data_376D
#
_entry.id 376D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 376D pdb_0000376d 10.2210/pdb376d/pdb
RCSB UDIB70 ? ?
WWPDB D_1000178844 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1999-10-26
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-21
5 'Structure model' 1 4 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 5 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_conn
5 4 'Structure model' struct_site
6 5 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
4 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
5 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
6 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 376D
_pdbx_database_status.recvd_initial_deposition_date 1998-01-22
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Cruse, W.B.T.' 1
'Shepard, W.' 2
'Prange, T.' 3
'delalFortelle, E.' 4
'Fourme, R.' 5
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'A zipper-like duplex in DNA: the crystal structure of d(GCGAAAGCT) at 2.1 A resolution.'
Structure 6 849 861 1998 STRUE6 UK 0969-2126 2005 ? 9687367 '10.1016/S0969-2126(98)00087-2'
1 'RNA Tertiary Structure Mediation by Adenosine Platforms'
Science 273 1696 1699 1997 SCIEAS US 0036-8075 0038 ? ? ?
2 'Solution Structure of a Metal-binding Site in the Major Groove of RNA Complexed with Cobalt(III) Hexammine'
Structure 5 713 721 1997 STRUE6 UK 0969-2126 2005 ? ? ?
3 'Extraordinary Stable Structure of Short Single-Stranded DNA Fragments Containing a Specific Base Sequence: d(GCGAAAGC)'
'Nucleic Acids Res.' 17 2223 2231 1989 NARHAD UK 0305-1048 0389 ? ? ?
4 'Structural Basis for Stabilisation of Z-DNA by Cobalt Haxaammine and Magnesium Cations'
Biochemistry 24 237 240 1985 BICHAW US 0006-2960 0033 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Shepard, W.' 1 ?
primary 'Cruse, W.B.' 2 ?
primary 'Fourme, R.' 3 ?
primary 'de la Fortelle, E.' 4 ?
primary 'Prange, T.' 5 ?
1 'Cate, J.H.' 6 ?
1 'Gooding, A.R.' 7 ?
1 'Podell, E.' 8 ?
1 'Zhou, K.' 9 ?
1 'Golden, B.L.' 10 ?
1 'Szewczak, A.A.' 11 ?
1 'Kundrot, C.E.' 12 ?
1 'Cech, T.R.' 13 ?
1 'Doudna, J.A.' 14 ?
2 'Kieft, J.S.' 15 ?
2 'Tinoco Jr., I.' 16 ?
3 'Hirao, I.' 17 ?
3 'Nichimura, Y.' 18 ?
3 'Naraoka, T.' 19 ?
3 'Watanabe, K.' 20 ?
3 'Arata, Y.' 21 ?
3 'Miura, K.' 22 ?
4 'Geissner, R.V.' 23 ?
4 'Quigley, G.J.' 24 ?
4 'Wang, H.J.' 25 ?
4 'van der Marel, A.' 26 ?
4 'van Boom, J.H.' 27 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man
;DNA (5'-D(*GP*(CBR)P*GP*AP*AP*AP*GP*CP*T)-3')
;
2843.733 1 ? ? ? ?
2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 1 ? ? ? ?
3 water nat water 18.015 18 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(CBR)(DG)(DA)(DA)(DA)(DG)(DC)(DT)'
_entity_poly.pdbx_seq_one_letter_code_can GCGAAAGCT
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'COBALT HEXAMMINE(III)' NCO
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 CBR n
1 3 DG n
1 4 DA n
1 5 DA n
1 6 DA n
1 7 DG n
1 8 DC n
1 9 DT n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 CBR 2 2 2 CBR BRO A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 DA 4 4 4 DA A A . n
A 1 5 DA 5 5 5 DA A A . n
A 1 6 DA 6 6 6 DA A A . n
A 1 7 DG 7 7 7 DG G A . n
A 1 8 DC 8 8 8 DC C A . n
A 1 9 DT 9 9 9 DT T A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NCO 1 10 10 NCO NCO A .
C 3 HOH 1 11 11 HOH HOH A .
C 3 HOH 2 12 12 HOH HOH A .
C 3 HOH 3 13 13 HOH HOH A .
C 3 HOH 4 14 14 HOH HOH A .
C 3 HOH 5 15 15 HOH HOH A .
C 3 HOH 6 16 16 HOH HOH A .
C 3 HOH 7 17 17 HOH HOH A .
C 3 HOH 8 18 18 HOH HOH A .
C 3 HOH 9 19 19 HOH HOH A .
C 3 HOH 10 20 20 HOH HOH A .
C 3 HOH 11 21 21 HOH HOH A .
C 3 HOH 12 22 22 HOH HOH A .
C 3 HOH 13 23 23 HOH HOH A .
C 3 HOH 14 24 24 HOH HOH A .
C 3 HOH 15 25 25 HOH HOH A .
C 3 HOH 16 26 26 HOH HOH A .
C 3 HOH 17 27 27 HOH HOH A .
C 3 HOH 18 28 28 HOH HOH A .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 N 1 A NCO 10 ? N3 ? B NCO 1 N3
2 1 N 1 A NCO 10 ? N4 ? B NCO 1 N4
3 1 N 1 A NCO 10 ? N5 ? B NCO 1 N5
4 1 N 1 A NCO 10 ? N6 ? B NCO 1 N6
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
MADLSQ 'model building' '+ CCP4 PACKAGE' ? 1
X-PLOR refinement . ? 2
MOSFLM 'data reduction' . ? 3
CCP4 'data scaling' '(SCALA)' ? 4
MADLSQ phasing . ? 5
CCP4 phasing . ? 6
#
_cell.entry_id 376D
_cell.length_a 37.560
_cell.length_b 37.560
_cell.length_c 65.390
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 376D
_symmetry.space_group_name_H-M 'P 63 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting hexagonal
_symmetry.Int_Tables_number 182
#
_exptl.entry_id 376D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 3
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.30
_exptl_crystal.density_percent_sol 36.0000
_exptl_crystal.description ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 CACODYLATE ? ? ?
1 3 1 '[CO(NH3)6]3+' ? ? ?
1 4 1 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 276.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type MARRESEARCH
_diffrn_detector.pdbx_collection_date 1996-09-01
_diffrn_detector.details 'DOUBLE MONO + MULTILAYER FOCUS'
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'SI(III)'
_diffrn_radiation.pdbx_diffrn_protocol MAD
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'LURE BEAMLINE DW21B'
_diffrn_source.pdbx_synchrotron_site LURE
_diffrn_source.pdbx_synchrotron_beamline DW21B
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 376D
_reflns.observed_criterion_sigma_I 3.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 15.000
_reflns.d_resolution_high 2.100
_reflns.number_obs 1832
_reflns.number_all ?
_reflns.percent_possible_obs 95.000
_reflns.pdbx_Rmerge_I_obs 0.053
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 11.3000
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 2.100
_reflns_shell.d_res_low ?
_reflns_shell.percent_possible_all 61.00
_reflns_shell.Rmerge_I_obs 0.148
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 4.200
_reflns_shell.pdbx_redundancy ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 376D
_refine.ls_number_reflns_obs 1832
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 15.000
_refine.ls_d_res_high 2.100
_refine.ls_percent_reflns_obs 95.000
_refine.ls_R_factor_obs 0.189
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.189
_refine.ls_R_factor_R_free 0.241
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 10.000
_refine.ls_number_reflns_R_free 183
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model 'MANUALLY BUILT IN THE EXPERIMENTAL DENSITY'
_refine.pdbx_method_to_determine_struct 'MAD AT BROMINE EDGE'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 376D
_refine_analyze.Luzzati_coordinate_error_obs 0.15
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs 15.0
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 184
_refine_hist.pdbx_number_atoms_ligand 4
_refine_hist.number_atoms_solvent 18
_refine_hist.number_atoms_total 206
_refine_hist.d_res_high 2.100
_refine_hist.d_res_low 15.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d 0.023 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 2.30 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 376D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 376D
_struct.title 'A ZIPPER-LIKE DNA DUPLEX D(GCGAAAGCT)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 376D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, OVERHANGING BASE, MODIFIED, MISMATCHED, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 376D
_struct_ref.pdbx_db_accession 376D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 376D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 9
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 376D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 9
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 9
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5000000000 -0.8660254038 0.0000000000 18.7800000000 -0.8660254038
-0.5000000000 0.0000000000 32.5279141661 0.0000000000 0.0000000000 -1.0000000000 32.6950000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A CBR 2 P ? ? A DG 1 A CBR 2 1_555 ? ? ? ? ? ? ? 1.602 ? ?
covale2 covale both ? A CBR 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A CBR 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.612 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A CBR 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A CBR 2 A DG 7 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A CBR 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A CBR 2 A DG 7 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A CBR 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A CBR 2 A DG 7 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DA 6 N7 ? ? A DG 3 A DA 6 8_665 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog8 hydrog ? ? A DG 3 N3 ? ? ? 1_555 A DA 6 N6 ? ? A DG 3 A DA 6 8_665 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog9 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DG 3 N3 ? ? A DA 6 A DG 3 8_665 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog10 hydrog ? ? A DA 6 N7 ? ? ? 1_555 A DG 3 N2 ? ? A DA 6 A DG 3 8_665 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog11 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A CBR 2 N3 ? ? A DG 7 A CBR 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A CBR 2 O2 ? ? A DG 7 A CBR 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A CBR 2 N4 ? ? A DG 7 A CBR 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id NCO
_struct_site.pdbx_auth_seq_id 10
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 5
_struct_site.details 'BINDING SITE FOR RESIDUE NCO A 10'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 5 CBR A 2 ? CBR A 2 . ? 2_655 ?
2 AC1 5 DG A 3 ? DG A 3 . ? 1_555 ?
3 AC1 5 DG A 3 ? DG A 3 . ? 2_655 ?
4 AC1 5 HOH C . ? HOH A 14 . ? 1_555 ?
5 AC1 5 HOH C . ? HOH A 23 . ? 2_655 ?
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 C4
_pdbx_validate_rmsd_bond.auth_asym_id_1 A
_pdbx_validate_rmsd_bond.auth_comp_id_1 DT
_pdbx_validate_rmsd_bond.auth_seq_id_1 9
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 O4
_pdbx_validate_rmsd_bond.auth_asym_id_2 A
_pdbx_validate_rmsd_bond.auth_comp_id_2 DT
_pdbx_validate_rmsd_bond.auth_seq_id_2 9
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.336
_pdbx_validate_rmsd_bond.bond_target_value 1.228
_pdbx_validate_rmsd_bond.bond_deviation 0.108
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.009
_pdbx_validate_rmsd_bond.linker_flag N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.98 108.30 3.68 0.30 N
2 1 C6 A DG 1 ? ? N1 A DG 1 ? ? C2 A DG 1 ? ? 120.87 125.10 -4.23 0.60 N
3 1 N1 A DG 1 ? ? C2 A DG 1 ? ? N3 A DG 1 ? ? 127.96 123.90 4.06 0.60 N
4 1 N9 A DG 1 ? ? C4 A DG 1 ? ? C5 A DG 1 ? ? 108.00 105.40 2.60 0.40 N
5 1 N1 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 115.17 119.90 -4.73 0.60 N
6 1 "C3'" A DG 1 ? ? "O3'" A DG 1 ? ? P A CBR 2 ? ? 129.62 119.70 9.92 1.20 Y
7 1 "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? "C1'" A DG 3 ? ? 94.57 102.40 -7.83 0.80 N
8 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 117.13 108.30 8.83 0.30 N
9 1 C5 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 123.63 128.60 -4.97 0.60 N
10 1 N1 A DA 4 ? ? C2 A DA 4 ? ? N3 A DA 4 ? ? 125.57 129.30 -3.73 0.50 N
11 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.53 108.30 3.23 0.30 N
12 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 126.18 129.30 -3.12 0.50 N
13 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 124.93 129.30 -4.37 0.50 N
14 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.73 108.30 2.43 0.30 N
15 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 114.03 108.30 5.73 0.30 N
16 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.85 108.30 3.55 0.30 N
17 1 C2 A DT 9 ? ? N3 A DT 9 ? ? C4 A DT 9 ? ? 122.24 127.20 -4.96 0.60 N
18 1 N3 A DT 9 ? ? C4 A DT 9 ? ? C5 A DT 9 ? ? 119.59 115.20 4.39 0.60 N
#
_pdbx_struct_mod_residue.id 1
_pdbx_struct_mod_residue.label_asym_id A
_pdbx_struct_mod_residue.label_comp_id CBR
_pdbx_struct_mod_residue.label_seq_id 2
_pdbx_struct_mod_residue.auth_asym_id A
_pdbx_struct_mod_residue.auth_comp_id CBR
_pdbx_struct_mod_residue.auth_seq_id 2
_pdbx_struct_mod_residue.PDB_ins_code ?
_pdbx_struct_mod_residue.parent_comp_id DC
_pdbx_struct_mod_residue.details ?
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id NCO
_pdbx_struct_special_symmetry.auth_seq_id 10
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id B
_pdbx_struct_special_symmetry.label_comp_id NCO
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
CBR BR BR N N 1
CBR P P N N 2
CBR OP1 O N N 3
CBR OP2 O N N 4
CBR "O5'" O N N 5
CBR N1 N N N 6
CBR C6 C N N 7
CBR C2 C N N 8
CBR O2 O N N 9
CBR N3 N N N 10
CBR C4 C N N 11
CBR N4 N N N 12
CBR C5 C N N 13
CBR "C2'" C N N 14
CBR "C5'" C N N 15
CBR "C4'" C N R 16
CBR "O4'" O N N 17
CBR "C1'" C N R 18
CBR "C3'" C N S 19
CBR "O3'" O N N 20
CBR OP3 O N N 21
CBR HOP2 H N N 22
CBR H6 H N N 23
CBR H41 H N N 24
CBR H42 H N N 25
CBR "H2'" H N N 26
CBR "H2''" H N N 27
CBR "H5'" H N N 28
CBR "H5''" H N N 29
CBR "H4'" H N N 30
CBR "H1'" H N N 31
CBR "H3'" H N N 32
CBR "HO3'" H N N 33
CBR HOP3 H N N 34
DA OP3 O N N 35
DA P P N N 36
DA OP1 O N N 37
DA OP2 O N N 38
DA "O5'" O N N 39
DA "C5'" C N N 40
DA "C4'" C N R 41
DA "O4'" O N N 42
DA "C3'" C N S 43
DA "O3'" O N N 44
DA "C2'" C N N 45
DA "C1'" C N R 46
DA N9 N Y N 47
DA C8 C Y N 48
DA N7 N Y N 49
DA C5 C Y N 50
DA C6 C Y N 51
DA N6 N N N 52
DA N1 N Y N 53
DA C2 C Y N 54
DA N3 N Y N 55
DA C4 C Y N 56
DA HOP3 H N N 57
DA HOP2 H N N 58
DA "H5'" H N N 59
DA "H5''" H N N 60
DA "H4'" H N N 61
DA "H3'" H N N 62
DA "HO3'" H N N 63
DA "H2'" H N N 64
DA "H2''" H N N 65
DA "H1'" H N N 66
DA H8 H N N 67
DA H61 H N N 68
DA H62 H N N 69
DA H2 H N N 70
DC OP3 O N N 71
DC P P N N 72
DC OP1 O N N 73
DC OP2 O N N 74
DC "O5'" O N N 75
DC "C5'" C N N 76
DC "C4'" C N R 77
DC "O4'" O N N 78
DC "C3'" C N S 79
DC "O3'" O N N 80
DC "C2'" C N N 81
DC "C1'" C N R 82
DC N1 N N N 83
DC C2 C N N 84
DC O2 O N N 85
DC N3 N N N 86
DC C4 C N N 87
DC N4 N N N 88
DC C5 C N N 89
DC C6 C N N 90
DC HOP3 H N N 91
DC HOP2 H N N 92
DC "H5'" H N N 93
DC "H5''" H N N 94
DC "H4'" H N N 95
DC "H3'" H N N 96
DC "HO3'" H N N 97
DC "H2'" H N N 98
DC "H2''" H N N 99
DC "H1'" H N N 100
DC H41 H N N 101
DC H42 H N N 102
DC H5 H N N 103
DC H6 H N N 104
DG OP3 O N N 105
DG P P N N 106
DG OP1 O N N 107
DG OP2 O N N 108
DG "O5'" O N N 109
DG "C5'" C N N 110
DG "C4'" C N R 111
DG "O4'" O N N 112
DG "C3'" C N S 113
DG "O3'" O N N 114
DG "C2'" C N N 115
DG "C1'" C N R 116
DG N9 N Y N 117
DG C8 C Y N 118
DG N7 N Y N 119
DG C5 C Y N 120
DG C6 C N N 121
DG O6 O N N 122
DG N1 N N N 123
DG C2 C N N 124
DG N2 N N N 125
DG N3 N N N 126
DG C4 C Y N 127
DG HOP3 H N N 128
DG HOP2 H N N 129
DG "H5'" H N N 130
DG "H5''" H N N 131
DG "H4'" H N N 132
DG "H3'" H N N 133
DG "HO3'" H N N 134
DG "H2'" H N N 135
DG "H2''" H N N 136
DG "H1'" H N N 137
DG H8 H N N 138
DG H1 H N N 139
DG H21 H N N 140
DG H22 H N N 141
DT OP3 O N N 142
DT P P N N 143
DT OP1 O N N 144
DT OP2 O N N 145
DT "O5'" O N N 146
DT "C5'" C N N 147
DT "C4'" C N R 148
DT "O4'" O N N 149
DT "C3'" C N S 150
DT "O3'" O N N 151
DT "C2'" C N N 152
DT "C1'" C N R 153
DT N1 N N N 154
DT C2 C N N 155
DT O2 O N N 156
DT N3 N N N 157
DT C4 C N N 158
DT O4 O N N 159
DT C5 C N N 160
DT C7 C N N 161
DT C6 C N N 162
DT HOP3 H N N 163
DT HOP2 H N N 164
DT "H5'" H N N 165
DT "H5''" H N N 166
DT "H4'" H N N 167
DT "H3'" H N N 168
DT "HO3'" H N N 169
DT "H2'" H N N 170
DT "H2''" H N N 171
DT "H1'" H N N 172
DT H3 H N N 173
DT H71 H N N 174
DT H72 H N N 175
DT H73 H N N 176
DT H6 H N N 177
HOH O O N N 178
HOH H1 H N N 179
HOH H2 H N N 180
NCO CO CO N N 181
NCO N1 N N N 182
NCO N2 N N N 183
NCO N3 N N N 184
NCO N4 N N N 185
NCO N5 N N N 186
NCO N6 N N N 187
NCO HN11 H N N 188
NCO HN12 H N N 189
NCO HN13 H N N 190
NCO HN21 H N N 191
NCO HN22 H N N 192
NCO HN23 H N N 193
NCO HN31 H N N 194
NCO HN32 H N N 195
NCO HN33 H N N 196
NCO HN41 H N N 197
NCO HN42 H N N 198
NCO HN43 H N N 199
NCO HN51 H N N 200
NCO HN52 H N N 201
NCO HN53 H N N 202
NCO HN61 H N N 203
NCO HN62 H N N 204
NCO HN63 H N N 205
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CBR BR C5 sing N N 1
CBR P OP1 doub N N 2
CBR P OP2 sing N N 3
CBR P "O5'" sing N N 4
CBR P OP3 sing N N 5
CBR OP2 HOP2 sing N N 6
CBR "O5'" "C5'" sing N N 7
CBR N1 C6 sing N N 8
CBR N1 C2 sing N N 9
CBR N1 "C1'" sing N N 10
CBR C6 C5 doub N N 11
CBR C6 H6 sing N N 12
CBR C2 O2 doub N N 13
CBR C2 N3 sing N N 14
CBR N3 C4 doub N N 15
CBR C4 N4 sing N N 16
CBR C4 C5 sing N N 17
CBR N4 H41 sing N N 18
CBR N4 H42 sing N N 19
CBR "C2'" "C1'" sing N N 20
CBR "C2'" "C3'" sing N N 21
CBR "C2'" "H2'" sing N N 22
CBR "C2'" "H2''" sing N N 23
CBR "C5'" "C4'" sing N N 24
CBR "C5'" "H5'" sing N N 25
CBR "C5'" "H5''" sing N N 26
CBR "C4'" "O4'" sing N N 27
CBR "C4'" "C3'" sing N N 28
CBR "C4'" "H4'" sing N N 29
CBR "O4'" "C1'" sing N N 30
CBR "C1'" "H1'" sing N N 31
CBR "C3'" "O3'" sing N N 32
CBR "C3'" "H3'" sing N N 33
CBR "O3'" "HO3'" sing N N 34
CBR OP3 HOP3 sing N N 35
DA OP3 P sing N N 36
DA OP3 HOP3 sing N N 37
DA P OP1 doub N N 38
DA P OP2 sing N N 39
DA P "O5'" sing N N 40
DA OP2 HOP2 sing N N 41
DA "O5'" "C5'" sing N N 42
DA "C5'" "C4'" sing N N 43
DA "C5'" "H5'" sing N N 44
DA "C5'" "H5''" sing N N 45
DA "C4'" "O4'" sing N N 46
DA "C4'" "C3'" sing N N 47
DA "C4'" "H4'" sing N N 48
DA "O4'" "C1'" sing N N 49
DA "C3'" "O3'" sing N N 50
DA "C3'" "C2'" sing N N 51
DA "C3'" "H3'" sing N N 52
DA "O3'" "HO3'" sing N N 53
DA "C2'" "C1'" sing N N 54
DA "C2'" "H2'" sing N N 55
DA "C2'" "H2''" sing N N 56
DA "C1'" N9 sing N N 57
DA "C1'" "H1'" sing N N 58
DA N9 C8 sing Y N 59
DA N9 C4 sing Y N 60
DA C8 N7 doub Y N 61
DA C8 H8 sing N N 62
DA N7 C5 sing Y N 63
DA C5 C6 sing Y N 64
DA C5 C4 doub Y N 65
DA C6 N6 sing N N 66
DA C6 N1 doub Y N 67
DA N6 H61 sing N N 68
DA N6 H62 sing N N 69
DA N1 C2 sing Y N 70
DA C2 N3 doub Y N 71
DA C2 H2 sing N N 72
DA N3 C4 sing Y N 73
DC OP3 P sing N N 74
DC OP3 HOP3 sing N N 75
DC P OP1 doub N N 76
DC P OP2 sing N N 77
DC P "O5'" sing N N 78
DC OP2 HOP2 sing N N 79
DC "O5'" "C5'" sing N N 80
DC "C5'" "C4'" sing N N 81
DC "C5'" "H5'" sing N N 82
DC "C5'" "H5''" sing N N 83
DC "C4'" "O4'" sing N N 84
DC "C4'" "C3'" sing N N 85
DC "C4'" "H4'" sing N N 86
DC "O4'" "C1'" sing N N 87
DC "C3'" "O3'" sing N N 88
DC "C3'" "C2'" sing N N 89
DC "C3'" "H3'" sing N N 90
DC "O3'" "HO3'" sing N N 91
DC "C2'" "C1'" sing N N 92
DC "C2'" "H2'" sing N N 93
DC "C2'" "H2''" sing N N 94
DC "C1'" N1 sing N N 95
DC "C1'" "H1'" sing N N 96
DC N1 C2 sing N N 97
DC N1 C6 sing N N 98
DC C2 O2 doub N N 99
DC C2 N3 sing N N 100
DC N3 C4 doub N N 101
DC C4 N4 sing N N 102
DC C4 C5 sing N N 103
DC N4 H41 sing N N 104
DC N4 H42 sing N N 105
DC C5 C6 doub N N 106
DC C5 H5 sing N N 107
DC C6 H6 sing N N 108
DG OP3 P sing N N 109
DG OP3 HOP3 sing N N 110
DG P OP1 doub N N 111
DG P OP2 sing N N 112
DG P "O5'" sing N N 113
DG OP2 HOP2 sing N N 114
DG "O5'" "C5'" sing N N 115
DG "C5'" "C4'" sing N N 116
DG "C5'" "H5'" sing N N 117
DG "C5'" "H5''" sing N N 118
DG "C4'" "O4'" sing N N 119
DG "C4'" "C3'" sing N N 120
DG "C4'" "H4'" sing N N 121
DG "O4'" "C1'" sing N N 122
DG "C3'" "O3'" sing N N 123
DG "C3'" "C2'" sing N N 124
DG "C3'" "H3'" sing N N 125
DG "O3'" "HO3'" sing N N 126
DG "C2'" "C1'" sing N N 127
DG "C2'" "H2'" sing N N 128
DG "C2'" "H2''" sing N N 129
DG "C1'" N9 sing N N 130
DG "C1'" "H1'" sing N N 131
DG N9 C8 sing Y N 132
DG N9 C4 sing Y N 133
DG C8 N7 doub Y N 134
DG C8 H8 sing N N 135
DG N7 C5 sing Y N 136
DG C5 C6 sing N N 137
DG C5 C4 doub Y N 138
DG C6 O6 doub N N 139
DG C6 N1 sing N N 140
DG N1 C2 sing N N 141
DG N1 H1 sing N N 142
DG C2 N2 sing N N 143
DG C2 N3 doub N N 144
DG N2 H21 sing N N 145
DG N2 H22 sing N N 146
DG N3 C4 sing N N 147
DT OP3 P sing N N 148
DT OP3 HOP3 sing N N 149
DT P OP1 doub N N 150
DT P OP2 sing N N 151
DT P "O5'" sing N N 152
DT OP2 HOP2 sing N N 153
DT "O5'" "C5'" sing N N 154
DT "C5'" "C4'" sing N N 155
DT "C5'" "H5'" sing N N 156
DT "C5'" "H5''" sing N N 157
DT "C4'" "O4'" sing N N 158
DT "C4'" "C3'" sing N N 159
DT "C4'" "H4'" sing N N 160
DT "O4'" "C1'" sing N N 161
DT "C3'" "O3'" sing N N 162
DT "C3'" "C2'" sing N N 163
DT "C3'" "H3'" sing N N 164
DT "O3'" "HO3'" sing N N 165
DT "C2'" "C1'" sing N N 166
DT "C2'" "H2'" sing N N 167
DT "C2'" "H2''" sing N N 168
DT "C1'" N1 sing N N 169
DT "C1'" "H1'" sing N N 170
DT N1 C2 sing N N 171
DT N1 C6 sing N N 172
DT C2 O2 doub N N 173
DT C2 N3 sing N N 174
DT N3 C4 sing N N 175
DT N3 H3 sing N N 176
DT C4 O4 doub N N 177
DT C4 C5 sing N N 178
DT C5 C7 sing N N 179
DT C5 C6 doub N N 180
DT C7 H71 sing N N 181
DT C7 H72 sing N N 182
DT C7 H73 sing N N 183
DT C6 H6 sing N N 184
HOH O H1 sing N N 185
HOH O H2 sing N N 186
NCO CO N1 sing N N 187
NCO CO N2 sing N N 188
NCO CO N3 sing N N 189
NCO CO N4 sing N N 190
NCO CO N5 sing N N 191
NCO CO N6 sing N N 192
NCO N1 HN11 sing N N 193
NCO N1 HN12 sing N N 194
NCO N1 HN13 sing N N 195
NCO N2 HN21 sing N N 196
NCO N2 HN22 sing N N 197
NCO N2 HN23 sing N N 198
NCO N3 HN31 sing N N 199
NCO N3 HN32 sing N N 200
NCO N3 HN33 sing N N 201
NCO N4 HN41 sing N N 202
NCO N4 HN42 sing N N 203
NCO N4 HN43 sing N N 204
NCO N5 HN51 sing N N 205
NCO N5 HN52 sing N N 206
NCO N5 HN53 sing N N 207
NCO N6 HN61 sing N N 208
NCO N6 HN62 sing N N 209
NCO N6 HN63 sing N N 210
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
376D 'b-form double helix'
376D 'mismatched base pair'
376D 'internal loop'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 8_665 -0.647 -0.153 -0.222 -1.257 6.292 1.074 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A CBR 2 1_555 A DG 7 8_665 0.219 -0.072 -0.208 9.376 8.175 -1.394 2 A_CBR2:DG7_A A 2 ? A 7 ? 19 1
1 A DG 3 1_555 A DA 6 8_665 6.327 -4.151 1.417 25.035 -14.740 9.917 3 A_DG3:DA6_A A 3 ? A 6 ? 11 9
1 A DG 1 1_555 A DC 8 1_555 -0.647 -0.153 -0.222 -1.257 6.292 1.074 4 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A CBR 2 1_555 A DG 7 1_555 0.219 -0.072 -0.208 9.376 8.175 -1.394 5 A_CBR2:DG7_A A 2 ? A 7 ? 19 1
1 A DG 3 1_555 A DA 6 1_555 6.327 -4.151 1.417 25.035 -14.740 9.917 6 A_DG3:DA6_A A 3 ? A 6 ? 11 9
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 8_665 A CBR 2 1_555 A DG 7 8_665 0.234 0.042 3.177 -1.360 0.946 31.025 -0.097 -0.690 3.164 1.767 2.540
31.068 1 AA_DG1CBR2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A CBR 2 1_555 A DG 7 8_665 A DG 3 1_555 A DA 6 8_665 0.476 1.572 3.201 -0.143 8.626 51.562 1.206 -0.550 3.403 9.837 0.163
52.230 2 AA_CBR2DG3:DA6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DG 1 1_555 A DC 8 1_555 A CBR 2 1_555 A DG 7 1_555 0.234 0.042 3.177 -1.360 0.946 31.025 -0.097 -0.690 3.164 1.767 2.540
31.068 3 AA_DG1CBR2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A CBR 2 1_555 A DG 7 1_555 A DG 3 1_555 A DA 6 1_555 0.476 1.572 3.201 -0.143 8.626 51.562 1.206 -0.550 3.403 9.837 0.163
52.230 4 AA_CBR2DG3:DA6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ?
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type other
_pdbx_initial_refinement_model.source_name ?
_pdbx_initial_refinement_model.details 'MANUALLY BUILT IN THE EXPERIMENTAL DENSITY'
#
_atom_sites.entry_id 376D
_atom_sites.fract_transf_matrix[1][1] 0.026624
_atom_sites.fract_transf_matrix[1][2] 0.015370
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.030742
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.015293
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
BR
C
CO
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 14.271 8.963 36.082 1.00 62.65 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 14.602 9.590 34.812 1.00 39.76 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 14.119 8.646 33.736 1.00 44.29 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 12.842 9.029 33.272 1.00 29.48 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 15.015 8.550 32.494 1.00 28.50 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 15.135 7.198 32.067 1.00 38.66 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 14.377 9.541 31.524 1.00 24.66 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 12.921 9.569 31.940 1.00 19.22 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 12.322 10.911 31.853 1.00 15.81 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 12.865 12.162 31.942 1.00 17.92 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 11.993 13.139 31.821 1.00 20.52 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 10.768 12.490 31.632 1.00 17.35 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 9.439 12.993 31.385 1.00 12.35 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 9.001 14.142 31.317 1.00 15.07 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 8.496 11.992 31.217 1.00 15.07 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 8.860 10.664 31.258 1.00 10.04 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 7.864 9.781 31.104 1.00 14.62 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 10.074 10.153 31.456 1.00 11.56 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 10.978 11.135 31.629 1.00 13.01 ? 1 DG A C4 1
HETATM 20 BR BR . CBR A 1 2 ? 14.475 12.479 28.883 1.00 19.56 ? 2 CBR A BR 1
HETATM 21 P P . CBR A 1 2 ? 15.812 6.601 30.744 1.00 29.71 ? 2 CBR A P 1
HETATM 22 O OP1 . CBR A 1 2 ? 16.215 5.221 31.165 1.00 26.34 ? 2 CBR A OP1 1
HETATM 23 O OP2 . CBR A 1 2 ? 16.978 7.391 30.271 1.00 25.16 ? 2 CBR A OP2 1
HETATM 24 O "O5'" . CBR A 1 2 ? 14.613 6.551 29.693 1.00 26.05 ? 2 CBR A "O5'" 1
HETATM 25 N N1 . CBR A 1 2 ? 11.674 9.529 28.208 1.00 17.68 ? 2 CBR A N1 1
HETATM 26 C C6 . CBR A 1 2 ? 12.818 10.242 28.435 1.00 17.89 ? 2 CBR A C6 1
HETATM 27 C C2 . CBR A 1 2 ? 10.449 10.183 28.058 1.00 15.22 ? 2 CBR A C2 1
HETATM 28 O O2 . CBR A 1 2 ? 9.419 9.527 27.867 1.00 13.69 ? 2 CBR A O2 1
HETATM 29 N N3 . CBR A 1 2 ? 10.426 11.547 28.156 1.00 12.44 ? 2 CBR A N3 1
HETATM 30 C C4 . CBR A 1 2 ? 11.589 12.233 28.395 1.00 10.25 ? 2 CBR A C4 1
HETATM 31 N N4 . CBR A 1 2 ? 11.433 13.565 28.435 1.00 12.22 ? 2 CBR A N4 1
HETATM 32 C C5 . CBR A 1 2 ? 12.852 11.584 28.540 1.00 15.23 ? 2 CBR A C5 1
HETATM 33 C "C2'" . CBR A 1 2 ? 12.593 7.493 27.114 1.00 38.78 ? 2 CBR A "C2'" 1
HETATM 34 C "C5'" . CBR A 1 2 ? 13.445 5.780 30.098 1.00 28.18 ? 2 CBR A "C5'" 1
HETATM 35 C "C4'" . CBR A 1 2 ? 12.362 6.123 29.101 1.00 26.15 ? 2 CBR A "C4'" 1
HETATM 36 O "O4'" . CBR A 1 2 ? 11.831 7.398 29.344 1.00 19.77 ? 2 CBR A "O4'" 1
HETATM 37 C "C1'" . CBR A 1 2 ? 11.585 8.066 28.090 1.00 25.79 ? 2 CBR A "C1'" 1
HETATM 38 C "C3'" . CBR A 1 2 ? 12.871 6.098 27.657 1.00 25.74 ? 2 CBR A "C3'" 1
HETATM 39 O "O3'" . CBR A 1 2 ? 12.253 5.027 26.945 1.00 25.19 ? 2 CBR A "O3'" 1
ATOM 40 P P . DG A 1 3 ? 12.596 4.681 25.408 1.00 30.02 ? 3 DG A P 1
ATOM 41 O OP1 . DG A 1 3 ? 12.113 3.290 25.279 1.00 35.71 ? 3 DG A OP1 1
ATOM 42 O OP2 . DG A 1 3 ? 14.064 4.836 25.165 1.00 27.51 ? 3 DG A OP2 1
ATOM 43 O "O5'" . DG A 1 3 ? 11.796 5.761 24.561 1.00 21.25 ? 3 DG A "O5'" 1
ATOM 44 C "C5'" . DG A 1 3 ? 10.357 5.865 24.632 1.00 21.24 ? 3 DG A "C5'" 1
ATOM 45 C "C4'" . DG A 1 3 ? 9.995 7.189 24.011 1.00 29.95 ? 3 DG A "C4'" 1
ATOM 46 O "O4'" . DG A 1 3 ? 10.701 8.226 24.667 1.00 18.46 ? 3 DG A "O4'" 1
ATOM 47 C "C3'" . DG A 1 3 ? 10.367 7.340 22.531 1.00 25.40 ? 3 DG A "C3'" 1
ATOM 48 O "O3'" . DG A 1 3 ? 9.475 8.237 21.872 1.00 36.38 ? 3 DG A "O3'" 1
ATOM 49 C "C2'" . DG A 1 3 ? 11.761 7.996 22.599 1.00 21.40 ? 3 DG A "C2'" 1
ATOM 50 C "C1'" . DG A 1 3 ? 11.360 9.025 23.666 1.00 13.64 ? 3 DG A "C1'" 1
ATOM 51 N N9 . DG A 1 3 ? 12.541 9.770 24.082 1.00 15.90 ? 3 DG A N9 1
ATOM 52 C C8 . DG A 1 3 ? 13.829 9.306 24.215 1.00 13.73 ? 3 DG A C8 1
ATOM 53 N N7 . DG A 1 3 ? 14.667 10.234 24.611 1.00 16.35 ? 3 DG A N7 1
ATOM 54 C C5 . DG A 1 3 ? 13.867 11.362 24.755 1.00 14.34 ? 3 DG A C5 1
ATOM 55 C C6 . DG A 1 3 ? 14.206 12.700 25.154 1.00 16.96 ? 3 DG A C6 1
ATOM 56 O O6 . DG A 1 3 ? 15.337 13.050 25.456 1.00 16.03 ? 3 DG A O6 1
ATOM 57 N N1 . DG A 1 3 ? 13.139 13.572 25.170 1.00 14.85 ? 3 DG A N1 1
ATOM 58 C C2 . DG A 1 3 ? 11.854 13.170 24.851 1.00 8.38 ? 3 DG A C2 1
ATOM 59 N N2 . DG A 1 3 ? 10.906 14.117 24.904 1.00 10.59 ? 3 DG A N2 1
ATOM 60 N N3 . DG A 1 3 ? 11.498 11.934 24.498 1.00 10.13 ? 3 DG A N3 1
ATOM 61 C C4 . DG A 1 3 ? 12.559 11.101 24.434 1.00 10.46 ? 3 DG A C4 1
ATOM 62 P P . DA A 1 4 ? 9.016 7.978 20.352 1.00 32.63 ? 4 DA A P 1
ATOM 63 O OP1 . DA A 1 4 ? 7.923 6.974 20.514 1.00 35.35 ? 4 DA A OP1 1
ATOM 64 O OP2 . DA A 1 4 ? 10.164 7.466 19.550 1.00 33.84 ? 4 DA A OP2 1
ATOM 65 O "O5'" . DA A 1 4 ? 8.487 9.398 19.872 1.00 33.33 ? 4 DA A "O5'" 1
ATOM 66 C "C5'" . DA A 1 4 ? 7.341 9.992 20.540 1.00 34.98 ? 4 DA A "C5'" 1
ATOM 67 C "C4'" . DA A 1 4 ? 7.706 11.451 20.750 1.00 28.09 ? 4 DA A "C4'" 1
ATOM 68 O "O4'" . DA A 1 4 ? 8.821 11.533 21.613 1.00 24.66 ? 4 DA A "O4'" 1
ATOM 69 C "C3'" . DA A 1 4 ? 8.160 12.162 19.480 1.00 34.84 ? 4 DA A "C3'" 1
ATOM 70 O "O3'" . DA A 1 4 ? 7.075 12.755 18.764 1.00 43.56 ? 4 DA A "O3'" 1
ATOM 71 C "C2'" . DA A 1 4 ? 9.151 13.216 19.947 1.00 28.48 ? 4 DA A "C2'" 1
ATOM 72 C "C1'" . DA A 1 4 ? 9.578 12.721 21.310 1.00 31.93 ? 4 DA A "C1'" 1
ATOM 73 N N9 . DA A 1 4 ? 11.010 12.377 21.265 1.00 12.76 ? 4 DA A N9 1
ATOM 74 C C8 . DA A 1 4 ? 11.543 11.145 20.994 1.00 17.42 ? 4 DA A C8 1
ATOM 75 N N7 . DA A 1 4 ? 12.853 11.127 21.022 1.00 13.32 ? 4 DA A N7 1
ATOM 76 C C5 . DA A 1 4 ? 13.181 12.446 21.325 1.00 15.77 ? 4 DA A C5 1
ATOM 77 C C6 . DA A 1 4 ? 14.433 13.096 21.499 1.00 11.50 ? 4 DA A C6 1
ATOM 78 N N6 . DA A 1 4 ? 15.618 12.486 21.396 1.00 12.30 ? 4 DA A N6 1
ATOM 79 N N1 . DA A 1 4 ? 14.385 14.418 21.803 1.00 14.83 ? 4 DA A N1 1
ATOM 80 C C2 . DA A 1 4 ? 13.178 15.086 21.911 1.00 10.35 ? 4 DA A C2 1
ATOM 81 N N3 . DA A 1 4 ? 11.978 14.542 21.754 1.00 15.83 ? 4 DA A N3 1
ATOM 82 C C4 . DA A 1 4 ? 12.064 13.225 21.477 1.00 9.41 ? 4 DA A C4 1
ATOM 83 P P . DA A 1 5 ? 6.724 12.253 17.274 1.00 29.12 ? 5 DA A P 1
ATOM 84 O OP1 . DA A 1 5 ? 5.318 12.725 17.143 1.00 31.15 ? 5 DA A OP1 1
ATOM 85 O OP2 . DA A 1 5 ? 6.850 10.770 17.152 1.00 33.21 ? 5 DA A OP2 1
ATOM 86 O "O5'" . DA A 1 5 ? 7.794 13.012 16.361 1.00 34.55 ? 5 DA A "O5'" 1
ATOM 87 C "C5'" . DA A 1 5 ? 7.594 14.420 16.087 1.00 30.30 ? 5 DA A "C5'" 1
ATOM 88 C "C4'" . DA A 1 5 ? 8.707 14.922 15.209 1.00 37.52 ? 5 DA A "C4'" 1
ATOM 89 O "O4'" . DA A 1 5 ? 9.935 14.263 15.446 1.00 31.38 ? 5 DA A "O4'" 1
ATOM 90 C "C3'" . DA A 1 5 ? 8.461 14.846 13.702 1.00 31.22 ? 5 DA A "C3'" 1
ATOM 91 O "O3'" . DA A 1 5 ? 8.470 16.143 13.102 1.00 37.28 ? 5 DA A "O3'" 1
ATOM 92 C "C2'" . DA A 1 5 ? 9.604 13.977 13.166 1.00 30.70 ? 5 DA A "C2'" 1
ATOM 93 C "C1'" . DA A 1 5 ? 10.682 14.282 14.199 1.00 35.84 ? 5 DA A "C1'" 1
ATOM 94 N N9 . DA A 1 5 ? 11.728 13.253 14.182 1.00 20.33 ? 5 DA A N9 1
ATOM 95 C C8 . DA A 1 5 ? 11.572 11.901 13.988 1.00 19.32 ? 5 DA A C8 1
ATOM 96 N N7 . DA A 1 5 ? 12.698 11.228 14.025 1.00 15.73 ? 5 DA A N7 1
ATOM 97 C C5 . DA A 1 5 ? 13.655 12.213 14.260 1.00 16.96 ? 5 DA A C5 1
ATOM 98 C C6 . DA A 1 5 ? 15.065 12.148 14.405 1.00 18.02 ? 5 DA A C6 1
ATOM 99 N N6 . DA A 1 5 ? 15.795 11.024 14.356 1.00 19.56 ? 5 DA A N6 1
ATOM 100 N N1 . DA A 1 5 ? 15.718 13.319 14.639 1.00 19.61 ? 5 DA A N1 1
ATOM 101 C C2 . DA A 1 5 ? 15.007 14.501 14.717 1.00 21.30 ? 5 DA A C2 1
ATOM 102 N N3 . DA A 1 5 ? 13.693 14.636 14.579 1.00 19.94 ? 5 DA A N3 1
ATOM 103 C C4 . DA A 1 5 ? 13.076 13.458 14.360 1.00 20.01 ? 5 DA A C4 1
ATOM 104 P P . DA A 1 6 ? 7.371 16.665 12.056 1.00 31.06 ? 6 DA A P 1
ATOM 105 O OP1 . DA A 1 6 ? 6.065 16.389 12.696 1.00 37.07 ? 6 DA A OP1 1
ATOM 106 O OP2 . DA A 1 6 ? 7.511 15.934 10.749 1.00 47.48 ? 6 DA A OP2 1
ATOM 107 O "O5'" . DA A 1 6 ? 7.741 18.196 11.870 1.00 33.14 ? 6 DA A "O5'" 1
ATOM 108 C "C5'" . DA A 1 6 ? 7.750 19.142 12.962 1.00 38.03 ? 6 DA A "C5'" 1
ATOM 109 C "C4'" . DA A 1 6 ? 7.748 20.501 12.295 1.00 31.24 ? 6 DA A "C4'" 1
ATOM 110 O "O4'" . DA A 1 6 ? 8.941 20.742 11.579 1.00 38.30 ? 6 DA A "O4'" 1
ATOM 111 C "C3'" . DA A 1 6 ? 6.642 20.668 11.248 1.00 29.16 ? 6 DA A "C3'" 1
ATOM 112 O "O3'" . DA A 1 6 ? 6.205 22.025 11.169 1.00 31.11 ? 6 DA A "O3'" 1
ATOM 113 C "C2'" . DA A 1 6 ? 7.330 20.195 9.954 1.00 21.62 ? 6 DA A "C2'" 1
ATOM 114 C "C1'" . DA A 1 6 ? 8.667 20.868 10.149 1.00 20.12 ? 6 DA A "C1'" 1
ATOM 115 N N9 . DA A 1 6 ? 9.740 20.138 9.453 1.00 15.61 ? 6 DA A N9 1
ATOM 116 C C8 . DA A 1 6 ? 9.816 18.861 8.994 1.00 18.18 ? 6 DA A C8 1
ATOM 117 N N7 . DA A 1 6 ? 10.970 18.580 8.424 1.00 15.80 ? 6 DA A N7 1
ATOM 118 C C5 . DA A 1 6 ? 11.673 19.774 8.496 1.00 12.42 ? 6 DA A C5 1
ATOM 119 C C6 . DA A 1 6 ? 12.982 20.166 8.106 1.00 18.17 ? 6 DA A C6 1
ATOM 120 N N6 . DA A 1 6 ? 13.863 19.399 7.448 1.00 17.38 ? 6 DA A N6 1
ATOM 121 N N1 . DA A 1 6 ? 13.340 21.462 8.349 1.00 15.62 ? 6 DA A N1 1
ATOM 122 C C2 . DA A 1 6 ? 12.470 22.336 8.977 1.00 16.39 ? 6 DA A C2 1
ATOM 123 N N3 . DA A 1 6 ? 11.242 22.027 9.384 1.00 17.10 ? 6 DA A N3 1
ATOM 124 C C4 . DA A 1 6 ? 10.931 20.741 9.135 1.00 13.37 ? 6 DA A C4 1
ATOM 125 P P . DG A 1 7 ? 4.956 22.445 10.239 1.00 34.99 ? 7 DG A P 1
ATOM 126 O OP1 . DG A 1 7 ? 4.270 23.485 11.047 1.00 32.06 ? 7 DG A OP1 1
ATOM 127 O OP2 . DG A 1 7 ? 4.078 21.277 9.951 1.00 26.70 ? 7 DG A OP2 1
ATOM 128 O "O5'" . DG A 1 7 ? 5.698 22.989 8.931 1.00 35.33 ? 7 DG A "O5'" 1
ATOM 129 C "C5'" . DG A 1 7 ? 6.646 24.063 9.109 1.00 24.57 ? 7 DG A "C5'" 1
ATOM 130 C "C4'" . DG A 1 7 ? 7.430 24.209 7.829 1.00 33.01 ? 7 DG A "C4'" 1
ATOM 131 O "O4'" . DG A 1 7 ? 8.160 23.027 7.591 1.00 30.85 ? 7 DG A "O4'" 1
ATOM 132 C "C3'" . DG A 1 7 ? 6.622 24.483 6.567 1.00 39.31 ? 7 DG A "C3'" 1
ATOM 133 O "O3'" . DG A 1 7 ? 7.187 25.563 5.809 1.00 37.51 ? 7 DG A "O3'" 1
ATOM 134 C "C2'" . DG A 1 7 ? 6.664 23.166 5.782 1.00 32.91 ? 7 DG A "C2'" 1
ATOM 135 C "C1'" . DG A 1 7 ? 8.038 22.680 6.191 1.00 31.03 ? 7 DG A "C1'" 1
ATOM 136 N N9 . DG A 1 7 ? 8.221 21.240 5.996 1.00 17.09 ? 7 DG A N9 1
ATOM 137 C C8 . DG A 1 7 ? 7.384 20.170 6.051 1.00 15.25 ? 7 DG A C8 1
ATOM 138 N N7 . DG A 1 7 ? 7.955 19.011 5.825 1.00 17.34 ? 7 DG A N7 1
ATOM 139 C C5 . DG A 1 7 ? 9.276 19.365 5.577 1.00 15.57 ? 7 DG A C5 1
ATOM 140 C C6 . DG A 1 7 ? 10.408 18.561 5.212 1.00 14.22 ? 7 DG A C6 1
ATOM 141 O O6 . DG A 1 7 ? 10.426 17.349 5.084 1.00 17.60 ? 7 DG A O6 1
ATOM 142 N N1 . DG A 1 7 ? 11.549 19.297 5.040 1.00 14.10 ? 7 DG A N1 1
ATOM 143 C C2 . DG A 1 7 ? 11.593 20.663 5.163 1.00 13.00 ? 7 DG A C2 1
ATOM 144 N N2 . DG A 1 7 ? 12.793 21.212 4.962 1.00 18.10 ? 7 DG A N2 1
ATOM 145 N N3 . DG A 1 7 ? 10.566 21.452 5.488 1.00 17.80 ? 7 DG A N3 1
ATOM 146 C C4 . DG A 1 7 ? 9.456 20.719 5.662 1.00 18.71 ? 7 DG A C4 1
ATOM 147 P P . DC A 1 8 ? 6.224 26.515 4.927 1.00 31.31 ? 8 DC A P 1
ATOM 148 O OP1 . DC A 1 8 ? 5.585 27.380 5.949 1.00 38.78 ? 8 DC A OP1 1
ATOM 149 O OP2 . DC A 1 8 ? 5.228 25.678 4.186 1.00 29.79 ? 8 DC A OP2 1
ATOM 150 O "O5'" . DC A 1 8 ? 7.245 27.259 3.961 1.00 39.66 ? 8 DC A "O5'" 1
ATOM 151 C "C5'" . DC A 1 8 ? 7.683 26.570 2.761 1.00 44.41 ? 8 DC A "C5'" 1
ATOM 152 C "C4'" . DC A 1 8 ? 9.197 26.531 2.809 1.00 44.74 ? 8 DC A "C4'" 1
ATOM 153 O "O4'" . DC A 1 8 ? 9.622 25.311 3.381 1.00 46.44 ? 8 DC A "O4'" 1
ATOM 154 C "C3'" . DC A 1 8 ? 9.851 26.594 1.431 1.00 46.39 ? 8 DC A "C3'" 1
ATOM 155 O "O3'" . DC A 1 8 ? 11.078 27.330 1.407 1.00 40.23 ? 8 DC A "O3'" 1
ATOM 156 C "C2'" . DC A 1 8 ? 10.032 25.126 1.044 1.00 49.75 ? 8 DC A "C2'" 1
ATOM 157 C "C1'" . DC A 1 8 ? 10.258 24.477 2.403 1.00 29.83 ? 8 DC A "C1'" 1
ATOM 158 N N1 . DC A 1 8 ? 9.736 23.100 2.358 1.00 20.94 ? 8 DC A N1 1
ATOM 159 C C2 . DC A 1 8 ? 10.688 22.120 2.087 1.00 15.63 ? 8 DC A C2 1
ATOM 160 O O2 . DC A 1 8 ? 11.853 22.448 1.904 1.00 14.41 ? 8 DC A O2 1
ATOM 161 N N3 . DC A 1 8 ? 10.270 20.823 2.036 1.00 19.37 ? 8 DC A N3 1
ATOM 162 C C4 . DC A 1 8 ? 8.972 20.479 2.230 1.00 16.80 ? 8 DC A C4 1
ATOM 163 N N4 . DC A 1 8 ? 8.624 19.194 2.164 1.00 13.88 ? 8 DC A N4 1
ATOM 164 C C5 . DC A 1 8 ? 8.009 21.490 2.503 1.00 15.56 ? 8 DC A C5 1
ATOM 165 C C6 . DC A 1 8 ? 8.417 22.764 2.380 1.00 17.91 ? 8 DC A C6 1
ATOM 166 P P . DT A 1 9 ? 11.138 28.815 0.780 1.00 58.00 ? 9 DT A P 1
ATOM 167 O OP1 . DT A 1 9 ? 12.393 28.799 -0.016 1.00 54.66 ? 9 DT A OP1 1
ATOM 168 O OP2 . DT A 1 9 ? 11.175 29.849 1.865 1.00 58.17 ? 9 DT A OP2 1
ATOM 169 O "O5'" . DT A 1 9 ? 9.803 28.918 -0.079 1.00 68.73 ? 9 DT A "O5'" 1
ATOM 170 C "C5'" . DT A 1 9 ? 9.316 30.213 -0.515 1.00 69.85 ? 9 DT A "C5'" 1
ATOM 171 C "C4'" . DT A 1 9 ? 8.378 30.712 0.563 1.00 73.54 ? 9 DT A "C4'" 1
ATOM 172 O "O4'" . DT A 1 9 ? 7.272 31.363 -0.022 1.00 74.12 ? 9 DT A "O4'" 1
ATOM 173 C "C3'" . DT A 1 9 ? 7.801 29.635 1.472 1.00 68.66 ? 9 DT A "C3'" 1
ATOM 174 O "O3'" . DT A 1 9 ? 7.761 30.027 2.848 1.00 68.05 ? 9 DT A "O3'" 1
ATOM 175 C "C2'" . DT A 1 9 ? 6.408 29.360 0.901 1.00 78.99 ? 9 DT A "C2'" 1
ATOM 176 C "C1'" . DT A 1 9 ? 6.037 30.726 0.354 1.00 79.50 ? 9 DT A "C1'" 1
ATOM 177 N N1 . DT A 1 9 ? 5.118 30.589 -0.793 1.00 78.10 ? 9 DT A N1 1
ATOM 178 C C2 . DT A 1 9 ? 5.581 29.973 -1.943 1.00 79.01 ? 9 DT A C2 1
ATOM 179 O O2 . DT A 1 9 ? 6.729 29.544 -2.027 1.00 73.28 ? 9 DT A O2 1
ATOM 180 N N3 . DT A 1 9 ? 4.713 29.857 -2.995 1.00 67.48 ? 9 DT A N3 1
ATOM 181 C C4 . DT A 1 9 ? 3.433 30.321 -2.936 1.00 72.96 ? 9 DT A C4 1
ATOM 182 O O4 . DT A 1 9 ? 2.637 30.176 -3.999 1.00 77.03 ? 9 DT A O4 1
ATOM 183 C C5 . DT A 1 9 ? 2.971 30.955 -1.753 1.00 61.07 ? 9 DT A C5 1
ATOM 184 C C7 . DT A 1 9 ? 1.563 31.486 -1.632 1.00 65.63 ? 9 DT A C7 1
ATOM 185 C C6 . DT A 1 9 ? 3.834 31.050 -0.732 1.00 80.29 ? 9 DT A C6 1
HETATM 186 CO CO . NCO B 2 . ? 18.780 10.843 25.743 0.33 13.07 ? 10 NCO A CO 1
HETATM 187 N N1 . NCO B 2 . ? 17.791 9.579 24.611 1.00 11.41 ? 10 NCO A N1 1
HETATM 188 N N2 . NCO B 2 . ? 19.394 9.354 26.846 1.00 12.18 ? 10 NCO A N2 1
HETATM 189 O O . HOH C 3 . ? 15.657 23.129 7.112 1.00 22.96 ? 11 HOH A O 1
HETATM 190 O O . HOH C 3 . ? 6.323 17.992 2.901 1.00 23.66 ? 12 HOH A O 1
HETATM 191 O O . HOH C 3 . ? 17.291 14.302 21.017 0.33 20.91 ? 13 HOH A O 1
HETATM 192 O O . HOH C 3 . ? 22.030 9.770 27.571 1.00 5.36 ? 14 HOH A O 1
HETATM 193 O O . HOH C 3 . ? 13.114 16.207 26.224 1.00 42.30 ? 15 HOH A O 1
HETATM 194 O O . HOH C 3 . ? 9.749 6.611 31.190 1.00 30.98 ? 16 HOH A O 1
HETATM 195 O O . HOH C 3 . ? 16.670 15.910 23.080 1.00 34.81 ? 17 HOH A O 1
HETATM 196 O O . HOH C 3 . ? 12.326 18.268 24.518 1.00 42.61 ? 18 HOH A O 1
HETATM 197 O O . HOH C 3 . ? 15.729 6.388 25.474 1.00 25.49 ? 19 HOH A O 1
HETATM 198 O O . HOH C 3 . ? 14.983 9.218 21.033 1.00 42.82 ? 20 HOH A O 1
HETATM 199 O O . HOH C 3 . ? 14.151 23.962 1.621 1.00 43.61 ? 21 HOH A O 1
HETATM 200 O O . HOH C 3 . ? 6.241 5.516 22.360 1.00 57.42 ? 22 HOH A O 1
HETATM 201 O O . HOH C 3 . ? 16.900 11.071 29.632 1.00 53.16 ? 23 HOH A O 1
HETATM 202 O O . HOH C 3 . ? 7.091 16.270 5.269 1.00 27.14 ? 24 HOH A O 1
HETATM 203 O O . HOH C 3 . ? 10.762 9.492 17.510 1.00 56.54 ? 25 HOH A O 1
HETATM 204 O O . HOH C 3 . ? 10.832 24.673 6.091 1.00 35.03 ? 26 HOH A O 1
HETATM 205 O O . HOH C 3 . ? 18.180 14.850 14.493 1.00 19.91 ? 27 HOH A O 1
HETATM 206 O O . HOH C 3 . ? 6.561 13.221 10.142 1.00 28.71 ? 28 HOH A O 1
#