data_327D
#
_entry.id 327D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 327D pdb_0000327d 10.2210/pdb327d/pdb
RCSB ADJB88 ? ?
WWPDB D_1000178796 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1997-05-22
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-21
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 327D
_pdbx_database_status.recvd_initial_deposition_date 1997-03-17
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Tippin, D.B.' 1
'Ramakrishnan, B.' 2
'Sundaralingam, M.' 3
#
_citation.id primary
_citation.title
'Methylation of the Z-DNA decamer d(GC)5 potentiates the formation of A-DNA: crystal structure of d(Gm5CGm5CGCGCGC).'
_citation.journal_abbrev J.Mol.Biol.
_citation.journal_volume 270
_citation.page_first 247
_citation.page_last 258
_citation.year 1997
_citation.journal_id_ASTM JMOBAK
_citation.country UK
_citation.journal_id_ISSN 0022-2836
_citation.journal_id_CSD 0070
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 9236126
_citation.pdbx_database_id_DOI 10.1006/jmbi.1997.1102
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Tippin, D.B.' 1 ?
primary 'Ramakrishnan, B.' 2 ?
primary 'Sundaralingam, M.' 3 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*CP*GP*CP*GP*C)-3')
;
3075.035 1 ? ? ? ?
2 water nat water 18.015 41 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(5CM)(DG)(5CM)(DG)(DC)(DG)(DC)(DG)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GCGCGCGCGC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 5CM n
1 3 DG n
1 4 5CM n
1 5 DG n
1 6 DC n
1 7 DG n
1 8 DC n
1 9 DG n
1 10 DC n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 5CM 2 2 2 5CM +C A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 5CM 4 4 4 5CM +C A . n
A 1 5 DG 5 5 5 DG G A . n
A 1 6 DC 6 6 6 DC C A . n
A 1 7 DG 7 7 7 DG G A . n
A 1 8 DC 8 8 8 DC C A . n
A 1 9 DG 9 9 9 DG G A . n
A 1 10 DC 10 10 10 DC C A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 11 11 HOH HOH A .
B 2 HOH 2 12 12 HOH HOH A .
B 2 HOH 3 13 13 HOH HOH A .
B 2 HOH 4 14 14 HOH HOH A .
B 2 HOH 5 15 15 HOH HOH A .
B 2 HOH 6 16 16 HOH HOH A .
B 2 HOH 7 17 17 HOH HOH A .
B 2 HOH 8 18 18 HOH HOH A .
B 2 HOH 9 19 19 HOH HOH A .
B 2 HOH 10 20 20 HOH HOH A .
B 2 HOH 11 21 21 HOH HOH A .
B 2 HOH 12 22 22 HOH HOH A .
B 2 HOH 13 23 23 HOH HOH A .
B 2 HOH 14 24 24 HOH HOH A .
B 2 HOH 15 25 25 HOH HOH A .
B 2 HOH 16 26 26 HOH HOH A .
B 2 HOH 17 27 27 HOH HOH A .
B 2 HOH 18 28 28 HOH HOH A .
B 2 HOH 19 29 29 HOH HOH A .
B 2 HOH 20 30 30 HOH HOH A .
B 2 HOH 21 31 31 HOH HOH A .
B 2 HOH 22 32 32 HOH HOH A .
B 2 HOH 23 33 33 HOH HOH A .
B 2 HOH 24 34 34 HOH HOH A .
B 2 HOH 25 35 35 HOH HOH A .
B 2 HOH 26 36 36 HOH HOH A .
B 2 HOH 27 37 37 HOH HOH A .
B 2 HOH 28 38 38 HOH HOH A .
B 2 HOH 29 39 39 HOH HOH A .
B 2 HOH 30 40 40 HOH HOH A .
B 2 HOH 31 41 41 HOH HOH A .
B 2 HOH 32 42 42 HOH HOH A .
B 2 HOH 33 43 43 HOH HOH A .
B 2 HOH 34 44 44 HOH HOH A .
B 2 HOH 35 45 45 HOH HOH A .
B 2 HOH 36 46 46 HOH HOH A .
B 2 HOH 37 47 47 HOH HOH A .
B 2 HOH 38 48 48 HOH HOH A .
B 2 HOH 39 49 49 HOH HOH A .
B 2 HOH 40 50 50 HOH HOH A .
B 2 HOH 41 51 51 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
X-PLOR refinement . ? 1
MSC 'data reduction' . ? 2
#
_cell.entry_id 327D
_cell.length_a 39.330
_cell.length_b 39.330
_cell.length_c 77.930
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 327D
_symmetry.space_group_name_H-M 'P 61 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 178
#
_exptl.entry_id 327D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.83
_exptl_crystal.density_percent_sol 56.52
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 295.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'RIGAKU RAXIS'
_diffrn_detector.pdbx_collection_date 1995-06-01
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 327D
_reflns.observed_criterion_sigma_I 0.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high 1.940
_reflns.number_obs 2601
_reflns.number_all ?
_reflns.percent_possible_obs 86.800
_reflns.pdbx_Rmerge_I_obs 0.052
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 327D
_refine.ls_number_reflns_obs 2533
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.000
_refine.ls_d_res_high 1.940
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.191
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.191
_refine.ls_R_factor_R_free 0.227
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 202
_refine_hist.pdbx_number_atoms_ligand 2
_refine_hist.number_atoms_solvent 41
_refine_hist.number_atoms_total 245
_refine_hist.d_res_high 1.940
_refine_hist.d_res_low 8.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 2.08 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 327D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 327D
_struct.title 'CRYSTAL STRUCTURES OF D(GM5CGM5CGCGCGC)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 327D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'A-DNA, DOUBLE HELIX, MODIFIED, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 327D
_struct_ref.pdbx_db_accession 327D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 327D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 10
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 327D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 10
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 10
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 38.9650000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A 5CM 2 P ? ? A DG 1 A 5CM 2 1_555 ? ? ? ? ? ? ? 1.627 ? ?
covale2 covale both ? A 5CM 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A 5CM 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.593 ? ?
covale3 covale both ? A DG 3 "O3'" ? ? ? 1_555 A 5CM 4 P ? ? A DG 3 A 5CM 4 1_555 ? ? ? ? ? ? ? 1.565 ? ?
covale4 covale both ? A 5CM 4 "O3'" ? ? ? 1_555 A DG 5 P ? ? A 5CM 4 A DG 5 1_555 ? ? ? ? ? ? ? 1.619 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 10 N3 ? ? A DG 1 A DC 10 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 10 O2 ? ? A DG 1 A DC 10 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 10 N4 ? ? A DG 1 A DC 10 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A 5CM 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A 5CM 2 A DG 9 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A 5CM 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A 5CM 2 A DG 9 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A 5CM 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A 5CM 2 A DG 9 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 3 A DC 8 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 3 A DC 8 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 3 A DC 8 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A 5CM 4 N3 ? ? ? 1_555 A DG 7 N1 ? ? A 5CM 4 A DG 7 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A 5CM 4 N4 ? ? ? 1_555 A DG 7 O6 ? ? A 5CM 4 A DG 7 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A 5CM 4 O2 ? ? ? 1_555 A DG 7 N2 ? ? A 5CM 4 A DG 7 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 5 A DC 6 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 5 A DC 6 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 5 A DC 6 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 6 A DG 5 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 6 A DG 5 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 6 A DG 5 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A 5CM 4 N3 ? ? A DG 7 A 5CM 4 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A 5CM 4 O2 ? ? A DG 7 A 5CM 4 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A 5CM 4 N4 ? ? A DG 7 A 5CM 4 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 8 A DG 3 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 8 A DG 3 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 8 A DG 3 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A 5CM 2 N3 ? ? A DG 9 A 5CM 2 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog26 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A 5CM 2 O2 ? ? A DG 9 A 5CM 2 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A 5CM 2 N4 ? ? A DG 9 A 5CM 2 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? A DC 10 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 10 A DG 1 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog29 hydrog ? ? A DC 10 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 10 A DG 1 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? A DC 10 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 10 A DG 1 11_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? 1.445 1.521 -0.076 0.010 N
2 1 "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 1.444 1.521 -0.077 0.010 N
3 1 C4 A DG 9 ? ? C5 A DG 9 ? ? 1.335 1.379 -0.044 0.007 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.33 108.30 2.03 0.30 N
2 1 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? 97.96 102.20 -4.24 0.70 N
3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.64 108.30 3.34 0.30 N
4 1 "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? "C2'" A DC 6 ? ? 97.62 102.20 -4.58 0.70 N
5 1 "C3'" A DC 6 ? ? "C2'" A DC 6 ? ? "C1'" A DC 6 ? ? 97.46 102.40 -4.94 0.80 N
6 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 112.48 108.30 4.18 0.30 N
7 1 "O4'" A DC 8 ? ? "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 101.23 104.50 -3.27 0.40 N
8 1 "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? "C2'" A DC 8 ? ? 96.61 102.20 -5.59 0.70 N
9 1 N1 A DC 8 ? ? C2 A DC 8 ? ? O2 A DC 8 ? ? 122.75 118.90 3.85 0.60 N
10 1 "C4'" A DG 9 ? ? "C3'" A DG 9 ? ? "C2'" A DG 9 ? ? 97.67 102.20 -4.53 0.70 N
11 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.97 108.30 3.67 0.30 N
12 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.74 108.30 3.44 0.30 N
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DG A 7 ? ? 0.070 'SIDE CHAIN'
2 1 DG A 9 ? ? 0.065 'SIDE CHAIN'
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A 5CM 2 A 5CM 2 ? DC ?
2 A 5CM 4 A 5CM 4 ? DC ?
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 42 ? B HOH .
2 1 A HOH 44 ? B HOH .
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
5CM N1 N N N 1
5CM C2 C N N 2
5CM N3 N N N 3
5CM C4 C N N 4
5CM C5 C N N 5
5CM C5A C N N 6
5CM C6 C N N 7
5CM O2 O N N 8
5CM N4 N N N 9
5CM "C1'" C N R 10
5CM "C2'" C N N 11
5CM "C3'" C N S 12
5CM "C4'" C N R 13
5CM "O4'" O N N 14
5CM "O3'" O N N 15
5CM "C5'" C N N 16
5CM "O5'" O N N 17
5CM P P N N 18
5CM OP1 O N N 19
5CM OP2 O N N 20
5CM OP3 O N N 21
5CM H5A1 H N N 22
5CM H5A2 H N N 23
5CM H5A3 H N N 24
5CM H6 H N N 25
5CM HN41 H N N 26
5CM HN42 H N N 27
5CM "H1'" H N N 28
5CM "H2'" H N N 29
5CM "H2''" H N N 30
5CM "H3'" H N N 31
5CM "H4'" H N N 32
5CM "HO3'" H N N 33
5CM "H5'" H N N 34
5CM "H5''" H N N 35
5CM HOP2 H N N 36
5CM HOP3 H N N 37
DC OP3 O N N 38
DC P P N N 39
DC OP1 O N N 40
DC OP2 O N N 41
DC "O5'" O N N 42
DC "C5'" C N N 43
DC "C4'" C N R 44
DC "O4'" O N N 45
DC "C3'" C N S 46
DC "O3'" O N N 47
DC "C2'" C N N 48
DC "C1'" C N R 49
DC N1 N N N 50
DC C2 C N N 51
DC O2 O N N 52
DC N3 N N N 53
DC C4 C N N 54
DC N4 N N N 55
DC C5 C N N 56
DC C6 C N N 57
DC HOP3 H N N 58
DC HOP2 H N N 59
DC "H5'" H N N 60
DC "H5''" H N N 61
DC "H4'" H N N 62
DC "H3'" H N N 63
DC "HO3'" H N N 64
DC "H2'" H N N 65
DC "H2''" H N N 66
DC "H1'" H N N 67
DC H41 H N N 68
DC H42 H N N 69
DC H5 H N N 70
DC H6 H N N 71
DG OP3 O N N 72
DG P P N N 73
DG OP1 O N N 74
DG OP2 O N N 75
DG "O5'" O N N 76
DG "C5'" C N N 77
DG "C4'" C N R 78
DG "O4'" O N N 79
DG "C3'" C N S 80
DG "O3'" O N N 81
DG "C2'" C N N 82
DG "C1'" C N R 83
DG N9 N Y N 84
DG C8 C Y N 85
DG N7 N Y N 86
DG C5 C Y N 87
DG C6 C N N 88
DG O6 O N N 89
DG N1 N N N 90
DG C2 C N N 91
DG N2 N N N 92
DG N3 N N N 93
DG C4 C Y N 94
DG HOP3 H N N 95
DG HOP2 H N N 96
DG "H5'" H N N 97
DG "H5''" H N N 98
DG "H4'" H N N 99
DG "H3'" H N N 100
DG "HO3'" H N N 101
DG "H2'" H N N 102
DG "H2''" H N N 103
DG "H1'" H N N 104
DG H8 H N N 105
DG H1 H N N 106
DG H21 H N N 107
DG H22 H N N 108
HOH O O N N 109
HOH H1 H N N 110
HOH H2 H N N 111
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5CM N1 C2 sing N N 1
5CM N1 C6 sing N N 2
5CM N1 "C1'" sing N N 3
5CM C2 N3 sing N N 4
5CM C2 O2 doub N N 5
5CM N3 C4 doub N N 6
5CM C4 C5 sing N N 7
5CM C4 N4 sing N N 8
5CM C5 C5A sing N N 9
5CM C5 C6 doub N N 10
5CM C5A H5A1 sing N N 11
5CM C5A H5A2 sing N N 12
5CM C5A H5A3 sing N N 13
5CM C6 H6 sing N N 14
5CM N4 HN41 sing N N 15
5CM N4 HN42 sing N N 16
5CM "C1'" "C2'" sing N N 17
5CM "C1'" "O4'" sing N N 18
5CM "C1'" "H1'" sing N N 19
5CM "C2'" "C3'" sing N N 20
5CM "C2'" "H2'" sing N N 21
5CM "C2'" "H2''" sing N N 22
5CM "C3'" "C4'" sing N N 23
5CM "C3'" "O3'" sing N N 24
5CM "C3'" "H3'" sing N N 25
5CM "C4'" "O4'" sing N N 26
5CM "C4'" "C5'" sing N N 27
5CM "C4'" "H4'" sing N N 28
5CM "O3'" "HO3'" sing N N 29
5CM "C5'" "O5'" sing N N 30
5CM "C5'" "H5'" sing N N 31
5CM "C5'" "H5''" sing N N 32
5CM "O5'" P sing N N 33
5CM P OP1 doub N N 34
5CM P OP2 sing N N 35
5CM P OP3 sing N N 36
5CM OP2 HOP2 sing N N 37
5CM OP3 HOP3 sing N N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
HOH O H1 sing N N 113
HOH O H2 sing N N 114
#
_ndb_struct_conf_na.entry_id 327D
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 10 11_555 -0.559 -0.267 0.027 -7.096 -8.474 -2.354 1 A_DG1:DC10_A A 1 ? A 10 ? 19 1
1 A 5CM 2 1_555 A DG 9 11_555 0.030 -0.154 0.048 3.095 -10.136 -1.117 2 A_5CM2:DG9_A A 2 ? A 9 ? 19 1
1 A DG 3 1_555 A DC 8 11_555 -0.331 -0.239 0.347 6.957 -8.208 -0.905 3 A_DG3:DC8_A A 3 ? A 8 ? 19 1
1 A 5CM 4 1_555 A DG 7 11_555 0.186 -0.152 0.075 7.125 -12.138 -3.739 4 A_5CM4:DG7_A A 4 ? A 7 ? 19 1
1 A DG 5 1_555 A DC 6 11_555 -0.108 -0.197 0.097 2.885 -14.429 -3.590 5 A_DG5:DC6_A A 5 ? A 6 ? 19 1
1 A DC 6 1_555 A DG 5 11_555 0.108 -0.197 0.097 -2.885 -14.429 -3.590 6 A_DC6:DG5_A A 6 ? A 5 ? 19 1
1 A DG 7 1_555 A 5CM 4 11_555 -0.186 -0.152 0.075 -7.125 -12.138 -3.740 7 A_DG7:5CM4_A A 7 ? A 4 ? 19 1
1 A DC 8 1_555 A DG 3 11_555 0.331 -0.239 0.347 -6.957 -8.208 -0.905 8 A_DC8:DG3_A A 8 ? A 3 ? 19 1
1 A DG 9 1_555 A 5CM 2 11_555 -0.030 -0.154 0.048 -3.095 -10.136 -1.117 9 A_DG9:5CM2_A A 9 ? A 2 ? 19 1
1 A DC 10 1_555 A DG 1 11_555 0.559 -0.267 0.027 7.096 -8.474 -2.354 10 A_DC10:DG1_A A 10 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 10 11_555 A 5CM 2 1_555 A DG 9 11_555 0.149 -1.067 3.055 0.322 6.828 34.393 -2.699 -0.204 2.800 11.408
-0.537 35.045 1 AA_DG15CM2:DG9DC10_AA A 1 ? A 10 ? A 2 ? A 9 ?
1 A 5CM 2 1_555 A DG 9 11_555 A DG 3 1_555 A DC 8 11_555 0.143 -1.347 3.210 -2.324 8.437 29.194 -4.122 -0.702 2.705 16.283
4.485 30.450 2 AA_5CM2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ?
1 A DG 3 1_555 A DC 8 11_555 A 5CM 4 1_555 A DG 7 11_555 -0.425 -1.691 3.369 -1.148 3.196 31.985 -3.628 0.561 3.202 5.780
2.076 32.160 3 AA_DG35CM4:DG7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ?
1 A 5CM 4 1_555 A DG 7 11_555 A DG 5 1_555 A DC 6 11_555 -0.679 -1.688 3.189 -2.816 14.833 32.430 -4.641 0.750 2.276 24.943
4.735 35.687 4 AA_5CM4DG5:DC6DG7_AA A 4 ? A 7 ? A 5 ? A 6 ?
1 A DG 5 1_555 A DC 6 11_555 A DC 6 1_555 A DG 5 11_555 0.000 -1.525 3.374 0.000 6.355 33.174 -3.645 0.000 3.038 11.005
0.000 33.761 5 AA_DG5DC6:DG5DC6_AA A 5 ? A 6 ? A 6 ? A 5 ?
1 A DC 6 1_555 A DG 5 11_555 A DG 7 1_555 A 5CM 4 11_555 0.679 -1.688 3.189 2.816 14.833 32.430 -4.641 -0.750 2.276 24.943
-4.735 35.686 6 AA_DC6DG7:5CM4DG5_AA A 6 ? A 5 ? A 7 ? A 4 ?
1 A DG 7 1_555 A 5CM 4 11_555 A DC 8 1_555 A DG 3 11_555 0.425 -1.691 3.369 1.148 3.196 31.985 -3.628 -0.561 3.202 5.780
-2.076 32.160 7 AA_DG7DC8:DG35CM4_AA A 7 ? A 4 ? A 8 ? A 3 ?
1 A DC 8 1_555 A DG 3 11_555 A DG 9 1_555 A 5CM 2 11_555 -0.143 -1.347 3.210 2.324 8.437 29.194 -4.122 0.702 2.705 16.283
-4.485 30.450 8 AA_DC8DG9:5CM2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ?
1 A DG 9 1_555 A 5CM 2 11_555 A DC 10 1_555 A DG 1 11_555 -0.149 -1.067 3.055 -0.322 6.828 34.393 -2.699 0.204 2.800 11.408
0.537 35.045 9 AA_DG9DC10:DG15CM2_AA A 9 ? A 2 ? A 10 ? A 1 ?
#
_atom_sites.entry_id 327D
_atom_sites.fract_transf_matrix[1][1] 0.025426
_atom_sites.fract_transf_matrix[1][2] 0.014680
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.029359
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.012832
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? -9.817 20.415 16.484 1.00 45.36 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? -9.550 18.998 16.451 1.00 37.69 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? -8.737 18.557 15.247 1.00 36.66 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? -9.392 19.030 14.062 1.00 34.50 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? -7.381 19.147 15.177 1.00 36.17 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? -6.527 18.259 15.860 1.00 42.44 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? -7.096 18.995 13.688 1.00 32.57 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? -8.412 19.415 13.095 1.00 30.35 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? -8.480 20.864 12.847 1.00 24.47 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? -9.159 21.811 13.527 1.00 23.22 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? -9.058 22.983 13.032 1.00 28.33 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? -8.251 22.812 11.939 1.00 26.02 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? -7.831 23.760 10.984 1.00 26.23 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? -8.046 24.970 11.015 1.00 29.98 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? -7.063 23.171 9.981 1.00 24.67 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? -6.743 21.827 9.935 1.00 24.89 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? -6.030 21.392 8.889 1.00 22.10 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? -7.141 20.950 10.857 1.00 26.96 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? -7.888 21.510 11.820 1.00 24.98 ? 1 DG A C4 1
HETATM 20 N N1 . 5CM A 1 2 ? -3.921 21.759 12.509 1.00 29.87 ? 2 5CM A N1 1
HETATM 21 C C2 . 5CM A 1 2 ? -3.809 22.812 11.636 1.00 27.87 ? 2 5CM A C2 1
HETATM 22 N N3 . 5CM A 1 2 ? -4.473 23.949 11.923 1.00 26.80 ? 2 5CM A N3 1
HETATM 23 C C4 . 5CM A 1 2 ? -5.214 24.079 13.011 1.00 28.65 ? 2 5CM A C4 1
HETATM 24 C C5 . 5CM A 1 2 ? -5.342 23.002 13.938 1.00 29.91 ? 2 5CM A C5 1
HETATM 25 C C5A . 5CM A 1 2 ? -6.154 23.086 15.215 1.00 27.16 ? 2 5CM A C5A 1
HETATM 26 C C6 . 5CM A 1 2 ? -4.683 21.872 13.640 1.00 32.14 ? 2 5CM A C6 1
HETATM 27 O O2 . 5CM A 1 2 ? -3.133 22.743 10.610 1.00 28.71 ? 2 5CM A O2 1
HETATM 28 N N4 . 5CM A 1 2 ? -5.855 25.229 13.200 1.00 26.74 ? 2 5CM A N4 1
HETATM 29 C "C1'" . 5CM A 1 2 ? -3.232 20.503 12.162 1.00 32.23 ? 2 5CM A "C1'" 1
HETATM 30 C "C2'" . 5CM A 1 2 ? -1.776 20.548 12.506 1.00 36.32 ? 2 5CM A "C2'" 1
HETATM 31 C "C3'" . 5CM A 1 2 ? -1.788 19.869 13.852 1.00 40.99 ? 2 5CM A "C3'" 1
HETATM 32 C "C4'" . 5CM A 1 2 ? -2.710 18.718 13.582 1.00 35.03 ? 2 5CM A "C4'" 1
HETATM 33 O "O4'" . 5CM A 1 2 ? -3.756 19.343 12.849 1.00 36.98 ? 2 5CM A "O4'" 1
HETATM 34 O "O3'" . 5CM A 1 2 ? -0.488 19.363 14.040 1.00 44.28 ? 2 5CM A "O3'" 1
HETATM 35 C "C5'" . 5CM A 1 2 ? -3.359 18.124 14.835 1.00 38.76 ? 2 5CM A "C5'" 1
HETATM 36 O "O5'" . 5CM A 1 2 ? -4.132 19.110 15.519 1.00 40.02 ? 2 5CM A "O5'" 1
HETATM 37 P P . 5CM A 1 2 ? -5.235 18.825 16.671 1.00 43.95 ? 2 5CM A P 1
HETATM 38 O OP1 . 5CM A 1 2 ? -4.744 17.710 17.519 1.00 45.69 ? 2 5CM A OP1 1
HETATM 39 O OP2 . 5CM A 1 2 ? -5.604 20.135 17.304 1.00 41.57 ? 2 5CM A OP2 1
ATOM 40 P P . DG A 1 3 ? 0.400 20.189 15.073 1.00 43.40 ? 3 DG A P 1
ATOM 41 O OP1 . DG A 1 3 ? 1.473 19.270 15.486 1.00 50.71 ? 3 DG A OP1 1
ATOM 42 O OP2 . DG A 1 3 ? -0.449 20.836 16.097 1.00 44.96 ? 3 DG A OP2 1
ATOM 43 O "O5'" . DG A 1 3 ? 1.047 21.324 14.175 1.00 39.34 ? 3 DG A "O5'" 1
ATOM 44 C "C5'" . DG A 1 3 ? 2.078 20.992 13.302 1.00 36.64 ? 3 DG A "C5'" 1
ATOM 45 C "C4'" . DG A 1 3 ? 2.193 22.144 12.399 1.00 37.23 ? 3 DG A "C4'" 1
ATOM 46 O "O4'" . DG A 1 3 ? 0.900 22.462 11.949 1.00 40.59 ? 3 DG A "O4'" 1
ATOM 47 C "C3'" . DG A 1 3 ? 2.612 23.379 13.068 1.00 39.93 ? 3 DG A "C3'" 1
ATOM 48 O "O3'" . DG A 1 3 ? 4.010 23.312 13.062 1.00 43.37 ? 3 DG A "O3'" 1
ATOM 49 C "C2'" . DG A 1 3 ? 2.217 24.358 11.970 1.00 39.19 ? 3 DG A "C2'" 1
ATOM 50 C "C1'" . DG A 1 3 ? 0.843 23.872 11.656 1.00 35.36 ? 3 DG A "C1'" 1
ATOM 51 N N9 . DG A 1 3 ? -0.169 24.559 12.482 1.00 27.72 ? 3 DG A N9 1
ATOM 52 C C8 . DG A 1 3 ? -0.892 24.098 13.557 1.00 29.72 ? 3 DG A C8 1
ATOM 53 N N7 . DG A 1 3 ? -1.787 24.911 14.005 1.00 24.80 ? 3 DG A N7 1
ATOM 54 C C5 . DG A 1 3 ? -1.643 25.989 13.162 1.00 22.13 ? 3 DG A C5 1
ATOM 55 C C6 . DG A 1 3 ? -2.355 27.180 13.159 1.00 20.05 ? 3 DG A C6 1
ATOM 56 O O6 . DG A 1 3 ? -3.284 27.485 13.868 1.00 20.95 ? 3 DG A O6 1
ATOM 57 N N1 . DG A 1 3 ? -1.924 28.013 12.184 1.00 22.60 ? 3 DG A N1 1
ATOM 58 C C2 . DG A 1 3 ? -0.919 27.727 11.291 1.00 23.40 ? 3 DG A C2 1
ATOM 59 N N2 . DG A 1 3 ? -0.714 28.656 10.364 1.00 23.45 ? 3 DG A N2 1
ATOM 60 N N3 . DG A 1 3 ? -0.226 26.583 11.277 1.00 23.44 ? 3 DG A N3 1
ATOM 61 C C4 . DG A 1 3 ? -0.655 25.775 12.245 1.00 24.96 ? 3 DG A C4 1
HETATM 62 N N1 . 5CM A 1 4 ? 2.223 28.506 13.113 1.00 29.83 ? 4 5CM A N1 1
HETATM 63 C C2 . 5CM A 1 4 ? 1.409 29.606 13.210 1.00 27.95 ? 4 5CM A C2 1
HETATM 64 N N3 . 5CM A 1 4 ? 0.432 29.575 14.149 1.00 27.85 ? 4 5CM A N3 1
HETATM 65 C C4 . 5CM A 1 4 ? 0.233 28.516 14.955 1.00 27.80 ? 4 5CM A C4 1
HETATM 66 C C5 . 5CM A 1 4 ? 1.064 27.386 14.864 1.00 23.98 ? 4 5CM A C5 1
HETATM 67 C C5A . 5CM A 1 4 ? 0.852 26.176 15.733 1.00 19.20 ? 4 5CM A C5A 1
HETATM 68 C C6 . 5CM A 1 4 ? 2.039 27.425 13.946 1.00 28.15 ? 4 5CM A C6 1
HETATM 69 O O2 . 5CM A 1 4 ? 1.511 30.551 12.421 1.00 32.98 ? 4 5CM A O2 1
HETATM 70 N N4 . 5CM A 1 4 ? -0.805 28.509 15.804 1.00 28.12 ? 4 5CM A N4 1
HETATM 71 C "C1'" . 5CM A 1 4 ? 3.239 28.519 12.028 1.00 33.03 ? 4 5CM A "C1'" 1
HETATM 72 C "C2'" . 5CM A 1 4 ? 4.454 29.391 12.355 1.00 35.40 ? 4 5CM A "C2'" 1
HETATM 73 C "C3'" . 5CM A 1 4 ? 5.350 28.358 12.972 1.00 37.66 ? 4 5CM A "C3'" 1
HETATM 74 C "C4'" . 5CM A 1 4 ? 5.189 27.306 11.923 1.00 35.55 ? 4 5CM A "C4'" 1
HETATM 75 O "O4'" . 5CM A 1 4 ? 3.777 27.220 11.778 1.00 34.36 ? 4 5CM A "O4'" 1
HETATM 76 O "O3'" . 5CM A 1 4 ? 6.691 28.833 12.891 1.00 42.13 ? 4 5CM A "O3'" 1
HETATM 77 C "C5'" . 5CM A 1 4 ? 5.629 25.966 12.390 1.00 36.71 ? 4 5CM A "C5'" 1
HETATM 78 O "O5'" . 5CM A 1 4 ? 4.801 25.622 13.495 1.00 39.48 ? 4 5CM A "O5'" 1
HETATM 79 P P . 5CM A 1 4 ? 4.835 24.138 14.104 1.00 43.20 ? 4 5CM A P 1
HETATM 80 O OP1 . 5CM A 1 4 ? 6.218 23.609 14.025 1.00 50.02 ? 4 5CM A OP1 1
HETATM 81 O OP2 . 5CM A 1 4 ? 4.081 24.103 15.383 1.00 45.35 ? 4 5CM A OP2 1
ATOM 82 P P . DG A 1 5 ? 7.384 29.591 14.142 1.00 38.95 ? 5 DG A P 1
ATOM 83 O OP1 . DG A 1 5 ? 8.818 29.710 13.829 1.00 47.74 ? 5 DG A OP1 1
ATOM 84 O OP2 . DG A 1 5 ? 6.965 28.941 15.419 1.00 41.65 ? 5 DG A OP2 1
ATOM 85 O "O5'" . DG A 1 5 ? 6.744 31.072 14.110 1.00 37.72 ? 5 DG A "O5'" 1
ATOM 86 C "C5'" . DG A 1 5 ? 7.229 32.130 13.304 1.00 31.05 ? 5 DG A "C5'" 1
ATOM 87 C "C4'" . DG A 1 5 ? 6.412 33.385 13.608 1.00 31.03 ? 5 DG A "C4'" 1
ATOM 88 O "O4'" . DG A 1 5 ? 5.033 33.114 13.336 1.00 29.57 ? 5 DG A "O4'" 1
ATOM 89 C "C3'" . DG A 1 5 ? 6.403 33.817 15.066 1.00 32.02 ? 5 DG A "C3'" 1
ATOM 90 O "O3'" . DG A 1 5 ? 7.566 34.625 15.297 1.00 33.06 ? 5 DG A "O3'" 1
ATOM 91 C "C2'" . DG A 1 5 ? 5.182 34.731 15.024 1.00 28.29 ? 5 DG A "C2'" 1
ATOM 92 C "C1'" . DG A 1 5 ? 4.232 33.883 14.222 1.00 25.64 ? 5 DG A "C1'" 1
ATOM 93 N N9 . DG A 1 5 ? 3.495 32.997 15.062 1.00 23.62 ? 5 DG A N9 1
ATOM 94 C C8 . DG A 1 5 ? 3.642 31.648 15.311 1.00 25.67 ? 5 DG A C8 1
ATOM 95 N N7 . DG A 1 5 ? 2.718 31.154 16.059 1.00 23.63 ? 5 DG A N7 1
ATOM 96 C C5 . DG A 1 5 ? 1.891 32.251 16.322 1.00 24.12 ? 5 DG A C5 1
ATOM 97 C C6 . DG A 1 5 ? 0.736 32.350 17.137 1.00 22.95 ? 5 DG A C6 1
ATOM 98 O O6 . DG A 1 5 ? 0.114 31.476 17.743 1.00 19.62 ? 5 DG A O6 1
ATOM 99 N N1 . DG A 1 5 ? 0.290 33.632 17.203 1.00 20.89 ? 5 DG A N1 1
ATOM 100 C C2 . DG A 1 5 ? 0.860 34.705 16.572 1.00 23.04 ? 5 DG A C2 1
ATOM 101 N N2 . DG A 1 5 ? 0.256 35.879 16.787 1.00 24.26 ? 5 DG A N2 1
ATOM 102 N N3 . DG A 1 5 ? 1.940 34.626 15.792 1.00 24.95 ? 5 DG A N3 1
ATOM 103 C C4 . DG A 1 5 ? 2.389 33.368 15.717 1.00 24.24 ? 5 DG A C4 1
ATOM 104 P P . DC A 1 6 ? 8.233 34.655 16.761 1.00 37.07 ? 6 DC A P 1
ATOM 105 O OP1 . DC A 1 6 ? 9.551 35.317 16.660 1.00 38.36 ? 6 DC A OP1 1
ATOM 106 O OP2 . DC A 1 6 ? 8.191 33.328 17.389 1.00 35.46 ? 6 DC A OP2 1
ATOM 107 O "O5'" . DC A 1 6 ? 7.185 35.599 17.525 1.00 33.22 ? 6 DC A "O5'" 1
ATOM 108 C "C5'" . DC A 1 6 ? 7.156 36.982 17.326 1.00 25.32 ? 6 DC A "C5'" 1
ATOM 109 C "C4'" . DC A 1 6 ? 6.007 37.549 18.079 1.00 24.14 ? 6 DC A "C4'" 1
ATOM 110 O "O4'" . DC A 1 6 ? 4.849 36.893 17.614 1.00 29.66 ? 6 DC A "O4'" 1
ATOM 111 C "C3'" . DC A 1 6 ? 5.991 37.273 19.497 1.00 27.19 ? 6 DC A "C3'" 1
ATOM 112 O "O3'" . DC A 1 6 ? 6.872 38.174 20.068 1.00 37.31 ? 6 DC A "O3'" 1
ATOM 113 C "C2'" . DC A 1 6 ? 4.596 37.705 19.766 1.00 28.83 ? 6 DC A "C2'" 1
ATOM 114 C "C1'" . DC A 1 6 ? 3.915 36.872 18.672 1.00 28.69 ? 6 DC A "C1'" 1
ATOM 115 N N1 . DC A 1 6 ? 3.549 35.436 18.997 1.00 27.80 ? 6 DC A N1 1
ATOM 116 C C2 . DC A 1 6 ? 2.415 35.280 19.766 1.00 28.94 ? 6 DC A C2 1
ATOM 117 O O2 . DC A 1 6 ? 1.769 36.276 20.105 1.00 29.40 ? 6 DC A O2 1
ATOM 118 N N3 . DC A 1 6 ? 2.053 34.014 20.115 1.00 27.22 ? 6 DC A N3 1
ATOM 119 C C4 . DC A 1 6 ? 2.781 32.943 19.727 1.00 31.55 ? 6 DC A C4 1
ATOM 120 N N4 . DC A 1 6 ? 2.389 31.723 20.104 1.00 29.06 ? 6 DC A N4 1
ATOM 121 C C5 . DC A 1 6 ? 3.958 33.073 18.928 1.00 23.44 ? 6 DC A C5 1
ATOM 122 C C6 . DC A 1 6 ? 4.290 34.329 18.591 1.00 26.89 ? 6 DC A C6 1
ATOM 123 P P . DG A 1 7 ? 7.552 37.805 21.448 1.00 38.56 ? 7 DG A P 1
ATOM 124 O OP1 . DG A 1 7 ? 8.706 38.716 21.623 1.00 42.80 ? 7 DG A OP1 1
ATOM 125 O OP2 . DG A 1 7 ? 7.730 36.321 21.544 1.00 40.36 ? 7 DG A OP2 1
ATOM 126 O "O5'" . DG A 1 7 ? 6.375 38.272 22.400 1.00 34.89 ? 7 DG A "O5'" 1
ATOM 127 C "C5'" . DG A 1 7 ? 6.169 37.600 23.595 1.00 32.20 ? 7 DG A "C5'" 1
ATOM 128 C "C4'" . DG A 1 7 ? 4.844 37.985 24.106 1.00 33.02 ? 7 DG A "C4'" 1
ATOM 129 O "O4'" . DG A 1 7 ? 3.813 37.574 23.187 1.00 27.63 ? 7 DG A "O4'" 1
ATOM 130 C "C3'" . DG A 1 7 ? 4.638 37.153 25.352 1.00 36.92 ? 7 DG A "C3'" 1
ATOM 131 O "O3'" . DG A 1 7 ? 5.026 37.966 26.454 1.00 39.77 ? 7 DG A "O3'" 1
ATOM 132 C "C2'" . DG A 1 7 ? 3.132 37.057 25.342 1.00 30.27 ? 7 DG A "C2'" 1
ATOM 133 C "C1'" . DG A 1 7 ? 2.958 36.676 23.899 1.00 27.42 ? 7 DG A "C1'" 1
ATOM 134 N N9 . DG A 1 7 ? 3.288 35.230 23.629 1.00 20.23 ? 7 DG A N9 1
ATOM 135 C C8 . DG A 1 7 ? 4.202 34.659 22.787 1.00 18.77 ? 7 DG A C8 1
ATOM 136 N N7 . DG A 1 7 ? 4.050 33.381 22.640 1.00 20.86 ? 7 DG A N7 1
ATOM 137 C C5 . DG A 1 7 ? 2.958 33.078 23.446 1.00 20.28 ? 7 DG A C5 1
ATOM 138 C C6 . DG A 1 7 ? 2.270 31.840 23.645 1.00 24.11 ? 7 DG A C6 1
ATOM 139 O O6 . DG A 1 7 ? 2.478 30.717 23.163 1.00 30.42 ? 7 DG A O6 1
ATOM 140 N N1 . DG A 1 7 ? 1.210 32.010 24.493 1.00 18.33 ? 7 DG A N1 1
ATOM 141 C C2 . DG A 1 7 ? 0.842 33.201 25.080 1.00 18.72 ? 7 DG A C2 1
ATOM 142 N N2 . DG A 1 7 ? -0.161 33.151 25.929 1.00 18.41 ? 7 DG A N2 1
ATOM 143 N N3 . DG A 1 7 ? 1.456 34.338 24.889 1.00 20.10 ? 7 DG A N3 1
ATOM 144 C C4 . DG A 1 7 ? 2.508 34.201 24.058 1.00 18.28 ? 7 DG A C4 1
ATOM 145 P P . DC A 1 8 ? 6.182 37.512 27.447 1.00 41.00 ? 8 DC A P 1
ATOM 146 O OP1 . DC A 1 8 ? 6.342 38.750 28.260 1.00 46.89 ? 8 DC A OP1 1
ATOM 147 O OP2 . DC A 1 8 ? 7.305 36.922 26.680 1.00 40.04 ? 8 DC A OP2 1
ATOM 148 O "O5'" . DC A 1 8 ? 5.519 36.318 28.344 1.00 35.43 ? 8 DC A "O5'" 1
ATOM 149 C "C5'" . DC A 1 8 ? 4.437 36.702 29.179 1.00 29.38 ? 8 DC A "C5'" 1
ATOM 150 C "C4'" . DC A 1 8 ? 3.530 35.574 29.436 1.00 26.87 ? 8 DC A "C4'" 1
ATOM 151 O "O4'" . DC A 1 8 ? 3.233 34.987 28.212 1.00 29.42 ? 8 DC A "O4'" 1
ATOM 152 C "C3'" . DC A 1 8 ? 4.098 34.457 30.153 1.00 29.68 ? 8 DC A "C3'" 1
ATOM 153 O "O3'" . DC A 1 8 ? 4.129 34.871 31.483 1.00 37.44 ? 8 DC A "O3'" 1
ATOM 154 C "C2'" . DC A 1 8 ? 2.928 33.543 30.002 1.00 25.41 ? 8 DC A "C2'" 1
ATOM 155 C "C1'" . DC A 1 8 ? 2.681 33.712 28.548 1.00 26.69 ? 8 DC A "C1'" 1
ATOM 156 N N1 . DC A 1 8 ? 3.323 32.694 27.714 1.00 24.11 ? 8 DC A N1 1
ATOM 157 C C2 . DC A 1 8 ? 2.792 31.432 27.691 1.00 25.74 ? 8 DC A C2 1
ATOM 158 O O2 . DC A 1 8 ? 1.811 31.116 28.346 1.00 25.56 ? 8 DC A O2 1
ATOM 159 N N3 . DC A 1 8 ? 3.363 30.516 26.896 1.00 26.44 ? 8 DC A N3 1
ATOM 160 C C4 . DC A 1 8 ? 4.412 30.823 26.162 1.00 24.68 ? 8 DC A C4 1
ATOM 161 N N4 . DC A 1 8 ? 4.992 29.875 25.465 1.00 29.82 ? 8 DC A N4 1
ATOM 162 C C5 . DC A 1 8 ? 4.976 32.114 26.155 1.00 25.48 ? 8 DC A C5 1
ATOM 163 C C6 . DC A 1 8 ? 4.390 33.012 26.952 1.00 23.68 ? 8 DC A C6 1
ATOM 164 P P . DG A 1 9 ? 5.135 34.163 32.511 1.00 40.56 ? 9 DG A P 1
ATOM 165 O OP1 . DG A 1 9 ? 5.091 34.987 33.730 1.00 42.67 ? 9 DG A OP1 1
ATOM 166 O OP2 . DG A 1 9 ? 6.440 33.873 31.859 1.00 35.45 ? 9 DG A OP2 1
ATOM 167 O "O5'" . DG A 1 9 ? 4.377 32.785 32.796 1.00 37.76 ? 9 DG A "O5'" 1
ATOM 168 C "C5'" . DG A 1 9 ? 3.244 32.774 33.643 1.00 36.74 ? 9 DG A "C5'" 1
ATOM 169 C "C4'" . DG A 1 9 ? 2.682 31.367 33.615 1.00 40.34 ? 9 DG A "C4'" 1
ATOM 170 O "O4'" . DG A 1 9 ? 2.360 31.058 32.259 1.00 37.16 ? 9 DG A "O4'" 1
ATOM 171 C "C3'" . DG A 1 9 ? 3.635 30.253 34.034 1.00 39.85 ? 9 DG A "C3'" 1
ATOM 172 O "O3'" . DG A 1 9 ? 3.565 30.141 35.456 1.00 46.62 ? 9 DG A "O3'" 1
ATOM 173 C "C2'" . DG A 1 9 ? 2.857 29.084 33.437 1.00 41.33 ? 9 DG A "C2'" 1
ATOM 174 C "C1'" . DG A 1 9 ? 2.594 29.648 32.071 1.00 36.00 ? 9 DG A "C1'" 1
ATOM 175 N N9 . DG A 1 9 ? 3.682 29.391 31.094 1.00 27.31 ? 9 DG A N9 1
ATOM 176 C C8 . DG A 1 9 ? 4.655 30.213 30.594 1.00 22.50 ? 9 DG A C8 1
ATOM 177 N N7 . DG A 1 9 ? 5.272 29.673 29.602 1.00 22.70 ? 9 DG A N7 1
ATOM 178 C C5 . DG A 1 9 ? 4.678 28.415 29.439 1.00 20.34 ? 9 DG A C5 1
ATOM 179 C C6 . DG A 1 9 ? 4.973 27.353 28.565 1.00 21.43 ? 9 DG A C6 1
ATOM 180 O O6 . DG A 1 9 ? 5.750 27.321 27.616 1.00 27.48 ? 9 DG A O6 1
ATOM 181 N N1 . DG A 1 9 ? 4.211 26.226 28.805 1.00 21.90 ? 9 DG A N1 1
ATOM 182 C C2 . DG A 1 9 ? 3.253 26.130 29.770 1.00 24.21 ? 9 DG A C2 1
ATOM 183 N N2 . DG A 1 9 ? 2.615 24.960 29.878 1.00 19.46 ? 9 DG A N2 1
ATOM 184 N N3 . DG A 1 9 ? 2.965 27.147 30.584 1.00 24.24 ? 9 DG A N3 1
ATOM 185 C C4 . DG A 1 9 ? 3.722 28.246 30.355 1.00 22.83 ? 9 DG A C4 1
ATOM 186 P P . DC A 1 10 ? 4.789 29.632 36.369 1.00 44.13 ? 10 DC A P 1
ATOM 187 O OP1 . DC A 1 10 ? 4.470 29.991 37.770 1.00 51.22 ? 10 DC A OP1 1
ATOM 188 O OP2 . DC A 1 10 ? 6.046 30.134 35.764 1.00 48.12 ? 10 DC A OP2 1
ATOM 189 O "O5'" . DC A 1 10 ? 4.734 28.033 36.177 1.00 45.31 ? 10 DC A "O5'" 1
ATOM 190 C "C5'" . DC A 1 10 ? 3.647 27.200 36.593 1.00 40.03 ? 10 DC A "C5'" 1
ATOM 191 C "C4'" . DC A 1 10 ? 3.803 25.801 36.005 1.00 38.99 ? 10 DC A "C4'" 1
ATOM 192 O "O4'" . DC A 1 10 ? 3.573 25.808 34.588 1.00 33.76 ? 10 DC A "O4'" 1
ATOM 193 C "C3'" . DC A 1 10 ? 5.237 25.302 36.132 1.00 39.02 ? 10 DC A "C3'" 1
ATOM 194 O "O3'" . DC A 1 10 ? 5.565 24.993 37.485 1.00 42.61 ? 10 DC A "O3'" 1
ATOM 195 C "C2'" . DC A 1 10 ? 5.165 24.149 35.151 1.00 36.63 ? 10 DC A "C2'" 1
ATOM 196 C "C1'" . DC A 1 10 ? 4.436 24.841 33.992 1.00 31.88 ? 10 DC A "C1'" 1
ATOM 197 N N1 . DC A 1 10 ? 5.356 25.458 33.012 1.00 27.22 ? 10 DC A N1 1
ATOM 198 C C2 . DC A 1 10 ? 5.682 24.672 31.917 1.00 26.53 ? 10 DC A C2 1
ATOM 199 O O2 . DC A 1 10 ? 5.224 23.543 31.776 1.00 28.26 ? 10 DC A O2 1
ATOM 200 N N3 . DC A 1 10 ? 6.493 25.172 30.970 1.00 23.33 ? 10 DC A N3 1
ATOM 201 C C4 . DC A 1 10 ? 6.977 26.414 31.080 1.00 25.56 ? 10 DC A C4 1
ATOM 202 N N4 . DC A 1 10 ? 7.699 26.906 30.078 1.00 27.43 ? 10 DC A N4 1
ATOM 203 C C5 . DC A 1 10 ? 6.672 27.257 32.199 1.00 24.12 ? 10 DC A C5 1
ATOM 204 C C6 . DC A 1 10 ? 5.859 26.738 33.135 1.00 26.41 ? 10 DC A C6 1
HETATM 205 O O . HOH B 2 . ? 0.548 36.189 33.106 1.00 43.58 ? 11 HOH A O 1
HETATM 206 O O . HOH B 2 . ? 5.819 33.503 9.659 1.00 74.09 ? 12 HOH A O 1
HETATM 207 O O . HOH B 2 . ? -10.664 25.138 14.130 1.00 66.34 ? 13 HOH A O 1
HETATM 208 O O . HOH B 2 . ? -4.658 27.274 16.182 1.00 56.12 ? 14 HOH A O 1
HETATM 209 O O . HOH B 2 . ? -3.099 24.374 16.469 1.00 48.18 ? 15 HOH A O 1
HETATM 210 O O . HOH B 2 . ? 4.705 21.187 17.785 1.00 58.94 ? 16 HOH A O 1
HETATM 211 O O . HOH B 2 . ? 4.750 27.128 16.925 1.00 63.61 ? 17 HOH A O 1
HETATM 212 O O . HOH B 2 . ? 2.887 29.064 17.707 1.00 49.01 ? 18 HOH A O 1
HETATM 213 O O . HOH B 2 . ? 4.787 29.604 20.042 1.00 52.02 ? 19 HOH A O 1
HETATM 214 O O . HOH B 2 . ? 6.370 30.727 17.734 1.00 45.80 ? 20 HOH A O 1
HETATM 215 O O . HOH B 2 . ? 11.103 31.620 16.983 1.00 71.71 ? 21 HOH A O 1
HETATM 216 O O . HOH B 2 . ? 6.029 31.633 21.607 1.00 58.26 ? 22 HOH A O 1
HETATM 217 O O . HOH B 2 . ? 7.774 32.783 19.862 1.00 54.99 ? 23 HOH A O 1
HETATM 218 O O . HOH B 2 . ? 11.401 35.687 19.126 1.00 66.45 ? 24 HOH A O 1
HETATM 219 O O . HOH B 2 . ? 7.498 34.497 25.461 1.00 58.80 ? 25 HOH A O 1
HETATM 220 O O . HOH B 2 . ? 7.296 33.690 36.321 1.00 90.19 ? 26 HOH A O 1
HETATM 221 O O . HOH B 2 . ? 7.862 30.507 33.412 1.00 49.99 ? 27 HOH A O 1
HETATM 222 O O . HOH B 2 . ? 9.673 28.896 30.344 1.00 67.45 ? 28 HOH A O 1
HETATM 223 O O . HOH B 2 . ? 7.617 31.002 28.547 1.00 69.02 ? 29 HOH A O 1
HETATM 224 O O . HOH B 2 . ? 6.642 26.961 38.978 1.00 85.66 ? 30 HOH A O 1
HETATM 225 O O . HOH B 2 . ? 1.102 28.443 38.057 1.00 64.13 ? 31 HOH A O 1
HETATM 226 O O . HOH B 2 . ? 0.414 24.206 33.896 1.00 75.57 ? 32 HOH A O 1
HETATM 227 O O . HOH B 2 . ? 1.067 26.483 32.455 1.00 63.38 ? 33 HOH A O 1
HETATM 228 O O . HOH B 2 . ? -5.119 18.636 7.796 1.00 73.91 ? 34 HOH A O 1
HETATM 229 O O . HOH B 2 . ? 7.153 27.685 8.054 1.00 73.92 ? 35 HOH A O 1
HETATM 230 O O . HOH B 2 . ? 3.136 31.990 10.368 1.00 62.96 ? 36 HOH A O 1
HETATM 231 O O . HOH B 2 . ? 9.193 24.174 4.336 1.00 78.64 ? 37 HOH A O 1
HETATM 232 O O . HOH B 2 . ? 2.071 27.240 8.649 1.00 68.48 ? 38 HOH A O 1
HETATM 233 O O . HOH B 2 . ? 4.634 23.984 8.523 1.00 68.24 ? 39 HOH A O 1
HETATM 234 O O . HOH B 2 . ? -1.430 21.025 8.874 1.00 49.54 ? 40 HOH A O 1
HETATM 235 O O . HOH B 2 . ? 8.031 28.558 26.812 1.00 56.55 ? 41 HOH A O 1
HETATM 236 O O . HOH B 2 . ? -2.900 21.025 6.525 0.50 44.41 ? 42 HOH A O 1
HETATM 237 O O . HOH B 2 . ? 1.890 23.120 17.830 1.00 77.87 ? 43 HOH A O 1
HETATM 238 O O . HOH B 2 . ? 0.000 29.362 19.490 0.50 26.90 ? 44 HOH A O 1
HETATM 239 O O . HOH B 2 . ? -2.357 28.339 18.015 1.00 77.90 ? 45 HOH A O 1
HETATM 240 O O . HOH B 2 . ? 8.300 29.442 20.169 1.00 62.22 ? 46 HOH A O 1
HETATM 241 O O . HOH B 2 . ? 8.893 33.942 23.019 1.00 81.25 ? 47 HOH A O 1
HETATM 242 O O . HOH B 2 . ? 7.385 34.286 28.202 1.00 82.16 ? 48 HOH A O 1
HETATM 243 O O . HOH B 2 . ? 7.811 37.459 31.417 1.00 61.76 ? 49 HOH A O 1
HETATM 244 O O . HOH B 2 . ? 0.006 31.956 30.069 1.00 64.49 ? 50 HOH A O 1
HETATM 245 O O . HOH B 2 . ? -0.341 33.599 32.563 1.00 75.58 ? 51 HOH A O 1
#