data_304D
#
_entry.id 304D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 304D pdb_0000304d 10.2210/pdb304d/pdb
RCSB GDLB49 ? ?
WWPDB D_1000178772 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1997-09-25
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-21
5 'Structure model' 1 4 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 5 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_site
5 5 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 304D
_pdbx_database_status.recvd_initial_deposition_date 1997-01-03
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Chen, X.' 1
'Ramakrishnan, B.' 2
'Sundaralingam, M.' 3
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'Crystal structures of the side-by-side binding of distamycin to AT-containing DNA octamers d(ICITACIC) and d(ICATATIC).'
J.Mol.Biol. 267 1157 1170 1997 JMOBAK UK 0022-2836 0070 ? 9150404 10.1006/jmbi.1997.0941
1 'Binding of two Distamycin A Molecules in the Minor Groove of an Alternating B-DNA'
Nat.Struct.Biol. 1 169 175 1994 NSBIEW US 1072-8368 2024 ? ? ?
2 'Crystal Structures of B-Form DNA-RNA Chimers Complexed with Distamycin'
Nat.Struct.Biol. 2 733 735 1995 NSBIEW US 1072-8368 2024 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Chen, X.' 1 ?
primary 'Ramakrishnan, B.' 2 ?
primary 'Sundaralingam, M.' 3 ?
1 'Chen, X.' 4 ?
1 'Ramakrishnan, B.' 5 ?
1 'Rao, S.T.' 6 ?
1 'Sundaralingam, M.' 7 ?
2 'Chen, X.' 8 ?
2 'Ramakrishnan, B.' 9 ?
2 'Sundaralingam, M.' 10 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*IP*CP*AP*TP*AP*TP*IP*C)-3')
;
2396.589 1 ? ? ? ?
2 non-polymer syn 'DISTAMYCIN A' 481.508 1 ? ? ? ?
3 water nat water 18.015 43 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DI)(DC)(DA)(DT)(DA)(DT)(DI)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can ICATATIC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'DISTAMYCIN A' DMY
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DI n
1 2 DC n
1 3 DA n
1 4 DT n
1 5 DA n
1 6 DT n
1 7 DI n
1 8 DC n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DI 'DNA linking' y "2'-DEOXYINOSINE-5'-MONOPHOSPHATE" ? 'C10 H13 N4 O7 P' 332.207
DMY non-polymer . 'DISTAMYCIN A' 'DISTAMYCIN; STALLIMYCIN' 'C22 H27 N9 O4' 481.508
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DI 1 1 1 DI I A . n
A 1 2 DC 2 2 2 DC C A . n
A 1 3 DA 3 3 3 DA A A . n
A 1 4 DT 4 4 4 DT T A . n
A 1 5 DA 5 5 5 DA A A . n
A 1 6 DT 6 6 6 DT T A . n
A 1 7 DI 7 7 7 DI I A . n
A 1 8 DC 8 8 8 DC C A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMY 1 9 9 DMY DMY A .
C 3 HOH 1 10 10 HOH HOH A .
C 3 HOH 2 11 11 HOH HOH A .
C 3 HOH 3 12 12 HOH HOH A .
C 3 HOH 4 13 13 HOH HOH A .
C 3 HOH 5 14 14 HOH HOH A .
C 3 HOH 6 15 15 HOH HOH A .
C 3 HOH 7 16 16 HOH HOH A .
C 3 HOH 8 17 17 HOH HOH A .
C 3 HOH 9 18 18 HOH HOH A .
C 3 HOH 10 19 19 HOH HOH A .
C 3 HOH 11 20 20 HOH HOH A .
C 3 HOH 12 21 21 HOH HOH A .
C 3 HOH 13 22 22 HOH HOH A .
C 3 HOH 14 23 23 HOH HOH A .
C 3 HOH 15 24 24 HOH HOH A .
C 3 HOH 16 25 25 HOH HOH A .
C 3 HOH 17 26 26 HOH HOH A .
C 3 HOH 18 27 27 HOH HOH A .
C 3 HOH 19 28 28 HOH HOH A .
C 3 HOH 20 29 29 HOH HOH A .
C 3 HOH 21 30 30 HOH HOH A .
C 3 HOH 22 31 31 HOH HOH A .
C 3 HOH 23 32 32 HOH HOH A .
C 3 HOH 24 33 33 HOH HOH A .
C 3 HOH 25 34 34 HOH HOH A .
C 3 HOH 26 35 35 HOH HOH A .
C 3 HOH 27 36 36 HOH HOH A .
C 3 HOH 28 37 37 HOH HOH A .
C 3 HOH 29 38 38 HOH HOH A .
C 3 HOH 30 39 39 HOH HOH A .
C 3 HOH 31 40 40 HOH HOH A .
C 3 HOH 32 41 41 HOH HOH A .
C 3 HOH 33 42 42 HOH HOH A .
C 3 HOH 34 43 43 HOH HOH A .
C 3 HOH 35 44 44 HOH HOH A .
C 3 HOH 36 45 45 HOH HOH A .
C 3 HOH 37 46 46 HOH HOH A .
C 3 HOH 38 47 47 HOH HOH A .
C 3 HOH 39 48 48 HOH HOH A .
C 3 HOH 40 49 49 HOH HOH A .
C 3 HOH 41 50 50 HOH HOH A .
C 3 HOH 42 51 51 HOH HOH A .
C 3 HOH 43 52 52 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
XENGEN 'data collection' 2.0 ? 1
XENGEN 'data reduction' 2.0 ? 2
X-PLOR refinement . ? 3
XENGEN 'data scaling' 'V. 2.0' ? 4
#
_cell.entry_id 304D
_cell.length_a 33.380
_cell.length_b 25.330
_cell.length_c 28.110
_cell.angle_alpha 90.00
_cell.angle_beta 120.45
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 304D
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 5
#
_exptl.entry_id 304D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 40.15
_exptl_crystal.density_Matthews 2.06
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 'NA CACODYLATE' ? ? ?
1 4 1 MGCL2 ? ? ?
1 5 1 SPERMINE_HCL ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 298.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'AREA DETECTOR'
_diffrn_detector.type SIEMENS-NICOLET
_diffrn_detector.pdbx_collection_date 1994-11-03
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator GRAPHITE
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 304D
_reflns.observed_criterion_sigma_I 0.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high 1.600
_reflns.number_obs 1291
_reflns.number_all 1770
_reflns.percent_possible_obs 73.000
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value 0.014
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 1.400
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 304D
_refine.ls_number_reflns_obs 1108
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 1.900
_refine.ls_percent_reflns_obs 73.000
_refine.ls_R_factor_obs 0.184
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.184
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean 10.70
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model GDHB25
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 159
_refine_hist.pdbx_number_atoms_ligand 35
_refine_hist.number_atoms_solvent 43
_refine_hist.number_atoms_total 237
_refine_hist.d_res_high 1.900
_refine_hist.d_res_low .
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.018 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 3.80 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d 37.2 ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d 5.00 ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 304D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 304D
_struct.title 'SIDE-BY-SIDE BINDING OF DISTAMYCIN MOLECULES TO D(ICATATIC) IN THE MONOCLINIC FORM'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 304D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DOUBLE DRUG IN THE MINOR GROOVE, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 304D
_struct_ref.pdbx_db_accession 304D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 304D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 304D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 6 N3 ? ? A DA 3 A DT 6 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 6 O4 ? ? A DA 3 A DT 6 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 4 A DA 5 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 4 A DA 5 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 5 A DT 4 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 5 A DT 4 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 6 A DA 3 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 6 A DA 3 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A DMY 9 ? 12 'BINDING SITE FOR RESIDUE DMY A 9'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 12 DC A 2 ? DC A 2 . ? 1_555 ?
2 AC1 12 DA A 3 ? DA A 3 . ? 1_555 ?
3 AC1 12 DT A 4 ? DT A 4 . ? 2_555 ?
4 AC1 12 DA A 5 ? DA A 5 . ? 2_555 ?
5 AC1 12 DT A 6 ? DT A 6 . ? 2_555 ?
6 AC1 12 DI A 7 ? DI A 7 . ? 2_555 ?
7 AC1 12 DC A 8 ? DC A 8 . ? 3_556 ?
8 AC1 12 DC A 8 ? DC A 8 . ? 2_555 ?
9 AC1 12 HOH C . ? HOH A 11 . ? 1_555 ?
10 AC1 12 HOH C . ? HOH A 13 . ? 4_445 ?
11 AC1 12 HOH C . ? HOH A 15 . ? 1_555 ?
12 AC1 12 HOH C . ? HOH A 44 . ? 3_556 ?
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'"
_pdbx_validate_rmsd_bond.auth_asym_id_1 A
_pdbx_validate_rmsd_bond.auth_comp_id_1 DI
_pdbx_validate_rmsd_bond.auth_seq_id_1 7
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 P
_pdbx_validate_rmsd_bond.auth_asym_id_2 A
_pdbx_validate_rmsd_bond.auth_comp_id_2 DC
_pdbx_validate_rmsd_bond.auth_seq_id_2 8
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.695
_pdbx_validate_rmsd_bond.bond_target_value 1.607
_pdbx_validate_rmsd_bond.bond_deviation 0.088
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.012
_pdbx_validate_rmsd_bond.linker_flag Y
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C3'" A DI 1 ? ? "O3'" A DI 1 ? ? P A DC 2 ? ? 127.91 119.70 8.21 1.20 Y
2 1 "O3'" A DI 1 ? ? P A DC 2 ? ? "O5'" A DC 2 ? ? 82.08 104.00 -21.92 1.90 Y
3 1 "O3'" A DI 1 ? ? P A DC 2 ? ? OP1 A DC 2 ? ? 121.01 110.50 10.51 1.10 Y
4 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 109.90 106.00 3.90 0.60 N
5 1 "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 100.36 114.10 -13.74 1.80 N
6 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 114.00 108.30 5.70 0.30 N
7 1 "O3'" A DC 2 ? ? P A DA 3 ? ? "O5'" A DA 3 ? ? 88.62 104.00 -15.38 1.90 Y
8 1 "O3'" A DC 2 ? ? P A DA 3 ? ? OP2 A DA 3 ? ? 129.77 110.50 19.27 1.10 Y
9 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 100.93 105.90 -4.97 0.80 N
10 1 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 117.94 122.30 -4.36 0.60 N
11 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.71 122.90 -4.19 0.60 N
12 1 "C1'" A DT 6 ? ? "O4'" A DT 6 ? ? "C4'" A DT 6 ? ? 103.72 110.10 -6.38 1.00 N
13 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.13 108.30 1.83 0.30 N
14 1 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 117.84 122.90 -5.06 0.60 N
15 1 "O3'" A DI 7 ? ? P A DC 8 ? ? "O5'" A DC 8 ? ? 73.25 104.00 -30.75 1.90 Y
16 1 "O3'" A DI 7 ? ? P A DC 8 ? ? OP1 A DC 8 ? ? 69.98 105.20 -35.22 2.20 Y
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DI A 1 ? ? 0.064 'SIDE CHAIN'
2 1 DC A 2 ? ? 0.093 'SIDE CHAIN'
3 1 DA A 3 ? ? 0.085 'SIDE CHAIN'
4 1 DT A 4 ? ? 0.107 'SIDE CHAIN'
5 1 DA A 5 ? ? 0.061 'SIDE CHAIN'
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text 'MINOR GROOVE BINDER'
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DI OP3 O N N 71
DI P P N N 72
DI OP1 O N N 73
DI OP2 O N N 74
DI "O5'" O N N 75
DI "C5'" C N N 76
DI "C4'" C N R 77
DI "O4'" O N N 78
DI "C3'" C N S 79
DI "O3'" O N N 80
DI "C2'" C N N 81
DI "C1'" C N R 82
DI N9 N Y N 83
DI C8 C Y N 84
DI N7 N Y N 85
DI C5 C Y N 86
DI C6 C N N 87
DI O6 O N N 88
DI N1 N N N 89
DI C2 C N N 90
DI N3 N N N 91
DI C4 C Y N 92
DI HOP3 H N N 93
DI HOP2 H N N 94
DI "H5'" H N N 95
DI "H5''" H N N 96
DI "H4'" H N N 97
DI "H3'" H N N 98
DI "HO3'" H N N 99
DI "H2'" H N N 100
DI "H2''" H N N 101
DI "H1'" H N N 102
DI H8 H N N 103
DI H1 H N N 104
DI H2 H N N 105
DMY C1 C N N 106
DMY O1 O N N 107
DMY N1 N N N 108
DMY C2 C Y N 109
DMY C3 C Y N 110
DMY C4 C Y N 111
DMY N2 N Y N 112
DMY C5 C Y N 113
DMY C6 C N N 114
DMY C7 C N N 115
DMY O2 O N N 116
DMY N3 N N N 117
DMY C8 C Y N 118
DMY C9 C Y N 119
DMY C10 C Y N 120
DMY N4 N Y N 121
DMY C11 C Y N 122
DMY C12 C N N 123
DMY C13 C N N 124
DMY O3 O N N 125
DMY N5 N N N 126
DMY C14 C Y N 127
DMY C15 C Y N 128
DMY C16 C Y N 129
DMY N6 N Y N 130
DMY C17 C Y N 131
DMY C18 C N N 132
DMY C19 C N N 133
DMY O4 O N N 134
DMY N7 N N N 135
DMY C20 C N N 136
DMY C21 C N N 137
DMY C22 C N N 138
DMY N8 N N N 139
DMY N9 N N N 140
DMY H1 H N N 141
DMY HN1 H N N 142
DMY H3 H N N 143
DMY H5 H N N 144
DMY H61 H N N 145
DMY H62 H N N 146
DMY H63 H N N 147
DMY HN3 H N N 148
DMY H9 H N N 149
DMY H11 H N N 150
DMY H121 H N N 151
DMY H122 H N N 152
DMY H123 H N N 153
DMY HN5 H N N 154
DMY H15 H N N 155
DMY H17 H N N 156
DMY H181 H N N 157
DMY H182 H N N 158
DMY H183 H N N 159
DMY HN7 H N N 160
DMY H201 H N N 161
DMY H202 H N N 162
DMY H211 H N N 163
DMY H212 H N N 164
DMY HN8 H N N 165
DMY HN91 H N N 166
DMY HN92 H N N 167
DT OP3 O N N 168
DT P P N N 169
DT OP1 O N N 170
DT OP2 O N N 171
DT "O5'" O N N 172
DT "C5'" C N N 173
DT "C4'" C N R 174
DT "O4'" O N N 175
DT "C3'" C N S 176
DT "O3'" O N N 177
DT "C2'" C N N 178
DT "C1'" C N R 179
DT N1 N N N 180
DT C2 C N N 181
DT O2 O N N 182
DT N3 N N N 183
DT C4 C N N 184
DT O4 O N N 185
DT C5 C N N 186
DT C7 C N N 187
DT C6 C N N 188
DT HOP3 H N N 189
DT HOP2 H N N 190
DT "H5'" H N N 191
DT "H5''" H N N 192
DT "H4'" H N N 193
DT "H3'" H N N 194
DT "HO3'" H N N 195
DT "H2'" H N N 196
DT "H2''" H N N 197
DT "H1'" H N N 198
DT H3 H N N 199
DT H71 H N N 200
DT H72 H N N 201
DT H73 H N N 202
DT H6 H N N 203
HOH O O N N 204
HOH H1 H N N 205
HOH H2 H N N 206
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DI OP3 P sing N N 74
DI OP3 HOP3 sing N N 75
DI P OP1 doub N N 76
DI P OP2 sing N N 77
DI P "O5'" sing N N 78
DI OP2 HOP2 sing N N 79
DI "O5'" "C5'" sing N N 80
DI "C5'" "C4'" sing N N 81
DI "C5'" "H5'" sing N N 82
DI "C5'" "H5''" sing N N 83
DI "C4'" "O4'" sing N N 84
DI "C4'" "C3'" sing N N 85
DI "C4'" "H4'" sing N N 86
DI "O4'" "C1'" sing N N 87
DI "C3'" "O3'" sing N N 88
DI "C3'" "C2'" sing N N 89
DI "C3'" "H3'" sing N N 90
DI "O3'" "HO3'" sing N N 91
DI "C2'" "C1'" sing N N 92
DI "C2'" "H2'" sing N N 93
DI "C2'" "H2''" sing N N 94
DI "C1'" N9 sing N N 95
DI "C1'" "H1'" sing N N 96
DI N9 C8 sing Y N 97
DI N9 C4 sing Y N 98
DI C8 N7 doub Y N 99
DI C8 H8 sing N N 100
DI N7 C5 sing Y N 101
DI C5 C6 sing N N 102
DI C5 C4 doub Y N 103
DI C6 O6 doub N N 104
DI C6 N1 sing N N 105
DI N1 C2 sing N N 106
DI N1 H1 sing N N 107
DI C2 N3 doub N N 108
DI C2 H2 sing N N 109
DI N3 C4 sing N N 110
DMY C1 O1 doub N N 111
DMY C1 N1 sing N N 112
DMY C1 H1 sing N N 113
DMY N1 C2 sing N N 114
DMY N1 HN1 sing N N 115
DMY C2 C3 sing Y N 116
DMY C2 C5 doub Y N 117
DMY C3 C4 doub Y N 118
DMY C3 H3 sing N N 119
DMY C4 N2 sing Y N 120
DMY C4 C7 sing N N 121
DMY N2 C5 sing Y N 122
DMY N2 C6 sing N N 123
DMY C5 H5 sing N N 124
DMY C6 H61 sing N N 125
DMY C6 H62 sing N N 126
DMY C6 H63 sing N N 127
DMY C7 O2 doub N N 128
DMY C7 N3 sing N N 129
DMY N3 C8 sing N N 130
DMY N3 HN3 sing N N 131
DMY C8 C9 sing Y N 132
DMY C8 C11 doub Y N 133
DMY C9 C10 doub Y N 134
DMY C9 H9 sing N N 135
DMY C10 N4 sing Y N 136
DMY C10 C13 sing N N 137
DMY N4 C11 sing Y N 138
DMY N4 C12 sing N N 139
DMY C11 H11 sing N N 140
DMY C12 H121 sing N N 141
DMY C12 H122 sing N N 142
DMY C12 H123 sing N N 143
DMY C13 O3 doub N N 144
DMY C13 N5 sing N N 145
DMY N5 C14 sing N N 146
DMY N5 HN5 sing N N 147
DMY C14 C15 sing Y N 148
DMY C14 C17 doub Y N 149
DMY C15 C16 doub Y N 150
DMY C15 H15 sing N N 151
DMY C16 N6 sing Y N 152
DMY C16 C19 sing N N 153
DMY N6 C17 sing Y N 154
DMY N6 C18 sing N N 155
DMY C17 H17 sing N N 156
DMY C18 H181 sing N N 157
DMY C18 H182 sing N N 158
DMY C18 H183 sing N N 159
DMY C19 O4 doub N N 160
DMY C19 N7 sing N N 161
DMY N7 C20 sing N N 162
DMY N7 HN7 sing N N 163
DMY C20 C21 sing N N 164
DMY C20 H201 sing N N 165
DMY C20 H202 sing N N 166
DMY C21 C22 sing N N 167
DMY C21 H211 sing N N 168
DMY C21 H212 sing N N 169
DMY C22 N8 doub N N 170
DMY C22 N9 sing N N 171
DMY N8 HN8 sing N N 172
DMY N9 HN91 sing N N 173
DMY N9 HN92 sing N N 174
DT OP3 P sing N N 175
DT OP3 HOP3 sing N N 176
DT P OP1 doub N N 177
DT P OP2 sing N N 178
DT P "O5'" sing N N 179
DT OP2 HOP2 sing N N 180
DT "O5'" "C5'" sing N N 181
DT "C5'" "C4'" sing N N 182
DT "C5'" "H5'" sing N N 183
DT "C5'" "H5''" sing N N 184
DT "C4'" "O4'" sing N N 185
DT "C4'" "C3'" sing N N 186
DT "C4'" "H4'" sing N N 187
DT "O4'" "C1'" sing N N 188
DT "C3'" "O3'" sing N N 189
DT "C3'" "C2'" sing N N 190
DT "C3'" "H3'" sing N N 191
DT "O3'" "HO3'" sing N N 192
DT "C2'" "C1'" sing N N 193
DT "C2'" "H2'" sing N N 194
DT "C2'" "H2''" sing N N 195
DT "C1'" N1 sing N N 196
DT "C1'" "H1'" sing N N 197
DT N1 C2 sing N N 198
DT N1 C6 sing N N 199
DT C2 O2 doub N N 200
DT C2 N3 sing N N 201
DT N3 C4 sing N N 202
DT N3 H3 sing N N 203
DT C4 O4 doub N N 204
DT C4 C5 sing N N 205
DT C5 C7 sing N N 206
DT C5 C6 doub N N 207
DT C7 H71 sing N N 208
DT C7 H72 sing N N 209
DT C7 H73 sing N N 210
DT C6 H6 sing N N 211
HOH O H1 sing N N 212
HOH O H2 sing N N 213
#
_ndb_struct_conf_na.entry_id 304D
_ndb_struct_conf_na.feature 'double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DA 3 1_555 A DT 6 2_555 0.439 -0.013 0.000 2.809 -4.182 0.608 1 A_DA3:DT6_A A 3 ? A 6 ? 20 1
1 A DT 4 1_555 A DA 5 2_555 0.314 -0.030 -0.415 5.094 -5.337 -1.470 2 A_DT4:DA5_A A 4 ? A 5 ? 20 1
1 A DA 5 1_555 A DT 4 2_555 -0.314 -0.030 -0.415 -5.094 -5.337 -1.470 3 A_DA5:DT4_A A 5 ? A 4 ? 20 1
1 A DT 6 1_555 A DA 3 2_555 -0.439 -0.013 0.000 -2.809 -4.182 0.608 4 A_DT6:DA3_A A 6 ? A 3 ? 20 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DA 3 1_555 A DT 6 2_555 A DT 4 1_555 A DA 5 2_555 -0.068 0.251 3.329 5.609 4.131 24.934 -0.612 1.743 3.235 9.338 -12.679
25.874 1 AA_DA3DT4:DA5DT6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A DT 4 1_555 A DA 5 2_555 A DA 5 1_555 A DT 4 2_555 0.000 3.348 3.572 0.000 -3.672 45.437 4.661 0.000 3.306 -4.745 0.000
45.577 2 AA_DT4DA5:DT4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DA 5 1_555 A DT 4 2_555 A DT 6 1_555 A DA 3 2_555 0.068 0.251 3.329 -5.609 4.131 24.934 -0.612 -1.743 3.235 9.338 12.679
25.874 3 AA_DA5DT6:DA3DT4_AA A 5 ? A 4 ? A 6 ? A 3 ?
#
_pdbx_initial_refinement_model.accession_code 159D
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.details GDHB25
#
_atom_sites.entry_id 304D
_atom_sites.fract_transf_matrix[1][1] 0.029958
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.017611
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.039479
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.041266
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DI A 1 1 ? -10.440 9.856 10.553 1.00 10.10 ? 1 DI A "O5'" 1
ATOM 2 C "C5'" . DI A 1 1 ? -10.065 8.479 10.485 1.00 8.71 ? 1 DI A "C5'" 1
ATOM 3 C "C4'" . DI A 1 1 ? -8.568 8.311 10.801 1.00 8.53 ? 1 DI A "C4'" 1
ATOM 4 O "O4'" . DI A 1 1 ? -8.286 6.940 11.033 1.00 7.73 ? 1 DI A "O4'" 1
ATOM 5 C "C3'" . DI A 1 1 ? -7.663 8.755 9.640 1.00 9.23 ? 1 DI A "C3'" 1
ATOM 6 O "O3'" . DI A 1 1 ? -6.532 9.256 10.342 1.00 9.67 ? 1 DI A "O3'" 1
ATOM 7 C "C2'" . DI A 1 1 ? -7.455 7.423 8.888 1.00 8.19 ? 1 DI A "C2'" 1
ATOM 8 C "C1'" . DI A 1 1 ? -7.347 6.439 10.044 1.00 7.99 ? 1 DI A "C1'" 1
ATOM 9 N N9 . DI A 1 1 ? -7.746 5.070 9.695 1.00 7.80 ? 1 DI A N9 1
ATOM 10 C C8 . DI A 1 1 ? -9.027 4.685 9.363 1.00 8.46 ? 1 DI A C8 1
ATOM 11 N N7 . DI A 1 1 ? -9.188 3.390 9.332 1.00 8.76 ? 1 DI A N7 1
ATOM 12 C C5 . DI A 1 1 ? -8.019 2.908 9.927 1.00 8.10 ? 1 DI A C5 1
ATOM 13 C C6 . DI A 1 1 ? -7.581 1.578 10.082 1.00 7.86 ? 1 DI A C6 1
ATOM 14 O O6 . DI A 1 1 ? -8.216 0.558 9.808 1.00 9.66 ? 1 DI A O6 1
ATOM 15 N N1 . DI A 1 1 ? -6.297 1.498 10.517 1.00 6.25 ? 1 DI A N1 1
ATOM 16 C C2 . DI A 1 1 ? -5.476 2.556 10.763 1.00 5.74 ? 1 DI A C2 1
ATOM 17 N N3 . DI A 1 1 ? -5.886 3.800 10.657 1.00 6.56 ? 1 DI A N3 1
ATOM 18 C C4 . DI A 1 1 ? -7.136 3.918 10.158 1.00 7.23 ? 1 DI A C4 1
ATOM 19 P P . DC A 1 2 ? -5.209 9.909 9.732 1.00 11.56 ? 2 DC A P 1
ATOM 20 O OP1 . DC A 1 2 ? -4.319 10.754 10.566 1.00 13.73 ? 2 DC A OP1 1
ATOM 21 O OP2 . DC A 1 2 ? -5.664 10.286 8.361 1.00 12.68 ? 2 DC A OP2 1
ATOM 22 O "O5'" . DC A 1 2 ? -4.716 8.421 9.774 1.00 10.62 ? 2 DC A "O5'" 1
ATOM 23 C "C5'" . DC A 1 2 ? -3.806 8.101 8.781 1.00 9.17 ? 2 DC A "C5'" 1
ATOM 24 C "C4'" . DC A 1 2 ? -2.940 6.938 9.222 1.00 8.60 ? 2 DC A "C4'" 1
ATOM 25 O "O4'" . DC A 1 2 ? -3.752 5.725 9.207 1.00 7.96 ? 2 DC A "O4'" 1
ATOM 26 C "C3'" . DC A 1 2 ? -1.951 6.901 8.105 1.00 7.53 ? 2 DC A "C3'" 1
ATOM 27 O "O3'" . DC A 1 2 ? -0.646 6.416 8.411 1.00 8.57 ? 2 DC A "O3'" 1
ATOM 28 C "C2'" . DC A 1 2 ? -2.705 5.997 7.188 1.00 7.82 ? 2 DC A "C2'" 1
ATOM 29 C "C1'" . DC A 1 2 ? -3.319 4.971 8.079 1.00 6.41 ? 2 DC A "C1'" 1
ATOM 30 N N1 . DC A 1 2 ? -4.399 4.264 7.384 1.00 3.62 ? 2 DC A N1 1
ATOM 31 C C2 . DC A 1 2 ? -4.446 2.901 7.534 1.00 2.78 ? 2 DC A C2 1
ATOM 32 O O2 . DC A 1 2 ? -3.489 2.261 7.952 1.00 2.33 ? 2 DC A O2 1
ATOM 33 N N3 . DC A 1 2 ? -5.569 2.250 7.168 1.00 2.90 ? 2 DC A N3 1
ATOM 34 C C4 . DC A 1 2 ? -6.604 2.919 6.626 1.00 3.44 ? 2 DC A C4 1
ATOM 35 N N4 . DC A 1 2 ? -7.696 2.247 6.218 1.00 2.31 ? 2 DC A N4 1
ATOM 36 C C5 . DC A 1 2 ? -6.562 4.346 6.469 1.00 3.83 ? 2 DC A C5 1
ATOM 37 C C6 . DC A 1 2 ? -5.400 4.952 6.771 1.00 3.65 ? 2 DC A C6 1
ATOM 38 P P . DA A 1 3 ? 0.515 7.433 7.969 1.00 8.06 ? 3 DA A P 1
ATOM 39 O OP1 . DA A 1 3 ? 0.567 8.051 9.298 1.00 10.02 ? 3 DA A OP1 1
ATOM 40 O OP2 . DA A 1 3 ? 0.639 8.240 6.758 1.00 8.31 ? 3 DA A OP2 1
ATOM 41 O "O5'" . DA A 1 3 ? 1.549 6.168 7.917 1.00 7.72 ? 3 DA A "O5'" 1
ATOM 42 C "C5'" . DA A 1 3 ? 1.997 5.354 9.002 1.00 8.91 ? 3 DA A "C5'" 1
ATOM 43 C "C4'" . DA A 1 3 ? 2.537 4.024 8.529 1.00 9.03 ? 3 DA A "C4'" 1
ATOM 44 O "O4'" . DA A 1 3 ? 1.514 3.238 7.914 1.00 8.59 ? 3 DA A "O4'" 1
ATOM 45 C "C3'" . DA A 1 3 ? 3.586 4.257 7.446 1.00 9.96 ? 3 DA A "C3'" 1
ATOM 46 O "O3'" . DA A 1 3 ? 4.768 3.561 7.904 1.00 10.60 ? 3 DA A "O3'" 1
ATOM 47 C "C2'" . DA A 1 3 ? 2.959 3.861 6.102 1.00 9.01 ? 3 DA A "C2'" 1
ATOM 48 C "C1'" . DA A 1 3 ? 1.844 2.899 6.550 1.00 9.21 ? 3 DA A "C1'" 1
ATOM 49 N N9 . DA A 1 3 ? 0.641 3.118 5.788 1.00 7.98 ? 3 DA A N9 1
ATOM 50 C C8 . DA A 1 3 ? -0.011 4.303 5.566 1.00 7.50 ? 3 DA A C8 1
ATOM 51 N N7 . DA A 1 3 ? -1.211 4.177 5.142 1.00 7.31 ? 3 DA A N7 1
ATOM 52 C C5 . DA A 1 3 ? -1.388 2.789 5.127 1.00 6.77 ? 3 DA A C5 1
ATOM 53 C C6 . DA A 1 3 ? -2.450 1.993 4.747 1.00 6.54 ? 3 DA A C6 1
ATOM 54 N N6 . DA A 1 3 ? -3.555 2.544 4.292 1.00 5.00 ? 3 DA A N6 1
ATOM 55 N N1 . DA A 1 3 ? -2.341 0.648 4.888 1.00 6.19 ? 3 DA A N1 1
ATOM 56 C C2 . DA A 1 3 ? -1.172 0.161 5.268 1.00 6.64 ? 3 DA A C2 1
ATOM 57 N N3 . DA A 1 3 ? -0.042 0.802 5.507 1.00 7.53 ? 3 DA A N3 1
ATOM 58 C C4 . DA A 1 3 ? -0.261 2.140 5.514 1.00 7.71 ? 3 DA A C4 1
ATOM 59 P P . DT A 1 4 ? 5.998 3.243 6.999 1.00 11.89 ? 4 DT A P 1
ATOM 60 O OP1 . DT A 1 4 ? 7.070 2.671 7.855 1.00 10.12 ? 4 DT A OP1 1
ATOM 61 O OP2 . DT A 1 4 ? 6.043 4.640 6.453 1.00 11.02 ? 4 DT A OP2 1
ATOM 62 O "O5'" . DT A 1 4 ? 5.606 2.244 5.828 1.00 11.55 ? 4 DT A "O5'" 1
ATOM 63 C "C5'" . DT A 1 4 ? 5.370 0.851 6.036 1.00 11.24 ? 4 DT A "C5'" 1
ATOM 64 C "C4'" . DT A 1 4 ? 4.969 0.229 4.711 1.00 10.69 ? 4 DT A "C4'" 1
ATOM 65 O "O4'" . DT A 1 4 ? 3.650 0.657 4.297 1.00 11.43 ? 4 DT A "O4'" 1
ATOM 66 C "C3'" . DT A 1 4 ? 5.927 0.598 3.583 1.00 10.37 ? 4 DT A "C3'" 1
ATOM 67 O "O3'" . DT A 1 4 ? 6.395 -0.579 2.937 1.00 9.38 ? 4 DT A "O3'" 1
ATOM 68 C "C2'" . DT A 1 4 ? 5.010 1.377 2.642 1.00 10.23 ? 4 DT A "C2'" 1
ATOM 69 C "C1'" . DT A 1 4 ? 3.684 0.732 2.860 1.00 10.71 ? 4 DT A "C1'" 1
ATOM 70 N N1 . DT A 1 4 ? 2.524 1.505 2.392 1.00 10.47 ? 4 DT A N1 1
ATOM 71 C C2 . DT A 1 4 ? 1.344 0.818 2.147 1.00 10.54 ? 4 DT A C2 1
ATOM 72 O O2 . DT A 1 4 ? 1.243 -0.391 1.962 1.00 11.35 ? 4 DT A O2 1
ATOM 73 N N3 . DT A 1 4 ? 0.214 1.582 2.027 1.00 10.38 ? 4 DT A N3 1
ATOM 74 C C4 . DT A 1 4 ? 0.142 2.960 1.947 1.00 10.14 ? 4 DT A C4 1
ATOM 75 O O4 . DT A 1 4 ? -0.953 3.499 1.785 1.00 9.97 ? 4 DT A O4 1
ATOM 76 C C5 . DT A 1 4 ? 1.424 3.599 2.107 1.00 10.95 ? 4 DT A C5 1
ATOM 77 C C7 . DT A 1 4 ? 1.543 5.113 2.009 1.00 11.51 ? 4 DT A C7 1
ATOM 78 C C6 . DT A 1 4 ? 2.545 2.871 2.330 1.00 10.63 ? 4 DT A C6 1
ATOM 79 P P . DA A 1 5 ? 7.955 -0.866 2.686 1.00 10.09 ? 5 DA A P 1
ATOM 80 O OP1 . DA A 1 5 ? 8.472 -0.825 4.061 1.00 9.34 ? 5 DA A OP1 1
ATOM 81 O OP2 . DA A 1 5 ? 8.636 -0.011 1.666 1.00 9.60 ? 5 DA A OP2 1
ATOM 82 O "O5'" . DA A 1 5 ? 8.004 -2.378 2.195 1.00 10.06 ? 5 DA A "O5'" 1
ATOM 83 C "C5'" . DA A 1 5 ? 7.426 -3.361 3.039 1.00 9.90 ? 5 DA A "C5'" 1
ATOM 84 C "C4'" . DA A 1 5 ? 6.585 -4.308 2.227 1.00 10.23 ? 5 DA A "C4'" 1
ATOM 85 O "O4'" . DA A 1 5 ? 5.514 -3.625 1.577 1.00 10.62 ? 5 DA A "O4'" 1
ATOM 86 C "C3'" . DA A 1 5 ? 7.350 -5.018 1.144 1.00 10.43 ? 5 DA A "C3'" 1
ATOM 87 O "O3'" . DA A 1 5 ? 6.840 -6.366 1.133 1.00 11.09 ? 5 DA A "O3'" 1
ATOM 88 C "C2'" . DA A 1 5 ? 7.026 -4.182 -0.096 1.00 9.64 ? 5 DA A "C2'" 1
ATOM 89 C "C1'" . DA A 1 5 ? 5.642 -3.628 0.143 1.00 8.45 ? 5 DA A "C1'" 1
ATOM 90 N N9 . DA A 1 5 ? 5.431 -2.243 -0.289 1.00 6.95 ? 5 DA A N9 1
ATOM 91 C C8 . DA A 1 5 ? 6.256 -1.162 -0.149 1.00 5.70 ? 5 DA A C8 1
ATOM 92 N N7 . DA A 1 5 ? 5.699 -0.025 -0.414 1.00 5.27 ? 5 DA A N7 1
ATOM 93 C C5 . DA A 1 5 ? 4.381 -0.353 -0.699 1.00 5.49 ? 5 DA A C5 1
ATOM 94 C C6 . DA A 1 5 ? 3.268 0.437 -0.979 1.00 5.87 ? 5 DA A C6 1
ATOM 95 N N6 . DA A 1 5 ? 3.346 1.754 -1.037 1.00 6.33 ? 5 DA A N6 1
ATOM 96 N N1 . DA A 1 5 ? 2.082 -0.185 -1.104 1.00 6.82 ? 5 DA A N1 1
ATOM 97 C C2 . DA A 1 5 ? 2.049 -1.519 -1.012 1.00 6.71 ? 5 DA A C2 1
ATOM 98 N N3 . DA A 1 5 ? 3.047 -2.363 -0.767 1.00 6.01 ? 5 DA A N3 1
ATOM 99 C C4 . DA A 1 5 ? 4.177 -1.688 -0.525 1.00 6.20 ? 5 DA A C4 1
ATOM 100 P P . DT A 1 6 ? 7.356 -7.409 0.005 1.00 12.69 ? 6 DT A P 1
ATOM 101 O OP1 . DT A 1 6 ? 7.148 -8.698 0.734 1.00 12.66 ? 6 DT A OP1 1
ATOM 102 O OP2 . DT A 1 6 ? 8.698 -6.930 -0.354 1.00 9.43 ? 6 DT A OP2 1
ATOM 103 O "O5'" . DT A 1 6 ? 6.430 -7.281 -1.265 1.00 10.15 ? 6 DT A "O5'" 1
ATOM 104 C "C5'" . DT A 1 6 ? 5.095 -7.676 -1.250 1.00 10.44 ? 6 DT A "C5'" 1
ATOM 105 C "C4'" . DT A 1 6 ? 4.415 -7.021 -2.405 1.00 8.98 ? 6 DT A "C4'" 1
ATOM 106 O "O4'" . DT A 1 6 ? 4.485 -5.597 -2.313 1.00 8.37 ? 6 DT A "O4'" 1
ATOM 107 C "C3'" . DT A 1 6 ? 5.094 -7.440 -3.700 1.00 9.04 ? 6 DT A "C3'" 1
ATOM 108 O "O3'" . DT A 1 6 ? 4.181 -8.411 -4.216 1.00 9.58 ? 6 DT A "O3'" 1
ATOM 109 C "C2'" . DT A 1 6 ? 5.196 -6.133 -4.464 1.00 7.64 ? 6 DT A "C2'" 1
ATOM 110 C "C1'" . DT A 1 6 ? 4.357 -5.168 -3.653 1.00 7.45 ? 6 DT A "C1'" 1
ATOM 111 N N1 . DT A 1 6 ? 4.751 -3.769 -3.772 1.00 6.43 ? 6 DT A N1 1
ATOM 112 C C2 . DT A 1 6 ? 3.781 -2.873 -4.170 1.00 5.47 ? 6 DT A C2 1
ATOM 113 O O2 . DT A 1 6 ? 2.691 -3.208 -4.576 1.00 4.21 ? 6 DT A O2 1
ATOM 114 N N3 . DT A 1 6 ? 4.110 -1.529 -4.126 1.00 4.91 ? 6 DT A N3 1
ATOM 115 C C4 . DT A 1 6 ? 5.375 -1.023 -3.805 1.00 4.70 ? 6 DT A C4 1
ATOM 116 O O4 . DT A 1 6 ? 5.578 0.195 -3.840 1.00 4.02 ? 6 DT A O4 1
ATOM 117 C C5 . DT A 1 6 ? 6.337 -2.053 -3.455 1.00 5.11 ? 6 DT A C5 1
ATOM 118 C C7 . DT A 1 6 ? 7.758 -1.696 -3.100 1.00 2.99 ? 6 DT A C7 1
ATOM 119 C C6 . DT A 1 6 ? 5.991 -3.361 -3.438 1.00 5.34 ? 6 DT A C6 1
ATOM 120 P P . DI A 1 7 ? 4.440 -9.073 -5.606 1.00 11.13 ? 7 DI A P 1
ATOM 121 O OP1 . DI A 1 7 ? 3.775 -10.368 -5.351 1.00 10.57 ? 7 DI A OP1 1
ATOM 122 O OP2 . DI A 1 7 ? 5.868 -9.000 -5.970 1.00 12.00 ? 7 DI A OP2 1
ATOM 123 O "O5'" . DI A 1 7 ? 3.683 -8.331 -6.786 1.00 9.51 ? 7 DI A "O5'" 1
ATOM 124 C "C5'" . DI A 1 7 ? 2.241 -8.141 -6.780 1.00 9.01 ? 7 DI A "C5'" 1
ATOM 125 C "C4'" . DI A 1 7 ? 1.863 -6.886 -7.570 1.00 7.81 ? 7 DI A "C4'" 1
ATOM 126 O "O4'" . DI A 1 7 ? 2.687 -5.815 -7.057 1.00 7.34 ? 7 DI A "O4'" 1
ATOM 127 C "C3'" . DI A 1 7 ? 2.291 -7.036 -8.977 1.00 7.93 ? 7 DI A "C3'" 1
ATOM 128 O "O3'" . DI A 1 7 ? 1.181 -7.173 -9.890 1.00 8.81 ? 7 DI A "O3'" 1
ATOM 129 C "C2'" . DI A 1 7 ? 3.175 -5.804 -9.214 1.00 7.39 ? 7 DI A "C2'" 1
ATOM 130 C "C1'" . DI A 1 7 ? 3.022 -4.854 -8.048 1.00 5.99 ? 7 DI A "C1'" 1
ATOM 131 N N9 . DI A 1 7 ? 4.283 -4.109 -7.674 1.00 3.60 ? 7 DI A N9 1
ATOM 132 C C8 . DI A 1 7 ? 5.565 -4.599 -7.483 1.00 3.24 ? 7 DI A C8 1
ATOM 133 N N7 . DI A 1 7 ? 6.438 -3.679 -7.172 1.00 2.61 ? 7 DI A N7 1
ATOM 134 C C5 . DI A 1 7 ? 5.727 -2.486 -7.195 1.00 2.72 ? 7 DI A C5 1
ATOM 135 C C6 . DI A 1 7 ? 6.168 -1.145 -7.024 1.00 2.43 ? 7 DI A C6 1
ATOM 136 O O6 . DI A 1 7 ? 7.281 -0.749 -6.660 1.00 4.03 ? 7 DI A O6 1
ATOM 137 N N1 . DI A 1 7 ? 5.168 -0.240 -7.271 1.00 2.03 ? 7 DI A N1 1
ATOM 138 C C2 . DI A 1 7 ? 3.929 -0.556 -7.734 1.00 2.00 ? 7 DI A C2 1
ATOM 139 N N3 . DI A 1 7 ? 3.489 -1.797 -7.815 1.00 2.36 ? 7 DI A N3 1
ATOM 140 C C4 . DI A 1 7 ? 4.422 -2.728 -7.554 1.00 2.60 ? 7 DI A C4 1
ATOM 141 P P . DC A 1 8 ? 1.353 -7.338 -11.568 1.00 9.22 ? 8 DC A P 1
ATOM 142 O OP1 . DC A 1 8 ? 0.433 -8.366 -11.052 1.00 10.61 ? 8 DC A OP1 1
ATOM 143 O OP2 . DC A 1 8 ? 2.819 -7.493 -11.599 1.00 10.13 ? 8 DC A OP2 1
ATOM 144 O "O5'" . DC A 1 8 ? 0.823 -5.843 -11.301 1.00 9.41 ? 8 DC A "O5'" 1
ATOM 145 C "C5'" . DC A 1 8 ? 0.506 -5.141 -12.485 1.00 9.16 ? 8 DC A "C5'" 1
ATOM 146 C "C4'" . DC A 1 8 ? 0.541 -3.656 -12.375 1.00 7.90 ? 8 DC A "C4'" 1
ATOM 147 O "O4'" . DC A 1 8 ? 1.682 -3.273 -11.579 1.00 7.05 ? 8 DC A "O4'" 1
ATOM 148 C "C3'" . DC A 1 8 ? 0.703 -3.066 -13.790 1.00 6.96 ? 8 DC A "C3'" 1
ATOM 149 O "O3'" . DC A 1 8 ? -0.171 -1.907 -13.814 1.00 6.77 ? 8 DC A "O3'" 1
ATOM 150 C "C2'" . DC A 1 8 ? 2.244 -2.780 -13.764 1.00 7.01 ? 8 DC A "C2'" 1
ATOM 151 C "C1'" . DC A 1 8 ? 2.450 -2.363 -12.313 1.00 6.05 ? 8 DC A "C1'" 1
ATOM 152 N N1 . DC A 1 8 ? 3.788 -2.381 -11.743 1.00 5.08 ? 8 DC A N1 1
ATOM 153 C C2 . DC A 1 8 ? 4.332 -1.159 -11.357 1.00 5.34 ? 8 DC A C2 1
ATOM 154 O O2 . DC A 1 8 ? 3.702 -0.096 -11.473 1.00 5.98 ? 8 DC A O2 1
ATOM 155 N N3 . DC A 1 8 ? 5.570 -1.166 -10.781 1.00 4.76 ? 8 DC A N3 1
ATOM 156 C C4 . DC A 1 8 ? 6.253 -2.317 -10.626 1.00 4.35 ? 8 DC A C4 1
ATOM 157 N N4 . DC A 1 8 ? 7.509 -2.272 -10.195 1.00 5.50 ? 8 DC A N4 1
ATOM 158 C C5 . DC A 1 8 ? 5.684 -3.579 -10.972 1.00 4.82 ? 8 DC A C5 1
ATOM 159 C C6 . DC A 1 8 ? 4.476 -3.563 -11.588 1.00 5.17 ? 8 DC A C6 1
HETATM 160 C C1 . DMY B 2 . ? -2.781 -2.017 -5.559 1.00 5.25 ? 9 DMY A C1 1
HETATM 161 O O1 . DMY B 2 . ? -3.588 -2.653 -6.232 1.00 3.99 ? 9 DMY A O1 1
HETATM 162 N N1 . DMY B 2 . ? -2.322 -2.312 -4.337 1.00 5.16 ? 9 DMY A N1 1
HETATM 163 C C2 . DMY B 2 . ? -2.668 -3.433 -3.696 1.00 5.74 ? 9 DMY A C2 1
HETATM 164 C C3 . DMY B 2 . ? -2.301 -3.765 -2.404 1.00 5.56 ? 9 DMY A C3 1
HETATM 165 C C4 . DMY B 2 . ? -2.650 -5.063 -2.161 1.00 5.22 ? 9 DMY A C4 1
HETATM 166 N N2 . DMY B 2 . ? -3.229 -5.586 -3.272 1.00 6.58 ? 9 DMY A N2 1
HETATM 167 C C5 . DMY B 2 . ? -3.235 -4.644 -4.222 1.00 6.28 ? 9 DMY A C5 1
HETATM 168 C C6 . DMY B 2 . ? -4.062 -6.870 -3.403 1.00 7.25 ? 9 DMY A C6 1
HETATM 169 C C7 . DMY B 2 . ? -2.311 -5.839 -1.033 1.00 5.26 ? 9 DMY A C7 1
HETATM 170 O O2 . DMY B 2 . ? -2.307 -7.069 -1.138 1.00 5.55 ? 9 DMY A O2 1
HETATM 171 N N3 . DMY B 2 . ? -2.029 -5.119 0.088 1.00 3.95 ? 9 DMY A N3 1
HETATM 172 C C8 . DMY B 2 . ? -1.451 -5.716 1.160 1.00 4.72 ? 9 DMY A C8 1
HETATM 173 C C9 . DMY B 2 . ? -1.127 -5.120 2.362 1.00 4.42 ? 9 DMY A C9 1
HETATM 174 C C10 . DMY B 2 . ? -0.575 -6.082 3.199 1.00 5.70 ? 9 DMY A C10 1
HETATM 175 N N4 . DMY B 2 . ? -0.511 -7.252 2.546 1.00 5.38 ? 9 DMY A N4 1
HETATM 176 C C11 . DMY B 2 . ? -1.016 -7.073 1.330 1.00 4.71 ? 9 DMY A C11 1
HETATM 177 C C12 . DMY B 2 . ? -0.160 -8.637 3.046 1.00 5.60 ? 9 DMY A C12 1
HETATM 178 C C13 . DMY B 2 . ? -0.046 -5.909 4.504 1.00 6.46 ? 9 DMY A C13 1
HETATM 179 O O3 . DMY B 2 . ? 0.713 -6.751 5.018 1.00 8.29 ? 9 DMY A O3 1
HETATM 180 N N5 . DMY B 2 . ? -0.450 -4.740 5.059 1.00 5.86 ? 9 DMY A N5 1
HETATM 181 C C14 . DMY B 2 . ? 0.057 -4.265 6.215 1.00 6.36 ? 9 DMY A C14 1
HETATM 182 C C15 . DMY B 2 . ? -0.295 -3.085 6.847 1.00 6.53 ? 9 DMY A C15 1
HETATM 183 C C16 . DMY B 2 . ? 0.417 -2.971 8.021 1.00 6.10 ? 9 DMY A C16 1
HETATM 184 N N6 . DMY B 2 . ? 1.250 -4.029 8.113 1.00 6.49 ? 9 DMY A N6 1
HETATM 185 C C17 . DMY B 2 . ? 1.038 -4.833 7.075 1.00 6.17 ? 9 DMY A C17 1
HETATM 186 C C18 . DMY B 2 . ? 2.500 -4.216 9.003 1.00 6.25 ? 9 DMY A C18 1
HETATM 187 C C19 . DMY B 2 . ? 0.348 -1.935 8.997 1.00 5.94 ? 9 DMY A C19 1
HETATM 188 O O4 . DMY B 2 . ? 1.244 -1.695 9.825 1.00 7.35 ? 9 DMY A O4 1
HETATM 189 N N7 . DMY B 2 . ? -0.804 -1.249 9.004 1.00 4.49 ? 9 DMY A N7 1
HETATM 190 C C20 . DMY B 2 . ? -0.941 -0.100 9.896 1.00 3.44 ? 9 DMY A C20 1
HETATM 191 C C21 . DMY B 2 . ? -0.155 1.108 9.432 1.00 2.78 ? 9 DMY A C21 1
HETATM 192 C C22 . DMY B 2 . ? -0.428 2.408 10.162 1.00 2.34 ? 9 DMY A C22 1
HETATM 193 N N8 . DMY B 2 . ? 0.491 2.814 10.999 1.00 2.00 ? 9 DMY A N8 1
HETATM 194 N N9 . DMY B 2 . ? -1.523 3.128 9.979 1.00 2.88 ? 9 DMY A N9 1
HETATM 195 O O . HOH C 3 . ? 11.596 -7.479 -3.013 1.00 5.63 ? 10 HOH A O 1
HETATM 196 O O . HOH C 3 . ? 3.224 1.487 11.419 1.00 6.21 ? 11 HOH A O 1
HETATM 197 O O . HOH C 3 . ? -13.534 0.377 7.884 1.00 6.80 ? 12 HOH A O 1
HETATM 198 O O . HOH C 3 . ? -10.706 9.185 6.784 1.00 8.97 ? 13 HOH A O 1
HETATM 199 O O . HOH C 3 . ? -10.251 6.624 6.236 1.00 10.34 ? 14 HOH A O 1
HETATM 200 O O . HOH C 3 . ? -3.127 4.062 12.032 1.00 13.16 ? 15 HOH A O 1
HETATM 201 O O . HOH C 3 . ? -6.326 9.225 6.043 1.00 13.74 ? 16 HOH A O 1
HETATM 202 O O . HOH C 3 . ? 5.844 7.524 7.586 1.00 14.90 ? 17 HOH A O 1
HETATM 203 O O . HOH C 3 . ? 5.128 5.938 9.938 1.00 15.06 ? 18 HOH A O 1
HETATM 204 O O . HOH C 3 . ? -2.771 0.248 -15.463 1.00 15.44 ? 19 HOH A O 1
HETATM 205 O O . HOH C 3 . ? -10.109 4.007 5.089 1.00 16.02 ? 20 HOH A O 1
HETATM 206 O O . HOH C 3 . ? 7.926 1.646 -0.570 1.00 17.93 ? 21 HOH A O 1
HETATM 207 O O . HOH C 3 . ? 9.222 0.754 6.149 1.00 18.15 ? 22 HOH A O 1
HETATM 208 O O . HOH C 3 . ? 7.835 -9.808 -4.636 1.00 18.96 ? 23 HOH A O 1
HETATM 209 O O . HOH C 3 . ? -12.222 5.236 7.704 1.00 20.37 ? 24 HOH A O 1
HETATM 210 O O . HOH C 3 . ? -0.238 -10.928 5.526 1.00 20.74 ? 25 HOH A O 1
HETATM 211 O O . HOH C 3 . ? 8.658 2.624 2.023 1.00 21.68 ? 26 HOH A O 1
HETATM 212 O O . HOH C 3 . ? 4.259 -10.920 -0.972 1.00 22.05 ? 27 HOH A O 1
HETATM 213 O O . HOH C 3 . ? -12.086 2.090 9.249 1.00 23.60 ? 28 HOH A O 1
HETATM 214 O O . HOH C 3 . ? 7.943 0.701 11.108 1.00 23.64 ? 29 HOH A O 1
HETATM 215 O O . HOH C 3 . ? -0.495 0.798 -13.439 1.00 25.07 ? 30 HOH A O 1
HETATM 216 O O . HOH C 3 . ? 8.105 6.135 4.892 1.00 25.26 ? 31 HOH A O 1
HETATM 217 O O . HOH C 3 . ? -4.651 5.899 3.400 1.00 25.29 ? 32 HOH A O 1
HETATM 218 O O . HOH C 3 . ? 5.703 2.323 10.679 1.00 25.42 ? 33 HOH A O 1
HETATM 219 O O . HOH C 3 . ? 10.101 -2.092 -0.651 1.00 25.63 ? 34 HOH A O 1
HETATM 220 O O . HOH C 3 . ? 3.529 -10.615 -10.645 1.00 29.02 ? 35 HOH A O 1
HETATM 221 O O . HOH C 3 . ? -0.402 10.768 10.418 1.00 29.07 ? 36 HOH A O 1
HETATM 222 O O . HOH C 3 . ? -1.919 6.461 13.006 1.00 29.33 ? 37 HOH A O 1
HETATM 223 O O . HOH C 3 . ? 7.508 -7.208 -7.468 1.00 29.42 ? 38 HOH A O 1
HETATM 224 O O . HOH C 3 . ? 7.855 -8.635 -10.322 1.00 29.48 ? 39 HOH A O 1
HETATM 225 O O . HOH C 3 . ? 4.058 -0.472 9.244 1.00 31.26 ? 40 HOH A O 1
HETATM 226 O O . HOH C 3 . ? -1.267 -9.550 -9.620 1.00 31.34 ? 41 HOH A O 1
HETATM 227 O O . HOH C 3 . ? 8.473 -0.452 8.495 1.00 31.60 ? 42 HOH A O 1
HETATM 228 O O . HOH C 3 . ? 12.623 -3.332 -1.703 1.00 34.46 ? 43 HOH A O 1
HETATM 229 O O . HOH C 3 . ? -2.019 -7.302 -12.103 1.00 35.49 ? 44 HOH A O 1
HETATM 230 O O . HOH C 3 . ? 6.209 -6.521 -10.211 1.00 36.27 ? 45 HOH A O 1
HETATM 231 O O . HOH C 3 . ? 1.907 -9.245 7.021 1.00 37.45 ? 46 HOH A O 1
HETATM 232 O O . HOH C 3 . ? 10.925 -5.212 0.533 1.00 44.11 ? 47 HOH A O 1
HETATM 233 O O . HOH C 3 . ? -2.677 5.825 1.313 1.00 44.49 ? 48 HOH A O 1
HETATM 234 O O . HOH C 3 . ? -5.195 -0.596 -16.223 1.00 46.73 ? 49 HOH A O 1
HETATM 235 O O . HOH C 3 . ? 7.421 2.677 -3.009 1.00 48.02 ? 50 HOH A O 1
HETATM 236 O O . HOH C 3 . ? 2.862 -12.183 -3.377 1.00 53.02 ? 51 HOH A O 1
HETATM 237 O O . HOH C 3 . ? 7.707 6.922 10.228 1.00 54.26 ? 52 HOH A O 1
#