data_317D
#
_entry.id 317D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 317D pdb_0000317d 10.2210/pdb317d/pdb
RCSB ADH078 ? ?
WWPDB D_1000178785 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1997-05-22
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-21
5 'Structure model' 1 4 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 5 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 5 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 317D
_pdbx_database_status.recvd_initial_deposition_date 1997-03-17
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Tippin, D.B.' 1
'Sundaralingam, M.' 2
#
_citation.id primary
_citation.title
;Structure of d(CCCTAGGG): comparison with nine isomorphous octamer sequences reveals four distinct patterns of sequence-dependent intermolecular interactions.
;
_citation.journal_abbrev 'Acta Crystallogr.,Sect.D'
_citation.journal_volume 52
_citation.page_first 997
_citation.page_last 1003
_citation.year 1996
_citation.journal_id_ASTM ABCRE6
_citation.country DK
_citation.journal_id_ISSN 0907-4449
_citation.journal_id_CSD 0766
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 15299609
_citation.pdbx_database_id_DOI 10.1107/S0907444996005033
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Tippin, D.B.' 1 ?
primary 'Sundaralingam, M.' 2 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*CP*CP*TP*AP*GP*GP*G)-3')
;
2427.605 1 ? ? ? ?
2 water nat water 18.015 46 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DC)(DT)(DA)(DG)(DG)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CCCTAGGG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DC n
1 3 DC n
1 4 DT n
1 5 DA n
1 6 DG n
1 7 DG n
1 8 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DC 2 2 2 DC C A . n
A 1 3 DC 3 3 3 DC C A . n
A 1 4 DT 4 4 4 DT T A . n
A 1 5 DA 5 5 5 DA A A . n
A 1 6 DG 6 6 6 DG G A . n
A 1 7 DG 7 7 7 DG G A . n
A 1 8 DG 8 8 8 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 9 9 HOH HOH A .
B 2 HOH 2 10 10 HOH HOH A .
B 2 HOH 3 11 11 HOH HOH A .
B 2 HOH 4 12 12 HOH HOH A .
B 2 HOH 5 13 13 HOH HOH A .
B 2 HOH 6 14 14 HOH HOH A .
B 2 HOH 7 15 15 HOH HOH A .
B 2 HOH 8 16 16 HOH HOH A .
B 2 HOH 9 17 17 HOH HOH A .
B 2 HOH 10 18 18 HOH HOH A .
B 2 HOH 11 19 19 HOH HOH A .
B 2 HOH 12 20 20 HOH HOH A .
B 2 HOH 13 21 21 HOH HOH A .
B 2 HOH 14 22 22 HOH HOH A .
B 2 HOH 15 23 23 HOH HOH A .
B 2 HOH 16 24 24 HOH HOH A .
B 2 HOH 17 25 25 HOH HOH A .
B 2 HOH 18 26 26 HOH HOH A .
B 2 HOH 19 27 27 HOH HOH A .
B 2 HOH 20 28 28 HOH HOH A .
B 2 HOH 21 29 29 HOH HOH A .
B 2 HOH 22 30 30 HOH HOH A .
B 2 HOH 23 31 31 HOH HOH A .
B 2 HOH 24 32 32 HOH HOH A .
B 2 HOH 25 33 33 HOH HOH A .
B 2 HOH 26 34 34 HOH HOH A .
B 2 HOH 27 35 35 HOH HOH A .
B 2 HOH 28 36 36 HOH HOH A .
B 2 HOH 29 37 37 HOH HOH A .
B 2 HOH 30 38 38 HOH HOH A .
B 2 HOH 31 39 39 HOH HOH A .
B 2 HOH 32 40 40 HOH HOH A .
B 2 HOH 33 41 41 HOH HOH A .
B 2 HOH 34 42 42 HOH HOH A .
B 2 HOH 35 43 43 HOH HOH A .
B 2 HOH 36 44 44 HOH HOH A .
B 2 HOH 37 45 45 HOH HOH A .
B 2 HOH 38 46 46 HOH HOH A .
B 2 HOH 39 47 47 HOH HOH A .
B 2 HOH 40 48 48 HOH HOH A .
B 2 HOH 41 49 49 HOH HOH A .
B 2 HOH 42 50 50 HOH HOH A .
B 2 HOH 43 51 51 HOH HOH A .
B 2 HOH 44 52 52 HOH HOH A .
B 2 HOH 45 53 53 HOH HOH A .
B 2 HOH 46 54 54 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
X-PLOR refinement . ? 1
XENGEN 'data reduction' 'V. 2.0' ? 2
#
_cell.entry_id 317D
_cell.length_a 42.220
_cell.length_b 42.220
_cell.length_c 24.900
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 317D
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
#
_exptl.entry_id 317D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.29
_exptl_crystal.density_percent_sol 46.18
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp 295.00
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, temperature 295.00K'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 'NA CACODYLATE' ? ? ?
1 3 1 MGCL2 ? ? ?
1 4 1 SPERMINE_HCL ? ? ?
1 5 2 WATER ? ? ?
1 6 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 295.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'AREA DETECTOR'
_diffrn_detector.type SIEMENS-NICOLET
_diffrn_detector.pdbx_collection_date 1994-03-01
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 317D
_reflns.observed_criterion_sigma_I 0.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high 1.900
_reflns.number_obs 1894
_reflns.number_all ?
_reflns.percent_possible_obs 99.900
_reflns.pdbx_Rmerge_I_obs 0.0290000
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 317D
_refine.ls_number_reflns_obs 1533
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.000
_refine.ls_d_res_high 1.900
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1640000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.1640000
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ADH012
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 161
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 46
_refine_hist.number_atoms_total 207
_refine_hist.d_res_high 1.900
_refine_hist.d_res_low 8.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 3.51 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 317D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 317D
_struct.title
;STRUCTURE OF D(CCTAGGG): COMPARISON WITH NINE ISOMORPHOUS OCTAMER SEQUENCES REVEALS FOUR DISTINCT PATTERNS OF SEQUENCE-DEPENDENT INTERMOLECULAR INTERACTIONS
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 317D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 317D
_struct_ref.pdbx_db_accession 317D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 317D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 317D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 1 A DG 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 1 A DG 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 1 A DG 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 5 A DT 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 5 A DT 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 3 N3 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 3 O2 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 3 N4 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 8 A DC 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 8 A DC 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 8 A DC 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.538 1.496 0.042 0.006 N
2 1 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 1.464 1.516 -0.052 0.008 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.90 108.30 5.60 0.30 N
2 1 P A DC 2 ? ? "O5'" A DC 2 ? ? "C5'" A DC 2 ? ? 131.57 120.90 10.67 1.60 N
3 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.22 108.30 2.92 0.30 N
4 1 C2 A DC 2 ? ? N3 A DC 2 ? ? C4 A DC 2 ? ? 123.27 119.90 3.37 0.50 N
5 1 C5 A DC 2 ? ? C6 A DC 2 ? ? N1 A DC 2 ? ? 124.49 121.00 3.49 0.50 N
6 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 114.10 108.30 5.80 0.30 N
7 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.62 108.30 3.32 0.30 N
8 1 C4 A DT 4 ? ? C5 A DT 4 ? ? C6 A DT 4 ? ? 121.76 118.00 3.76 0.60 N
9 1 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 118.52 122.30 -3.78 0.60 N
10 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.98 108.30 2.68 0.30 N
11 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 101.79 104.50 -2.71 0.40 N
12 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.03 108.30 2.73 0.30 N
13 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 112.39 108.30 4.09 0.30 N
14 1 C4 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 108.09 110.80 -2.71 0.40 N
15 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.80 108.30 3.50 0.30 N
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
HOH O O N N 144
HOH H1 H N N 145
HOH H2 H N N 146
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
#
_ndb_struct_conf_na.entry_id 317D
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 8 7_555 0.287 -0.352 -0.084 3.896 -10.922 -5.755 1 A_DC1:DG8_A A 1 ? A 8 ? 19 1
1 A DC 2 1_555 A DG 7 7_555 0.378 -0.112 -0.127 12.020 -12.284 2.396 2 A_DC2:DG7_A A 2 ? A 7 ? 19 1
1 A DC 3 1_555 A DG 6 7_555 0.343 -0.282 -0.226 5.717 -15.602 -1.377 3 A_DC3:DG6_A A 3 ? A 6 ? 19 1
1 A DT 4 1_555 A DA 5 7_555 0.048 -0.216 0.252 -4.250 -11.097 -3.747 4 A_DT4:DA5_A A 4 ? A 5 ? 20 1
1 A DA 5 1_555 A DT 4 7_555 -0.048 -0.216 0.252 4.250 -11.097 -3.747 5 A_DA5:DT4_A A 5 ? A 4 ? 20 1
1 A DG 6 1_555 A DC 3 7_555 -0.343 -0.282 -0.226 -5.717 -15.602 -1.377 6 A_DG6:DC3_A A 6 ? A 3 ? 19 1
1 A DG 7 1_555 A DC 2 7_555 -0.378 -0.112 -0.127 -12.020 -12.284 2.396 7 A_DG7:DC2_A A 7 ? A 2 ? 19 1
1 A DG 8 1_555 A DC 1 7_555 -0.287 -0.352 -0.084 -3.896 -10.922 -5.755 8 A_DG8:DC1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 8 7_555 A DC 2 1_555 A DG 7 7_555 0.792 -1.280 3.077 0.868 8.608 37.646 -2.896 -1.102 2.747 13.129 -1.324
38.592 1 AA_DC1DC2:DG7DG8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A DC 2 1_555 A DG 7 7_555 A DC 3 1_555 A DG 6 7_555 -0.691 -1.823 3.491 -0.738 7.056 28.606 -5.100 1.201 2.982 14.010 1.466
29.455 2 AA_DC2DC3:DG6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DC 3 1_555 A DG 6 7_555 A DT 4 1_555 A DA 5 7_555 -0.230 -1.269 3.630 -2.394 4.244 34.818 -2.792 -0.008 3.464 7.049 3.977
35.147 3 AA_DC3DT4:DA5DG6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A DT 4 1_555 A DA 5 7_555 A DA 5 1_555 A DT 4 7_555 0.000 -1.636 3.026 0.000 4.864 27.832 -4.352 0.000 2.707 10.015 0.000
28.245 4 AA_DT4DA5:DT4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DA 5 1_555 A DT 4 7_555 A DG 6 1_555 A DC 3 7_555 0.230 -1.269 3.630 2.394 4.244 34.818 -2.792 0.008 3.464 7.049 -3.977
35.147 5 AA_DA5DG6:DC3DT4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A DG 6 1_555 A DC 3 7_555 A DG 7 1_555 A DC 2 7_555 0.691 -1.823 3.491 0.738 7.056 28.606 -5.100 -1.201 2.982 14.010 -1.466
29.455 6 AA_DG6DG7:DC2DC3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A DG 7 1_555 A DC 2 7_555 A DG 8 1_555 A DC 1 7_555 -0.792 -1.280 3.077 -0.868 8.608 37.646 -2.896 1.102 2.747 13.129 1.324
38.592 7 AA_DG7DG8:DC1DC2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_pdbx_initial_refinement_model.accession_code 1VT5
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.details ADH012
#
_atom_sites.entry_id 317D
_atom_sites.fract_transf_matrix[1][1] 0.023685
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023685
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.040161
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 6.678 -1.246 -5.713 1.00 34.51 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 6.442 -2.584 -5.279 1.00 27.87 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 7.690 -3.128 -4.603 1.00 29.03 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 8.751 -3.093 -5.570 1.00 26.74 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 8.185 -2.243 -3.448 1.00 27.41 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 7.479 -2.647 -2.249 1.00 27.15 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 9.570 -2.732 -3.363 1.00 24.28 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 9.934 -2.760 -4.862 1.00 25.18 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 10.595 -1.538 -5.347 1.00 24.99 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 11.928 -1.377 -5.000 1.00 24.79 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 12.537 -2.253 -4.377 1.00 26.12 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 12.563 -0.252 -5.435 1.00 24.79 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 11.903 0.654 -6.163 1.00 22.68 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 12.532 1.735 -6.563 1.00 22.34 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 10.554 0.521 -6.541 1.00 20.31 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 9.933 -0.587 -6.102 1.00 25.03 ? 1 DC A C6 1
ATOM 17 P P . DC A 1 2 ? 7.161 -1.725 -0.981 1.00 25.89 ? 2 DC A P 1
ATOM 18 O OP1 . DC A 1 2 ? 6.216 -2.491 -0.191 1.00 31.89 ? 2 DC A OP1 1
ATOM 19 O OP2 . DC A 1 2 ? 6.831 -0.363 -1.414 1.00 27.50 ? 2 DC A OP2 1
ATOM 20 O "O5'" . DC A 1 2 ? 8.511 -1.581 -0.160 1.00 27.82 ? 2 DC A "O5'" 1
ATOM 21 C "C5'" . DC A 1 2 ? 9.174 -2.463 0.693 1.00 27.79 ? 2 DC A "C5'" 1
ATOM 22 C "C4'" . DC A 1 2 ? 10.604 -2.023 0.957 1.00 27.76 ? 2 DC A "C4'" 1
ATOM 23 O "O4'" . DC A 1 2 ? 11.212 -1.892 -0.303 1.00 25.86 ? 2 DC A "O4'" 1
ATOM 24 C "C3'" . DC A 1 2 ? 10.823 -0.705 1.552 1.00 28.58 ? 2 DC A "C3'" 1
ATOM 25 O "O3'" . DC A 1 2 ? 10.686 -0.838 2.931 1.00 29.86 ? 2 DC A "O3'" 1
ATOM 26 C "C2'" . DC A 1 2 ? 12.296 -0.499 1.215 1.00 26.47 ? 2 DC A "C2'" 1
ATOM 27 C "C1'" . DC A 1 2 ? 12.242 -0.871 -0.244 1.00 23.54 ? 2 DC A "C1'" 1
ATOM 28 N N1 . DC A 1 2 ? 11.988 0.218 -1.252 1.00 24.96 ? 2 DC A N1 1
ATOM 29 C C2 . DC A 1 2 ? 13.037 0.978 -1.621 1.00 25.12 ? 2 DC A C2 1
ATOM 30 O O2 . DC A 1 2 ? 14.130 0.847 -1.078 1.00 27.33 ? 2 DC A O2 1
ATOM 31 N N3 . DC A 1 2 ? 12.825 1.917 -2.586 1.00 23.55 ? 2 DC A N3 1
ATOM 32 C C4 . DC A 1 2 ? 11.643 2.122 -3.156 1.00 22.23 ? 2 DC A C4 1
ATOM 33 N N4 . DC A 1 2 ? 11.500 3.054 -4.076 1.00 20.68 ? 2 DC A N4 1
ATOM 34 C C5 . DC A 1 2 ? 10.535 1.371 -2.794 1.00 20.24 ? 2 DC A C5 1
ATOM 35 C C6 . DC A 1 2 ? 10.760 0.443 -1.855 1.00 22.75 ? 2 DC A C6 1
ATOM 36 P P . DC A 1 3 ? 10.189 0.510 3.694 1.00 32.60 ? 3 DC A P 1
ATOM 37 O OP1 . DC A 1 3 ? 9.831 0.011 5.017 1.00 36.81 ? 3 DC A OP1 1
ATOM 38 O OP2 . DC A 1 3 ? 9.154 1.294 2.967 1.00 33.43 ? 3 DC A OP2 1
ATOM 39 O "O5'" . DC A 1 3 ? 11.524 1.396 3.824 1.00 31.77 ? 3 DC A "O5'" 1
ATOM 40 C "C5'" . DC A 1 3 ? 12.628 0.911 4.574 1.00 30.93 ? 3 DC A "C5'" 1
ATOM 41 C "C4'" . DC A 1 3 ? 13.871 1.720 4.234 1.00 31.52 ? 3 DC A "C4'" 1
ATOM 42 O "O4'" . DC A 1 3 ? 14.167 1.733 2.808 1.00 30.13 ? 3 DC A "O4'" 1
ATOM 43 C "C3'" . DC A 1 3 ? 13.692 3.187 4.605 1.00 30.18 ? 3 DC A "C3'" 1
ATOM 44 O "O3'" . DC A 1 3 ? 14.047 3.268 6.010 1.00 30.83 ? 3 DC A "O3'" 1
ATOM 45 C "C2'" . DC A 1 3 ? 14.826 3.781 3.772 1.00 28.85 ? 3 DC A "C2'" 1
ATOM 46 C "C1'" . DC A 1 3 ? 14.666 3.047 2.466 1.00 26.52 ? 3 DC A "C1'" 1
ATOM 47 N N1 . DC A 1 3 ? 13.840 3.766 1.492 1.00 21.29 ? 3 DC A N1 1
ATOM 48 C C2 . DC A 1 3 ? 14.442 4.753 0.758 1.00 23.00 ? 3 DC A C2 1
ATOM 49 O O2 . DC A 1 3 ? 15.566 5.171 1.014 1.00 23.11 ? 3 DC A O2 1
ATOM 50 N N3 . DC A 1 3 ? 13.759 5.332 -0.246 1.00 21.01 ? 3 DC A N3 1
ATOM 51 C C4 . DC A 1 3 ? 12.537 4.976 -0.503 1.00 17.78 ? 3 DC A C4 1
ATOM 52 N N4 . DC A 1 3 ? 11.919 5.568 -1.509 1.00 21.06 ? 3 DC A N4 1
ATOM 53 C C5 . DC A 1 3 ? 11.881 3.985 0.233 1.00 18.94 ? 3 DC A C5 1
ATOM 54 C C6 . DC A 1 3 ? 12.581 3.415 1.220 1.00 20.31 ? 3 DC A C6 1
ATOM 55 P P . DT A 1 4 ? 13.600 4.526 6.952 1.00 32.76 ? 4 DT A P 1
ATOM 56 O OP1 . DT A 1 4 ? 14.041 4.264 8.332 1.00 35.70 ? 4 DT A OP1 1
ATOM 57 O OP2 . DT A 1 4 ? 12.164 4.796 6.689 1.00 28.95 ? 4 DT A OP2 1
ATOM 58 O "O5'" . DT A 1 4 ? 14.518 5.726 6.417 1.00 27.67 ? 4 DT A "O5'" 1
ATOM 59 C "C5'" . DT A 1 4 ? 15.884 5.883 6.767 1.00 26.31 ? 4 DT A "C5'" 1
ATOM 60 C "C4'" . DT A 1 4 ? 16.460 7.083 6.040 1.00 27.95 ? 4 DT A "C4'" 1
ATOM 61 O "O4'" . DT A 1 4 ? 16.288 6.939 4.608 1.00 24.53 ? 4 DT A "O4'" 1
ATOM 62 C "C3'" . DT A 1 4 ? 15.661 8.319 6.373 1.00 27.47 ? 4 DT A "C3'" 1
ATOM 63 O "O3'" . DT A 1 4 ? 16.143 8.828 7.634 1.00 28.84 ? 4 DT A "O3'" 1
ATOM 64 C "C2'" . DT A 1 4 ? 16.041 9.223 5.176 1.00 25.61 ? 4 DT A "C2'" 1
ATOM 65 C "C1'" . DT A 1 4 ? 15.988 8.222 4.039 1.00 22.20 ? 4 DT A "C1'" 1
ATOM 66 N N1 . DT A 1 4 ? 14.681 8.208 3.302 1.00 20.59 ? 4 DT A N1 1
ATOM 67 C C2 . DT A 1 4 ? 14.492 9.133 2.299 1.00 16.78 ? 4 DT A C2 1
ATOM 68 O O2 . DT A 1 4 ? 15.224 10.084 2.106 1.00 18.01 ? 4 DT A O2 1
ATOM 69 N N3 . DT A 1 4 ? 13.347 9.043 1.583 1.00 18.29 ? 4 DT A N3 1
ATOM 70 C C4 . DT A 1 4 ? 12.370 8.127 1.784 1.00 17.98 ? 4 DT A C4 1
ATOM 71 O O4 . DT A 1 4 ? 11.385 8.088 1.065 1.00 20.42 ? 4 DT A O4 1
ATOM 72 C C5 . DT A 1 4 ? 12.624 7.236 2.849 1.00 20.23 ? 4 DT A C5 1
ATOM 73 C C7 . DT A 1 4 ? 11.519 6.238 3.233 1.00 22.39 ? 4 DT A C7 1
ATOM 74 C C6 . DT A 1 4 ? 13.737 7.294 3.551 1.00 16.91 ? 4 DT A C6 1
ATOM 75 P P . DA A 1 5 ? 15.303 9.957 8.459 1.00 29.63 ? 5 DA A P 1
ATOM 76 O OP1 . DA A 1 5 ? 16.071 10.016 9.740 1.00 32.85 ? 5 DA A OP1 1
ATOM 77 O OP2 . DA A 1 5 ? 13.874 9.662 8.424 1.00 28.70 ? 5 DA A OP2 1
ATOM 78 O "O5'" . DA A 1 5 ? 15.608 11.277 7.654 1.00 25.63 ? 5 DA A "O5'" 1
ATOM 79 C "C5'" . DA A 1 5 ? 14.676 12.266 7.377 1.00 24.47 ? 5 DA A "C5'" 1
ATOM 80 C "C4'" . DA A 1 5 ? 15.150 13.247 6.302 1.00 22.68 ? 5 DA A "C4'" 1
ATOM 81 O "O4'" . DA A 1 5 ? 15.310 12.585 5.035 1.00 23.45 ? 5 DA A "O4'" 1
ATOM 82 C "C3'" . DA A 1 5 ? 14.125 14.278 6.046 1.00 21.24 ? 5 DA A "C3'" 1
ATOM 83 O "O3'" . DA A 1 5 ? 14.455 15.371 6.918 1.00 27.14 ? 5 DA A "O3'" 1
ATOM 84 C "C2'" . DA A 1 5 ? 14.503 14.652 4.578 1.00 18.94 ? 5 DA A "C2'" 1
ATOM 85 C "C1'" . DA A 1 5 ? 14.645 13.308 3.990 1.00 17.05 ? 5 DA A "C1'" 1
ATOM 86 N N9 . DA A 1 5 ? 13.371 12.661 3.629 1.00 15.49 ? 5 DA A N9 1
ATOM 87 C C8 . DA A 1 5 ? 12.745 11.570 4.166 1.00 12.96 ? 5 DA A C8 1
ATOM 88 N N7 . DA A 1 5 ? 11.681 11.196 3.556 1.00 14.48 ? 5 DA A N7 1
ATOM 89 C C5 . DA A 1 5 ? 11.560 12.107 2.529 1.00 14.02 ? 5 DA A C5 1
ATOM 90 C C6 . DA A 1 5 ? 10.661 12.176 1.453 1.00 11.84 ? 5 DA A C6 1
ATOM 91 N N6 . DA A 1 5 ? 9.686 11.272 1.266 1.00 11.88 ? 5 DA A N6 1
ATOM 92 N N1 . DA A 1 5 ? 10.866 13.123 0.550 1.00 12.16 ? 5 DA A N1 1
ATOM 93 C C2 . DA A 1 5 ? 11.905 13.939 0.690 1.00 13.81 ? 5 DA A C2 1
ATOM 94 N N3 . DA A 1 5 ? 12.833 13.963 1.646 1.00 17.30 ? 5 DA A N3 1
ATOM 95 C C4 . DA A 1 5 ? 12.588 12.999 2.559 1.00 14.32 ? 5 DA A C4 1
ATOM 96 P P . DG A 1 6 ? 13.348 16.472 7.498 1.00 29.30 ? 6 DG A P 1
ATOM 97 O OP1 . DG A 1 6 ? 14.238 17.329 8.301 1.00 32.96 ? 6 DG A OP1 1
ATOM 98 O OP2 . DG A 1 6 ? 12.139 15.796 8.034 1.00 22.69 ? 6 DG A OP2 1
ATOM 99 O "O5'" . DG A 1 6 ? 12.897 17.352 6.254 1.00 27.01 ? 6 DG A "O5'" 1
ATOM 100 C "C5'" . DG A 1 6 ? 13.682 18.379 5.580 1.00 25.39 ? 6 DG A "C5'" 1
ATOM 101 C "C4'" . DG A 1 6 ? 12.961 18.745 4.262 1.00 24.96 ? 6 DG A "C4'" 1
ATOM 102 O "O4'" . DG A 1 6 ? 12.897 17.555 3.489 1.00 23.69 ? 6 DG A "O4'" 1
ATOM 103 C "C3'" . DG A 1 6 ? 11.514 19.041 4.487 1.00 24.71 ? 6 DG A "C3'" 1
ATOM 104 O "O3'" . DG A 1 6 ? 11.407 20.411 4.891 1.00 34.34 ? 6 DG A "O3'" 1
ATOM 105 C "C2'" . DG A 1 6 ? 11.027 18.899 3.114 1.00 19.39 ? 6 DG A "C2'" 1
ATOM 106 C "C1'" . DG A 1 6 ? 11.682 17.595 2.785 1.00 18.41 ? 6 DG A "C1'" 1
ATOM 107 N N9 . DG A 1 6 ? 10.833 16.480 3.150 1.00 15.94 ? 6 DG A N9 1
ATOM 108 C C8 . DG A 1 6 ? 10.884 15.590 4.171 1.00 11.84 ? 6 DG A C8 1
ATOM 109 N N7 . DG A 1 6 ? 9.955 14.705 4.126 1.00 12.92 ? 6 DG A N7 1
ATOM 110 C C5 . DG A 1 6 ? 9.222 15.011 3.015 1.00 15.30 ? 6 DG A C5 1
ATOM 111 C C6 . DG A 1 6 ? 8.096 14.366 2.471 1.00 16.24 ? 6 DG A C6 1
ATOM 112 O O6 . DG A 1 6 ? 7.525 13.371 2.919 1.00 17.86 ? 6 DG A O6 1
ATOM 113 N N1 . DG A 1 6 ? 7.648 15.007 1.314 1.00 15.83 ? 6 DG A N1 1
ATOM 114 C C2 . DG A 1 6 ? 8.236 16.110 0.736 1.00 14.61 ? 6 DG A C2 1
ATOM 115 N N2 . DG A 1 6 ? 7.637 16.640 -0.347 1.00 18.22 ? 6 DG A N2 1
ATOM 116 N N3 . DG A 1 6 ? 9.309 16.718 1.250 1.00 14.23 ? 6 DG A N3 1
ATOM 117 C C4 . DG A 1 6 ? 9.742 16.107 2.400 1.00 16.00 ? 6 DG A C4 1
ATOM 118 P P . DG A 1 7 ? 10.195 20.961 5.871 1.00 38.54 ? 7 DG A P 1
ATOM 119 O OP1 . DG A 1 7 ? 10.596 22.388 6.113 1.00 37.41 ? 7 DG A OP1 1
ATOM 120 O OP2 . DG A 1 7 ? 9.886 19.919 6.918 1.00 32.40 ? 7 DG A OP2 1
ATOM 121 O "O5'" . DG A 1 7 ? 8.812 20.961 4.980 1.00 31.65 ? 7 DG A "O5'" 1
ATOM 122 C "C5'" . DG A 1 7 ? 8.625 21.781 3.885 1.00 28.54 ? 7 DG A "C5'" 1
ATOM 123 C "C4'" . DG A 1 7 ? 7.528 21.179 3.048 1.00 24.56 ? 7 DG A "C4'" 1
ATOM 124 O "O4'" . DG A 1 7 ? 7.921 19.874 2.770 1.00 22.17 ? 7 DG A "O4'" 1
ATOM 125 C "C3'" . DG A 1 7 ? 6.140 21.048 3.595 1.00 23.03 ? 7 DG A "C3'" 1
ATOM 126 O "O3'" . DG A 1 7 ? 5.535 22.302 3.404 1.00 25.12 ? 7 DG A "O3'" 1
ATOM 127 C "C2'" . DG A 1 7 ? 5.556 20.156 2.564 1.00 21.74 ? 7 DG A "C2'" 1
ATOM 128 C "C1'" . DG A 1 7 ? 6.711 19.187 2.380 1.00 21.09 ? 7 DG A "C1'" 1
ATOM 129 N N9 . DG A 1 7 ? 6.435 18.031 3.219 1.00 18.64 ? 7 DG A N9 1
ATOM 130 C C8 . DG A 1 7 ? 7.113 17.563 4.283 1.00 15.67 ? 7 DG A C8 1
ATOM 131 N N7 . DG A 1 7 ? 6.615 16.440 4.700 1.00 17.23 ? 7 DG A N7 1
ATOM 132 C C5 . DG A 1 7 ? 5.543 16.143 3.886 1.00 15.85 ? 7 DG A C5 1
ATOM 133 C C6 . DG A 1 7 ? 4.628 15.048 3.887 1.00 17.81 ? 7 DG A C6 1
ATOM 134 O O6 . DG A 1 7 ? 4.627 14.082 4.621 1.00 20.63 ? 7 DG A O6 1
ATOM 135 N N1 . DG A 1 7 ? 3.662 15.141 2.898 1.00 15.93 ? 7 DG A N1 1
ATOM 136 C C2 . DG A 1 7 ? 3.616 16.188 1.999 1.00 17.91 ? 7 DG A C2 1
ATOM 137 N N2 . DG A 1 7 ? 2.670 16.167 1.039 1.00 18.72 ? 7 DG A N2 1
ATOM 138 N N3 . DG A 1 7 ? 4.504 17.212 2.016 1.00 18.44 ? 7 DG A N3 1
ATOM 139 C C4 . DG A 1 7 ? 5.426 17.122 2.978 1.00 17.05 ? 7 DG A C4 1
ATOM 140 P P . DG A 1 8 ? 4.149 22.779 4.016 1.00 28.41 ? 8 DG A P 1
ATOM 141 O OP1 . DG A 1 8 ? 4.107 24.204 3.586 1.00 29.47 ? 8 DG A OP1 1
ATOM 142 O OP2 . DG A 1 8 ? 4.083 22.350 5.416 1.00 30.18 ? 8 DG A OP2 1
ATOM 143 O "O5'" . DG A 1 8 ? 2.929 21.980 3.299 1.00 28.13 ? 8 DG A "O5'" 1
ATOM 144 C "C5'" . DG A 1 8 ? 2.672 22.277 1.931 1.00 29.55 ? 8 DG A "C5'" 1
ATOM 145 C "C4'" . DG A 1 8 ? 1.488 21.654 1.367 1.00 29.75 ? 8 DG A "C4'" 1
ATOM 146 O "O4'" . DG A 1 8 ? 1.649 20.241 1.536 1.00 27.71 ? 8 DG A "O4'" 1
ATOM 147 C "C3'" . DG A 1 8 ? 0.227 22.106 2.107 1.00 32.13 ? 8 DG A "C3'" 1
ATOM 148 O "O3'" . DG A 1 8 ? -0.824 22.167 1.144 1.00 38.40 ? 8 DG A "O3'" 1
ATOM 149 C "C2'" . DG A 1 8 ? 0.032 20.991 3.141 1.00 33.21 ? 8 DG A "C2'" 1
ATOM 150 C "C1'" . DG A 1 8 ? 0.588 19.747 2.399 1.00 28.28 ? 8 DG A "C1'" 1
ATOM 151 N N9 . DG A 1 8 ? 1.100 18.816 3.416 1.00 21.59 ? 8 DG A N9 1
ATOM 152 C C8 . DG A 1 8 ? 2.165 18.989 4.211 1.00 19.01 ? 8 DG A C8 1
ATOM 153 N N7 . DG A 1 8 ? 2.409 17.975 4.968 1.00 18.52 ? 8 DG A N7 1
ATOM 154 C C5 . DG A 1 8 ? 1.401 17.054 4.630 1.00 19.66 ? 8 DG A C5 1
ATOM 155 C C6 . DG A 1 8 ? 1.157 15.712 5.093 1.00 20.29 ? 8 DG A C6 1
ATOM 156 O O6 . DG A 1 8 ? 1.710 15.115 6.022 1.00 21.86 ? 8 DG A O6 1
ATOM 157 N N1 . DG A 1 8 ? 0.105 15.096 4.453 1.00 17.92 ? 8 DG A N1 1
ATOM 158 C C2 . DG A 1 8 ? -0.647 15.734 3.494 1.00 18.77 ? 8 DG A C2 1
ATOM 159 N N2 . DG A 1 8 ? -1.666 15.023 3.020 1.00 21.70 ? 8 DG A N2 1
ATOM 160 N N3 . DG A 1 8 ? -0.446 16.981 3.063 1.00 16.90 ? 8 DG A N3 1
ATOM 161 C C4 . DG A 1 8 ? 0.596 17.581 3.677 1.00 18.54 ? 8 DG A C4 1
HETATM 162 O O . HOH B 2 . ? 4.466 15.357 7.499 1.00 35.84 ? 9 HOH A O 1
HETATM 163 O O . HOH B 2 . ? 4.490 18.554 6.652 1.00 28.10 ? 10 HOH A O 1
HETATM 164 O O . HOH B 2 . ? 4.184 18.602 -0.203 1.00 24.66 ? 11 HOH A O 1
HETATM 165 O O . HOH B 2 . ? 16.549 17.563 2.998 1.00 28.85 ? 12 HOH A O 1
HETATM 166 O O . HOH B 2 . ? 8.936 6.443 0.755 1.00 45.26 ? 13 HOH A O 1
HETATM 167 O O . HOH B 2 . ? 14.763 15.686 1.381 1.00 26.66 ? 14 HOH A O 1
HETATM 168 O O . HOH B 2 . ? 10.938 4.115 -7.698 1.00 51.35 ? 15 HOH A O 1
HETATM 169 O O . HOH B 2 . ? 7.090 14.848 6.971 1.00 47.34 ? 16 HOH A O 1
HETATM 170 O O . HOH B 2 . ? 8.880 4.582 -1.730 1.00 51.53 ? 17 HOH A O 1
HETATM 171 O O . HOH B 2 . ? 7.663 11.633 4.791 1.00 35.00 ? 18 HOH A O 1
HETATM 172 O O . HOH B 2 . ? 18.455 18.908 1.486 1.00 55.96 ? 19 HOH A O 1
HETATM 173 O O . HOH B 2 . ? 8.892 3.924 -5.373 1.00 39.76 ? 20 HOH A O 1
HETATM 174 O O . HOH B 2 . ? 19.074 5.846 9.058 1.00 29.71 ? 21 HOH A O 1
HETATM 175 O O . HOH B 2 . ? 6.183 0.032 -8.402 1.00 56.09 ? 22 HOH A O 1
HETATM 176 O O . HOH B 2 . ? 7.161 1.164 -3.763 1.00 37.67 ? 23 HOH A O 1
HETATM 177 O O . HOH B 2 . ? 16.889 12.281 11.698 1.00 45.45 ? 24 HOH A O 1
HETATM 178 O O . HOH B 2 . ? 6.217 -3.661 3.159 1.00 42.14 ? 25 HOH A O 1
HETATM 179 O O . HOH B 2 . ? 9.722 16.914 7.425 1.00 50.47 ? 26 HOH A O 1
HETATM 180 O O . HOH B 2 . ? 7.503 8.815 3.316 1.00 40.32 ? 27 HOH A O 1
HETATM 181 O O . HOH B 2 . ? 8.596 2.518 0.315 1.00 45.48 ? 28 HOH A O 1
HETATM 182 O O . HOH B 2 . ? 14.039 3.324 11.570 1.00 47.76 ? 29 HOH A O 1
HETATM 183 O O . HOH B 2 . ? 11.759 7.900 6.861 1.00 40.04 ? 30 HOH A O 1
HETATM 184 O O . HOH B 2 . ? 9.773 9.422 4.768 1.00 36.46 ? 31 HOH A O 1
HETATM 185 O O . HOH B 2 . ? 15.412 24.649 5.679 1.00 47.34 ? 32 HOH A O 1
HETATM 186 O O . HOH B 2 . ? 5.925 21.221 7.103 1.00 53.44 ? 33 HOH A O 1
HETATM 187 O O . HOH B 2 . ? 10.086 12.820 6.545 1.00 44.43 ? 34 HOH A O 1
HETATM 188 O O . HOH B 2 . ? 17.404 0.691 2.794 1.00 33.11 ? 35 HOH A O 1
HETATM 189 O O . HOH B 2 . ? 15.990 -1.030 0.693 1.00 45.92 ? 36 HOH A O 1
HETATM 190 O O . HOH B 2 . ? 17.170 3.148 9.175 1.00 40.90 ? 37 HOH A O 1
HETATM 191 O O . HOH B 2 . ? 11.649 19.410 8.934 1.00 35.89 ? 38 HOH A O 1
HETATM 192 O O . HOH B 2 . ? 18.155 8.350 10.040 1.00 46.67 ? 39 HOH A O 1
HETATM 193 O O . HOH B 2 . ? -2.450 17.776 1.162 1.00 42.61 ? 40 HOH A O 1
HETATM 194 O O . HOH B 2 . ? 13.878 7.075 10.559 1.00 60.90 ? 41 HOH A O 1
HETATM 195 O O . HOH B 2 . ? 21.588 26.003 7.394 1.00 62.28 ? 42 HOH A O 1
HETATM 196 O O . HOH B 2 . ? 18.916 20.967 5.977 1.00 65.12 ? 43 HOH A O 1
HETATM 197 O O . HOH B 2 . ? 5.859 0.198 4.024 1.00 71.70 ? 44 HOH A O 1
HETATM 198 O O . HOH B 2 . ? 24.008 17.650 10.039 1.00 53.18 ? 45 HOH A O 1
HETATM 199 O O . HOH B 2 . ? 6.866 2.697 -6.035 1.00 60.92 ? 46 HOH A O 1
HETATM 200 O O . HOH B 2 . ? 1.663 18.854 -0.718 1.00 46.99 ? 47 HOH A O 1
HETATM 201 O O . HOH B 2 . ? -2.336 20.403 -0.268 1.00 59.56 ? 48 HOH A O 1
HETATM 202 O O . HOH B 2 . ? 6.936 18.548 7.859 1.00 59.45 ? 49 HOH A O 1
HETATM 203 O O . HOH B 2 . ? 17.323 5.404 11.429 1.00 55.59 ? 50 HOH A O 1
HETATM 204 O O . HOH B 2 . ? 15.989 0.427 8.657 1.00 51.84 ? 51 HOH A O 1
HETATM 205 O O . HOH B 2 . ? 10.123 25.468 8.529 1.00 59.22 ? 52 HOH A O 1
HETATM 206 O O . HOH B 2 . ? 9.684 0.628 8.281 1.00 56.03 ? 53 HOH A O 1
HETATM 207 O O . HOH B 2 . ? 4.963 -0.227 1.565 1.00 60.29 ? 54 HOH A O 1
#