data_2Z9Q
#
_entry.id 2Z9Q
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2Z9Q pdb_00002z9q 10.2210/pdb2z9q/pdb
RCSB RCSB027698 ? ?
WWPDB D_1000027698 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2007-10-16
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2019-12-11
4 'Structure model' 1 3 2024-03-13
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Non-polymer description'
2 2 'Structure model' 'Version format compliance'
3 3 'Structure model' 'Data collection'
4 3 'Structure model' 'Database references'
5 4 'Structure model' 'Data collection'
6 4 'Structure model' 'Database references'
7 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' database_2
2 3 'Structure model' em_software
3 4 'Structure model' chem_comp_atom
4 4 'Structure model' chem_comp_bond
5 4 'Structure model' database_2
6 4 'Structure model' em_3d_fitting_list
7 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_em_software.image_processing_id'
2 4 'Structure model' '_database_2.pdbx_DOI'
3 4 'Structure model' '_database_2.pdbx_database_accession'
4 4 'Structure model' '_em_3d_fitting_list.accession_code'
5 4 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id'
6 4 'Structure model' '_em_3d_fitting_list.source_name'
7 4 'Structure model' '_em_3d_fitting_list.type'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 2Z9Q
_pdbx_database_status.recvd_initial_deposition_date 2007-09-25
_pdbx_database_status.deposit_site PDBJ
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1TTT 'coordinates for starting the MD simulation' unspecified
PDB 1PN6 'coordinates of fitting structure of EF-G as a reference position for the P/E-tRNA.' unspecified
EMDB EMD-1363 . 'associated EM volume'
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Frank, J.' 1
'Li, W.' 2
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'Transfer RNA in the hybrid P/E state' 'To be Published' ? ? ? ? ? ? ? 0353 ? ?
?
1 'Locking and unlocking of ribosomal motions' 'Cell(Cambridge,Mass.)' 114 123 134 2003 CELLB5 US 0092-8674 0998 ? 12859903
'10.1016/S0092-8674(03)00476-8'
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Li, W.' 1 ?
primary 'Frank, J.' 2 ?
1 'Valle, M.' 3 ?
1 'Zavialov, A.' 4 ?
1 'Sengupta, J.' 5 ?
1 'Rawat, U.' 6 ?
1 'Ehrenberg, M.' 7 ?
1 'Frank, J.' 8 ?
#
_entity.id 1
_entity.type polymer
_entity.src_method nat
_entity.pdbx_description tRNA
_entity.formula_weight 24544.916
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type polyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code
;CGGAUUUA(2MG)CUCAG(H2U)(H2U)GGGAGAGC(M2G)CCAGA(OMC)U(OMG)AA(YYG)A(PSU)(5MC)UGGAG
(7MG)UC(5MC)UGUG(5MU)(PSU)CG(1MA)UCCACAGAAUUCGCACCA
;
_entity_poly.pdbx_seq_one_letter_code_can CGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 C n
1 2 G n
1 3 G n
1 4 A n
1 5 U n
1 6 U n
1 7 U n
1 8 A n
1 9 2MG n
1 10 C n
1 11 U n
1 12 C n
1 13 A n
1 14 G n
1 15 H2U n
1 16 H2U n
1 17 G n
1 18 G n
1 19 G n
1 20 A n
1 21 G n
1 22 A n
1 23 G n
1 24 C n
1 25 M2G n
1 26 C n
1 27 C n
1 28 A n
1 29 G n
1 30 A n
1 31 OMC n
1 32 U n
1 33 OMG n
1 34 A n
1 35 A n
1 36 YYG n
1 37 A n
1 38 PSU n
1 39 5MC n
1 40 U n
1 41 G n
1 42 G n
1 43 A n
1 44 G n
1 45 7MG n
1 46 U n
1 47 C n
1 48 5MC n
1 49 U n
1 50 G n
1 51 U n
1 52 G n
1 53 5MU n
1 54 PSU n
1 55 C n
1 56 G n
1 57 1MA n
1 58 U n
1 59 C n
1 60 C n
1 61 A n
1 62 C n
1 63 A n
1 64 G n
1 65 A n
1 66 A n
1 67 U n
1 68 U n
1 69 C n
1 70 G n
1 71 C n
1 72 A n
1 73 C n
1 74 C n
1 75 A n
#
_entity_src_nat.entity_id 1
_entity_src_nat.pdbx_src_id 1
_entity_src_nat.pdbx_alt_source_flag sample
_entity_src_nat.pdbx_beg_seq_num ?
_entity_src_nat.pdbx_end_seq_num ?
_entity_src_nat.common_name ?
_entity_src_nat.pdbx_organism_scientific 'Thermus aquaticus'
_entity_src_nat.pdbx_ncbi_taxonomy_id 271
_entity_src_nat.genus Thermus
_entity_src_nat.species ?
_entity_src_nat.strain ?
_entity_src_nat.tissue ?
_entity_src_nat.tissue_fraction ?
_entity_src_nat.pdbx_secretion ?
_entity_src_nat.pdbx_fragment ?
_entity_src_nat.pdbx_variant ?
_entity_src_nat.pdbx_cell_line ?
_entity_src_nat.pdbx_atcc ?
_entity_src_nat.pdbx_cellular_location ?
_entity_src_nat.pdbx_organ ?
_entity_src_nat.pdbx_organelle ?
_entity_src_nat.pdbx_cell ?
_entity_src_nat.pdbx_plasmid_name ?
_entity_src_nat.pdbx_plasmid_details ?
_entity_src_nat.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
1MA 'RNA linking' n "6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O7 P' 361.248
2MG 'RNA linking' n "2N-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247
5MC 'RNA linking' n "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223
5MU 'RNA linking' n
;5-METHYLURIDINE 5'-MONOPHOSPHATE
;
? 'C10 H15 N2 O9 P' 338.208
7MG 'RNA linking' n "7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H18 N5 O8 P' 379.263
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221
H2U 'RNA linking' n "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" ? 'C9 H15 N2 O9 P' 326.197
M2G 'RNA linking' n "N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C12 H18 N5 O8 P' 391.274
OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223
OMG 'RNA linking' n "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247
PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181
U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181
YYG 'RNA linking' n
'4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-4,6-DIMETHYL-8-OXO-4,8-DIHYDRO-3H-1,3,4,5,7A-PENTAAZA-S-INDACEN-YLAMINO-BUTYRIC ACID METHYL ESTER'
;MODIFIED GUANOSINE-5'-PHOSPHATE
;
'C21 H29 N6 O12 P' 588.462
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 C 1 1 1 C C A . n
A 1 2 G 2 2 2 G G A . n
A 1 3 G 3 3 3 G G A . n
A 1 4 A 4 4 4 A A A . n
A 1 5 U 5 5 5 U U A . n
A 1 6 U 6 6 6 U U A . n
A 1 7 U 7 7 7 U U A . n
A 1 8 A 8 8 8 A A A . n
A 1 9 2MG 9 9 9 2MG 2MG A . n
A 1 10 C 10 10 10 C C A . n
A 1 11 U 11 11 11 U U A . n
A 1 12 C 12 12 12 C C A . n
A 1 13 A 13 13 13 A A A . n
A 1 14 G 14 14 14 G G A . n
A 1 15 H2U 15 15 15 H2U H2U A . n
A 1 16 H2U 16 16 16 H2U H2U A . n
A 1 17 G 17 17 17 G G A . n
A 1 18 G 18 18 18 G G A . n
A 1 19 G 19 19 19 G G A . n
A 1 20 A 20 20 20 A A A . n
A 1 21 G 21 21 21 G G A . n
A 1 22 A 22 22 22 A A A . n
A 1 23 G 23 23 23 G G A . n
A 1 24 C 24 24 24 C C A . n
A 1 25 M2G 25 25 25 M2G M2G A . n
A 1 26 C 26 26 26 C C A . n
A 1 27 C 27 27 27 C C A . n
A 1 28 A 28 28 28 A A A . n
A 1 29 G 29 29 29 G G A . n
A 1 30 A 30 30 30 A A A . n
A 1 31 OMC 31 31 31 OMC OMC A . n
A 1 32 U 32 32 32 U U A . n
A 1 33 OMG 33 33 33 OMG OMG A . n
A 1 34 A 34 34 34 A A A . n
A 1 35 A 35 35 35 A A A . n
A 1 36 YYG 36 36 36 YYG YYG A . n
A 1 37 A 37 37 37 A A A . n
A 1 38 PSU 38 38 38 PSU PSU A . n
A 1 39 5MC 39 39 39 5MC 5MC A . n
A 1 40 U 40 40 40 U U A . n
A 1 41 G 41 41 41 G G A . n
A 1 42 G 42 42 42 G G A . n
A 1 43 A 43 43 43 A A A . n
A 1 44 G 44 44 44 G G A . n
A 1 45 7MG 45 45 45 7MG 7MG A . n
A 1 46 U 46 46 46 U U A . n
A 1 47 C 47 47 47 C C A . n
A 1 48 5MC 48 48 48 5MC 5MC A . n
A 1 49 U 49 49 49 U U A . n
A 1 50 G 50 50 50 G G A . n
A 1 51 U 51 51 51 U U A . n
A 1 52 G 52 52 52 G G A . n
A 1 53 5MU 53 53 53 5MU 5MU A . n
A 1 54 PSU 54 54 54 PSU PSU A . n
A 1 55 C 55 55 55 C C A . n
A 1 56 G 56 56 56 G G A . n
A 1 57 1MA 57 57 57 1MA 1MA A . n
A 1 58 U 58 58 58 U U A . n
A 1 59 C 59 59 59 C C A . n
A 1 60 C 60 60 60 C C A . n
A 1 61 A 61 61 61 A A A . n
A 1 62 C 62 62 62 C C A . n
A 1 63 A 63 63 63 A A A . n
A 1 64 G 64 64 64 G G A . n
A 1 65 A 65 65 65 A A A . n
A 1 66 A 66 66 66 A A A . n
A 1 67 U 67 67 67 U U A . n
A 1 68 U 68 68 68 U U A . n
A 1 69 C 69 69 69 C C A . n
A 1 70 G 70 70 70 G G A . n
A 1 71 C 71 71 71 C C A . n
A 1 72 A 72 72 72 A A A . n
A 1 73 C 73 73 73 C C A . n
A 1 74 C 74 74 74 C C A . n
A 1 75 A 75 75 75 A A A . n
#
_cell.entry_id 2Z9Q
_cell.length_a 1.000
_cell.length_b 1.000
_cell.length_c 1.000
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 1
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 2Z9Q
_symmetry.space_group_name_H-M 'P 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 1
#
_exptl.entry_id 2Z9Q
_exptl.method 'ELECTRON MICROSCOPY'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 75
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 75
_refine_hist.d_res_high .
_refine_hist.d_res_low .
#
_database_PDB_matrix.entry_id 2Z9Q
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 2Z9Q
_struct.title 'Transfer RNA in the hybrid P/E state'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2Z9Q
_struct_keywords.pdbx_keywords RNA
_struct_keywords.text 'distorted anticodon-stem-loop, twisted CCA arm, RNA'
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 2Z9Q
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;CGGAUUUA(2MG)CUCAG(H2U)(H2U)GGGAGAGC(M2G)CCAGA(OMC)U(OMG)AA(YYG)A(PSU)(5MC)UGGAG
(7MG)UC(5MC)UGUG(5MU)(PSU)CG(1MA)UCCACAGAAUUCGCACCA
;
_struct_ref.pdbx_align_begin 1
_struct_ref.pdbx_db_accession 2Z9Q
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 2Z9Q
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 75
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 2Z9Q
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 75
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 75
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A 2MG 9 A 2MG 9 ? G "2N-METHYLGUANOSINE-5'-MONOPHOSPHATE"
2 A H2U 15 A H2U 15 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE"
3 A H2U 16 A H2U 16 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE"
4 A M2G 25 A M2G 25 ? G "N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE"
5 A OMC 31 A OMC 31 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE"
6 A OMG 33 A OMG 33 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE"
7 A YYG 36 A YYG 36 ? G ?
8 A PSU 38 A PSU 38 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE"
9 A 5MC 39 A 5MC 39 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE"
10 A 7MG 45 A 7MG 45 ? G ?
11 A 5MC 48 A 5MC 48 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE"
12 A 5MU 53 A 5MU 53 ? U
;5-METHYLURIDINE 5'-MONOPHOSPHATE
;
13 A PSU 54 A PSU 54 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE"
14 A 1MA 57 A 1MA 57 ? A ?
#
_em_3d_fitting.id 1
_em_3d_fitting.entry_id 2Z9Q
_em_3d_fitting.ref_protocol OTHER
_em_3d_fitting.ref_space REAL
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.target_criteria 'cross correlation coefficient'
_em_3d_fitting.details 'REFINEMENT PROTOCOL--auto'
_em_3d_fitting.method ?
#
_em_3d_fitting_list.3d_fitting_id 1
_em_3d_fitting_list.id 1
_em_3d_fitting_list.pdb_entry_id 1TTT
_em_3d_fitting_list.pdb_chain_id ?
_em_3d_fitting_list.details ?
_em_3d_fitting_list.initial_refinement_model_id 1
_em_3d_fitting_list.chain_id ?
_em_3d_fitting_list.chain_residue_range ?
_em_3d_fitting_list.pdb_chain_residue_range ?
_em_3d_fitting_list.source_name PDB
_em_3d_fitting_list.type 'experimental model'
_em_3d_fitting_list.accession_code 1TTT
#
_em_3d_reconstruction.entry_id 2Z9Q
_em_3d_reconstruction.id 1
_em_3d_reconstruction.symmetry_type POINT
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.method 'single particle reconstruction'
_em_3d_reconstruction.nominal_pixel_size 2.80
_em_3d_reconstruction.actual_pixel_size 2.82
_em_3d_reconstruction.resolution 11.7
_em_3d_reconstruction.magnification_calibration TMV
_em_3d_reconstruction.details 'THE STRUCTURE CONTAINS P ATOMS ONLY'
_em_3d_reconstruction.resolution_method ?
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.num_particles ?
_em_3d_reconstruction.algorithm ?
#
_em_buffer.id 1
_em_buffer.specimen_id 1
_em_buffer.name polymix
_em_buffer.pH 7.5
_em_buffer.details polymix
#
_em_entity_assembly.id 1
_em_entity_assembly.name 'EF-G bound Release Complex in the presence of Puromycin and GDPNP'
_em_entity_assembly.type RIBOSOME
_em_entity_assembly.parent_id 0
_em_entity_assembly.synonym ?
_em_entity_assembly.details ?
_em_entity_assembly.oligomeric_details ?
#
_em_image_scans.entry_id 2Z9Q
_em_image_scans.id 1
_em_image_scans.image_recording_id 1
_em_image_scans.number_digital_images 38858
_em_image_scans.citation_id ?
_em_image_scans.od_range ?
_em_image_scans.quant_bit_size ?
_em_image_scans.sampling_size ?
_em_image_scans.scanner_model ?
_em_image_scans.details ?
#
_em_imaging.entry_id 2Z9Q
_em_imaging.id 1
_em_imaging.microscope_model 'FEI TECNAI F20'
_em_imaging.mode 'BRIGHT FIELD'
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.specimen_id 1
_em_imaging.date 2001-06-01
_em_imaging.temperature 80
_em_imaging.nominal_defocus_min 1.750
_em_imaging.nominal_defocus_max 3.925
_em_imaging.tilt_angle_min 0
_em_imaging.tilt_angle_max 0
_em_imaging.nominal_cs 2.00
_em_imaging.nominal_magnification 50000
_em_imaging.calibrated_magnification 49696
_em_imaging.accelerating_voltage 200
_em_imaging.details 'SAMPLES WERE MAINTAINED AT LIQUID NITROGEN'
_em_imaging.specimen_holder_type .
_em_imaging.specimen_holder_model .
_em_imaging.citation_id ?
_em_imaging.detector_distance ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.astigmatism ?
_em_imaging.electron_beam_tilt_params ?
#
_em_sample_support.id 1
_em_sample_support.specimen_id 1
_em_sample_support.details 'carbon on quantifoil grids'
_em_sample_support.film_material ?
_em_sample_support.grid_material ?
_em_sample_support.grid_mesh_size ?
_em_sample_support.grid_type ?
_em_sample_support.method ?
#
_em_vitrification.entry_id 2Z9Q
_em_vitrification.id 1
_em_vitrification.cryogen_name ETHANE
_em_vitrification.details 'PLUNGED INTO ETHANE'
_em_vitrification.citation_id ?
_em_vitrification.humidity ?
_em_vitrification.instrument ?
_em_vitrification.method ?
_em_vitrification.specimen_id 1
_em_vitrification.temp ?
_em_vitrification.time_resolved_state ?
#
_em_experiment.entry_id 2Z9Q
_em_experiment.id 1
_em_experiment.aggregation_state PARTICLE
_em_experiment.entity_assembly_id 1
_em_experiment.reconstruction_method 'SINGLE PARTICLE'
#
_em_single_particle_entity.entry_id 2Z9Q
_em_single_particle_entity.id 1
_em_single_particle_entity.point_symmetry C1
_em_single_particle_entity.image_processing_id 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
1MA P P N N 1
1MA OP1 O N N 2
1MA OP2 O N N 3
1MA OP3 O N N 4
1MA "O5'" O N N 5
1MA "C5'" C N N 6
1MA "C4'" C N R 7
1MA "O4'" O N N 8
1MA "C3'" C N S 9
1MA "O3'" O N N 10
1MA "C2'" C N R 11
1MA "O2'" O N N 12
1MA "C1'" C N R 13
1MA N9 N Y N 14
1MA C8 C Y N 15
1MA N7 N Y N 16
1MA C5 C Y N 17
1MA C6 C N N 18
1MA N6 N N N 19
1MA N1 N N N 20
1MA CM1 C N N 21
1MA C2 C N N 22
1MA N3 N N N 23
1MA C4 C Y N 24
1MA HOP2 H N N 25
1MA HOP3 H N N 26
1MA "H5'" H N N 27
1MA "H5''" H N N 28
1MA "H4'" H N N 29
1MA "H3'" H N N 30
1MA "HO3'" H N N 31
1MA "H2'" H N N 32
1MA "HO2'" H N N 33
1MA "H1'" H N N 34
1MA H8 H N N 35
1MA HN61 H N N 36
1MA HM11 H N N 37
1MA HM12 H N N 38
1MA HM13 H N N 39
1MA H2 H N N 40
2MG P P N N 41
2MG OP1 O N N 42
2MG OP2 O N N 43
2MG OP3 O N N 44
2MG "O5'" O N N 45
2MG "C5'" C N N 46
2MG "C4'" C N R 47
2MG "O4'" O N N 48
2MG "C3'" C N S 49
2MG "O3'" O N N 50
2MG "C2'" C N R 51
2MG "O2'" O N N 52
2MG "C1'" C N R 53
2MG N9 N Y N 54
2MG C8 C Y N 55
2MG N7 N Y N 56
2MG C5 C Y N 57
2MG C6 C N N 58
2MG O6 O N N 59
2MG N1 N N N 60
2MG C2 C N N 61
2MG N2 N N N 62
2MG CM2 C N N 63
2MG N3 N N N 64
2MG C4 C Y N 65
2MG HOP2 H N N 66
2MG HOP3 H N N 67
2MG "H5'" H N N 68
2MG "H5''" H N N 69
2MG "H4'" H N N 70
2MG "H3'" H N N 71
2MG "HO3'" H N N 72
2MG "H2'" H N N 73
2MG "HO2'" H N N 74
2MG "H1'" H N N 75
2MG H8 H N N 76
2MG HN1 H N N 77
2MG HN2 H N N 78
2MG HM21 H N N 79
2MG HM22 H N N 80
2MG HM23 H N N 81
5MC P P N N 82
5MC OP1 O N N 83
5MC OP2 O N N 84
5MC OP3 O N N 85
5MC "O5'" O N N 86
5MC "C5'" C N N 87
5MC "C4'" C N R 88
5MC "O4'" O N N 89
5MC "C3'" C N S 90
5MC "O3'" O N N 91
5MC "C2'" C N R 92
5MC "O2'" O N N 93
5MC "C1'" C N R 94
5MC N1 N N N 95
5MC C2 C N N 96
5MC O2 O N N 97
5MC N3 N N N 98
5MC C4 C N N 99
5MC N4 N N N 100
5MC C5 C N N 101
5MC C6 C N N 102
5MC CM5 C N N 103
5MC HOP2 H N N 104
5MC HOP3 H N N 105
5MC "H5'" H N N 106
5MC "H5''" H N N 107
5MC "H4'" H N N 108
5MC "H3'" H N N 109
5MC "HO3'" H N N 110
5MC "H2'" H N N 111
5MC "HO2'" H N N 112
5MC "H1'" H N N 113
5MC HN41 H N N 114
5MC HN42 H N N 115
5MC H6 H N N 116
5MC HM51 H N N 117
5MC HM52 H N N 118
5MC HM53 H N N 119
5MU N1 N N N 120
5MU C2 C N N 121
5MU N3 N N N 122
5MU C4 C N N 123
5MU C5 C N N 124
5MU C5M C N N 125
5MU C6 C N N 126
5MU O2 O N N 127
5MU O4 O N N 128
5MU "C1'" C N R 129
5MU "C2'" C N R 130
5MU "O2'" O N N 131
5MU "C3'" C N S 132
5MU "C4'" C N R 133
5MU "O3'" O N N 134
5MU "O4'" O N N 135
5MU "C5'" C N N 136
5MU "O5'" O N N 137
5MU P P N N 138
5MU OP1 O N N 139
5MU OP2 O N N 140
5MU OP3 O N N 141
5MU HN3 H N N 142
5MU H71 H N N 143
5MU H72 H N N 144
5MU H73 H N N 145
5MU H6 H N N 146
5MU "H1'" H N N 147
5MU "H2'" H N N 148
5MU "HO2'" H N N 149
5MU "H3'" H N N 150
5MU "H4'" H N N 151
5MU "HO3'" H N N 152
5MU "H5'" H N N 153
5MU "H5''" H N N 154
5MU HOP2 H N N 155
5MU HOP3 H N N 156
7MG P P N N 157
7MG OP1 O N N 158
7MG OP2 O N N 159
7MG OP3 O N N 160
7MG "O5'" O N N 161
7MG "C5'" C N N 162
7MG "C4'" C N R 163
7MG "O4'" O N N 164
7MG "C3'" C N S 165
7MG "O3'" O N N 166
7MG "C2'" C N R 167
7MG "O2'" O N N 168
7MG "C1'" C N R 169
7MG N9 N N N 170
7MG C8 C N N 171
7MG N7 N N N 172
7MG C5 C N N 173
7MG C6 C N N 174
7MG O6 O N N 175
7MG N1 N N N 176
7MG C2 C N N 177
7MG N2 N N N 178
7MG N3 N N N 179
7MG C4 C N N 180
7MG CM7 C N N 181
7MG HOP2 H N N 182
7MG HOP3 H N N 183
7MG "H5'" H N N 184
7MG "H5''" H N N 185
7MG "H4'" H N N 186
7MG "H3'" H N N 187
7MG "HO3'" H N N 188
7MG "H2'" H N N 189
7MG "HO2'" H N N 190
7MG "H1'" H N N 191
7MG H81 H N N 192
7MG H82 H N N 193
7MG HN1 H N N 194
7MG HN21 H N N 195
7MG HN22 H N N 196
7MG HM71 H N N 197
7MG HM72 H N N 198
7MG HM73 H N N 199
A OP3 O N N 200
A P P N N 201
A OP1 O N N 202
A OP2 O N N 203
A "O5'" O N N 204
A "C5'" C N N 205
A "C4'" C N R 206
A "O4'" O N N 207
A "C3'" C N S 208
A "O3'" O N N 209
A "C2'" C N R 210
A "O2'" O N N 211
A "C1'" C N R 212
A N9 N Y N 213
A C8 C Y N 214
A N7 N Y N 215
A C5 C Y N 216
A C6 C Y N 217
A N6 N N N 218
A N1 N Y N 219
A C2 C Y N 220
A N3 N Y N 221
A C4 C Y N 222
A HOP3 H N N 223
A HOP2 H N N 224
A "H5'" H N N 225
A "H5''" H N N 226
A "H4'" H N N 227
A "H3'" H N N 228
A "HO3'" H N N 229
A "H2'" H N N 230
A "HO2'" H N N 231
A "H1'" H N N 232
A H8 H N N 233
A H61 H N N 234
A H62 H N N 235
A H2 H N N 236
C OP3 O N N 237
C P P N N 238
C OP1 O N N 239
C OP2 O N N 240
C "O5'" O N N 241
C "C5'" C N N 242
C "C4'" C N R 243
C "O4'" O N N 244
C "C3'" C N S 245
C "O3'" O N N 246
C "C2'" C N R 247
C "O2'" O N N 248
C "C1'" C N R 249
C N1 N N N 250
C C2 C N N 251
C O2 O N N 252
C N3 N N N 253
C C4 C N N 254
C N4 N N N 255
C C5 C N N 256
C C6 C N N 257
C HOP3 H N N 258
C HOP2 H N N 259
C "H5'" H N N 260
C "H5''" H N N 261
C "H4'" H N N 262
C "H3'" H N N 263
C "HO3'" H N N 264
C "H2'" H N N 265
C "HO2'" H N N 266
C "H1'" H N N 267
C H41 H N N 268
C H42 H N N 269
C H5 H N N 270
C H6 H N N 271
G OP3 O N N 272
G P P N N 273
G OP1 O N N 274
G OP2 O N N 275
G "O5'" O N N 276
G "C5'" C N N 277
G "C4'" C N R 278
G "O4'" O N N 279
G "C3'" C N S 280
G "O3'" O N N 281
G "C2'" C N R 282
G "O2'" O N N 283
G "C1'" C N R 284
G N9 N Y N 285
G C8 C Y N 286
G N7 N Y N 287
G C5 C Y N 288
G C6 C N N 289
G O6 O N N 290
G N1 N N N 291
G C2 C N N 292
G N2 N N N 293
G N3 N N N 294
G C4 C Y N 295
G HOP3 H N N 296
G HOP2 H N N 297
G "H5'" H N N 298
G "H5''" H N N 299
G "H4'" H N N 300
G "H3'" H N N 301
G "HO3'" H N N 302
G "H2'" H N N 303
G "HO2'" H N N 304
G "H1'" H N N 305
G H8 H N N 306
G H1 H N N 307
G H21 H N N 308
G H22 H N N 309
H2U P P N N 310
H2U OP1 O N N 311
H2U OP2 O N N 312
H2U OP3 O N N 313
H2U "O5'" O N N 314
H2U "C5'" C N N 315
H2U "C4'" C N R 316
H2U "O4'" O N N 317
H2U "C3'" C N S 318
H2U "O3'" O N N 319
H2U "C1'" C N R 320
H2U "C2'" C N R 321
H2U "O2'" O N N 322
H2U N1 N N N 323
H2U C2 C N N 324
H2U O2 O N N 325
H2U N3 N N N 326
H2U C4 C N N 327
H2U O4 O N N 328
H2U C5 C N N 329
H2U C6 C N N 330
H2U HOP2 H N N 331
H2U HOP3 H N N 332
H2U "H5'" H N N 333
H2U "H5''" H N N 334
H2U "H4'" H N N 335
H2U "H3'" H N N 336
H2U "HO3'" H N N 337
H2U "H1'" H N N 338
H2U "H2'" H N N 339
H2U "HO2'" H N N 340
H2U HN3 H N N 341
H2U H51 H N N 342
H2U H52 H N N 343
H2U H61 H N N 344
H2U H62 H N N 345
M2G P P N N 346
M2G OP1 O N N 347
M2G OP2 O N N 348
M2G OP3 O N N 349
M2G "O5'" O N N 350
M2G "C5'" C N N 351
M2G "C4'" C N R 352
M2G "O4'" O N N 353
M2G "C3'" C N S 354
M2G "O3'" O N N 355
M2G "C2'" C N R 356
M2G "O2'" O N N 357
M2G "C1'" C N R 358
M2G N9 N Y N 359
M2G C8 C Y N 360
M2G N7 N Y N 361
M2G C5 C Y N 362
M2G C6 C N N 363
M2G O6 O N N 364
M2G N1 N N N 365
M2G C2 C N N 366
M2G N2 N N N 367
M2G N3 N N N 368
M2G C4 C Y N 369
M2G CM1 C N N 370
M2G CM2 C N N 371
M2G HOP2 H N N 372
M2G HOP3 H N N 373
M2G "H5'" H N N 374
M2G "H5''" H N N 375
M2G "H4'" H N N 376
M2G "H3'" H N N 377
M2G "HO3'" H N N 378
M2G "H2'" H N N 379
M2G "HO2'" H N N 380
M2G "H1'" H N N 381
M2G H8 H N N 382
M2G HN1 H N N 383
M2G HM11 H N N 384
M2G HM12 H N N 385
M2G HM13 H N N 386
M2G HM21 H N N 387
M2G HM22 H N N 388
M2G HM23 H N N 389
OMC N1 N N N 390
OMC C2 C N N 391
OMC N3 N N N 392
OMC C4 C N N 393
OMC C5 C N N 394
OMC C6 C N N 395
OMC O2 O N N 396
OMC N4 N N N 397
OMC "C1'" C N R 398
OMC "C2'" C N R 399
OMC "O2'" O N N 400
OMC CM2 C N N 401
OMC "C3'" C N R 402
OMC "C4'" C N R 403
OMC "O4'" O N N 404
OMC "O3'" O N N 405
OMC "C5'" C N N 406
OMC "O5'" O N N 407
OMC P P N N 408
OMC OP1 O N N 409
OMC OP2 O N N 410
OMC OP3 O N N 411
OMC H5 H N N 412
OMC H6 H N N 413
OMC HN41 H N N 414
OMC HN42 H N N 415
OMC "H1'" H N N 416
OMC "H2'" H N N 417
OMC HM21 H N N 418
OMC HM22 H N N 419
OMC HM23 H N N 420
OMC "H3'" H N N 421
OMC "H4'" H N N 422
OMC "HO3'" H N N 423
OMC "H5'" H N N 424
OMC "H5''" H N N 425
OMC HOP2 H N N 426
OMC HOP3 H N N 427
OMG P P N N 428
OMG OP1 O N N 429
OMG OP2 O N N 430
OMG OP3 O N N 431
OMG "O5'" O N N 432
OMG "C5'" C N N 433
OMG "C4'" C N R 434
OMG "O4'" O N N 435
OMG "C3'" C N R 436
OMG "O3'" O N N 437
OMG "C2'" C N R 438
OMG "O2'" O N N 439
OMG CM2 C N N 440
OMG "C1'" C N R 441
OMG N9 N Y N 442
OMG C8 C Y N 443
OMG N7 N Y N 444
OMG C5 C Y N 445
OMG C6 C N N 446
OMG O6 O N N 447
OMG N1 N N N 448
OMG C2 C N N 449
OMG N2 N N N 450
OMG N3 N N N 451
OMG C4 C Y N 452
OMG HOP2 H N N 453
OMG HOP3 H N N 454
OMG "H5'" H N N 455
OMG "H5''" H N N 456
OMG "H4'" H N N 457
OMG "H3'" H N N 458
OMG "HO3'" H N N 459
OMG "H2'" H N N 460
OMG HM21 H N N 461
OMG HM22 H N N 462
OMG HM23 H N N 463
OMG "H1'" H N N 464
OMG H8 H N N 465
OMG HN1 H N N 466
OMG HN21 H N N 467
OMG HN22 H N N 468
PSU N1 N N N 469
PSU C2 C N N 470
PSU N3 N N N 471
PSU C4 C N N 472
PSU C5 C N N 473
PSU C6 C N N 474
PSU O2 O N N 475
PSU O4 O N N 476
PSU "C1'" C N S 477
PSU "C2'" C N R 478
PSU "O2'" O N N 479
PSU "C3'" C N S 480
PSU "C4'" C N R 481
PSU "O3'" O N N 482
PSU "O4'" O N N 483
PSU "C5'" C N N 484
PSU "O5'" O N N 485
PSU P P N N 486
PSU OP1 O N N 487
PSU OP2 O N N 488
PSU OP3 O N N 489
PSU HN1 H N N 490
PSU HN3 H N N 491
PSU H6 H N N 492
PSU "H1'" H N N 493
PSU "H2'" H N N 494
PSU "HO2'" H N N 495
PSU "H3'" H N N 496
PSU "H4'" H N N 497
PSU "HO3'" H N N 498
PSU "H5'" H N N 499
PSU "H5''" H N N 500
PSU HOP2 H N N 501
PSU HOP3 H N N 502
U OP3 O N N 503
U P P N N 504
U OP1 O N N 505
U OP2 O N N 506
U "O5'" O N N 507
U "C5'" C N N 508
U "C4'" C N R 509
U "O4'" O N N 510
U "C3'" C N S 511
U "O3'" O N N 512
U "C2'" C N R 513
U "O2'" O N N 514
U "C1'" C N R 515
U N1 N N N 516
U C2 C N N 517
U O2 O N N 518
U N3 N N N 519
U C4 C N N 520
U O4 O N N 521
U C5 C N N 522
U C6 C N N 523
U HOP3 H N N 524
U HOP2 H N N 525
U "H5'" H N N 526
U "H5''" H N N 527
U "H4'" H N N 528
U "H3'" H N N 529
U "HO3'" H N N 530
U "H2'" H N N 531
U "HO2'" H N N 532
U "H1'" H N N 533
U H3 H N N 534
U H5 H N N 535
U H6 H N N 536
YYG P P N N 537
YYG OP1 O N N 538
YYG OP2 O N N 539
YYG OP3 O N N 540
YYG "O5'" O N N 541
YYG "C5'" C N N 542
YYG "C4'" C N R 543
YYG "O4'" O N N 544
YYG "C3'" C N S 545
YYG "O3'" O N N 546
YYG "C2'" C N R 547
YYG "O2'" O N N 548
YYG "C1'" C N R 549
YYG N9 N Y N 550
YYG C8 C Y N 551
YYG N7 N Y N 552
YYG C5 C Y N 553
YYG C6 C N N 554
YYG O6 O N N 555
YYG N1 N Y N 556
YYG C2 C Y N 557
YYG N2 N Y N 558
YYG N3 N N N 559
YYG C3 C N N 560
YYG C4 C Y N 561
YYG C10 C N N 562
YYG C11 C Y N 563
YYG C12 C Y N 564
YYG C13 C N N 565
YYG C14 C N N 566
YYG C15 C N S 567
YYG C16 C N N 568
YYG O17 O N N 569
YYG O18 O N N 570
YYG C19 C N N 571
YYG N20 N N N 572
YYG C21 C N N 573
YYG O22 O N N 574
YYG O23 O N N 575
YYG C24 C N N 576
YYG HOP2 H N N 577
YYG HOP3 H N N 578
YYG "H5'" H N N 579
YYG "H5''" H N N 580
YYG "H4'" H N N 581
YYG "H3'" H N N 582
YYG "HO3'" H N N 583
YYG "H2'" H N N 584
YYG "HO2'" H N N 585
YYG "H1'" H N N 586
YYG H8 H N N 587
YYG H31 H N N 588
YYG H32 H N N 589
YYG H33 H N N 590
YYG H101 H N N 591
YYG H102 H N N 592
YYG H103 H N N 593
YYG H131 H N N 594
YYG H132 H N N 595
YYG H141 H N N 596
YYG H142 H N N 597
YYG H15 H N N 598
YYG H191 H N N 599
YYG H192 H N N 600
YYG H193 H N N 601
YYG HN20 H N N 602
YYG H241 H N N 603
YYG H242 H N N 604
YYG H243 H N N 605
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1MA P OP1 doub N N 1
1MA P OP2 sing N N 2
1MA P OP3 sing N N 3
1MA P "O5'" sing N N 4
1MA OP2 HOP2 sing N N 5
1MA OP3 HOP3 sing N N 6
1MA "O5'" "C5'" sing N N 7
1MA "C5'" "C4'" sing N N 8
1MA "C5'" "H5'" sing N N 9
1MA "C5'" "H5''" sing N N 10
1MA "C4'" "O4'" sing N N 11
1MA "C4'" "C3'" sing N N 12
1MA "C4'" "H4'" sing N N 13
1MA "O4'" "C1'" sing N N 14
1MA "C3'" "O3'" sing N N 15
1MA "C3'" "C2'" sing N N 16
1MA "C3'" "H3'" sing N N 17
1MA "O3'" "HO3'" sing N N 18
1MA "C2'" "O2'" sing N N 19
1MA "C2'" "C1'" sing N N 20
1MA "C2'" "H2'" sing N N 21
1MA "O2'" "HO2'" sing N N 22
1MA "C1'" N9 sing N N 23
1MA "C1'" "H1'" sing N N 24
1MA N9 C8 sing Y N 25
1MA N9 C4 sing Y N 26
1MA C8 N7 doub Y N 27
1MA C8 H8 sing N N 28
1MA N7 C5 sing Y N 29
1MA C5 C6 sing N N 30
1MA C5 C4 doub Y N 31
1MA C6 N6 doub N N 32
1MA C6 N1 sing N N 33
1MA N6 HN61 sing N N 34
1MA N1 CM1 sing N N 35
1MA N1 C2 sing N N 36
1MA CM1 HM11 sing N N 37
1MA CM1 HM12 sing N N 38
1MA CM1 HM13 sing N N 39
1MA C2 N3 doub N N 40
1MA C2 H2 sing N N 41
1MA N3 C4 sing N N 42
2MG P OP1 doub N N 43
2MG P OP2 sing N N 44
2MG P OP3 sing N N 45
2MG P "O5'" sing N N 46
2MG OP2 HOP2 sing N N 47
2MG OP3 HOP3 sing N N 48
2MG "O5'" "C5'" sing N N 49
2MG "C5'" "C4'" sing N N 50
2MG "C5'" "H5'" sing N N 51
2MG "C5'" "H5''" sing N N 52
2MG "C4'" "O4'" sing N N 53
2MG "C4'" "C3'" sing N N 54
2MG "C4'" "H4'" sing N N 55
2MG "O4'" "C1'" sing N N 56
2MG "C3'" "O3'" sing N N 57
2MG "C3'" "C2'" sing N N 58
2MG "C3'" "H3'" sing N N 59
2MG "O3'" "HO3'" sing N N 60
2MG "C2'" "O2'" sing N N 61
2MG "C2'" "C1'" sing N N 62
2MG "C2'" "H2'" sing N N 63
2MG "O2'" "HO2'" sing N N 64
2MG "C1'" N9 sing N N 65
2MG "C1'" "H1'" sing N N 66
2MG N9 C8 sing Y N 67
2MG N9 C4 sing Y N 68
2MG C8 N7 doub Y N 69
2MG C8 H8 sing N N 70
2MG N7 C5 sing Y N 71
2MG C5 C6 sing N N 72
2MG C5 C4 doub Y N 73
2MG C6 O6 doub N N 74
2MG C6 N1 sing N N 75
2MG N1 C2 sing N N 76
2MG N1 HN1 sing N N 77
2MG C2 N2 sing N N 78
2MG C2 N3 doub N N 79
2MG N2 CM2 sing N N 80
2MG N2 HN2 sing N N 81
2MG CM2 HM21 sing N N 82
2MG CM2 HM22 sing N N 83
2MG CM2 HM23 sing N N 84
2MG N3 C4 sing N N 85
5MC P OP1 doub N N 86
5MC P OP2 sing N N 87
5MC P OP3 sing N N 88
5MC P "O5'" sing N N 89
5MC OP2 HOP2 sing N N 90
5MC OP3 HOP3 sing N N 91
5MC "O5'" "C5'" sing N N 92
5MC "C5'" "C4'" sing N N 93
5MC "C5'" "H5'" sing N N 94
5MC "C5'" "H5''" sing N N 95
5MC "C4'" "O4'" sing N N 96
5MC "C4'" "C3'" sing N N 97
5MC "C4'" "H4'" sing N N 98
5MC "O4'" "C1'" sing N N 99
5MC "C3'" "O3'" sing N N 100
5MC "C3'" "C2'" sing N N 101
5MC "C3'" "H3'" sing N N 102
5MC "O3'" "HO3'" sing N N 103
5MC "C2'" "O2'" sing N N 104
5MC "C2'" "C1'" sing N N 105
5MC "C2'" "H2'" sing N N 106
5MC "O2'" "HO2'" sing N N 107
5MC "C1'" N1 sing N N 108
5MC "C1'" "H1'" sing N N 109
5MC N1 C2 sing N N 110
5MC N1 C6 sing N N 111
5MC C2 O2 doub N N 112
5MC C2 N3 sing N N 113
5MC N3 C4 doub N N 114
5MC C4 N4 sing N N 115
5MC C4 C5 sing N N 116
5MC N4 HN41 sing N N 117
5MC N4 HN42 sing N N 118
5MC C5 C6 doub N N 119
5MC C5 CM5 sing N N 120
5MC C6 H6 sing N N 121
5MC CM5 HM51 sing N N 122
5MC CM5 HM52 sing N N 123
5MC CM5 HM53 sing N N 124
5MU N1 C2 sing N N 125
5MU N1 C6 sing N N 126
5MU N1 "C1'" sing N N 127
5MU C2 N3 sing N N 128
5MU C2 O2 doub N N 129
5MU N3 C4 sing N N 130
5MU N3 HN3 sing N N 131
5MU C4 C5 sing N N 132
5MU C4 O4 doub N N 133
5MU C5 C5M sing N N 134
5MU C5 C6 doub N N 135
5MU C5M H71 sing N N 136
5MU C5M H72 sing N N 137
5MU C5M H73 sing N N 138
5MU C6 H6 sing N N 139
5MU "C1'" "C2'" sing N N 140
5MU "C1'" "O4'" sing N N 141
5MU "C1'" "H1'" sing N N 142
5MU "C2'" "O2'" sing N N 143
5MU "C2'" "C3'" sing N N 144
5MU "C2'" "H2'" sing N N 145
5MU "O2'" "HO2'" sing N N 146
5MU "C3'" "C4'" sing N N 147
5MU "C3'" "O3'" sing N N 148
5MU "C3'" "H3'" sing N N 149
5MU "C4'" "O4'" sing N N 150
5MU "C4'" "C5'" sing N N 151
5MU "C4'" "H4'" sing N N 152
5MU "O3'" "HO3'" sing N N 153
5MU "C5'" "O5'" sing N N 154
5MU "C5'" "H5'" sing N N 155
5MU "C5'" "H5''" sing N N 156
5MU "O5'" P sing N N 157
5MU P OP1 doub N N 158
5MU P OP2 sing N N 159
5MU P OP3 sing N N 160
5MU OP2 HOP2 sing N N 161
5MU OP3 HOP3 sing N N 162
7MG P OP1 doub N N 163
7MG P OP2 sing N N 164
7MG P OP3 sing N N 165
7MG P "O5'" sing N N 166
7MG OP2 HOP2 sing N N 167
7MG OP3 HOP3 sing N N 168
7MG "O5'" "C5'" sing N N 169
7MG "C5'" "C4'" sing N N 170
7MG "C5'" "H5'" sing N N 171
7MG "C5'" "H5''" sing N N 172
7MG "C4'" "O4'" sing N N 173
7MG "C4'" "C3'" sing N N 174
7MG "C4'" "H4'" sing N N 175
7MG "O4'" "C1'" sing N N 176
7MG "C3'" "O3'" sing N N 177
7MG "C3'" "C2'" sing N N 178
7MG "C3'" "H3'" sing N N 179
7MG "O3'" "HO3'" sing N N 180
7MG "C2'" "O2'" sing N N 181
7MG "C2'" "C1'" sing N N 182
7MG "C2'" "H2'" sing N N 183
7MG "O2'" "HO2'" sing N N 184
7MG "C1'" N9 sing N N 185
7MG "C1'" "H1'" sing N N 186
7MG N9 C8 sing N N 187
7MG N9 C4 sing N N 188
7MG C8 N7 sing N N 189
7MG C8 H81 sing N N 190
7MG C8 H82 sing N N 191
7MG N7 C5 sing N N 192
7MG N7 CM7 sing N N 193
7MG C5 C6 sing N N 194
7MG C5 C4 doub N N 195
7MG C6 O6 doub N N 196
7MG C6 N1 sing N N 197
7MG N1 C2 sing N N 198
7MG N1 HN1 sing N N 199
7MG C2 N2 sing N N 200
7MG C2 N3 doub N N 201
7MG N2 HN21 sing N N 202
7MG N2 HN22 sing N N 203
7MG N3 C4 sing N N 204
7MG CM7 HM71 sing N N 205
7MG CM7 HM72 sing N N 206
7MG CM7 HM73 sing N N 207
A OP3 P sing N N 208
A OP3 HOP3 sing N N 209
A P OP1 doub N N 210
A P OP2 sing N N 211
A P "O5'" sing N N 212
A OP2 HOP2 sing N N 213
A "O5'" "C5'" sing N N 214
A "C5'" "C4'" sing N N 215
A "C5'" "H5'" sing N N 216
A "C5'" "H5''" sing N N 217
A "C4'" "O4'" sing N N 218
A "C4'" "C3'" sing N N 219
A "C4'" "H4'" sing N N 220
A "O4'" "C1'" sing N N 221
A "C3'" "O3'" sing N N 222
A "C3'" "C2'" sing N N 223
A "C3'" "H3'" sing N N 224
A "O3'" "HO3'" sing N N 225
A "C2'" "O2'" sing N N 226
A "C2'" "C1'" sing N N 227
A "C2'" "H2'" sing N N 228
A "O2'" "HO2'" sing N N 229
A "C1'" N9 sing N N 230
A "C1'" "H1'" sing N N 231
A N9 C8 sing Y N 232
A N9 C4 sing Y N 233
A C8 N7 doub Y N 234
A C8 H8 sing N N 235
A N7 C5 sing Y N 236
A C5 C6 sing Y N 237
A C5 C4 doub Y N 238
A C6 N6 sing N N 239
A C6 N1 doub Y N 240
A N6 H61 sing N N 241
A N6 H62 sing N N 242
A N1 C2 sing Y N 243
A C2 N3 doub Y N 244
A C2 H2 sing N N 245
A N3 C4 sing Y N 246
C OP3 P sing N N 247
C OP3 HOP3 sing N N 248
C P OP1 doub N N 249
C P OP2 sing N N 250
C P "O5'" sing N N 251
C OP2 HOP2 sing N N 252
C "O5'" "C5'" sing N N 253
C "C5'" "C4'" sing N N 254
C "C5'" "H5'" sing N N 255
C "C5'" "H5''" sing N N 256
C "C4'" "O4'" sing N N 257
C "C4'" "C3'" sing N N 258
C "C4'" "H4'" sing N N 259
C "O4'" "C1'" sing N N 260
C "C3'" "O3'" sing N N 261
C "C3'" "C2'" sing N N 262
C "C3'" "H3'" sing N N 263
C "O3'" "HO3'" sing N N 264
C "C2'" "O2'" sing N N 265
C "C2'" "C1'" sing N N 266
C "C2'" "H2'" sing N N 267
C "O2'" "HO2'" sing N N 268
C "C1'" N1 sing N N 269
C "C1'" "H1'" sing N N 270
C N1 C2 sing N N 271
C N1 C6 sing N N 272
C C2 O2 doub N N 273
C C2 N3 sing N N 274
C N3 C4 doub N N 275
C C4 N4 sing N N 276
C C4 C5 sing N N 277
C N4 H41 sing N N 278
C N4 H42 sing N N 279
C C5 C6 doub N N 280
C C5 H5 sing N N 281
C C6 H6 sing N N 282
G OP3 P sing N N 283
G OP3 HOP3 sing N N 284
G P OP1 doub N N 285
G P OP2 sing N N 286
G P "O5'" sing N N 287
G OP2 HOP2 sing N N 288
G "O5'" "C5'" sing N N 289
G "C5'" "C4'" sing N N 290
G "C5'" "H5'" sing N N 291
G "C5'" "H5''" sing N N 292
G "C4'" "O4'" sing N N 293
G "C4'" "C3'" sing N N 294
G "C4'" "H4'" sing N N 295
G "O4'" "C1'" sing N N 296
G "C3'" "O3'" sing N N 297
G "C3'" "C2'" sing N N 298
G "C3'" "H3'" sing N N 299
G "O3'" "HO3'" sing N N 300
G "C2'" "O2'" sing N N 301
G "C2'" "C1'" sing N N 302
G "C2'" "H2'" sing N N 303
G "O2'" "HO2'" sing N N 304
G "C1'" N9 sing N N 305
G "C1'" "H1'" sing N N 306
G N9 C8 sing Y N 307
G N9 C4 sing Y N 308
G C8 N7 doub Y N 309
G C8 H8 sing N N 310
G N7 C5 sing Y N 311
G C5 C6 sing N N 312
G C5 C4 doub Y N 313
G C6 O6 doub N N 314
G C6 N1 sing N N 315
G N1 C2 sing N N 316
G N1 H1 sing N N 317
G C2 N2 sing N N 318
G C2 N3 doub N N 319
G N2 H21 sing N N 320
G N2 H22 sing N N 321
G N3 C4 sing N N 322
H2U P OP1 doub N N 323
H2U P OP2 sing N N 324
H2U P OP3 sing N N 325
H2U P "O5'" sing N N 326
H2U OP2 HOP2 sing N N 327
H2U OP3 HOP3 sing N N 328
H2U "O5'" "C5'" sing N N 329
H2U "C5'" "C4'" sing N N 330
H2U "C5'" "H5'" sing N N 331
H2U "C5'" "H5''" sing N N 332
H2U "C4'" "O4'" sing N N 333
H2U "C4'" "C3'" sing N N 334
H2U "C4'" "H4'" sing N N 335
H2U "O4'" "C1'" sing N N 336
H2U "C3'" "O3'" sing N N 337
H2U "C3'" "C2'" sing N N 338
H2U "C3'" "H3'" sing N N 339
H2U "O3'" "HO3'" sing N N 340
H2U "C1'" "C2'" sing N N 341
H2U "C1'" N1 sing N N 342
H2U "C1'" "H1'" sing N N 343
H2U "C2'" "O2'" sing N N 344
H2U "C2'" "H2'" sing N N 345
H2U "O2'" "HO2'" sing N N 346
H2U N1 C2 sing N N 347
H2U N1 C6 sing N N 348
H2U C2 O2 doub N N 349
H2U C2 N3 sing N N 350
H2U N3 C4 sing N N 351
H2U N3 HN3 sing N N 352
H2U C4 O4 doub N N 353
H2U C4 C5 sing N N 354
H2U C5 C6 sing N N 355
H2U C5 H51 sing N N 356
H2U C5 H52 sing N N 357
H2U C6 H61 sing N N 358
H2U C6 H62 sing N N 359
M2G P OP1 doub N N 360
M2G P OP2 sing N N 361
M2G P OP3 sing N N 362
M2G P "O5'" sing N N 363
M2G OP2 HOP2 sing N N 364
M2G OP3 HOP3 sing N N 365
M2G "O5'" "C5'" sing N N 366
M2G "C5'" "C4'" sing N N 367
M2G "C5'" "H5'" sing N N 368
M2G "C5'" "H5''" sing N N 369
M2G "C4'" "O4'" sing N N 370
M2G "C4'" "C3'" sing N N 371
M2G "C4'" "H4'" sing N N 372
M2G "O4'" "C1'" sing N N 373
M2G "C3'" "O3'" sing N N 374
M2G "C3'" "C2'" sing N N 375
M2G "C3'" "H3'" sing N N 376
M2G "O3'" "HO3'" sing N N 377
M2G "C2'" "O2'" sing N N 378
M2G "C2'" "C1'" sing N N 379
M2G "C2'" "H2'" sing N N 380
M2G "O2'" "HO2'" sing N N 381
M2G "C1'" N9 sing N N 382
M2G "C1'" "H1'" sing N N 383
M2G N9 C8 sing Y N 384
M2G N9 C4 sing Y N 385
M2G C8 N7 doub Y N 386
M2G C8 H8 sing N N 387
M2G N7 C5 sing Y N 388
M2G C5 C6 sing N N 389
M2G C5 C4 doub Y N 390
M2G C6 O6 doub N N 391
M2G C6 N1 sing N N 392
M2G N1 C2 sing N N 393
M2G N1 HN1 sing N N 394
M2G C2 N2 sing N N 395
M2G C2 N3 doub N N 396
M2G N2 CM1 sing N N 397
M2G N2 CM2 sing N N 398
M2G N3 C4 sing N N 399
M2G CM1 HM11 sing N N 400
M2G CM1 HM12 sing N N 401
M2G CM1 HM13 sing N N 402
M2G CM2 HM21 sing N N 403
M2G CM2 HM22 sing N N 404
M2G CM2 HM23 sing N N 405
OMC N1 C2 sing N N 406
OMC N1 C6 sing N N 407
OMC N1 "C1'" sing N N 408
OMC C2 N3 sing N N 409
OMC C2 O2 doub N N 410
OMC N3 C4 doub N N 411
OMC C4 C5 sing N N 412
OMC C4 N4 sing N N 413
OMC C5 C6 doub N N 414
OMC C5 H5 sing N N 415
OMC C6 H6 sing N N 416
OMC N4 HN41 sing N N 417
OMC N4 HN42 sing N N 418
OMC "C1'" "C2'" sing N N 419
OMC "C1'" "O4'" sing N N 420
OMC "C1'" "H1'" sing N N 421
OMC "C2'" "O2'" sing N N 422
OMC "C2'" "C3'" sing N N 423
OMC "C2'" "H2'" sing N N 424
OMC "O2'" CM2 sing N N 425
OMC CM2 HM21 sing N N 426
OMC CM2 HM22 sing N N 427
OMC CM2 HM23 sing N N 428
OMC "C3'" "C4'" sing N N 429
OMC "C3'" "O3'" sing N N 430
OMC "C3'" "H3'" sing N N 431
OMC "C4'" "O4'" sing N N 432
OMC "C4'" "C5'" sing N N 433
OMC "C4'" "H4'" sing N N 434
OMC "O3'" "HO3'" sing N N 435
OMC "C5'" "O5'" sing N N 436
OMC "C5'" "H5'" sing N N 437
OMC "C5'" "H5''" sing N N 438
OMC "O5'" P sing N N 439
OMC P OP1 doub N N 440
OMC P OP2 sing N N 441
OMC P OP3 sing N N 442
OMC OP2 HOP2 sing N N 443
OMC OP3 HOP3 sing N N 444
OMG P OP1 doub N N 445
OMG P OP2 sing N N 446
OMG P OP3 sing N N 447
OMG P "O5'" sing N N 448
OMG OP2 HOP2 sing N N 449
OMG OP3 HOP3 sing N N 450
OMG "O5'" "C5'" sing N N 451
OMG "C5'" "C4'" sing N N 452
OMG "C5'" "H5'" sing N N 453
OMG "C5'" "H5''" sing N N 454
OMG "C4'" "O4'" sing N N 455
OMG "C4'" "C3'" sing N N 456
OMG "C4'" "H4'" sing N N 457
OMG "O4'" "C1'" sing N N 458
OMG "C3'" "O3'" sing N N 459
OMG "C3'" "C2'" sing N N 460
OMG "C3'" "H3'" sing N N 461
OMG "O3'" "HO3'" sing N N 462
OMG "C2'" "O2'" sing N N 463
OMG "C2'" "C1'" sing N N 464
OMG "C2'" "H2'" sing N N 465
OMG "O2'" CM2 sing N N 466
OMG CM2 HM21 sing N N 467
OMG CM2 HM22 sing N N 468
OMG CM2 HM23 sing N N 469
OMG "C1'" N9 sing N N 470
OMG "C1'" "H1'" sing N N 471
OMG N9 C8 sing Y N 472
OMG N9 C4 sing Y N 473
OMG C8 N7 doub Y N 474
OMG C8 H8 sing N N 475
OMG N7 C5 sing Y N 476
OMG C5 C6 sing N N 477
OMG C5 C4 doub Y N 478
OMG C6 O6 doub N N 479
OMG C6 N1 sing N N 480
OMG N1 C2 sing N N 481
OMG N1 HN1 sing N N 482
OMG C2 N2 sing N N 483
OMG C2 N3 doub N N 484
OMG N2 HN21 sing N N 485
OMG N2 HN22 sing N N 486
OMG N3 C4 sing N N 487
PSU N1 C2 sing N N 488
PSU N1 C6 sing N N 489
PSU N1 HN1 sing N N 490
PSU C2 N3 sing N N 491
PSU C2 O2 doub N N 492
PSU N3 C4 sing N N 493
PSU N3 HN3 sing N N 494
PSU C4 C5 sing N N 495
PSU C4 O4 doub N N 496
PSU C5 C6 doub N N 497
PSU C5 "C1'" sing N N 498
PSU C6 H6 sing N N 499
PSU "C1'" "C2'" sing N N 500
PSU "C1'" "O4'" sing N N 501
PSU "C1'" "H1'" sing N N 502
PSU "C2'" "O2'" sing N N 503
PSU "C2'" "C3'" sing N N 504
PSU "C2'" "H2'" sing N N 505
PSU "O2'" "HO2'" sing N N 506
PSU "C3'" "C4'" sing N N 507
PSU "C3'" "O3'" sing N N 508
PSU "C3'" "H3'" sing N N 509
PSU "C4'" "O4'" sing N N 510
PSU "C4'" "C5'" sing N N 511
PSU "C4'" "H4'" sing N N 512
PSU "O3'" "HO3'" sing N N 513
PSU "C5'" "O5'" sing N N 514
PSU "C5'" "H5'" sing N N 515
PSU "C5'" "H5''" sing N N 516
PSU "O5'" P sing N N 517
PSU P OP1 doub N N 518
PSU P OP2 sing N N 519
PSU P OP3 sing N N 520
PSU OP2 HOP2 sing N N 521
PSU OP3 HOP3 sing N N 522
U OP3 P sing N N 523
U OP3 HOP3 sing N N 524
U P OP1 doub N N 525
U P OP2 sing N N 526
U P "O5'" sing N N 527
U OP2 HOP2 sing N N 528
U "O5'" "C5'" sing N N 529
U "C5'" "C4'" sing N N 530
U "C5'" "H5'" sing N N 531
U "C5'" "H5''" sing N N 532
U "C4'" "O4'" sing N N 533
U "C4'" "C3'" sing N N 534
U "C4'" "H4'" sing N N 535
U "O4'" "C1'" sing N N 536
U "C3'" "O3'" sing N N 537
U "C3'" "C2'" sing N N 538
U "C3'" "H3'" sing N N 539
U "O3'" "HO3'" sing N N 540
U "C2'" "O2'" sing N N 541
U "C2'" "C1'" sing N N 542
U "C2'" "H2'" sing N N 543
U "O2'" "HO2'" sing N N 544
U "C1'" N1 sing N N 545
U "C1'" "H1'" sing N N 546
U N1 C2 sing N N 547
U N1 C6 sing N N 548
U C2 O2 doub N N 549
U C2 N3 sing N N 550
U N3 C4 sing N N 551
U N3 H3 sing N N 552
U C4 O4 doub N N 553
U C4 C5 sing N N 554
U C5 C6 doub N N 555
U C5 H5 sing N N 556
U C6 H6 sing N N 557
YYG P OP1 doub N N 558
YYG P OP2 sing N N 559
YYG P OP3 sing N N 560
YYG P "O5'" sing N N 561
YYG OP2 HOP2 sing N N 562
YYG OP3 HOP3 sing N N 563
YYG "O5'" "C5'" sing N N 564
YYG "C5'" "C4'" sing N N 565
YYG "C5'" "H5'" sing N N 566
YYG "C5'" "H5''" sing N N 567
YYG "C4'" "O4'" sing N N 568
YYG "C4'" "C3'" sing N N 569
YYG "C4'" "H4'" sing N N 570
YYG "O4'" "C1'" sing N N 571
YYG "C3'" "O3'" sing N N 572
YYG "C3'" "C2'" sing N N 573
YYG "C3'" "H3'" sing N N 574
YYG "O3'" "HO3'" sing N N 575
YYG "C2'" "O2'" sing N N 576
YYG "C2'" "C1'" sing N N 577
YYG "C2'" "H2'" sing N N 578
YYG "O2'" "HO2'" sing N N 579
YYG "C1'" N9 sing N N 580
YYG "C1'" "H1'" sing N N 581
YYG N9 C8 sing Y N 582
YYG N9 C4 sing Y N 583
YYG C8 N7 doub Y N 584
YYG C8 H8 sing N N 585
YYG N7 C5 sing Y N 586
YYG C5 C6 sing N N 587
YYG C5 C4 doub Y N 588
YYG C6 O6 doub N N 589
YYG C6 N1 sing N N 590
YYG N1 C2 sing Y N 591
YYG N1 C12 sing Y N 592
YYG C2 N2 doub Y N 593
YYG C2 N3 sing N N 594
YYG N2 C11 sing Y N 595
YYG N3 C3 sing N N 596
YYG N3 C4 sing N N 597
YYG C3 H31 sing N N 598
YYG C3 H32 sing N N 599
YYG C3 H33 sing N N 600
YYG C10 C11 sing N N 601
YYG C10 H101 sing N N 602
YYG C10 H102 sing N N 603
YYG C10 H103 sing N N 604
YYG C11 C12 doub Y N 605
YYG C12 C13 sing N N 606
YYG C13 C14 sing N N 607
YYG C13 H131 sing N N 608
YYG C13 H132 sing N N 609
YYG C14 C15 sing N N 610
YYG C14 H141 sing N N 611
YYG C14 H142 sing N N 612
YYG C15 C16 sing N N 613
YYG C15 N20 sing N N 614
YYG C15 H15 sing N N 615
YYG C16 O17 doub N N 616
YYG C16 O18 sing N N 617
YYG O18 C19 sing N N 618
YYG C19 H191 sing N N 619
YYG C19 H192 sing N N 620
YYG C19 H193 sing N N 621
YYG N20 C21 sing N N 622
YYG N20 HN20 sing N N 623
YYG C21 O22 doub N N 624
YYG C21 O23 sing N N 625
YYG O23 C24 sing N N 626
YYG C24 H241 sing N N 627
YYG C24 H242 sing N N 628
YYG C24 H243 sing N N 629
#
_em_ctf_correction.id 1
_em_ctf_correction.details 'CTF correction of each defocus group reconstruction'
_em_ctf_correction.type .
#
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
_em_image_processing.details ?
#
_em_image_recording.details ?
_em_image_recording.id 1
_em_image_recording.avg_electron_dose_per_image 15
_em_image_recording.film_or_detector_model 'KODAK SO-163 FILM'
_em_image_recording.imaging_id 1
_em_image_recording.detector_mode ?
_em_image_recording.average_exposure_time ?
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
_em_software.id 1
_em_software.name SPIDER
_em_software.version ?
_em_software.category RECONSTRUCTION
_em_software.details 'Fast Motif Search Procedure in SPIDER. Reference: Rath and Frank 2004 JSB 145 page84'
_em_software.image_processing_id 1
#
_em_specimen.experiment_id 1
_em_specimen.id 1
_em_specimen.concentration 32
_em_specimen.vitrification_applied YES
_em_specimen.staining_applied NO
_em_specimen.embedding_applied NO
_em_specimen.shadowing_applied NO
_em_specimen.details ?
#
_pdbx_coordinate_model.asym_id A
_pdbx_coordinate_model.type 'P ATOMS ONLY'
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1TTT
#
_atom_sites.entry_id 2Z9Q
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
_atom_type.symbol P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 P P . C A 1 1 ? -14.930 -53.123 25.540 1.00 10.00 ? 1 C A P 1
ATOM 2 P P . G A 1 2 ? -19.319 -50.341 29.207 1.00 10.00 ? 2 G A P 1
ATOM 3 P P . G A 1 3 ? -24.194 -45.226 30.319 1.00 10.00 ? 3 G A P 1
ATOM 4 P P . A A 1 4 ? -27.637 -40.442 30.702 1.00 10.00 ? 4 A A P 1
ATOM 5 P P . U A 1 5 ? -31.420 -36.117 28.621 1.00 10.00 ? 5 U A P 1
ATOM 6 P P . U A 1 6 ? -35.287 -35.045 24.391 1.00 10.00 ? 6 U A P 1
ATOM 7 P P . U A 1 7 ? -38.095 -33.869 18.380 1.00 10.00 ? 7 U A P 1
ATOM 8 P P . A A 1 8 ? -43.421 -32.141 17.878 1.00 10.00 ? 8 A A P 1
HETATM 9 P P . 2MG A 1 9 ? -46.229 -30.855 12.830 1.00 10.00 ? 9 2MG A P 1
ATOM 10 P P . C A 1 10 ? -40.050 -28.350 11.818 1.00 10.00 ? 10 C A P 1
ATOM 11 P P . U A 1 11 ? -36.941 -25.027 16.534 1.00 10.00 ? 11 U A P 1
ATOM 12 P P . C A 1 12 ? -35.673 -23.240 21.825 1.00 10.00 ? 12 C A P 1
ATOM 13 P P . A A 1 13 ? -37.970 -26.575 27.583 1.00 10.00 ? 13 A A P 1
ATOM 14 P P . G A 1 14 ? -40.063 -27.830 32.245 1.00 10.00 ? 14 G A P 1
HETATM 15 P P . H2U A 1 15 ? -40.464 -33.744 34.043 1.00 10.00 ? 15 H2U A P 1
HETATM 16 P P . H2U A 1 16 ? -40.488 -39.811 35.485 1.00 10.00 ? 16 H2U A P 1
ATOM 17 P P . G A 1 17 ? -45.751 -44.639 36.005 1.00 10.00 ? 17 G A P 1
ATOM 18 P P . G A 1 18 ? -50.821 -43.712 33.795 1.00 10.00 ? 18 G A P 1
ATOM 19 P P . G A 1 19 ? -56.236 -41.471 30.677 1.00 10.00 ? 19 G A P 1
ATOM 20 P P . A A 1 20 ? -54.385 -38.683 26.557 1.00 10.00 ? 20 A A P 1
ATOM 21 P P . G A 1 21 ? -54.105 -32.759 26.449 1.00 10.00 ? 21 G A P 1
ATOM 22 P P . A A 1 22 ? -53.470 -26.925 27.564 1.00 10.00 ? 22 A A P 1
ATOM 23 P P . G A 1 23 ? -51.760 -20.204 25.213 1.00 10.00 ? 23 G A P 1
ATOM 24 P P . C A 1 24 ? -48.590 -15.284 21.299 1.00 10.00 ? 24 C A P 1
HETATM 25 P P . M2G A 1 25 ? -47.419 -14.164 15.590 1.00 10.00 ? 25 M2G A P 1
ATOM 26 P P . C A 1 26 ? -48.696 -15.537 9.963 1.00 10.00 ? 26 C A P 1
ATOM 27 P P . C A 1 27 ? -52.726 -16.621 6.762 1.00 10.00 ? 27 C A P 1
ATOM 28 P P . A A 1 28 ? -58.394 -16.393 5.398 1.00 10.00 ? 28 A A P 1
ATOM 29 P P . G A 1 29 ? -63.860 -14.237 7.157 1.00 10.00 ? 29 G A P 1
ATOM 30 P P . A A 1 30 ? -67.473 -10.822 10.680 1.00 10.00 ? 30 A A P 1
HETATM 31 P P . OMC A 1 31 ? -69.254 -7.393 15.934 1.00 10.00 ? 31 OMC A P 1
ATOM 32 P P . U A 1 32 ? -66.784 -2.724 18.589 1.00 10.00 ? 32 U A P 1
HETATM 33 P P . OMG A 1 33 ? -65.655 2.329 16.532 1.00 10.00 ? 33 OMG A P 1
ATOM 34 P P . A A 1 34 ? -63.503 0.509 12.001 1.00 10.00 ? 34 A A P 1
ATOM 35 P P . A A 1 35 ? -58.320 -2.911 10.626 1.00 10.00 ? 35 A A P 1
HETATM 36 P P . YYG A 1 36 ? -53.522 -5.830 13.079 1.00 10.00 ? 36 YYG A P 1
ATOM 37 P P . A A 1 37 ? -50.595 -7.374 18.299 1.00 10.00 ? 37 A A P 1
HETATM 38 P P . PSU A 1 38 ? -52.660 -9.922 23.441 1.00 10.00 ? 38 PSU A P 1
HETATM 39 P P . 5MC A 1 39 ? -57.137 -14.463 24.748 1.00 10.00 ? 39 5MC A P 1
ATOM 40 P P . U A 1 40 ? -62.174 -18.626 24.198 1.00 10.00 ? 40 U A P 1
ATOM 41 P P . G A 1 41 ? -64.634 -22.295 20.929 1.00 10.00 ? 41 G A P 1
ATOM 42 P P . G A 1 42 ? -63.840 -26.157 16.363 1.00 10.00 ? 42 G A P 1
ATOM 43 P P . A A 1 43 ? -61.886 -29.153 12.431 1.00 10.00 ? 43 A A P 1
ATOM 44 P P . G A 1 44 ? -56.424 -31.686 12.493 1.00 10.00 ? 44 G A P 1
HETATM 45 P P . 7MG A 1 45 ? -51.298 -33.556 12.124 1.00 10.00 ? 45 7MG A P 1
ATOM 46 P P . U A 1 46 ? -49.177 -38.400 13.609 1.00 10.00 ? 46 U A P 1
ATOM 47 P P . C A 1 47 ? -46.352 -41.484 19.444 1.00 10.00 ? 47 C A P 1
HETATM 48 P P . 5MC A 1 48 ? -40.293 -39.224 20.698 1.00 10.00 ? 48 5MC A P 1
ATOM 49 P P . U A 1 49 ? -41.961 -42.797 15.493 1.00 10.00 ? 49 U A P 1
ATOM 50 P P . G A 1 50 ? -42.120 -47.777 12.947 1.00 10.00 ? 50 G A P 1
ATOM 51 P P . U A 1 51 ? -43.427 -53.100 13.162 1.00 10.00 ? 51 U A P 1
ATOM 52 P P . G A 1 52 ? -45.080 -57.913 17.112 1.00 10.00 ? 52 G A P 1
HETATM 53 P P . 5MU A 1 53 ? -45.931 -60.347 23.701 1.00 10.00 ? 53 5MU A P 1
HETATM 54 P P . PSU A 1 54 ? -47.889 -60.481 28.748 1.00 10.00 ? 54 PSU A P 1
ATOM 55 P P . C A 1 55 ? -52.694 -59.383 31.692 1.00 10.00 ? 55 C A P 1
ATOM 56 P P . G A 1 56 ? -54.393 -56.212 27.295 1.00 10.00 ? 56 G A P 1
HETATM 57 P P . 1MA A 1 57 ? -52.381 -50.885 25.266 1.00 10.00 ? 57 1MA A P 1
ATOM 58 P P . U A 1 58 ? -49.697 -44.986 24.395 1.00 10.00 ? 58 U A P 1
ATOM 59 P P . C A 1 59 ? -44.254 -46.142 24.910 1.00 10.00 ? 59 C A P 1
ATOM 60 P P . C A 1 60 ? -39.896 -45.466 30.136 1.00 10.00 ? 60 C A P 1
ATOM 61 P P . A A 1 61 ? -37.053 -50.103 30.057 1.00 10.00 ? 61 A A P 1
ATOM 62 P P . C A 1 62 ? -33.584 -54.299 27.868 1.00 10.00 ? 62 C A P 1
ATOM 63 P P . A A 1 63 ? -30.363 -55.942 23.445 1.00 10.00 ? 63 A A P 1
ATOM 64 P P . G A 1 64 ? -28.415 -52.859 18.219 1.00 10.00 ? 64 G A P 1
ATOM 65 P P . A A 1 65 ? -27.745 -48.674 13.367 1.00 10.00 ? 65 A A P 1
ATOM 66 P P . A A 1 66 ? -27.530 -43.841 10.361 1.00 10.00 ? 66 A A P 1
ATOM 67 P P . U A 1 67 ? -25.273 -38.405 12.757 1.00 10.00 ? 67 U A P 1
ATOM 68 P P . U A 1 68 ? -23.126 -33.790 15.369 1.00 10.00 ? 68 U A P 1
ATOM 69 P P . C A 1 69 ? -20.122 -32.125 20.123 1.00 10.00 ? 69 C A P 1
ATOM 70 P P . G A 1 70 ? -16.278 -33.268 23.855 1.00 10.00 ? 70 G A P 1
ATOM 71 P P . C A 1 71 ? -11.710 -35.792 27.674 1.00 10.00 ? 71 C A P 1
ATOM 72 P P . A A 1 72 ? -7.487 -40.169 29.988 1.00 10.00 ? 72 A A P 1
ATOM 73 P P . C A 1 73 ? -4.198 -45.249 27.918 1.00 10.00 ? 73 C A P 1
ATOM 74 P P . C A 1 74 ? -3.111 -49.932 22.688 1.00 10.00 ? 74 C A P 1
ATOM 75 P P . A A 1 75 ? 3.778 -48.307 20.830 1.00 10.00 ? 75 A A P 1
#