data_382D
#
_entry.id 382D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 382D pdb_0000382d 10.2210/pdb382d/pdb
NDB ADJ0109 ? ?
RCSB RCSB001314 ? ?
WWPDB D_1000001314 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1999-10-14
2 'Structure model' 1 1 2007-10-16
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2011-11-16
5 'Structure model' 1 4 2017-10-04
6 'Structure model' 2 0 2023-12-27
7 'Structure model' 2 1 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Atomic model'
4 5 'Structure model' 'Refinement description'
5 6 'Structure model' 'Atomic model'
6 6 'Structure model' 'Data collection'
7 6 'Structure model' 'Database references'
8 6 'Structure model' 'Derived calculations'
9 7 'Structure model' Advisory
10 7 'Structure model' 'Derived calculations'
11 7 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 5 'Structure model' software
2 6 'Structure model' atom_site
3 6 'Structure model' chem_comp_atom
4 6 'Structure model' chem_comp_bond
5 6 'Structure model' database_2
6 6 'Structure model' pdbx_struct_conn_angle
7 6 'Structure model' struct_conn
8 6 'Structure model' struct_site
9 7 'Structure model' pdbx_initial_refinement_model
10 7 'Structure model' pdbx_struct_special_symmetry
11 7 'Structure model' pdbx_validate_symm_contact
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_software.name'
2 6 'Structure model' '_atom_site.occupancy'
3 6 'Structure model' '_database_2.pdbx_DOI'
4 6 'Structure model' '_database_2.pdbx_database_accession'
5 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
6 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
7 6 'Structure model' '_pdbx_struct_conn_angle.value'
8 6 'Structure model' '_struct_conn.pdbx_dist_value'
9 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
10 6 'Structure model' '_struct_site.pdbx_auth_asym_id'
11 6 'Structure model' '_struct_site.pdbx_auth_comp_id'
12 6 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 382D
_pdbx_database_status.recvd_initial_deposition_date 1998-03-02
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Mayer-Jung, C.' 1
'Moras, D.' 2
'Timsit, Y.' 3
#
_citation.id primary
_citation.title 'Hydration and recognition of methylated CpG steps in DNA.'
_citation.journal_abbrev 'EMBO J.'
_citation.journal_volume 17
_citation.page_first 2709
_citation.page_last 2718
_citation.year 1998
_citation.journal_id_ASTM EMJODG
_citation.country UK
_citation.journal_id_ISSN 0261-4189
_citation.journal_id_CSD 0897
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 9564052
_citation.pdbx_database_id_DOI 10.1093/emboj/17.9.2709
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Mayer-Jung, C.' 1 ?
primary 'Moras, D.' 2 ?
primary 'Timsit, Y.' 3 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*CP*GP*CP*CP*GP*GP*CP*GP*G)-3')
;
3046.980 1 ? ? ? ?
2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ?
3 water nat water 18.015 38 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DC)(DC)(DG)(DG)(DC)(DG)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CCGCCGGCGG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'MAGNESIUM ION' MG
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DC n
1 3 DG n
1 4 DC n
1 5 DC n
1 6 DG n
1 7 DG n
1 8 DC n
1 9 DG n
1 10 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DC 2 2 2 DC C A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 DC 4 4 4 DC C A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
A 1 7 DG 7 7 7 DG G A . n
A 1 8 DC 8 8 8 DC C A . n
A 1 9 DG 9 9 9 DG G A . n
A 1 10 DG 10 10 10 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG 1 11 11 MG MO6 A .
C 3 HOH 1 12 12 HOH HOH A .
C 3 HOH 2 13 13 HOH HOH A .
C 3 HOH 3 14 14 HOH HOH A .
C 3 HOH 4 15 15 HOH HOH A .
C 3 HOH 5 16 16 HOH HOH A .
C 3 HOH 6 17 17 HOH HOH A .
C 3 HOH 7 18 18 HOH HOH A .
C 3 HOH 8 19 19 HOH HOH A .
C 3 HOH 9 20 20 HOH HOH A .
C 3 HOH 10 21 21 HOH HOH A .
C 3 HOH 11 22 22 HOH HOH A .
C 3 HOH 12 23 23 HOH HOH A .
C 3 HOH 13 24 24 HOH HOH A .
C 3 HOH 14 25 25 HOH HOH A .
C 3 HOH 15 26 26 HOH HOH A .
C 3 HOH 16 27 27 HOH HOH A .
C 3 HOH 17 28 28 HOH HOH A .
C 3 HOH 18 29 29 HOH HOH A .
C 3 HOH 19 30 30 HOH HOH A .
C 3 HOH 20 31 31 HOH HOH A .
C 3 HOH 21 32 32 HOH HOH A .
C 3 HOH 22 33 33 HOH HOH A .
C 3 HOH 23 34 34 HOH HOH A .
C 3 HOH 24 35 35 HOH HOH A .
C 3 HOH 25 36 36 HOH HOH A .
C 3 HOH 26 37 37 HOH HOH A .
C 3 HOH 27 38 38 HOH HOH A .
C 3 HOH 28 39 39 HOH HOH A .
C 3 HOH 29 40 40 HOH HOH A .
C 3 HOH 30 41 41 HOH HOH A .
C 3 HOH 31 42 42 HOH HOH A .
C 3 HOH 32 43 43 HOH HOH A .
C 3 HOH 33 44 11 HOH MO6 A .
C 3 HOH 34 45 11 HOH MO6 A .
C 3 HOH 35 46 11 HOH MO6 A .
C 3 HOH 36 47 11 HOH MO6 A .
C 3 HOH 37 48 11 HOH MO6 A .
C 3 HOH 38 49 11 HOH MO6 A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
AMoRE phasing . ? 1
X-PLOR 'model building' . ? 2
X-PLOR refinement 3.851 ? 3
X-GEN 'data reduction' . ? 4
X-GEN 'data scaling' . ? 5
X-PLOR phasing . ? 6
#
_cell.entry_id 382D
_cell.length_a 41.500
_cell.length_b 41.500
_cell.length_c 57.500
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 382D
_symmetry.space_group_name_H-M 'P 65 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting hexagonal
_symmetry.Int_Tables_number 179
#
_exptl.entry_id 382D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 2
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 44.81
_exptl_crystal.density_Matthews 2.23
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.00
_exptl_crystal_grow.pdbx_details 'pH 6.00'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 SPERMINE ? ? ?
1 4 1 MGCL2 ? ? ?
1 5 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 273.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'AREA DETECTOR'
_diffrn_detector.type SIEMENS
_diffrn_detector.pdbx_collection_date 1994-03
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type SIEMENS
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 382D
_reflns.observed_criterion_sigma_I 1.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 15.000
_reflns.d_resolution_high 2.200
_reflns.number_obs 1510
_reflns.number_all ?
_reflns.percent_possible_obs 88.900
_reflns.pdbx_Rmerge_I_obs 0.0560000
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 4.300
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 382D
_refine.ls_number_reflns_obs 1448
_refine.ls_number_reflns_all 1510
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 7.000
_refine.ls_d_res_high 2.200
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1970000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.1970000
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model 'STANDARD A-DNA'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLECEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 202
_refine_hist.pdbx_number_atoms_ligand 7
_refine_hist.number_atoms_solvent 32
_refine_hist.number_atoms_total 241
_refine_hist.d_res_high 2.200
_refine_hist.d_res_low 7.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 1.00 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d 26.0 ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d 1.30 ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 382D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 382D
_struct.title 'HYDRATION AND RECOGNITION OF METHYLATED CPG STEPS IN DNA.'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 382D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 382D
_struct_ref.pdbx_db_accession 382D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 382D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 10
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 382D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 10
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 10
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 28.7500000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 11 A HOH 44 1_555 ? ? ? ? ? ? ? 2.008 ? ?
metalc2 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 11 A HOH 45 1_555 ? ? ? ? ? ? ? 2.484 ? ?
metalc3 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 11 A HOH 46 1_555 ? ? ? ? ? ? ? 2.459 ? ?
metalc4 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 11 A HOH 47 1_555 ? ? ? ? ? ? ? 1.902 ? ?
metalc5 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 11 A HOH 48 1_555 ? ? ? ? ? ? ? 2.100 ? ?
metalc6 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 11 A HOH 49 1_555 ? ? ? ? ? ? ? 2.533 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 10 N1 ? ? A DC 1 A DG 10 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 10 O6 ? ? A DC 1 A DG 10 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 10 N2 ? ? A DC 1 A DG 10 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 3 A DC 8 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 3 A DC 8 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 3 A DC 8 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 4 A DG 7 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 4 A DG 7 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 4 A DG 7 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 5 A DG 6 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 5 A DG 6 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 5 A DG 6 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 6 A DC 5 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 6 A DC 5 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 6 A DC 5 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 7 A DC 4 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 7 A DC 4 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 7 A DC 4 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 8 A DG 3 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 8 A DG 3 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 8 A DG 3 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog26 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 10 A DC 1 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog29 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 10 A DC 1 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 10 A DC 1 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O ? C HOH . ? A HOH 44 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 45 ? 1_555 96.2 ?
2 O ? C HOH . ? A HOH 44 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 46 ? 1_555 97.0 ?
3 O ? C HOH . ? A HOH 45 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 46 ? 1_555 75.0 ?
4 O ? C HOH . ? A HOH 44 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 47 ? 1_555 92.8 ?
5 O ? C HOH . ? A HOH 45 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 47 ? 1_555 168.3 ?
6 O ? C HOH . ? A HOH 46 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 47 ? 1_555 96.4 ?
7 O ? C HOH . ? A HOH 44 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 48 ? 1_555 169.6 ?
8 O ? C HOH . ? A HOH 45 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 48 ? 1_555 73.6 ?
9 O ? C HOH . ? A HOH 46 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 48 ? 1_555 78.9 ?
10 O ? C HOH . ? A HOH 47 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 48 ? 1_555 97.2 ?
11 O ? C HOH . ? A HOH 44 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 49 ? 1_555 94.9 ?
12 O ? C HOH . ? A HOH 45 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 49 ? 1_555 82.2 ?
13 O ? C HOH . ? A HOH 46 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 49 ? 1_555 155.3 ?
14 O ? C HOH . ? A HOH 47 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 49 ? 1_555 104.6 ?
15 O ? C HOH . ? A HOH 48 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? C HOH . ? A HOH 49 ? 1_555 85.6 ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id MG
_struct_site.pdbx_auth_seq_id 11
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 6
_struct_site.details 'BINDING SITE FOR RESIDUE MG A 11'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 6 HOH C . ? HOH A 44 . ? 1_555 ?
2 AC1 6 HOH C . ? HOH A 45 . ? 1_555 ?
3 AC1 6 HOH C . ? HOH A 46 . ? 1_555 ?
4 AC1 6 HOH C . ? HOH A 47 . ? 1_555 ?
5 AC1 6 HOH C . ? HOH A 48 . ? 1_555 ?
6 AC1 6 HOH C . ? HOH A 49 . ? 1_555 ?
#
_pdbx_validate_planes.id 1
_pdbx_validate_planes.PDB_model_num 1
_pdbx_validate_planes.auth_comp_id DG
_pdbx_validate_planes.auth_asym_id A
_pdbx_validate_planes.auth_seq_id 10
_pdbx_validate_planes.PDB_ins_code ?
_pdbx_validate_planes.label_alt_id ?
_pdbx_validate_planes.rmsd 0.057
_pdbx_validate_planes.type 'SIDE CHAIN'
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 19 ? C HOH .
2 1 A HOH 30 ? C HOH .
3 1 A HOH 31 ? C HOH .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DC OP3 O N N 1
DC P P N N 2
DC OP1 O N N 3
DC OP2 O N N 4
DC "O5'" O N N 5
DC "C5'" C N N 6
DC "C4'" C N R 7
DC "O4'" O N N 8
DC "C3'" C N S 9
DC "O3'" O N N 10
DC "C2'" C N N 11
DC "C1'" C N R 12
DC N1 N N N 13
DC C2 C N N 14
DC O2 O N N 15
DC N3 N N N 16
DC C4 C N N 17
DC N4 N N N 18
DC C5 C N N 19
DC C6 C N N 20
DC HOP3 H N N 21
DC HOP2 H N N 22
DC "H5'" H N N 23
DC "H5''" H N N 24
DC "H4'" H N N 25
DC "H3'" H N N 26
DC "HO3'" H N N 27
DC "H2'" H N N 28
DC "H2''" H N N 29
DC "H1'" H N N 30
DC H41 H N N 31
DC H42 H N N 32
DC H5 H N N 33
DC H6 H N N 34
DG OP3 O N N 35
DG P P N N 36
DG OP1 O N N 37
DG OP2 O N N 38
DG "O5'" O N N 39
DG "C5'" C N N 40
DG "C4'" C N R 41
DG "O4'" O N N 42
DG "C3'" C N S 43
DG "O3'" O N N 44
DG "C2'" C N N 45
DG "C1'" C N R 46
DG N9 N Y N 47
DG C8 C Y N 48
DG N7 N Y N 49
DG C5 C Y N 50
DG C6 C N N 51
DG O6 O N N 52
DG N1 N N N 53
DG C2 C N N 54
DG N2 N N N 55
DG N3 N N N 56
DG C4 C Y N 57
DG HOP3 H N N 58
DG HOP2 H N N 59
DG "H5'" H N N 60
DG "H5''" H N N 61
DG "H4'" H N N 62
DG "H3'" H N N 63
DG "HO3'" H N N 64
DG "H2'" H N N 65
DG "H2''" H N N 66
DG "H1'" H N N 67
DG H8 H N N 68
DG H1 H N N 69
DG H21 H N N 70
DG H22 H N N 71
HOH O O N N 72
HOH H1 H N N 73
HOH H2 H N N 74
MG MG MG N N 75
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DC OP3 P sing N N 1
DC OP3 HOP3 sing N N 2
DC P OP1 doub N N 3
DC P OP2 sing N N 4
DC P "O5'" sing N N 5
DC OP2 HOP2 sing N N 6
DC "O5'" "C5'" sing N N 7
DC "C5'" "C4'" sing N N 8
DC "C5'" "H5'" sing N N 9
DC "C5'" "H5''" sing N N 10
DC "C4'" "O4'" sing N N 11
DC "C4'" "C3'" sing N N 12
DC "C4'" "H4'" sing N N 13
DC "O4'" "C1'" sing N N 14
DC "C3'" "O3'" sing N N 15
DC "C3'" "C2'" sing N N 16
DC "C3'" "H3'" sing N N 17
DC "O3'" "HO3'" sing N N 18
DC "C2'" "C1'" sing N N 19
DC "C2'" "H2'" sing N N 20
DC "C2'" "H2''" sing N N 21
DC "C1'" N1 sing N N 22
DC "C1'" "H1'" sing N N 23
DC N1 C2 sing N N 24
DC N1 C6 sing N N 25
DC C2 O2 doub N N 26
DC C2 N3 sing N N 27
DC N3 C4 doub N N 28
DC C4 N4 sing N N 29
DC C4 C5 sing N N 30
DC N4 H41 sing N N 31
DC N4 H42 sing N N 32
DC C5 C6 doub N N 33
DC C5 H5 sing N N 34
DC C6 H6 sing N N 35
DG OP3 P sing N N 36
DG OP3 HOP3 sing N N 37
DG P OP1 doub N N 38
DG P OP2 sing N N 39
DG P "O5'" sing N N 40
DG OP2 HOP2 sing N N 41
DG "O5'" "C5'" sing N N 42
DG "C5'" "C4'" sing N N 43
DG "C5'" "H5'" sing N N 44
DG "C5'" "H5''" sing N N 45
DG "C4'" "O4'" sing N N 46
DG "C4'" "C3'" sing N N 47
DG "C4'" "H4'" sing N N 48
DG "O4'" "C1'" sing N N 49
DG "C3'" "O3'" sing N N 50
DG "C3'" "C2'" sing N N 51
DG "C3'" "H3'" sing N N 52
DG "O3'" "HO3'" sing N N 53
DG "C2'" "C1'" sing N N 54
DG "C2'" "H2'" sing N N 55
DG "C2'" "H2''" sing N N 56
DG "C1'" N9 sing N N 57
DG "C1'" "H1'" sing N N 58
DG N9 C8 sing Y N 59
DG N9 C4 sing Y N 60
DG C8 N7 doub Y N 61
DG C8 H8 sing N N 62
DG N7 C5 sing Y N 63
DG C5 C6 sing N N 64
DG C5 C4 doub Y N 65
DG C6 O6 doub N N 66
DG C6 N1 sing N N 67
DG N1 C2 sing N N 68
DG N1 H1 sing N N 69
DG C2 N2 sing N N 70
DG C2 N3 doub N N 71
DG N2 H21 sing N N 72
DG N2 H22 sing N N 73
DG N3 C4 sing N N 74
HOH O H1 sing N N 75
HOH O H2 sing N N 76
#
_ndb_struct_conf_na.entry_id 382D
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 10 11_555 0.251 -0.140 -0.045 2.225 -11.778 0.437 1 A_DC1:DG10_A A 1 ? A 10 ? 19 1
1 A DC 2 1_555 A DG 9 11_555 0.076 -0.169 0.124 5.339 -13.016 3.655 2 A_DC2:DG9_A A 2 ? A 9 ? 19 1
1 A DG 3 1_555 A DC 8 11_555 -0.325 -0.181 0.277 3.973 -7.630 3.764 3 A_DG3:DC8_A A 3 ? A 8 ? 19 1
1 A DC 4 1_555 A DG 7 11_555 0.298 -0.291 0.180 0.121 -14.816 2.986 4 A_DC4:DG7_A A 4 ? A 7 ? 19 1
1 A DC 5 1_555 A DG 6 11_555 0.336 -0.080 0.298 -1.868 -11.236 3.213 5 A_DC5:DG6_A A 5 ? A 6 ? 19 1
1 A DG 6 1_555 A DC 5 11_555 -0.336 -0.080 0.298 1.868 -11.236 3.213 6 A_DG6:DC5_A A 6 ? A 5 ? 19 1
1 A DG 7 1_555 A DC 4 11_555 -0.298 -0.291 0.180 -0.121 -14.816 2.986 7 A_DG7:DC4_A A 7 ? A 4 ? 19 1
1 A DC 8 1_555 A DG 3 11_555 0.325 -0.181 0.277 -3.973 -7.630 3.764 8 A_DC8:DG3_A A 8 ? A 3 ? 19 1
1 A DG 9 1_555 A DC 2 11_555 -0.076 -0.169 0.124 -5.339 -13.016 3.655 9 A_DG9:DC2_A A 9 ? A 2 ? 19 1
1 A DG 10 1_555 A DC 1 11_555 -0.251 -0.140 -0.045 -2.225 -11.778 0.437 10 A_DG10:DC1_A A 10 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 10 11_555 A DC 2 1_555 A DG 9 11_555 -0.187 -1.476 3.320 -2.568 9.730 31.416 -4.181 -0.087 2.758 17.418
4.597 32.950 1 AA_DC1DC2:DG9DG10_AA A 1 ? A 10 ? A 2 ? A 9 ?
1 A DC 2 1_555 A DG 9 11_555 A DG 3 1_555 A DC 8 11_555 -0.552 -1.841 3.161 -4.703 8.717 25.973 -5.710 0.140 2.485 18.558
10.013 27.767 2 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ?
1 A DG 3 1_555 A DC 8 11_555 A DC 4 1_555 A DG 7 11_555 -0.242 -1.296 3.359 0.956 9.478 34.731 -3.417 0.525 2.910 15.519
-1.565 35.975 3 AA_DG3DC4:DG7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ?
1 A DC 4 1_555 A DG 7 11_555 A DC 5 1_555 A DG 6 11_555 0.184 -1.347 3.249 -0.481 8.219 35.026 -3.293 -0.363 2.867 13.428
0.786 35.951 4 AA_DC4DC5:DG6DG7_AA A 4 ? A 7 ? A 5 ? A 6 ?
1 A DC 5 1_555 A DG 6 11_555 A DG 6 1_555 A DC 5 11_555 0.000 -1.822 2.947 0.000 10.737 24.189 -6.231 0.000 1.972 24.156
0.000 26.432 5 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ?
1 A DG 6 1_555 A DC 5 11_555 A DG 7 1_555 A DC 4 11_555 -0.184 -1.347 3.249 0.481 8.219 35.026 -3.293 0.363 2.867 13.428
-0.786 35.951 6 AA_DG6DG7:DC4DC5_AA A 6 ? A 5 ? A 7 ? A 4 ?
1 A DG 7 1_555 A DC 4 11_555 A DC 8 1_555 A DG 3 11_555 0.242 -1.296 3.359 -0.956 9.478 34.731 -3.417 -0.525 2.910 15.519
1.565 35.975 7 AA_DG7DC8:DG3DC4_AA A 7 ? A 4 ? A 8 ? A 3 ?
1 A DC 8 1_555 A DG 3 11_555 A DG 9 1_555 A DC 2 11_555 0.552 -1.841 3.161 4.703 8.717 25.973 -5.710 -0.140 2.485 18.558
-10.013 27.767 8 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ?
1 A DG 9 1_555 A DC 2 11_555 A DG 10 1_555 A DC 1 11_555 0.187 -1.476 3.320 2.568 9.730 31.416 -4.181 0.087 2.758 17.418
-4.597 32.950 9 AA_DG9DG10:DC1DC2_AA A 9 ? A 2 ? A 10 ? A 1 ?
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'in silico model'
_pdbx_initial_refinement_model.source_name Other
_pdbx_initial_refinement_model.details 'Standard 7 amino acid helix'
#
_atom_sites.entry_id 382D
_atom_sites.fract_transf_matrix[1][1] 0.024096
_atom_sites.fract_transf_matrix[1][2] 0.013912
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.027824
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.017391
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
MG
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 4.204 46.474 22.305 1.00 24.70 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 4.317 47.908 22.268 1.00 22.89 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 5.502 48.363 21.451 1.00 20.03 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 6.709 47.794 21.999 1.00 19.80 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 5.482 47.896 20.004 1.00 20.05 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 4.732 48.773 19.165 1.00 21.83 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 6.952 47.865 19.641 1.00 21.09 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 7.606 47.433 20.948 1.00 18.48 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 7.858 45.980 21.048 1.00 16.61 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 8.940 45.419 20.343 1.00 16.72 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 9.651 46.152 19.638 1.00 17.77 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 9.181 44.089 20.454 1.00 17.11 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 8.401 43.332 21.229 1.00 16.31 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 8.689 42.038 21.326 1.00 14.91 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 7.291 43.873 21.943 1.00 17.38 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 7.058 45.188 21.822 1.00 17.44 ? 1 DC A C6 1
ATOM 17 P P . DC A 1 2 ? 3.829 48.152 17.983 1.00 24.77 ? 2 DC A P 1
ATOM 18 O OP1 . DC A 1 2 ? 3.010 49.250 17.412 1.00 24.51 ? 2 DC A OP1 1
ATOM 19 O OP2 . DC A 1 2 ? 3.171 46.908 18.470 1.00 22.84 ? 2 DC A OP2 1
ATOM 20 O "O5'" . DC A 1 2 ? 4.888 47.723 16.882 1.00 23.33 ? 2 DC A "O5'" 1
ATOM 21 C "C5'" . DC A 1 2 ? 5.582 48.712 16.136 1.00 20.67 ? 2 DC A "C5'" 1
ATOM 22 C "C4'" . DC A 1 2 ? 6.608 48.062 15.242 1.00 20.75 ? 2 DC A "C4'" 1
ATOM 23 O "O4'" . DC A 1 2 ? 7.627 47.411 16.026 1.00 18.54 ? 2 DC A "O4'" 1
ATOM 24 C "C3'" . DC A 1 2 ? 6.094 46.964 14.328 1.00 21.90 ? 2 DC A "C3'" 1
ATOM 25 O "O3'" . DC A 1 2 ? 5.465 47.473 13.157 1.00 25.35 ? 2 DC A "O3'" 1
ATOM 26 C "C2'" . DC A 1 2 ? 7.360 46.210 13.998 1.00 19.06 ? 2 DC A "C2'" 1
ATOM 27 C "C1'" . DC A 1 2 ? 8.124 46.286 15.307 1.00 17.30 ? 2 DC A "C1'" 1
ATOM 28 N N1 . DC A 1 2 ? 7.882 45.090 16.114 1.00 16.30 ? 2 DC A N1 1
ATOM 29 C C2 . DC A 1 2 ? 8.672 43.974 15.881 1.00 17.41 ? 2 DC A C2 1
ATOM 30 O O2 . DC A 1 2 ? 9.553 44.044 15.005 1.00 19.15 ? 2 DC A O2 1
ATOM 31 N N3 . DC A 1 2 ? 8.460 42.852 16.605 1.00 12.85 ? 2 DC A N3 1
ATOM 32 C C4 . DC A 1 2 ? 7.500 42.828 17.529 1.00 11.78 ? 2 DC A C4 1
ATOM 33 N N4 . DC A 1 2 ? 7.335 41.709 18.228 1.00 14.65 ? 2 DC A N4 1
ATOM 34 C C5 . DC A 1 2 ? 6.672 43.954 17.779 1.00 11.39 ? 2 DC A C5 1
ATOM 35 C C6 . DC A 1 2 ? 6.898 45.056 17.063 1.00 14.13 ? 2 DC A C6 1
ATOM 36 P P . DG A 1 3 ? 4.445 46.536 12.355 1.00 21.34 ? 3 DG A P 1
ATOM 37 O OP1 . DG A 1 3 ? 3.792 47.370 11.321 1.00 23.02 ? 3 DG A OP1 1
ATOM 38 O OP2 . DG A 1 3 ? 3.623 45.817 13.359 1.00 23.06 ? 3 DG A OP2 1
ATOM 39 O "O5'" . DG A 1 3 ? 5.407 45.502 11.632 1.00 19.91 ? 3 DG A "O5'" 1
ATOM 40 C "C5'" . DG A 1 3 ? 6.338 45.954 10.650 1.00 16.65 ? 3 DG A "C5'" 1
ATOM 41 C "C4'" . DG A 1 3 ? 7.167 44.797 10.149 1.00 18.22 ? 3 DG A "C4'" 1
ATOM 42 O "O4'" . DG A 1 3 ? 7.992 44.279 11.212 1.00 18.83 ? 3 DG A "O4'" 1
ATOM 43 C "C3'" . DG A 1 3 ? 6.376 43.594 9.661 1.00 18.49 ? 3 DG A "C3'" 1
ATOM 44 O "O3'" . DG A 1 3 ? 5.954 43.774 8.310 1.00 22.12 ? 3 DG A "O3'" 1
ATOM 45 C "C2'" . DG A 1 3 ? 7.388 42.474 9.796 1.00 19.87 ? 3 DG A "C2'" 1
ATOM 46 C "C1'" . DG A 1 3 ? 8.160 42.875 11.049 1.00 18.07 ? 3 DG A "C1'" 1
ATOM 47 N N9 . DG A 1 3 ? 7.648 42.215 12.245 1.00 15.84 ? 3 DG A N9 1
ATOM 48 C C8 . DG A 1 3 ? 6.815 42.735 13.202 1.00 16.41 ? 3 DG A C8 1
ATOM 49 N N7 . DG A 1 3 ? 6.524 41.881 14.146 1.00 14.09 ? 3 DG A N7 1
ATOM 50 C C5 . DG A 1 3 ? 7.211 40.731 13.791 1.00 13.23 ? 3 DG A C5 1
ATOM 51 C C6 . DG A 1 3 ? 7.285 39.474 14.430 1.00 13.08 ? 3 DG A C6 1
ATOM 52 O O6 . DG A 1 3 ? 6.747 39.114 15.479 1.00 13.87 ? 3 DG A O6 1
ATOM 53 N N1 . DG A 1 3 ? 8.088 38.586 13.722 1.00 13.14 ? 3 DG A N1 1
ATOM 54 C C2 . DG A 1 3 ? 8.735 38.874 12.543 1.00 15.16 ? 3 DG A C2 1
ATOM 55 N N2 . DG A 1 3 ? 9.455 37.886 11.985 1.00 12.08 ? 3 DG A N2 1
ATOM 56 N N3 . DG A 1 3 ? 8.681 40.048 11.945 1.00 17.06 ? 3 DG A N3 1
ATOM 57 C C4 . DG A 1 3 ? 7.907 40.922 12.618 1.00 16.28 ? 3 DG A C4 1
ATOM 58 P P . DC A 1 4 ? 4.560 43.152 7.824 1.00 21.22 ? 4 DC A P 1
ATOM 59 O OP1 . DC A 1 4 ? 4.184 43.813 6.556 1.00 21.80 ? 4 DC A OP1 1
ATOM 60 O OP2 . DC A 1 4 ? 3.614 43.168 8.963 1.00 26.06 ? 4 DC A OP2 1
ATOM 61 O "O5'" . DC A 1 4 ? 4.927 41.640 7.515 1.00 18.90 ? 4 DC A "O5'" 1
ATOM 62 C "C5'" . DC A 1 4 ? 6.031 41.309 6.679 1.00 16.17 ? 4 DC A "C5'" 1
ATOM 63 C "C4'" . DC A 1 4 ? 6.371 39.851 6.850 1.00 18.54 ? 4 DC A "C4'" 1
ATOM 64 O "O4'" . DC A 1 4 ? 6.974 39.605 8.140 1.00 14.32 ? 4 DC A "O4'" 1
ATOM 65 C "C3'" . DC A 1 4 ? 5.159 38.930 6.813 1.00 17.68 ? 4 DC A "C3'" 1
ATOM 66 O "O3'" . DC A 1 4 ? 4.779 38.635 5.474 1.00 22.62 ? 4 DC A "O3'" 1
ATOM 67 C "C2'" . DC A 1 4 ? 5.654 37.707 7.555 1.00 16.76 ? 4 DC A "C2'" 1
ATOM 68 C "C1'" . DC A 1 4 ? 6.584 38.308 8.607 1.00 15.91 ? 4 DC A "C1'" 1
ATOM 69 N N1 . DC A 1 4 ? 5.932 38.464 9.917 1.00 15.43 ? 4 DC A N1 1
ATOM 70 C C2 . DC A 1 4 ? 5.908 37.369 10.787 1.00 14.50 ? 4 DC A C2 1
ATOM 71 O O2 . DC A 1 4 ? 6.450 36.317 10.438 1.00 15.66 ? 4 DC A O2 1
ATOM 72 N N3 . DC A 1 4 ? 5.292 37.488 11.983 1.00 14.86 ? 4 DC A N3 1
ATOM 73 C C4 . DC A 1 4 ? 4.713 38.639 12.317 1.00 13.48 ? 4 DC A C4 1
ATOM 74 N N4 . DC A 1 4 ? 4.093 38.706 13.492 1.00 12.72 ? 4 DC A N4 1
ATOM 75 C C5 . DC A 1 4 ? 4.735 39.771 11.457 1.00 11.11 ? 4 DC A C5 1
ATOM 76 C C6 . DC A 1 4 ? 5.350 39.641 10.278 1.00 12.42 ? 4 DC A C6 1
ATOM 77 P P . DC A 1 5 ? 3.298 38.098 5.172 1.00 25.06 ? 5 DC A P 1
ATOM 78 O OP1 . DC A 1 5 ? 3.202 37.913 3.710 1.00 26.82 ? 5 DC A OP1 1
ATOM 79 O OP2 . DC A 1 5 ? 2.313 38.957 5.876 1.00 25.88 ? 5 DC A OP2 1
ATOM 80 O "O5'" . DC A 1 5 ? 3.278 36.663 5.854 1.00 24.94 ? 5 DC A "O5'" 1
ATOM 81 C "C5'" . DC A 1 5 ? 4.225 35.650 5.474 1.00 21.63 ? 5 DC A "C5'" 1
ATOM 82 C "C4'" . DC A 1 5 ? 4.011 34.400 6.296 1.00 18.40 ? 5 DC A "C4'" 1
ATOM 83 O "O4'" . DC A 1 5 ? 4.478 34.547 7.653 1.00 17.57 ? 5 DC A "O4'" 1
ATOM 84 C "C3'" . DC A 1 5 ? 2.551 34.016 6.441 1.00 18.95 ? 5 DC A "C3'" 1
ATOM 85 O "O3'" . DC A 1 5 ? 2.114 33.304 5.300 1.00 22.10 ? 5 DC A "O3'" 1
ATOM 86 C "C2'" . DC A 1 5 ? 2.548 33.174 7.700 1.00 18.61 ? 5 DC A "C2'" 1
ATOM 87 C "C1'" . DC A 1 5 ? 3.613 33.849 8.552 1.00 17.00 ? 5 DC A "C1'" 1
ATOM 88 N N1 . DC A 1 5 ? 3.060 34.831 9.505 1.00 14.39 ? 5 DC A N1 1
ATOM 89 C C2 . DC A 1 5 ? 2.703 34.395 10.781 1.00 16.35 ? 5 DC A C2 1
ATOM 90 O O2 . DC A 1 5 ? 2.815 33.193 11.059 1.00 17.92 ? 5 DC A O2 1
ATOM 91 N N3 . DC A 1 5 ? 2.233 35.292 11.682 1.00 19.46 ? 5 DC A N3 1
ATOM 92 C C4 . DC A 1 5 ? 2.101 36.575 11.340 1.00 15.62 ? 5 DC A C4 1
ATOM 93 N N4 . DC A 1 5 ? 1.654 37.423 12.272 1.00 12.36 ? 5 DC A N4 1
ATOM 94 C C5 . DC A 1 5 ? 2.428 37.045 10.034 1.00 14.42 ? 5 DC A C5 1
ATOM 95 C C6 . DC A 1 5 ? 2.903 36.146 9.156 1.00 12.90 ? 5 DC A C6 1
ATOM 96 P P . DG A 1 6 ? 0.562 33.021 5.110 1.00 24.86 ? 6 DG A P 1
ATOM 97 O OP1 . DG A 1 6 ? 0.411 32.311 3.817 1.00 27.85 ? 6 DG A OP1 1
ATOM 98 O OP2 . DG A 1 6 ? -0.183 34.280 5.362 1.00 25.16 ? 6 DG A OP2 1
ATOM 99 O "O5'" . DG A 1 6 ? 0.242 32.000 6.284 1.00 25.30 ? 6 DG A "O5'" 1
ATOM 100 C "C5'" . DG A 1 6 ? -1.058 31.937 6.862 1.00 19.50 ? 6 DG A "C5'" 1
ATOM 101 C "C4'" . DG A 1 6 ? -1.064 30.978 8.026 1.00 16.49 ? 6 DG A "C4'" 1
ATOM 102 O "O4'" . DG A 1 6 ? -0.116 31.418 9.017 1.00 12.62 ? 6 DG A "O4'" 1
ATOM 103 C "C3'" . DG A 1 6 ? -2.404 30.940 8.744 1.00 18.68 ? 6 DG A "C3'" 1
ATOM 104 O "O3'" . DG A 1 6 ? -3.259 29.964 8.137 1.00 22.89 ? 6 DG A "O3'" 1
ATOM 105 C "C2'" . DG A 1 6 ? -2.014 30.571 10.159 1.00 16.35 ? 6 DG A "C2'" 1
ATOM 106 C "C1'" . DG A 1 6 ? -0.675 31.286 10.319 1.00 15.04 ? 6 DG A "C1'" 1
ATOM 107 N N9 . DG A 1 6 ? -0.825 32.632 10.864 1.00 13.25 ? 6 DG A N9 1
ATOM 108 C C8 . DG A 1 6 ? -0.665 33.811 10.178 1.00 11.62 ? 6 DG A C8 1
ATOM 109 N N7 . DG A 1 6 ? -0.865 34.865 10.920 1.00 13.08 ? 6 DG A N7 1
ATOM 110 C C5 . DG A 1 6 ? -1.167 34.353 12.177 1.00 11.58 ? 6 DG A C5 1
ATOM 111 C C6 . DG A 1 6 ? -1.463 35.022 13.397 1.00 11.83 ? 6 DG A C6 1
ATOM 112 O O6 . DG A 1 6 ? -1.491 36.240 13.626 1.00 12.63 ? 6 DG A O6 1
ATOM 113 N N1 . DG A 1 6 ? -1.735 34.123 14.419 1.00 7.48 ? 6 DG A N1 1
ATOM 114 C C2 . DG A 1 6 ? -1.716 32.762 14.290 1.00 9.48 ? 6 DG A C2 1
ATOM 115 N N2 . DG A 1 6 ? -2.011 32.069 15.394 1.00 9.05 ? 6 DG A N2 1
ATOM 116 N N3 . DG A 1 6 ? -1.426 32.125 13.167 1.00 8.12 ? 6 DG A N3 1
ATOM 117 C C4 . DG A 1 6 ? -1.162 32.977 12.157 1.00 10.77 ? 6 DG A C4 1
ATOM 118 P P . DG A 1 7 ? -4.847 30.218 8.066 1.00 18.75 ? 7 DG A P 1
ATOM 119 O OP1 . DG A 1 7 ? -5.407 29.099 7.264 1.00 26.93 ? 7 DG A OP1 1
ATOM 120 O OP2 . DG A 1 7 ? -5.122 31.628 7.667 1.00 20.25 ? 7 DG A OP2 1
ATOM 121 O "O5'" . DG A 1 7 ? -5.321 30.041 9.570 1.00 19.89 ? 7 DG A "O5'" 1
ATOM 122 C "C5'" . DG A 1 7 ? -5.150 28.792 10.256 1.00 18.84 ? 7 DG A "C5'" 1
ATOM 123 C "C4'" . DG A 1 7 ? -5.644 28.923 11.676 1.00 18.22 ? 7 DG A "C4'" 1
ATOM 124 O "O4'" . DG A 1 7 ? -4.733 29.746 12.425 1.00 17.45 ? 7 DG A "O4'" 1
ATOM 125 C "C3'" . DG A 1 7 ? -6.984 29.630 11.811 1.00 18.49 ? 7 DG A "C3'" 1
ATOM 126 O "O3'" . DG A 1 7 ? -8.074 28.743 11.639 1.00 23.72 ? 7 DG A "O3'" 1
ATOM 127 C "C2'" . DG A 1 7 ? -6.936 30.173 13.220 1.00 14.64 ? 7 DG A "C2'" 1
ATOM 128 C "C1'" . DG A 1 7 ? -5.465 30.529 13.370 1.00 16.20 ? 7 DG A "C1'" 1
ATOM 129 N N9 . DG A 1 7 ? -5.208 31.932 13.083 1.00 12.55 ? 7 DG A N9 1
ATOM 130 C C8 . DG A 1 7 ? -4.831 32.485 11.888 1.00 7.76 ? 7 DG A C8 1
ATOM 131 N N7 . DG A 1 7 ? -4.671 33.774 11.956 1.00 11.19 ? 7 DG A N7 1
ATOM 132 C C5 . DG A 1 7 ? -4.965 34.089 13.277 1.00 10.62 ? 7 DG A C5 1
ATOM 133 C C6 . DG A 1 7 ? -4.964 35.336 13.952 1.00 10.54 ? 7 DG A C6 1
ATOM 134 O O6 . DG A 1 7 ? -4.687 36.452 13.501 1.00 11.91 ? 7 DG A O6 1
ATOM 135 N N1 . DG A 1 7 ? -5.333 35.198 15.289 1.00 10.30 ? 7 DG A N1 1
ATOM 136 C C2 . DG A 1 7 ? -5.658 34.011 15.898 1.00 8.61 ? 7 DG A C2 1
ATOM 137 N N2 . DG A 1 7 ? -5.982 34.060 17.199 1.00 7.14 ? 7 DG A N2 1
ATOM 138 N N3 . DG A 1 7 ? -5.661 32.852 15.278 1.00 12.30 ? 7 DG A N3 1
ATOM 139 C C4 . DG A 1 7 ? -5.304 32.964 13.979 1.00 10.23 ? 7 DG A C4 1
ATOM 140 P P . DC A 1 8 ? -9.476 29.326 11.151 1.00 26.20 ? 8 DC A P 1
ATOM 141 O OP1 . DC A 1 8 ? -10.399 28.171 11.051 1.00 29.17 ? 8 DC A OP1 1
ATOM 142 O OP2 . DC A 1 8 ? -9.239 30.190 9.975 1.00 26.17 ? 8 DC A OP2 1
ATOM 143 O "O5'" . DC A 1 8 ? -9.948 30.241 12.362 1.00 26.91 ? 8 DC A "O5'" 1
ATOM 144 C "C5'" . DC A 1 8 ? -10.188 29.668 13.653 1.00 26.20 ? 8 DC A "C5'" 1
ATOM 145 C "C4'" . DC A 1 8 ? -10.573 30.740 14.644 1.00 24.78 ? 8 DC A "C4'" 1
ATOM 146 O "O4'" . DC A 1 8 ? -9.446 31.587 14.964 1.00 22.86 ? 8 DC A "O4'" 1
ATOM 147 C "C3'" . DC A 1 8 ? -11.644 31.698 14.157 1.00 25.90 ? 8 DC A "C3'" 1
ATOM 148 O "O3'" . DC A 1 8 ? -12.948 31.141 14.298 1.00 29.85 ? 8 DC A "O3'" 1
ATOM 149 C "C2'" . DC A 1 8 ? -11.418 32.911 15.038 1.00 23.70 ? 8 DC A "C2'" 1
ATOM 150 C "C1'" . DC A 1 8 ? -9.904 32.909 15.227 1.00 20.51 ? 8 DC A "C1'" 1
ATOM 151 N N1 . DC A 1 8 ? -9.215 33.823 14.309 1.00 16.76 ? 8 DC A N1 1
ATOM 152 C C2 . DC A 1 8 ? -9.058 35.146 14.699 1.00 17.57 ? 8 DC A C2 1
ATOM 153 O O2 . DC A 1 8 ? -9.504 35.493 15.797 1.00 20.80 ? 8 DC A O2 1
ATOM 154 N N3 . DC A 1 8 ? -8.432 36.020 13.880 1.00 18.02 ? 8 DC A N3 1
ATOM 155 C C4 . DC A 1 8 ? -7.975 35.606 12.701 1.00 19.12 ? 8 DC A C4 1
ATOM 156 N N4 . DC A 1 8 ? -7.366 36.507 11.925 1.00 18.97 ? 8 DC A N4 1
ATOM 157 C C5 . DC A 1 8 ? -8.125 34.248 12.266 1.00 17.81 ? 8 DC A C5 1
ATOM 158 C C6 . DC A 1 8 ? -8.746 33.400 13.098 1.00 16.21 ? 8 DC A C6 1
ATOM 159 P P . DG A 1 9 ? -14.189 31.845 13.555 1.00 32.63 ? 9 DG A P 1
ATOM 160 O OP1 . DG A 1 9 ? -15.362 30.958 13.749 1.00 34.19 ? 9 DG A OP1 1
ATOM 161 O OP2 . DG A 1 9 ? -13.810 32.280 12.187 1.00 30.18 ? 9 DG A OP2 1
ATOM 162 O "O5'" . DG A 1 9 ? -14.410 33.143 14.433 1.00 32.01 ? 9 DG A "O5'" 1
ATOM 163 C "C5'" . DG A 1 9 ? -14.793 34.368 13.844 1.00 29.20 ? 9 DG A "C5'" 1
ATOM 164 C "C4'" . DG A 1 9 ? -14.545 35.489 14.822 1.00 29.04 ? 9 DG A "C4'" 1
ATOM 165 O "O4'" . DG A 1 9 ? -13.128 35.696 14.992 1.00 25.74 ? 9 DG A "O4'" 1
ATOM 166 C "C3'" . DG A 1 9 ? -15.081 36.823 14.337 1.00 28.16 ? 9 DG A "C3'" 1
ATOM 167 O "O3'" . DG A 1 9 ? -16.453 36.937 14.691 1.00 32.38 ? 9 DG A "O3'" 1
ATOM 168 C "C2'" . DG A 1 9 ? -14.184 37.827 15.029 1.00 24.67 ? 9 DG A "C2'" 1
ATOM 169 C "C1'" . DG A 1 9 ? -12.844 37.095 15.046 1.00 22.47 ? 9 DG A "C1'" 1
ATOM 170 N N9 . DG A 1 9 ? -12.019 37.409 13.889 1.00 15.73 ? 9 DG A N9 1
ATOM 171 C C8 . DG A 1 9 ? -11.720 36.569 12.848 1.00 15.51 ? 9 DG A C8 1
ATOM 172 N N7 . DG A 1 9 ? -10.954 37.120 11.950 1.00 15.49 ? 9 DG A N7 1
ATOM 173 C C5 . DG A 1 9 ? -10.733 38.397 12.428 1.00 10.70 ? 9 DG A C5 1
ATOM 174 C C6 . DG A 1 9 ? -9.963 39.448 11.890 1.00 11.59 ? 9 DG A C6 1
ATOM 175 O O6 . DG A 1 9 ? -9.296 39.457 10.845 1.00 10.94 ? 9 DG A O6 1
ATOM 176 N N1 . DG A 1 9 ? -10.008 40.578 12.701 1.00 10.48 ? 9 DG A N1 1
ATOM 177 C C2 . DG A 1 9 ? -10.707 40.675 13.883 1.00 13.03 ? 9 DG A C2 1
ATOM 178 N N2 . DG A 1 9 ? -10.634 41.846 14.533 1.00 14.06 ? 9 DG A N2 1
ATOM 179 N N3 . DG A 1 9 ? -11.426 39.692 14.396 1.00 15.07 ? 9 DG A N3 1
ATOM 180 C C4 . DG A 1 9 ? -11.391 38.591 13.623 1.00 12.73 ? 9 DG A C4 1
ATOM 181 P P . DG A 1 10 ? -17.469 37.618 13.665 1.00 36.84 ? 10 DG A P 1
ATOM 182 O OP1 . DG A 1 10 ? -18.831 37.473 14.254 1.00 40.69 ? 10 DG A OP1 1
ATOM 183 O OP2 . DG A 1 10 ? -17.202 37.114 12.292 1.00 34.65 ? 10 DG A OP2 1
ATOM 184 O "O5'" . DG A 1 10 ? -17.036 39.144 13.755 1.00 35.55 ? 10 DG A "O5'" 1
ATOM 185 C "C5'" . DG A 1 10 ? -16.733 39.709 15.037 1.00 32.21 ? 10 DG A "C5'" 1
ATOM 186 C "C4'" . DG A 1 10 ? -16.366 41.165 14.901 1.00 31.71 ? 10 DG A "C4'" 1
ATOM 187 O "O4'" . DG A 1 10 ? -15.053 41.281 14.300 1.00 29.26 ? 10 DG A "O4'" 1
ATOM 188 C "C3'" . DG A 1 10 ? -17.324 41.965 14.019 1.00 32.68 ? 10 DG A "C3'" 1
ATOM 189 O "O3'" . DG A 1 10 ? -17.244 43.350 14.371 1.00 39.17 ? 10 DG A "O3'" 1
ATOM 190 C "C2'" . DG A 1 10 ? -16.599 41.996 12.688 1.00 30.37 ? 10 DG A "C2'" 1
ATOM 191 C "C1'" . DG A 1 10 ? -15.140 42.053 13.121 1.00 25.76 ? 10 DG A "C1'" 1
ATOM 192 N N9 . DG A 1 10 ? -14.222 41.495 12.137 1.00 25.16 ? 10 DG A N9 1
ATOM 193 C C8 . DG A 1 10 ? -14.231 40.225 11.605 1.00 22.75 ? 10 DG A C8 1
ATOM 194 N N7 . DG A 1 10 ? -13.353 40.065 10.651 1.00 20.92 ? 10 DG A N7 1
ATOM 195 C C5 . DG A 1 10 ? -12.707 41.296 10.565 1.00 21.19 ? 10 DG A C5 1
ATOM 196 C C6 . DG A 1 10 ? -11.682 41.741 9.685 1.00 19.80 ? 10 DG A C6 1
ATOM 197 O O6 . DG A 1 10 ? -11.144 41.131 8.754 1.00 21.49 ? 10 DG A O6 1
ATOM 198 N N1 . DG A 1 10 ? -11.305 43.051 9.960 1.00 18.22 ? 10 DG A N1 1
ATOM 199 C C2 . DG A 1 10 ? -11.848 43.839 10.942 1.00 18.78 ? 10 DG A C2 1
ATOM 200 N N2 . DG A 1 10 ? -11.328 45.069 11.061 1.00 16.79 ? 10 DG A N2 1
ATOM 201 N N3 . DG A 1 10 ? -12.822 43.448 11.749 1.00 19.03 ? 10 DG A N3 1
ATOM 202 C C4 . DG A 1 10 ? -13.202 42.175 11.503 1.00 22.23 ? 10 DG A C4 1
HETATM 203 MG MG . MG B 2 . ? 2.751 38.917 17.952 1.00 40.29 ? 11 MG A MG 1
HETATM 204 O O . HOH C 3 . ? 2.435 40.929 14.199 1.00 33.76 ? 12 HOH A O 1
HETATM 205 O O . HOH C 3 . ? -0.532 40.312 17.313 1.00 32.28 ? 13 HOH A O 1
HETATM 206 O O . HOH C 3 . ? 7.122 38.244 19.643 1.00 31.08 ? 14 HOH A O 1
HETATM 207 O O . HOH C 3 . ? 8.212 38.558 23.289 1.00 40.46 ? 15 HOH A O 1
HETATM 208 O O . HOH C 3 . ? 6.614 40.498 22.533 1.00 59.64 ? 16 HOH A O 1
HETATM 209 O O . HOH C 3 . ? 4.194 42.389 15.704 1.00 33.47 ? 17 HOH A O 1
HETATM 210 O O . HOH C 3 . ? -1.044 29.536 13.554 1.00 16.23 ? 18 HOH A O 1
HETATM 211 O O . HOH C 3 . ? -0.036 48.634 14.324 0.5 45.36 ? 19 HOH A O 1
HETATM 212 O O . HOH C 3 . ? 0.233 37.529 21.796 1.00 39.35 ? 20 HOH A O 1
HETATM 213 O O . HOH C 3 . ? 2.775 43.067 11.262 1.00 24.77 ? 21 HOH A O 1
HETATM 214 O O . HOH C 3 . ? -2.498 27.264 12.091 1.00 25.58 ? 22 HOH A O 1
HETATM 215 O O . HOH C 3 . ? 3.955 42.000 19.550 1.00 42.90 ? 23 HOH A O 1
HETATM 216 O O . HOH C 3 . ? 2.362 40.400 8.873 1.00 31.21 ? 24 HOH A O 1
HETATM 217 O O . HOH C 3 . ? 1.560 42.060 4.876 1.00 21.41 ? 25 HOH A O 1
HETATM 218 O O . HOH C 3 . ? 10.777 41.776 0.944 1.00 57.27 ? 26 HOH A O 1
HETATM 219 O O . HOH C 3 . ? 3.010 51.187 9.029 1.00 66.54 ? 27 HOH A O 1
HETATM 220 O O . HOH C 3 . ? 3.189 32.233 2.178 1.00 43.59 ? 28 HOH A O 1
HETATM 221 O O . HOH C 3 . ? 0.470 44.196 9.161 1.00 37.16 ? 29 HOH A O 1
HETATM 222 O O . HOH C 3 . ? 0.000 24.628 14.375 0.5 67.08 ? 30 HOH A O 1
HETATM 223 O O . HOH C 3 . ? 5.858 44.372 4.645 0.50 42.43 ? 31 HOH A O 1
HETATM 224 O O . HOH C 3 . ? -1.746 26.958 9.304 1.00 31.75 ? 32 HOH A O 1
HETATM 225 O O . HOH C 3 . ? 3.841 30.546 -1.942 1.00 57.63 ? 33 HOH A O 1
HETATM 226 O O . HOH C 3 . ? -4.067 30.788 3.491 1.00 59.37 ? 34 HOH A O 1
HETATM 227 O O . HOH C 3 . ? -11.123 38.432 8.269 1.00 37.61 ? 35 HOH A O 1
HETATM 228 O O . HOH C 3 . ? -10.236 33.467 8.202 1.00 54.77 ? 36 HOH A O 1
HETATM 229 O O . HOH C 3 . ? -12.829 29.411 10.428 1.00 50.28 ? 37 HOH A O 1
HETATM 230 O O . HOH C 3 . ? -12.567 46.653 18.319 1.00 62.08 ? 38 HOH A O 1
HETATM 231 O O . HOH C 3 . ? -17.201 49.553 17.005 1.00 43.15 ? 39 HOH A O 1
HETATM 232 O O . HOH C 3 . ? 16.500 37.982 6.902 1.00 35.64 ? 40 HOH A O 1
HETATM 233 O O . HOH C 3 . ? -7.361 35.048 9.154 1.00 34.35 ? 41 HOH A O 1
HETATM 234 O O . HOH C 3 . ? -9.212 31.425 5.993 1.00 50.39 ? 42 HOH A O 1
HETATM 235 O O . HOH C 3 . ? -10.316 36.125 9.408 1.00 64.12 ? 43 HOH A O 1
HETATM 236 O O . HOH C 3 . ? 1.886 38.712 16.152 1.00 24.79 ? 44 HOH A O 1
HETATM 237 O O . HOH C 3 . ? 4.045 36.798 17.870 1.00 33.08 ? 45 HOH A O 1
HETATM 238 O O . HOH C 3 . ? 1.360 37.274 19.141 1.00 40.11 ? 46 HOH A O 1
HETATM 239 O O . HOH C 3 . ? 1.699 40.441 18.386 1.00 35.18 ? 47 HOH A O 1
HETATM 240 O O . HOH C 3 . ? 3.772 38.773 19.781 1.00 46.56 ? 48 HOH A O 1
HETATM 241 O O . HOH C 3 . ? 4.914 39.871 17.043 1.00 23.02 ? 49 HOH A O 1
#