_model_num 1
_pdbx_validate_chiral.auth_atom_id "C3'"
_pdbx_validate_chiral.label_alt_id ?
_pdbx_validate_chiral.auth_asym_id A
_pdbx_validate_chiral.auth_comp_id NOD
_pdbx_validate_chiral.auth_seq_id 7
_pdbx_validate_chiral.PDB_ins_code ?
_pdbx_validate_chiral.details PLANAR
_pdbx_validate_chiral.omega .
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text INTERCALATION
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
HOH O O N N 144
HOH H1 H N N 145
HOH H2 H N N 146
NOD C1 C Y N 147
NOD C2 C Y N 148
NOD C3 C Y N 149
NOD C4 C Y N 150
NOD O4 O N N 151
NOD C5 C Y N 152
NOD C6 C N N 153
NOD O6 O N N 154
NOD C7 C Y N 155
NOD C8 C Y N 156
NOD O8 O N N 157
NOD C9 C Y N 158
NOD C10 C N S 159
NOD O10 O N N 160
NOD C11 C N N 161
NOD C12 C N S 162
NOD O12 O N N 163
NOD C13 C N N 164
NOD O13 O N N 165
NOD C14 C N N 166
NOD O14 O N N 167
NOD C15 C N N 168
NOD C16 C Y N 169
NOD C17 C Y N 170
NOD O17 O N N 171
NOD C18 C Y N 172
NOD C19 C N N 173
NOD O19 O N N 174
NOD C20 C Y N 175
NOD C21 C N N 176
NOD "C1'" C N R 177
NOD "C2'" C N N 178
NOD "C3'" C N R 179
NOD "C4'" C N S 180
NOD "O4'" O N N 181
NOD "C5'" C N S 182
NOD "O5'" O N N 183
NOD "C6'" C N N 184
NOD "N3'" N N N 185
NOD O16 O N N 186
NOD C63 C N N 187
NOD C53 C N N 188
NOD H1 H N N 189
NOD H2 H N N 190
NOD H3 H N N 191
NOD HO8 H N N 192
NOD H10 H N N 193
NOD H111 H N N 194
NOD H112 H N N 195
NOD HO12 H N N 196
NOD H141 H N N 197
NOD H142 H N N 198
NOD HO14 H N N 199
NOD H151 H N N 200
NOD H152 H N N 201
NOD HO17 H N N 202
NOD H211 H N N 203
NOD H212 H N N 204
NOD H213 H N N 205
NOD "H1'" H N N 206
NOD "H2'1" H N N 207
NOD "H2'2" H N N 208
NOD "H3'" H N N 209
NOD "H4'" H N N 210
NOD "HO4'" H N N 211
NOD "H5'" H N N 212
NOD "H6'1" H N N 213
NOD "H6'2" H N N 214
NOD "H6'3" H N N 215
NOD "HN3'" H N N 216
NOD H16 H N N 217
NOD H631 H N N 218
NOD H632 H N N 219
NOD H531 H N N 220
NOD H532 H N N 221
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
NOD C1 C2 doub Y N 152
NOD C1 C20 sing Y N 153
NOD C1 H1 sing N N 154
NOD C2 C3 sing Y N 155
NOD C2 H2 sing N N 156
NOD C3 C4 doub Y N 157
NOD C3 H3 sing N N 158
NOD C4 O4 sing N N 159
NOD C4 C5 sing Y N 160
NOD O4 C21 sing N N 161
NOD C5 C6 sing N N 162
NOD C5 C20 doub Y N 163
NOD C6 O6 doub N N 164
NOD C6 C7 sing N N 165
NOD C7 C8 doub Y N 166
NOD C7 C18 sing Y N 167
NOD C8 O8 sing N N 168
NOD C8 C9 sing Y N 169
NOD O8 HO8 sing N N 170
NOD C9 C10 sing N N 171
NOD C9 C16 doub Y N 172
NOD C10 O10 sing N N 173
NOD C10 C11 sing N N 174
NOD C10 H10 sing N N 175
NOD O10 "C1'" sing N N 176
NOD C11 C12 sing N N 177
NOD C11 H111 sing N N 178
NOD C11 H112 sing N N 179
NOD C12 O12 sing N N 180
NOD C12 C13 sing N N 181
NOD C12 C15 sing N N 182
NOD O12 HO12 sing N N 183
NOD C13 O13 doub N N 184
NOD C13 C14 sing N N 185
NOD C14 O14 sing N N 186
NOD C14 H141 sing N N 187
NOD C14 H142 sing N N 188
NOD O14 HO14 sing N N 189
NOD C15 C16 sing N N 190
NOD C15 H151 sing N N 191
NOD C15 H152 sing N N 192
NOD C16 C17 sing Y N 193
NOD C17 O17 sing N N 194
NOD C17 C18 doub Y N 195
NOD O17 HO17 sing N N 196
NOD C18 C19 sing N N 197
NOD C19 O19 doub N N 198
NOD C19 C20 sing N N 199
NOD C21 H211 sing N N 200
NOD C21 H212 sing N N 201
NOD C21 H213 sing N N 202
NOD "C1'" "C2'" sing N N 203
NOD "C1'" "O5'" sing N N 204
NOD "C1'" "H1'" sing N N 205
NOD "C2'" "C3'" sing N N 206
NOD "C2'" "H2'1" sing N N 207
NOD "C2'" "H2'2" sing N N 208
NOD "C3'" "C4'" sing N N 209
NOD "C3'" "N3'" sing N N 210
NOD "C3'" "H3'" sing N N 211
NOD "C4'" "O4'" sing N N 212
NOD "C4'" "C5'" sing N N 213
NOD "C4'" "H4'" sing N N 214
NOD "O4'" "HO4'" sing N N 215
NOD "C5'" "O5'" sing N N 216
NOD "C5'" "C6'" sing N N 217
NOD "C5'" "H5'" sing N N 218
NOD "C6'" "H6'1" sing N N 219
NOD "C6'" "H6'2" sing N N 220
NOD "C6'" "H6'3" sing N N 221
NOD "N3'" C53 sing N N 222
NOD "N3'" "HN3'" sing N N 223
NOD O16 C63 sing N N 224
NOD O16 H16 sing N N 225
NOD C63 C53 sing N N 226
NOD C63 H631 sing N N 227
NOD C63 H632 sing N N 228
NOD C53 H531 sing N N 229
NOD C53 H532 sing N N 230
#
_ndb_struct_conf_na.entry_id 385D
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 8_665 0.167 -0.222 -0.040 9.654 -1.468 2.898 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 8_665 0.116 -0.231 -0.017 -11.310 0.978 3.050 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DA 3 1_555 A DT 4 8_665 0.435 -0.183 -0.134 -11.608 -4.503 0.645 3 A_DA3:DT4_A A 3 ? A 4 ? 20 1
1 A DT 4 1_555 A DA 3 8_665 -0.435 -0.183 -0.134 11.608 -4.503 0.645 4 A_DT4:DA3_A A 4 ? A 3 ? 20 1
1 A DC 5 1_555 A DG 2 8_665 -0.116 -0.231 -0.017 11.310 0.978 3.050 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 8_665 -0.167 -0.222 -0.040 -9.654 -1.468 2.898 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.100 1.103 7.023 -0.489 -4.557 35.840 3.146 -1.921 6.821 -7.368 0.791
36.123 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 8_665 A DA 3 1_555 A DT 4 8_665 -1.061 0.389 3.486 -2.861 4.562 33.320 -0.135 1.324 3.582 7.892 4.949
33.740 2 AA_DG2DA3:DT4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DA 3 1_555 A DT 4 8_665 A DT 4 1_555 A DA 3 8_665 0.000 -0.461 2.876 0.000 0.815 25.401 -1.253 0.000 2.860 1.853 0.000
25.414 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DT 4 1_555 A DA 3 8_665 A DC 5 1_555 A DG 2 8_665 1.061 0.389 3.486 2.861 4.562 33.320 -0.135 -1.324 3.582 7.892 -4.949
33.740 4 AA_DT4DC5:DG2DA3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.100 1.103 7.023 0.489 -4.557 35.840 3.146 1.921 6.821 -7.368 -0.791
36.123 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_atom_sites.entry_id 385D
_atom_sites.fract_transf_matrix[1][1] 0.035549
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.035549
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.018671
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 9.635 20.818 22.941 1.00 12.61 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 9.868 21.112 24.303 1.00 13.01 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 11.403 20.988 24.445 1.00 13.21 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 11.647 19.754 25.173 1.00 12.96 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 12.286 20.915 23.168 1.00 13.68 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 13.305 21.877 23.258 1.00 14.86 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 12.859 19.518 23.141 1.00 13.12 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 12.674 19.003 24.606 1.00 12.48 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 12.127 17.608 24.707 1.00 11.83 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 13.061 16.638 24.928 1.00 11.65 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 14.247 16.871 25.036 1.00 11.56 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 12.596 15.356 25.004 1.00 11.47 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 11.278 15.001 24.903 1.00 11.41 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 10.944 13.677 25.010 1.00 11.57 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 10.340 16.042 24.669 1.00 11.95 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 10.791 17.305 24.588 1.00 11.72 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 13.776 22.788 22.051 1.00 15.83 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 14.462 23.938 22.666 1.00 15.92 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 12.684 22.984 21.167 1.00 15.97 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 14.696 21.937 20.986 1.00 15.15 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 15.751 21.184 21.561 1.00 14.23 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 16.342 20.505 20.324 1.00 13.64 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 15.677 19.213 20.256 1.00 12.92 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 16.124 21.170 18.918 1.00 13.73 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 17.093 20.788 18.000 1.00 15.10 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 14.772 20.560 18.571 1.00 13.13 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 15.221 19.048 18.928 1.00 12.01 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 14.097 18.235 18.737 1.00 11.54 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 12.819 18.626 18.621 1.00 11.03 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 11.958 17.619 18.435 1.00 10.95 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 12.767 16.516 18.437 1.00 10.72 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 12.467 15.130 18.279 1.00 10.37 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 11.306 14.660 18.110 1.00 10.35 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 13.488 14.301 18.339 1.00 10.13 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 14.732 14.749 18.522 1.00 9.92 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 15.682 13.995 18.576 1.00 9.43 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 15.150 16.024 18.673 1.00 10.50 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 14.083 16.839 18.620 1.00 10.71 ? 2 DG A C4 1
ATOM 39 P P . DA A 1 3 ? 18.201 21.669 17.263 1.00 16.10 ? 3 DA A P 1
ATOM 40 O OP1 . DA A 1 3 ? 18.885 22.272 18.345 1.00 15.94 ? 3 DA A OP1 1
ATOM 41 O OP2 . DA A 1 3 ? 17.511 22.308 16.142 1.00 16.20 ? 3 DA A OP2 1
ATOM 42 O "O5'" . DA A 1 3 ? 19.474 20.806 16.668 1.00 15.88 ? 3 DA A "O5'" 1
ATOM 43 C "C5'" . DA A 1 3 ? 20.251 20.064 17.560 1.00 15.35 ? 3 DA A "C5'" 1
ATOM 44 C "C4'" . DA A 1 3 ? 20.456 18.668 16.930 1.00 14.83 ? 3 DA A "C4'" 1
ATOM 45 O "O4'" . DA A 1 3 ? 19.220 18.025 17.110 1.00 14.08 ? 3 DA A "O4'" 1
ATOM 46 C "C3'" . DA A 1 3 ? 20.697 18.673 15.402 1.00 15.18 ? 3 DA A "C3'" 1
ATOM 47 O "O3'" . DA A 1 3 ? 22.015 18.320 15.180 1.00 16.34 ? 3 DA A "O3'" 1
ATOM 48 C "C2'" . DA A 1 3 ? 19.735 17.685 14.803 1.00 14.57 ? 3 DA A "C2'" 1
ATOM 49 C "C1'" . DA A 1 3 ? 18.930 17.124 16.046 1.00 13.72 ? 3 DA A "C1'" 1
ATOM 50 N N9 . DA A 1 3 ? 17.533 17.052 15.788 1.00 12.94 ? 3 DA A N9 1
ATOM 51 C C8 . DA A 1 3 ? 16.657 18.054 15.790 1.00 12.85 ? 3 DA A C8 1
ATOM 52 N N7 . DA A 1 3 ? 15.407 17.691 15.552 1.00 12.76 ? 3 DA A N7 1
ATOM 53 C C5 . DA A 1 3 ? 15.513 16.339 15.386 1.00 12.71 ? 3 DA A C5 1
ATOM 54 C C6 . DA A 1 3 ? 14.521 15.344 15.110 1.00 12.64 ? 3 DA A C6 1
ATOM 55 N N6 . DA A 1 3 ? 13.218 15.667 14.915 1.00 12.66 ? 3 DA A N6 1
ATOM 56 N N1 . DA A 1 3 ? 14.933 14.075 15.051 1.00 12.42 ? 3 DA A N1 1
ATOM 57 C C2 . DA A 1 3 ? 16.224 13.794 15.203 1.00 12.07 ? 3 DA A C2 1
ATOM 58 N N3 . DA A 1 3 ? 17.231 14.634 15.453 1.00 12.55 ? 3 DA A N3 1
ATOM 59 C C4 . DA A 1 3 ? 16.794 15.897 15.542 1.00 12.72 ? 3 DA A C4 1
ATOM 60 P P . DT A 1 4 ? 22.665 18.048 13.752 1.00 16.49 ? 4 DT A P 1
ATOM 61 O OP1 . DT A 1 4 ? 24.005 17.696 14.103 1.00 16.34 ? 4 DT A OP1 1
ATOM 62 O OP2 . DT A 1 4 ? 22.277 19.145 12.866 1.00 16.46 ? 4 DT A OP2 1
ATOM 63 O "O5'" . DT A 1 4 ? 22.260 16.574 13.183 1.00 16.43 ? 4 DT A "O5'" 1
ATOM 64 C "C5'" . DT A 1 4 ? 22.809 15.410 13.801 1.00 15.92 ? 4 DT A "C5'" 1
ATOM 65 C "C4'" . DT A 1 4 ? 22.112 14.311 12.972 1.00 15.61 ? 4 DT A "C4'" 1
ATOM 66 O "O4'" . DT A 1 4 ? 20.684 14.374 13.158 1.00 15.60 ? 4 DT A "O4'" 1
ATOM 67 C "C3'" . DT A 1 4 ? 22.349 14.429 11.414 1.00 15.64 ? 4 DT A "C3'" 1
ATOM 68 O "O3'" . DT A 1 4 ? 22.993 13.241 11.132 1.00 15.79 ? 4 DT A "O3'" 1
ATOM 69 C "C2'" . DT A 1 4 ? 20.999 14.693 10.811 1.00 15.14 ? 4 DT A "C2'" 1
ATOM 70 C "C1'" . DT A 1 4 ? 20.037 14.170 11.907 1.00 14.72 ? 4 DT A "C1'" 1
ATOM 71 N N1 . DT A 1 4 ? 18.696 14.860 11.921 1.00 14.35 ? 4 DT A N1 1
ATOM 72 C C2 . DT A 1 4 ? 17.646 14.001 11.948 1.00 14.28 ? 4 DT A C2 1
ATOM 73 O O2 . DT A 1 4 ? 17.747 12.786 11.965 1.00 14.46 ? 4 DT A O2 1
ATOM 74 N N3 . DT A 1 4 ? 16.401 14.574 11.944 1.00 14.19 ? 4 DT A N3 1
ATOM 75 C C4 . DT A 1 4 ? 16.172 15.935 11.917 1.00 14.18 ? 4 DT A C4 1
ATOM 76 O O4 . DT A 1 4 ? 14.974 16.309 11.937 1.00 14.03 ? 4 DT A O4 1
ATOM 77 C C5 . DT A 1 4 ? 17.304 16.789 11.893 1.00 14.35 ? 4 DT A C5 1
ATOM 78 C C7 . DT A 1 4 ? 17.181 18.283 11.880 1.00 14.09 ? 4 DT A C7 1
ATOM 79 C C6 . DT A 1 4 ? 18.511 16.219 11.880 1.00 14.29 ? 4 DT A C6 1
ATOM 80 P P . DC A 1 5 ? 23.941 12.973 9.895 1.00 16.17 ? 5 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? 24.466 11.691 10.191 1.00 16.07 ? 5 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? 24.691 14.185 9.570 1.00 16.05 ? 5 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? 22.953 12.525 8.642 1.00 15.98 ? 5 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? 22.526 11.163 8.767 1.00 15.42 ? 5 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? 21.251 11.162 7.960 1.00 14.91 ? 5 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 20.208 12.000 8.600 1.00 14.73 ? 5 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? 21.333 11.723 6.526 1.00 14.99 ? 5 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? 20.503 10.871 5.779 1.00 15.39 ? 5 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? 20.692 13.097 6.649 1.00 14.68 ? 5 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? 19.483 12.590 7.580 1.00 14.04 ? 5 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? 18.650 13.790 7.880 1.00 13.80 ? 5 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 17.303 13.613 8.003 1.00 13.64 ? 5 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 16.782 12.511 7.908 1.00 13.39 ? 5 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 16.568 14.740 8.245 1.00 13.61 ? 5 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 17.096 16.016 8.366 1.00 13.71 ? 5 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 16.291 17.104 8.585 1.00 13.87 ? 5 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? 18.499 16.147 8.218 1.00 13.66 ? 5 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? 19.207 15.046 7.981 1.00 13.67 ? 5 DC A C6 1
ATOM 99 P P . DG A 1 6 ? 21.204 9.941 4.716 1.00 15.37 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 22.060 9.134 5.485 1.00 15.93 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 21.645 10.874 3.659 1.00 15.36 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 20.214 8.741 4.207 1.00 14.86 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 18.870 9.343 4.256 1.00 14.11 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 18.078 8.320 3.478 1.00 13.42 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 16.993 8.896 2.777 1.00 12.92 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 18.882 7.622 2.305 1.00 13.34 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 18.156 6.428 2.108 1.00 13.92 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 18.846 8.675 1.231 1.00 12.38 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 17.438 9.287 1.483 1.00 11.84 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 17.487 10.689 1.532 1.00 11.26 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 18.580 11.473 1.517 1.00 11.01 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 18.299 12.762 1.513 1.00 10.85 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 16.937 12.795 1.496 1.00 10.79 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 16.020 13.890 1.497 1.00 10.70 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 16.376 15.100 1.491 1.00 10.67 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 14.727 13.592 1.469 1.00 10.39 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 14.344 12.318 1.471 1.00 10.16 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 13.155 12.023 1.455 1.00 10.02 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 15.084 11.199 1.481 1.00 10.62 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 16.390 11.547 1.510 1.00 10.93 ? 6 DG A C4 1
HETATM 121 C C1 . NOD B 2 . ? 15.474 18.291 5.124 1.00 8.74 ? 7 NOD A C1 1
HETATM 122 C C2 . NOD B 2 . ? 16.670 19.011 5.107 1.00 8.92 ? 7 NOD A C2 1
HETATM 123 C C3 . NOD B 2 . ? 17.872 18.280 4.997 1.00 9.37 ? 7 NOD A C3 1
HETATM 124 C C4 . NOD B 2 . ? 17.829 16.891 4.906 1.00 9.10 ? 7 NOD A C4 1
HETATM 125 O O4 . NOD B 2 . ? 19.025 16.164 4.808 1.00 9.66 ? 7 NOD A O4 1
HETATM 126 C C5 . NOD B 2 . ? 16.637 16.170 4.943 1.00 8.47 ? 7 NOD A C5 1
HETATM 127 C C6 . NOD B 2 . ? 16.587 14.785 4.866 1.00 8.12 ? 7 NOD A C6 1
HETATM 128 O O6 . NOD B 2 . ? 17.735 13.988 4.742 1.00 7.26 ? 7 NOD A O6 1
HETATM 129 C C7 . NOD B 2 . ? 15.365 14.135 4.920 1.00 7.67 ? 7 NOD A C7 1
HETATM 130 C C8 . NOD B 2 . ? 15.328 12.747 4.811 1.00 8.14 ? 7 NOD A C8 1
HETATM 131 O O8 . NOD B 2 . ? 16.529 12.040 4.723 1.00 7.76 ? 7 NOD A O8 1
HETATM 132 C C9 . NOD B 2 . ? 14.087 12.107 4.817 1.00 8.34 ? 7 NOD A C9 1
HETATM 133 C C10 . NOD B 2 . ? 14.135 10.613 4.745 1.00 8.68 ? 7 NOD A C10 1
HETATM 134 O O10 . NOD B 2 . ? 14.995 10.210 5.774 1.00 9.03 ? 7 NOD A O10 1
HETATM 135 C C11 . NOD B 2 . ? 12.779 9.884 4.608 1.00 9.09 ? 7 NOD A C11 1
HETATM 136 C C12 . NOD B 2 . ? 11.709 10.633 5.467 1.00 9.22 ? 7 NOD A C12 1
HETATM 137 O O12 . NOD B 2 . ? 11.976 10.602 6.846 1.00 9.57 ? 7 NOD A O12 1
HETATM 138 C C13 . NOD B 2 . ? 10.312 10.089 5.146 1.00 9.80 ? 7 NOD A C13 1
HETATM 139 O O13 . NOD B 2 . ? 9.777 10.410 3.911 1.00 9.82 ? 7 NOD A O13 1
HETATM 140 C C14 . NOD B 2 . ? 9.593 9.307 6.166 1.00 10.28 ? 7 NOD A C14 1
HETATM 141 O O14 . NOD B 2 . ? 9.229 8.024 5.628 1.00 10.98 ? 7 NOD A O14 1
HETATM 142 C C15 . NOD B 2 . ? 11.601 12.108 4.982 1.00 8.89 ? 7 NOD A C15 1
HETATM 143 C C16 . NOD B 2 . ? 12.900 12.819 4.963 1.00 8.32 ? 7 NOD A C16 1
HETATM 144 C C17 . NOD B 2 . ? 12.958 14.207 5.018 1.00 7.81 ? 7 NOD A C17 1
HETATM 145 O O17 . NOD B 2 . ? 11.834 15.005 5.146 1.00 6.96 ? 7 NOD A O17 1
HETATM 146 C C18 . NOD B 2 . ? 14.187 14.864 5.001 1.00 7.83 ? 7 NOD A C18 1
HETATM 147 C C19 . NOD B 2 . ? 14.208 16.258 5.073 1.00 8.37 ? 7 NOD A C19 1
HETATM 148 O O19 . NOD B 2 . ? 13.100 17.001 5.188 1.00 8.64 ? 7 NOD A O19 1
HETATM 149 C C20 . NOD B 2 . ? 15.453 16.897 5.063 1.00 8.42 ? 7 NOD A C20 1
HETATM 150 C C21 . NOD B 2 . ? 20.246 16.928 5.165 1.00 9.61 ? 7 NOD A C21 1
HETATM 151 C "C1'" . NOD B 2 . ? 15.662 8.979 5.873 1.00 10.17 ? 7 NOD A "C1'" 1
HETATM 152 C "C2'" . NOD B 2 . ? 16.871 8.986 6.829 1.00 10.54 ? 7 NOD A "C2'" 1
HETATM 153 C "C3'" . NOD B 2 . ? 16.431 8.742 8.255 1.00 11.23 ? 7 NOD A "C3'" 1
HETATM 154 C "C4'" . NOD B 2 . ? 15.327 7.720 8.526 1.00 10.87 ? 7 NOD A "C4'" 1
HETATM 155 O "O4'" . NOD B 2 . ? 15.789 6.340 8.237 1.00 10.63 ? 7 NOD A "O4'" 1
HETATM 156 C "C5'" . NOD B 2 . ? 14.179 7.946 7.485 1.00 10.59 ? 7 NOD A "C5'" 1
HETATM 157 O "O5'" . NOD B 2 . ? 14.799 7.852 6.142 1.00 10.20 ? 7 NOD A "O5'" 1
HETATM 158 C "C6'" . NOD B 2 . ? 13.165 6.806 7.495 1.00 10.95 ? 7 NOD A "C6'" 1
HETATM 159 N "N3'" . NOD B 2 . ? 16.953 9.703 9.217 1.00 11.69 ? 7 NOD A "N3'" 1
HETATM 160 O O16 . NOD B 2 . ? 16.802 7.206 12.138 1.00 13.80 ? 7 NOD A O16 1
HETATM 161 C C63 . NOD B 2 . ? 16.167 8.166 11.173 1.00 13.13 ? 7 NOD A C63 1
HETATM 162 C C53 . NOD B 2 . ? 17.075 9.288 10.623 1.00 12.57 ? 7 NOD A C53 1
HETATM 163 O O . HOH C 3 . ? 22.496 15.522 7.732 1.00 15.89 ? 8 HOH A O 1
HETATM 164 O O . HOH C 3 . ? 11.579 10.275 25.377 1.00 19.48 ? 9 HOH A O 1
HETATM 165 O O . HOH C 3 . ? 25.077 9.918 6.047 1.00 20.15 ? 10 HOH A O 1
HETATM 166 O O . HOH C 3 . ? 23.594 5.669 4.619 1.00 23.02 ? 11 HOH A O 1
HETATM 167 O O . HOH C 3 . ? 13.928 8.589 1.558 1.00 23.07 ? 12 HOH A O 1
HETATM 168 O O . HOH C 3 . ? 20.053 14.505 2.443 1.00 24.27 ? 13 HOH A O 1
HETATM 169 O O . HOH C 3 . ? 9.767 14.109 15.077 1.00 24.93 ? 14 HOH A O 1
HETATM 170 O O . HOH C 3 . ? 16.298 18.947 24.705 1.00 25.59 ? 15 HOH A O 1
HETATM 171 O O . HOH C 3 . ? 9.397 21.746 19.919 1.00 26.16 ? 16 HOH A O 1
HETATM 172 O O . HOH C 3 . ? 18.346 8.064 14.908 1.00 27.83 ? 17 HOH A O 1
HETATM 173 O O . HOH C 3 . ? 13.462 19.360 14.920 1.00 30.41 ? 18 HOH A O 1
HETATM 174 O O . HOH C 3 . ? 9.752 17.255 16.146 1.00 33.01 ? 19 HOH A O 1
HETATM 175 O O . HOH C 3 . ? 22.328 10.679 0.975 1.00 36.59 ? 20 HOH A O 1
HETATM 176 O O . HOH C 3 . ? 19.256 7.656 8.664 1.00 37.07 ? 21 HOH A O 1
HETATM 177 O O . HOH C 3 . ? 11.092 17.802 14.373 1.00 38.02 ? 22 HOH A O 1
HETATM 178 O O . HOH C 3 . ? 18.242 5.349 6.662 1.00 40.35 ? 23 HOH A O 1
HETATM 179 O O . HOH C 3 . ? 23.026 7.431 0.620 1.00 41.33 ? 24 HOH A O 1
HETATM 180 O O . HOH C 3 . ? 24.944 13.699 16.230 1.00 43.89 ? 25 HOH A O 1
HETATM 181 O O . HOH C 3 . ? 4.895 14.622 10.429 1.00 44.43 ? 26 HOH A O 1
HETATM 182 O O . HOH C 3 . ? 17.047 2.177 8.193 1.00 44.75 ? 27 HOH A O 1
HETATM 183 O O . HOH C 3 . ? 14.512 21.450 26.283 1.00 45.10 ? 28 HOH A O 1
HETATM 184 O O . HOH C 3 . ? 23.623 9.091 16.046 1.00 45.21 ? 29 HOH A O 1
HETATM 185 O O . HOH C 3 . ? 24.727 8.260 9.181 1.00 47.92 ? 30 HOH A O 1
HETATM 186 O O . HOH C 3 . ? 13.314 22.303 4.402 1.00 49.17 ? 31 HOH A O 1
HETATM 187 O O . HOH C 3 . ? 8.749 12.323 25.510 1.00 49.80 ? 32 HOH A O 1
HETATM 188 O O . HOH C 3 . ? 9.810 5.948 3.184 1.00 49.88 ? 33 HOH A O 1
HETATM 189 O O . HOH C 3 . ? 25.242 10.665 12.780 1.00 51.46 ? 34 HOH A O 1
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