data_2XC6
#
_entry.id 2XC6
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.394
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2XC6 pdb_00002xc6 10.2210/pdb2xc6/pdb
PDBE EBI-43667 ? ?
WWPDB D_1290043667 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2011-05-04
2 'Structure model' 1 1 2011-10-12
3 'Structure model' 2 0 2022-06-22
4 'Structure model' 2 1 2024-06-19
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
5 3 'Structure model' Other
6 3 'Structure model' 'Polymer sequence'
7 4 'Structure model' 'Data collection'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp
2 3 'Structure model' database_2
3 3 'Structure model' entity_poly
4 3 'Structure model' pdbx_database_status
5 3 'Structure model' struct_conn
6 3 'Structure model' struct_site
7 4 'Structure model' chem_comp_atom
8 4 'Structure model' chem_comp_bond
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_chem_comp.mon_nstd_flag'
2 3 'Structure model' '_chem_comp.type'
3 3 'Structure model' '_database_2.pdbx_DOI'
4 3 'Structure model' '_database_2.pdbx_database_accession'
5 3 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can'
6 3 'Structure model' '_pdbx_database_status.status_code_sf'
7 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
8 3 'Structure model' '_struct_site.pdbx_auth_asym_id'
9 3 'Structure model' '_struct_site.pdbx_auth_comp_id'
10 3 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 2XC6
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.SG_entry .
_pdbx_database_status.recvd_initial_deposition_date 2010-04-16
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Schlegel, M.K.' 1
'Essen, L.-O.' 2
'Meggers, E.' 3
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'On the Structure and Dynamics of Duplex Gna.' J.Org.Chem. 76 7964 ? 2011 JOCEAH US
0022-3263 0035 ? 21838272 10.1021/JO201469B
1 'Duplex Structure of a Minimal Nucleic Acid.' J.Am.Chem.Soc. 130 8158 ? 2008 JACSAT US
0002-7863 0004 ? 18529005 10.1021/JA802788G
2 'Atomic Resolution Duplex Structure of the Simplified Nucleic Acid Gna.' 'Chem.Commun.(Camb.)' 46 1094 ? 2010 ? UK
1359-7345 ? ? 20126724 10.1039/B916851F
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Johnson, A.T.' 1 ?
primary 'Schlegel, M.K.' 2 ?
primary 'Meggers, E.' 3 ?
primary 'Essen, L.O.' 4 ?
primary 'Wiest, O.' 5 ?
1 'Schlegel, M.K.' 6 ?
1 'Essen, L.-O.' 7 ?
1 'Meggers, E.' 8 ?
2 'Schlegel, M.K.' 9 ?
2 'Essen, L.-O.' 10 ?
2 'Meggers, E.' 11 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn GNA 2155.194 1 ? ? ?
;SYNTHETIC GLYCOL NUCLEIC ACID 3'-((ZCY)P(ZTH)P(ZCY)P(ZBU)P(ZAD)P(ZGU)P(ZAD)P(ZGU))-2'
;
2 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ?
3 water nat water 18.015 21 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(ZCY)(ZTH)(ZCY)(ZBU)(ZAD)(ZGU)(ZAD)(ZGU)'
_entity_poly.pdbx_seq_one_letter_code_can CXCUAGAG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'SODIUM ION' NA
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ZCY n
1 2 ZTH n
1 3 ZCY n
1 4 ZBU n
1 5 ZAD n
1 6 ZGU n
1 7 ZAD n
1 8 ZGU n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
HOH non-polymer . WATER ? 'H2 O' 18.015
NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990
ZAD 'RNA linking' n "(S)-1'-(2',3'-DIHYDROXYPROPYL)-ADENINE" ? 'C8 H12 N5 O5 P' 289.185
ZBU 'RNA linking' n "(S)-1'-(2',3'-DIHYDROXYPROPYL)-5-BROMO-URACIL" ? 'C7 H10 Br N2 O7 P' 345.041
ZCY 'RNA linking' n "(S)-1'-(2',3'-DIHYDROXYPROPYL)-CYTOSINE" ? 'C7 H12 N3 O6 P' 265.160
ZGU 'RNA linking' n "(S)-1'-(2',3'-DIHYDROXYPROPYL)-GUANINE" ? 'C8 H12 N5 O6 P' 305.185
ZTH non-polymer . "(S)-1'-(2',3'-DIHYDROXYPROPYL)-THYMINE" ? 'C8 H13 N2 O7 P' 280.172
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ZCY 1 1 1 ZCY ZCY A . n
A 1 2 ZTH 2 2 2 ZTH ZTH A . n
A 1 3 ZCY 3 3 3 ZCY ZCY A . n
A 1 4 ZBU 4 4 4 ZBU ZBU A . n
A 1 5 ZAD 5 5 5 ZAD ZAD A . n
A 1 6 ZGU 6 6 6 ZGU ZGU A . n
A 1 7 ZAD 7 7 7 ZAD ZAD A . n
A 1 8 ZGU 8 8 8 ZGU ZGU A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA 1 1001 1001 NA NA A .
C 2 NA 1 1002 1002 NA NA A .
D 3 HOH 1 2001 2001 HOH HOH A .
D 3 HOH 2 2002 2002 HOH HOH A .
D 3 HOH 3 2003 2003 HOH HOH A .
D 3 HOH 4 2004 2004 HOH HOH A .
D 3 HOH 5 2005 2005 HOH HOH A .
D 3 HOH 6 2006 2006 HOH HOH A .
D 3 HOH 7 2007 2007 HOH HOH A .
D 3 HOH 8 2008 2008 HOH HOH A .
D 3 HOH 9 2009 2009 HOH HOH A .
D 3 HOH 10 2010 2010 HOH HOH A .
D 3 HOH 11 2011 2011 HOH HOH A .
D 3 HOH 12 2012 2012 HOH HOH A .
D 3 HOH 13 2013 2013 HOH HOH A .
D 3 HOH 14 2014 2014 HOH HOH A .
D 3 HOH 15 2015 2015 HOH HOH A .
D 3 HOH 16 2016 2016 HOH HOH A .
D 3 HOH 17 2017 2017 HOH HOH A .
D 3 HOH 18 2018 2018 HOH HOH A .
D 3 HOH 19 2019 2019 HOH HOH A .
D 3 HOH 20 2020 2020 HOH HOH A .
D 3 HOH 21 2021 2021 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.5.0102 ? 1
XDS 'data reduction' . ? 2
XSCALE 'data scaling' . ? 3
SHELXE phasing . ? 4
#
_cell.entry_id 2XC6
_cell.length_a 56.930
_cell.length_b 56.930
_cell.length_c 28.970
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 16
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 2XC6
_symmetry.space_group_name_H-M 'I 41 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 98
#
_exptl.entry_id 2XC6
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.62
_exptl_crystal.density_percent_sol 56
_exptl_crystal.description NONE
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 5.5
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details '10 % MPD, 40 MM SODIUM CACODYLATE, PH 5.5, 20 MM COBALT HEXAMINE, 40 MM LICL, 20 MM MGCL2'
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC CCD'
_diffrn_detector.pdbx_collection_date 2007-11-24
_diffrn_detector.details MIRRORS
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol MAD
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.91985
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID23-1'
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID23-1
_diffrn_source.pdbx_wavelength 0.91985
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 2XC6
_reflns.observed_criterion_sigma_I -3.0
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 15.88
_reflns.d_resolution_high 1.83
_reflns.number_obs 2242
_reflns.number_all ?
_reflns.percent_possible_obs 99.0
_reflns.pdbx_Rmerge_I_obs 0.05
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 32.20
_reflns.B_iso_Wilson_estimate 34.172
_reflns.pdbx_redundancy 17.4
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 1.83
_reflns_shell.d_res_low 1.93
_reflns_shell.percent_possible_all 98.3
_reflns_shell.Rmerge_I_obs 0.57
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 8.90
_reflns_shell.pdbx_redundancy 17.9
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 2XC6
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 2068
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.00
_refine.ls_d_res_high 1.83
_refine.ls_percent_reflns_obs 99.55
_refine.ls_R_factor_obs 0.23697
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.23447
_refine.ls_R_factor_R_free 0.27060
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 7.0
_refine.ls_number_reflns_R_free 155
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.948
_refine.correlation_coeff_Fo_to_Fc_free 0.921
_refine.B_iso_mean 26.623
_refine.aniso_B[1][1] 1.03
_refine.aniso_B[2][2] 1.03
_refine.aniso_B[3][3] -2.05
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'BABINET MODEL WITH MASK'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details
;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. GNA DUPLEX OF TYPE N FORMED WITH SYMMETRY-EQUIVALENT MOLECULE, 3'TERMINAL CYTOSINE NUCLEOTIDE AND 5-BROMO ATOM AT U4 ONLY PARTIAL OCCUPANCY.
;
_refine.pdbx_starting_model NONE
_refine.pdbx_method_to_determine_struct MAD
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.147
_refine.pdbx_overall_ESU_R_Free 0.141
_refine.overall_SU_ML 0.066
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 4.649
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 137
_refine_hist.pdbx_number_atoms_ligand 2
_refine_hist.number_atoms_solvent 21
_refine_hist.number_atoms_total 160
_refine_hist.d_res_high 1.83
_refine_hist.d_res_low 8.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.011 0.021 ? 169 'X-RAY DIFFRACTION' ?
r_bond_other_d 0.002 0.020 ? 68 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.715 3.000 ? 213 'X-RAY DIFFRACTION' ?
r_angle_other_deg 0.631 3.000 ? 154 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.045 0.200 ? 8 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.007 0.020 ? 84 'X-RAY DIFFRACTION' ?
r_gen_planes_other 0.000 0.020 ? 28 'X-RAY DIFFRACTION' ?
r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_it 2.064 3.000 ? 148 'X-RAY DIFFRACTION' ?
r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_it 2.951 4.500 ? 206 'X-RAY DIFFRACTION' ?
r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.832
_refine_ls_shell.d_res_low 1.877
_refine_ls_shell.number_reflns_R_work 138
_refine_ls_shell.R_factor_R_work 0.268
_refine_ls_shell.percent_reflns_obs 96.75
_refine_ls_shell.R_factor_R_free 0.268
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 11
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_database_PDB_matrix.entry_id 2XC6
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 2XC6
_struct.title
;Crystal structure of the GNA 3'-CTC(Br)UAGAG-2'
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2XC6
_struct_keywords.pdbx_keywords RNA
_struct_keywords.text 'RNA, WATSON-CRICK BASE PAIR, GLYCOL NUCLEIC ACID'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 3 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 2XC6
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_db_accession 2XC6
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 2XC6
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 2XC6
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 15_554 y,x,-z-1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -28.9700000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale one ? A ZCY 1 O2G ? ? ? 1_555 A ZTH 2 P ? ? A ZCY 1 A ZTH 2 1_555 ? ? ? ? ? ? ? 1.596 ? ?
covale2 covale one ? A ZTH 2 O2G ? ? ? 1_555 A ZCY 3 P ? ? A ZTH 2 A ZCY 3 1_555 ? ? ? ? ? ? ? 1.580 ? ?
covale3 covale one ? A ZCY 3 O2G ? ? ? 1_555 A ZBU 4 P ? ? A ZCY 3 A ZBU 4 1_555 ? ? ? ? ? ? ? 1.585 ? ?
covale4 covale one ? A ZBU 4 O2G ? ? ? 1_555 A ZAD 5 P ? ? A ZBU 4 A ZAD 5 1_555 ? ? ? ? ? ? ? 1.602 ? ?
covale5 covale one ? A ZAD 5 O2G ? ? ? 1_555 A ZGU 6 P ? ? A ZAD 5 A ZGU 6 1_555 ? ? ? ? ? ? ? 1.598 ? ?
covale6 covale one ? A ZGU 6 O2G ? ? ? 1_555 A ZAD 7 P ? ? A ZGU 6 A ZAD 7 1_555 ? ? ? ? ? ? ? 1.584 ? ?
covale7 covale one ? A ZAD 7 O2G ? ? ? 1_555 A ZGU 8 P ? ? A ZAD 7 A ZGU 8 1_555 ? ? ? ? ? ? ? 1.598 ? ?
hydrog1 hydrog ? ? A ZCY 1 N3 ? ? ? 1_555 A ZGU 8 N1 ? ? A ZCY 1 A ZGU 8 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A ZCY 1 N4 ? ? ? 1_555 A ZGU 8 O6 ? ? A ZCY 1 A ZGU 8 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A ZCY 1 O2 ? ? ? 1_555 A ZGU 8 N2 ? ? A ZCY 1 A ZGU 8 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A ZTH 2 N3 ? ? ? 1_555 A ZAD 7 N1 ? ? A ZTH 2 A ZAD 7 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A ZTH 2 O4 ? ? ? 1_555 A ZAD 7 N6 ? ? A ZTH 2 A ZAD 7 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A ZCY 3 N3 ? ? ? 1_555 A ZGU 6 N1 ? ? A ZCY 3 A ZGU 6 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A ZCY 3 N4 ? ? ? 1_555 A ZGU 6 O6 ? ? A ZCY 3 A ZGU 6 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A ZCY 3 O2 ? ? ? 1_555 A ZGU 6 N2 ? ? A ZCY 3 A ZGU 6 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A ZBU 4 N3 ? ? ? 1_555 A ZAD 5 N1 ? ? A ZBU 4 A ZAD 5 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A ZBU 4 O4 ? ? ? 1_555 A ZAD 5 N6 ? ? A ZBU 4 A ZAD 5 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A ZAD 5 N1 ? ? ? 1_555 A ZBU 4 N3 ? ? A ZAD 5 A ZBU 4 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A ZAD 5 N6 ? ? ? 1_555 A ZBU 4 O4 ? ? A ZAD 5 A ZBU 4 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A ZGU 6 N1 ? ? ? 1_555 A ZCY 3 N3 ? ? A ZGU 6 A ZCY 3 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A ZGU 6 N2 ? ? ? 1_555 A ZCY 3 O2 ? ? A ZGU 6 A ZCY 3 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A ZGU 6 O6 ? ? ? 1_555 A ZCY 3 N4 ? ? A ZGU 6 A ZCY 3 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A ZAD 7 N1 ? ? ? 1_555 A ZTH 2 N3 ? ? A ZAD 7 A ZTH 2 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A ZAD 7 N6 ? ? ? 1_555 A ZTH 2 O4 ? ? A ZAD 7 A ZTH 2 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A ZGU 8 N1 ? ? ? 1_555 A ZCY 1 N3 ? ? A ZGU 8 A ZCY 1 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A ZGU 8 N2 ? ? ? 1_555 A ZCY 1 O2 ? ? A ZGU 8 A ZCY 1 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A ZGU 8 O6 ? ? ? 1_555 A ZCY 1 N4 ? ? A ZGU 8 A ZCY 1 15_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id NA
_struct_site.pdbx_auth_seq_id 1002
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 2
_struct_site.details 'BINDING SITE FOR RESIDUE NA A 1002'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 2 ZBU A 4 ? ZBU A 4 . ? 6_554 ?
2 AC1 2 ZBU A 4 ? ZBU A 4 . ? 1_555 ?
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A ZCY 1 A ZCY 1 ? C "(S)-1'-(2',3'-DIHYDROXYPROPYL)-CYTOSINE"
2 A ZTH 2 A ZTH 2 ? T "(S)-1'-(2',3'-DIHYDROXYPROPYL)-THYMINE"
3 A ZCY 3 A ZCY 3 ? C "(S)-1'-(2',3'-DIHYDROXYPROPYL)-CYTOSINE"
4 A ZBU 4 A ZBU 4 ? U ?
5 A ZAD 5 A ZAD 5 ? A "(S)-1'-(2',3'-DIHYDROXYPROPYL)-ADENINE"
6 A ZGU 6 A ZGU 6 ? G "(S)-1'-(2',3'-DIHYDROXYPROPYL)-GUANINE"
7 A ZAD 7 A ZAD 7 ? A "(S)-1'-(2',3'-DIHYDROXYPROPYL)-ADENINE"
8 A ZGU 8 A ZGU 8 ? G "(S)-1'-(2',3'-DIHYDROXYPROPYL)-GUANINE"
#
_pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls.id 1
_pdbx_refine_tls.details ?
_pdbx_refine_tls.method refined
_pdbx_refine_tls.origin_x 5.0237
_pdbx_refine_tls.origin_y 6.2082
_pdbx_refine_tls.origin_z -12.2048
_pdbx_refine_tls.T[1][1] 0.0841
_pdbx_refine_tls.T[2][2] 0.1045
_pdbx_refine_tls.T[3][3] 0.0904
_pdbx_refine_tls.T[1][2] -0.0770
_pdbx_refine_tls.T[1][3] 0.0458
_pdbx_refine_tls.T[2][3] -0.0241
_pdbx_refine_tls.L[1][1] 2.0610
_pdbx_refine_tls.L[2][2] 1.8936
_pdbx_refine_tls.L[3][3] 4.7135
_pdbx_refine_tls.L[1][2] 0.4823
_pdbx_refine_tls.L[1][3] 2.3312
_pdbx_refine_tls.L[2][3] -0.6942
_pdbx_refine_tls.S[1][1] 0.0440
_pdbx_refine_tls.S[1][2] -0.3067
_pdbx_refine_tls.S[1][3] 0.0550
_pdbx_refine_tls.S[2][1] -0.1721
_pdbx_refine_tls.S[2][2] 0.0186
_pdbx_refine_tls.S[2][3] -0.0678
_pdbx_refine_tls.S[3][1] -0.7083
_pdbx_refine_tls.S[3][2] 0.6294
_pdbx_refine_tls.S[3][3] -0.0626
#
_pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls_group.id 1
_pdbx_refine_tls_group.refine_tls_id 1
_pdbx_refine_tls_group.beg_auth_asym_id A
_pdbx_refine_tls_group.beg_auth_seq_id 1
_pdbx_refine_tls_group.beg_label_asym_id ?
_pdbx_refine_tls_group.beg_label_seq_id ?
_pdbx_refine_tls_group.end_auth_asym_id A
_pdbx_refine_tls_group.end_auth_seq_id 8
_pdbx_refine_tls_group.end_label_asym_id ?
_pdbx_refine_tls_group.end_label_seq_id ?
_pdbx_refine_tls_group.selection ?
_pdbx_refine_tls_group.selection_details ?
#
_pdbx_entry_details.entry_id 2XC6
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details
;URACIL U4 IS BROMINATED AT C5 FOR MAD ANALYSIS AT BROMINE
EDGE
;
_pdbx_entry_details.has_ligand_of_interest ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
HOH O O N N 1
HOH H1 H N N 2
HOH H2 H N N 3
NA NA NA N N 4
ZAD O2P O N N 5
ZAD P P N N 6
ZAD O1P O N N 7
ZAD O3G O N N 8
ZAD C3G C N N 9
ZAD C2G C N S 10
ZAD O2G O N N 11
ZAD C1G C N N 12
ZAD N9 N Y N 13
ZAD C4 C Y N 14
ZAD N3 N Y N 15
ZAD C2 C Y N 16
ZAD N1 N Y N 17
ZAD C6 C Y N 18
ZAD N6 N N N 19
ZAD C5 C Y N 20
ZAD N7 N Y N 21
ZAD C8 C Y N 22
ZAD OXT O N N 23
ZAD H2P H N N 24
ZAD HOT H N N 25
ZAD H3G1 H N N 26
ZAD H3G2 H N N 27
ZAD H2G H N N 28
ZAD HA H N N 29
ZAD H1G1 H N N 30
ZAD H1G2 H N N 31
ZAD H8 H N N 32
ZAD H2 H N N 33
ZAD H6N1 H N N 34
ZAD H6N2 H N N 35
ZBU O1P O N N 36
ZBU P P N N 37
ZBU O2P O N N 38
ZBU O3G O N N 39
ZBU C3G C N N 40
ZBU C2G C N S 41
ZBU O2G O N N 42
ZBU C1G C N N 43
ZBU N1 N N N 44
ZBU C2 C N N 45
ZBU O2 O N N 46
ZBU N3 N N N 47
ZBU C6 C N N 48
ZBU C5 C N N 49
ZBU BR5 BR N N 50
ZBU C4 C N N 51
ZBU O4 O N N 52
ZBU O3P O N N 53
ZBU H1P H N N 54
ZBU H3P H N N 55
ZBU H3G1 H N N 56
ZBU H3G2 H N N 57
ZBU H2G H N N 58
ZBU HA H N N 59
ZBU H1G1 H N N 60
ZBU H1G2 H N N 61
ZBU H6 H N N 62
ZBU H3 H N N 63
ZCY O2 O N N 64
ZCY C2 C N N 65
ZCY N3 N N N 66
ZCY C4 C N N 67
ZCY N4 N N N 68
ZCY C5 C N N 69
ZCY C6 C N N 70
ZCY N1 N N N 71
ZCY C1G C N N 72
ZCY C2G C N S 73
ZCY O2G O N N 74
ZCY C3G C N N 75
ZCY O3G O N N 76
ZCY P P N N 77
ZCY O2P O N N 78
ZCY O1P O N N 79
ZCY OXT O N N 80
ZCY H4N1 H N N 81
ZCY H4N2 H N N 82
ZCY H5 H N N 83
ZCY H6 H N N 84
ZCY H1G1 H N N 85
ZCY H1G2 H N N 86
ZCY H2G H N N 87
ZCY H3G1 H N N 88
ZCY H3G2 H N N 89
ZCY H2P H N N 90
ZCY H2 H N N 91
ZCY HXT H N N 92
ZGU P P N N 93
ZGU O1P O N N 94
ZGU O2P O N N 95
ZGU O3G O N N 96
ZGU C3G C N N 97
ZGU C2G C N S 98
ZGU O2G O N N 99
ZGU C1G C N N 100
ZGU N9 N Y N 101
ZGU C8 C Y N 102
ZGU N7 N Y N 103
ZGU C4 C Y N 104
ZGU C5 C Y N 105
ZGU N3 N N N 106
ZGU C2 C N N 107
ZGU N2 N N N 108
ZGU N1 N N N 109
ZGU C6 C N N 110
ZGU O6 O N N 111
ZGU OXT O N N 112
ZGU H1P H N N 113
ZGU HOT H N N 114
ZGU H3G1 H N N 115
ZGU H3G2 H N N 116
ZGU H2G H N N 117
ZGU HA H N N 118
ZGU H1G1 H N N 119
ZGU H1G2 H N N 120
ZGU H8 H N N 121
ZGU H2N1 H N N 122
ZGU H2N2 H N N 123
ZGU H1 H N N 124
ZTH O4 O N N 125
ZTH C4 C N N 126
ZTH N3 N N N 127
ZTH C2 C N N 128
ZTH O2 O N N 129
ZTH C5 C N N 130
ZTH C5M C N N 131
ZTH C6 C N N 132
ZTH N1 N N N 133
ZTH C1G C N N 134
ZTH C2G C N S 135
ZTH O2G O N N 136
ZTH C3G C N N 137
ZTH O3G O N N 138
ZTH P P N N 139
ZTH O1P O N N 140
ZTH O2P O N N 141
ZTH H3 H N N 142
ZTH H5M1 H N N 143
ZTH H5M2 H N N 144
ZTH H5M3 H N N 145
ZTH H6 H N N 146
ZTH H1G1 H N N 147
ZTH H1G2 H N N 148
ZTH H2G H N N 149
ZTH H3G1 H N N 150
ZTH H3G2 H N N 151
ZTH H1P H N N 152
ZTH OXT O N N 153
ZTH HXT H N N 154
ZTH H2 H N N 155
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HOH O H1 sing N N 1
HOH O H2 sing N N 2
ZAD O2P P sing N N 3
ZAD P O1P doub N N 4
ZAD P O3G sing N N 5
ZAD P OXT sing N N 6
ZAD O3G C3G sing N N 7
ZAD C3G C2G sing N N 8
ZAD C2G O2G sing N N 9
ZAD C2G C1G sing N N 10
ZAD C1G N9 sing N N 11
ZAD N9 C4 sing Y N 12
ZAD N9 C8 sing Y N 13
ZAD C4 N3 sing Y N 14
ZAD C4 C5 doub Y N 15
ZAD N3 C2 doub Y N 16
ZAD C2 N1 sing Y N 17
ZAD N1 C6 doub Y N 18
ZAD C6 N6 sing N N 19
ZAD C6 C5 sing Y N 20
ZAD C5 N7 sing Y N 21
ZAD N7 C8 doub Y N 22
ZAD O2P H2P sing N N 23
ZAD OXT HOT sing N N 24
ZAD C3G H3G1 sing N N 25
ZAD C3G H3G2 sing N N 26
ZAD C2G H2G sing N N 27
ZAD O2G HA sing N N 28
ZAD C1G H1G1 sing N N 29
ZAD C1G H1G2 sing N N 30
ZAD C8 H8 sing N N 31
ZAD C2 H2 sing N N 32
ZAD N6 H6N1 sing N N 33
ZAD N6 H6N2 sing N N 34
ZBU O1P P sing N N 35
ZBU P O2P doub N N 36
ZBU P O3G sing N N 37
ZBU P O3P sing N N 38
ZBU O3G C3G sing N N 39
ZBU C3G C2G sing N N 40
ZBU C2G O2G sing N N 41
ZBU C2G C1G sing N N 42
ZBU C1G N1 sing N N 43
ZBU N1 C2 sing N N 44
ZBU N1 C6 sing N N 45
ZBU C2 O2 doub N N 46
ZBU C2 N3 sing N N 47
ZBU N3 C4 sing N N 48
ZBU C6 C5 doub N N 49
ZBU C5 BR5 sing N N 50
ZBU C5 C4 sing N N 51
ZBU C4 O4 doub N N 52
ZBU O1P H1P sing N N 53
ZBU O3P H3P sing N N 54
ZBU C3G H3G1 sing N N 55
ZBU C3G H3G2 sing N N 56
ZBU C2G H2G sing N N 57
ZBU O2G HA sing N N 58
ZBU C1G H1G1 sing N N 59
ZBU C1G H1G2 sing N N 60
ZBU C6 H6 sing N N 61
ZBU N3 H3 sing N N 62
ZCY O2 C2 doub N N 63
ZCY C2 N3 sing N N 64
ZCY C2 N1 sing N N 65
ZCY N3 C4 doub N N 66
ZCY C4 N4 sing N N 67
ZCY C4 C5 sing N N 68
ZCY C5 C6 doub N N 69
ZCY C6 N1 sing N N 70
ZCY N1 C1G sing N N 71
ZCY C1G C2G sing N N 72
ZCY C2G O2G sing N N 73
ZCY C2G C3G sing N N 74
ZCY O2G H2G sing N N 75
ZCY C3G O3G sing N N 76
ZCY O3G P sing N N 77
ZCY P O2P sing N N 78
ZCY P O1P doub N N 79
ZCY N4 H4N1 sing N N 80
ZCY N4 H4N2 sing N N 81
ZCY C5 H5 sing N N 82
ZCY C6 H6 sing N N 83
ZCY C1G H1G1 sing N N 84
ZCY C1G H1G2 sing N N 85
ZCY C2G H2 sing N N 86
ZCY C3G H3G1 sing N N 87
ZCY C3G H3G2 sing N N 88
ZCY O2P H2P sing N N 89
ZCY P OXT sing N N 90
ZCY OXT HXT sing N N 91
ZGU P O1P sing N N 92
ZGU P O2P doub N N 93
ZGU P O3G sing N N 94
ZGU P OXT sing N N 95
ZGU O3G C3G sing N N 96
ZGU C3G C2G sing N N 97
ZGU C2G O2G sing N N 98
ZGU C2G C1G sing N N 99
ZGU C1G N9 sing N N 100
ZGU N9 C8 sing Y N 101
ZGU N9 C4 sing Y N 102
ZGU C8 N7 doub Y N 103
ZGU N7 C5 sing Y N 104
ZGU C4 C5 doub Y N 105
ZGU C4 N3 sing N N 106
ZGU C5 C6 sing N N 107
ZGU N3 C2 doub N N 108
ZGU C2 N2 sing N N 109
ZGU C2 N1 sing N N 110
ZGU N1 C6 sing N N 111
ZGU C6 O6 doub N N 112
ZGU O1P H1P sing N N 113
ZGU OXT HOT sing N N 114
ZGU C3G H3G1 sing N N 115
ZGU C3G H3G2 sing N N 116
ZGU C2G H2G sing N N 117
ZGU O2G HA sing N N 118
ZGU C1G H1G1 sing N N 119
ZGU C1G H1G2 sing N N 120
ZGU C8 H8 sing N N 121
ZGU N2 H2N1 sing N N 122
ZGU N2 H2N2 sing N N 123
ZGU N1 H1 sing N N 124
ZTH O4 C4 doub N N 125
ZTH C4 N3 sing N N 126
ZTH C4 C5 sing N N 127
ZTH N3 C2 sing N N 128
ZTH C2 O2 doub N N 129
ZTH C2 N1 sing N N 130
ZTH C5 C5M sing N N 131
ZTH C5 C6 doub N N 132
ZTH C6 N1 sing N N 133
ZTH N1 C1G sing N N 134
ZTH C1G C2G sing N N 135
ZTH C2G O2G sing N N 136
ZTH C2G C3G sing N N 137
ZTH P OXT sing N N 138
ZTH C3G O3G sing N N 139
ZTH O3G P sing N N 140
ZTH P O1P sing N N 141
ZTH P O2P doub N N 142
ZTH N3 H3 sing N N 143
ZTH C5M H5M1 sing N N 144
ZTH C5M H5M2 sing N N 145
ZTH C5M H5M3 sing N N 146
ZTH C6 H6 sing N N 147
ZTH C1G H1G1 sing N N 148
ZTH C1G H1G2 sing N N 149
ZTH C2G H2G sing N N 150
ZTH C3G H3G1 sing N N 151
ZTH C3G H3G2 sing N N 152
ZTH O1P H1P sing N N 153
ZTH OXT HXT sing N N 154
ZTH O2G H2 sing N N 155
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
2XC6 'double helix'
2XC6 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A ZCY 1 1_555 A ZGU 8 15_554 -0.289 -0.007 -0.126 -1.062 -6.768 1.232 1 A_ZCY1:ZGU8_A A 1 ? A 8 ? 19 1
1 A ZTH 2 1_555 A ZAD 7 15_554 0.109 -0.146 -0.013 1.804 2.748 2.183 2 A_ZTH2:ZAD7_A A 2 ? A 7 ? 20 1
1 A ZCY 3 1_555 A ZGU 6 15_554 -0.395 -0.197 0.110 -6.380 -3.722 2.036 3 A_ZCY3:ZGU6_A A 3 ? A 6 ? 19 1
1 A ZBU 4 1_555 A ZAD 5 15_554 0.094 -0.196 0.102 -0.910 -3.976 -2.023 4 A_ZBU4:ZAD5_A A 4 ? A 5 ? 20 1
1 A ZAD 5 1_555 A ZBU 4 15_554 -0.094 -0.196 0.102 0.910 -3.976 -2.023 5 A_ZAD5:ZBU4_A A 5 ? A 4 ? 20 1
1 A ZGU 6 1_555 A ZCY 3 15_554 0.395 -0.197 0.110 6.380 -3.722 2.036 6 A_ZGU6:ZCY3_A A 6 ? A 3 ? 19 1
1 A ZAD 7 1_555 A ZTH 2 15_554 -0.109 -0.146 -0.013 -1.804 2.748 2.183 7 A_ZAD7:ZTH2_A A 7 ? A 2 ? 20 1
1 A ZGU 8 1_555 A ZCY 1 15_554 0.289 -0.007 -0.126 1.062 -6.768 1.232 8 A_ZGU8:ZCY1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A ZCY 1 1_555 A ZGU 8 15_554 A ZTH 2 1_555 A ZAD 7 15_554 -0.142 -3.317 3.223 0.203 1.673 47.314 -4.263 0.193 3.111 2.083
-0.253 47.343 1 AA_ZCY1ZTH2:ZAD7ZGU8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A ZTH 2 1_555 A ZAD 7 15_554 A ZCY 3 1_555 A ZGU 6 15_554 0.103 -4.416 3.491 -0.941 0.872 22.915 -11.420 -0.605 3.316 2.194
2.367 22.950 2 AA_ZTH2ZCY3:ZGU6ZAD7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A ZCY 3 1_555 A ZGU 6 15_554 A ZBU 4 1_555 A ZAD 5 15_554 0.042 -3.157 3.072 -0.195 3.999 46.119 -4.322 -0.068 2.804 5.093
0.248 46.283 3 AA_ZCY3ZBU4:ZAD5ZGU6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A ZBU 4 1_555 A ZAD 5 15_554 A ZAD 5 1_555 A ZBU 4 15_554 0.000 -4.124 3.216 0.000 6.601 26.451 -10.126 0.000 2.142 14.148
0.000 27.248 4 AA_ZBU4ZAD5:ZBU4ZAD5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A ZAD 5 1_555 A ZBU 4 15_554 A ZGU 6 1_555 A ZCY 3 15_554 -0.042 -3.157 3.072 0.195 3.999 46.119 -4.322 0.068 2.804 5.093
-0.248 46.283 5 AA_ZAD5ZGU6:ZCY3ZBU4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A ZGU 6 1_555 A ZCY 3 15_554 A ZAD 7 1_555 A ZTH 2 15_554 -0.103 -4.416 3.491 0.941 0.872 22.915 -11.420 0.605 3.316 2.194
-2.367 22.950 6 AA_ZGU6ZAD7:ZTH2ZCY3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A ZAD 7 1_555 A ZTH 2 15_554 A ZGU 8 1_555 A ZCY 1 15_554 0.142 -3.317 3.223 -0.203 1.673 47.314 -4.263 -0.193 3.111 2.083
0.253 47.343 7 AA_ZAD7ZGU8:ZCY1ZTH2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_atom_sites.entry_id 2XC6
_atom_sites.fract_transf_matrix[1][1] 0.017565
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.017565
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.034518
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
BR
C
N
NA
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 . ZCY A 1 1 ? 7.581 11.893 -23.952 0.70 36.08 ? 1 ZCY A O2 1
HETATM 2 C C2 . ZCY A 1 1 ? 7.970 13.075 -23.822 0.70 36.53 ? 1 ZCY A C2 1
HETATM 3 N N3 . ZCY A 1 1 ? 7.084 14.094 -23.709 0.70 35.72 ? 1 ZCY A N3 1
HETATM 4 C C4 . ZCY A 1 1 ? 7.475 15.357 -23.565 0.70 34.67 ? 1 ZCY A C4 1
HETATM 5 N N4 . ZCY A 1 1 ? 6.520 16.287 -23.462 0.70 33.49 ? 1 ZCY A N4 1
HETATM 6 C C5 . ZCY A 1 1 ? 8.862 15.706 -23.524 0.70 36.44 ? 1 ZCY A C5 1
HETATM 7 C C6 . ZCY A 1 1 ? 9.745 14.702 -23.641 0.70 36.70 ? 1 ZCY A C6 1
HETATM 8 N N1 . ZCY A 1 1 ? 9.332 13.398 -23.791 0.70 36.99 ? 1 ZCY A N1 1
HETATM 9 C C1G . ZCY A 1 1 ? 10.364 12.338 -23.897 0.70 38.91 ? 1 ZCY A C1G 1
HETATM 10 C C2G . ZCY A 1 1 ? 10.757 11.867 -22.502 0.70 40.75 ? 1 ZCY A C2G 1
HETATM 11 O O2G . ZCY A 1 1 ? 11.447 12.941 -21.833 0.70 41.90 ? 1 ZCY A O2G 1
HETATM 12 C C3G . ZCY A 1 1 ? 11.621 10.606 -22.577 0.70 41.26 ? 1 ZCY A C3G 1
HETATM 13 O O3G . ZCY A 1 1 ? 12.789 10.845 -23.365 0.70 41.52 ? 1 ZCY A O3G 1
HETATM 14 O O4 . ZTH A 1 2 ? 1.443 14.835 -20.103 1.00 32.99 ? 2 ZTH A O4 1
HETATM 15 C C4 . ZTH A 1 2 ? 2.673 14.853 -20.127 1.00 33.75 ? 2 ZTH A C4 1
HETATM 16 N N3 . ZTH A 1 2 ? 3.417 13.713 -20.400 1.00 31.96 ? 2 ZTH A N3 1
HETATM 17 C C2 . ZTH A 1 2 ? 4.780 13.595 -20.455 1.00 32.95 ? 2 ZTH A C2 1
HETATM 18 O O2 . ZTH A 1 2 ? 5.327 12.536 -20.697 1.00 32.96 ? 2 ZTH A O2 1
HETATM 19 C C5 . ZTH A 1 2 ? 3.453 16.036 -19.861 1.00 34.65 ? 2 ZTH A C5 1
HETATM 20 C C5M . ZTH A 1 2 ? 2.788 17.347 -19.557 1.00 37.76 ? 2 ZTH A C5M 1
HETATM 21 C C6 . ZTH A 1 2 ? 4.792 15.942 -19.913 1.00 35.18 ? 2 ZTH A C6 1
HETATM 22 N N1 . ZTH A 1 2 ? 5.468 14.766 -20.187 1.00 34.85 ? 2 ZTH A N1 1
HETATM 23 C C1G . ZTH A 1 2 ? 6.957 14.771 -20.229 1.00 37.60 ? 2 ZTH A C1G 1
HETATM 24 C C2G . ZTH A 1 2 ? 7.643 14.274 -18.969 1.00 39.16 ? 2 ZTH A C2G 1
HETATM 25 O O2G . ZTH A 1 2 ? 7.214 15.100 -17.879 1.00 38.66 ? 2 ZTH A O2G 1
HETATM 26 C C3G . ZTH A 1 2 ? 9.160 14.381 -19.147 1.00 41.31 ? 2 ZTH A C3G 1
HETATM 27 O O3G . ZTH A 1 2 ? 9.642 13.435 -20.119 1.00 43.38 ? 2 ZTH A O3G 1
HETATM 28 P P . ZTH A 1 2 ? 11.227 13.236 -20.280 1.00 45.41 ? 2 ZTH A P 1
HETATM 29 O O1P . ZTH A 1 2 ? 11.956 14.305 -19.518 0.50 41.98 ? 2 ZTH A O1P 1
HETATM 30 O O2P . ZTH A 1 2 ? 10.963 11.941 -19.560 0.50 42.17 ? 2 ZTH A O2P 1
HETATM 31 O O2 . ZCY A 1 3 ? 2.905 9.435 -17.774 1.00 26.09 ? 3 ZCY A O2 1
HETATM 32 C C2 . ZCY A 1 3 ? 1.887 10.125 -17.690 1.00 26.81 ? 3 ZCY A C2 1
HETATM 33 N N3 . ZCY A 1 3 ? 0.635 9.615 -17.742 1.00 27.03 ? 3 ZCY A N3 1
HETATM 34 C C4 . ZCY A 1 3 ? -0.442 10.400 -17.624 1.00 29.21 ? 3 ZCY A C4 1
HETATM 35 N N4 . ZCY A 1 3 ? -1.660 9.843 -17.684 1.00 29.83 ? 3 ZCY A N4 1
HETATM 36 C C5 . ZCY A 1 3 ? -0.299 11.796 -17.447 1.00 29.41 ? 3 ZCY A C5 1
HETATM 37 C C6 . ZCY A 1 3 ? 0.944 12.303 -17.392 1.00 28.43 ? 3 ZCY A C6 1
HETATM 38 N N1 . ZCY A 1 3 ? 2.046 11.498 -17.509 1.00 26.74 ? 3 ZCY A N1 1
HETATM 39 C C1G . ZCY A 1 3 ? 3.409 12.074 -17.457 1.00 27.57 ? 3 ZCY A C1G 1
HETATM 40 C C2G . ZCY A 1 3 ? 3.987 12.050 -16.056 1.00 30.02 ? 3 ZCY A C2G 1
HETATM 41 O O2G . ZCY A 1 3 ? 3.216 12.987 -15.304 1.00 29.37 ? 3 ZCY A O2G 1
HETATM 42 C C3G . ZCY A 1 3 ? 5.471 12.400 -16.081 1.00 34.51 ? 3 ZCY A C3G 1
HETATM 43 O O3G . ZCY A 1 3 ? 5.661 13.689 -16.649 1.00 34.99 ? 3 ZCY A O3G 1
HETATM 44 P P . ZCY A 1 3 ? 7.043 14.469 -16.441 1.00 38.28 ? 3 ZCY A P 1
HETATM 45 O O2P . ZCY A 1 3 ? 6.848 15.592 -15.466 1.00 40.66 ? 3 ZCY A O2P 1
HETATM 46 O O1P . ZCY A 1 3 ? 8.115 13.432 -16.225 1.00 39.70 ? 3 ZCY A O1P 1
HETATM 47 O O1P . ZBU A 1 4 ? 2.267 13.914 -13.020 1.00 37.66 ? 4 ZBU A O1P 1
HETATM 48 P P . ZBU A 1 4 ? 2.993 12.812 -13.745 1.00 37.23 ? 4 ZBU A P 1
HETATM 49 O O2P . ZBU A 1 4 ? 4.225 12.224 -13.113 1.00 38.02 ? 4 ZBU A O2P 1
HETATM 50 O O3G . ZBU A 1 4 ? 2.104 11.498 -13.762 1.00 32.88 ? 4 ZBU A O3G 1
HETATM 51 C C3G . ZBU A 1 4 ? 0.937 11.406 -12.976 1.00 32.67 ? 4 ZBU A C3G 1
HETATM 52 C C2G . ZBU A 1 4 ? 0.453 9.965 -13.040 1.00 30.32 ? 4 ZBU A C2G 1
HETATM 53 O O2G . ZBU A 1 4 ? -0.660 9.815 -12.169 1.00 32.12 ? 4 ZBU A O2G 1
HETATM 54 C C1G . ZBU A 1 4 ? 0.040 9.654 -14.478 1.00 29.77 ? 4 ZBU A C1G 1
HETATM 55 N N1 . ZBU A 1 4 ? -0.478 8.244 -14.685 1.00 29.17 ? 4 ZBU A N1 1
HETATM 56 C C2 . ZBU A 1 4 ? 0.345 7.186 -14.969 1.00 28.21 ? 4 ZBU A C2 1
HETATM 57 O O2 . ZBU A 1 4 ? 1.531 7.238 -15.018 1.00 26.22 ? 4 ZBU A O2 1
HETATM 58 N N3 . ZBU A 1 4 ? -0.289 5.968 -15.149 1.00 29.51 ? 4 ZBU A N3 1
HETATM 59 C C6 . ZBU A 1 4 ? -1.821 8.079 -14.653 1.00 32.68 ? 4 ZBU A C6 1
HETATM 60 C C5 . ZBU A 1 4 ? -2.404 6.904 -14.838 1.00 34.26 ? 4 ZBU A C5 1
HETATM 61 BR BR5 . ZBU A 1 4 ? -4.253 6.823 -14.723 0.60 40.71 ? 4 ZBU A BR5 1
HETATM 62 C C4 . ZBU A 1 4 ? -1.628 5.734 -15.106 1.00 31.10 ? 4 ZBU A C4 1
HETATM 63 O O4 . ZBU A 1 4 ? -2.077 4.609 -15.297 1.00 33.19 ? 4 ZBU A O4 1
HETATM 64 O O2P . ZAD A 1 5 ? -1.723 9.693 -10.228 1.00 41.85 ? 5 ZAD A O2P 1
HETATM 65 P P . ZAD A 1 5 ? -0.331 9.346 -10.673 1.00 37.53 ? 5 ZAD A P 1
HETATM 66 O O1P . ZAD A 1 5 ? 0.844 10.096 -10.107 1.00 35.50 ? 5 ZAD A O1P 1
HETATM 67 O O3G . ZAD A 1 5 ? -0.122 7.805 -11.003 1.00 34.88 ? 5 ZAD A O3G 1
HETATM 68 C C3G . ZAD A 1 5 ? 1.047 7.179 -10.456 1.00 33.54 ? 5 ZAD A C3G 1
HETATM 69 C C2G . ZAD A 1 5 ? 0.936 5.669 -10.630 1.00 29.74 ? 5 ZAD A C2G 1
HETATM 70 O O2G . ZAD A 1 5 ? -0.275 5.225 -9.999 1.00 28.86 ? 5 ZAD A O2G 1
HETATM 71 C C1G . ZAD A 1 5 ? 0.857 5.313 -12.106 1.00 28.49 ? 5 ZAD A C1G 1
HETATM 72 N N9 . ZAD A 1 5 ? 0.938 3.887 -12.307 1.00 26.60 ? 5 ZAD A N9 1
HETATM 73 C C4 . ZAD A 1 5 ? 2.044 3.165 -12.603 1.00 25.62 ? 5 ZAD A C4 1
HETATM 74 N N3 . ZAD A 1 5 ? 3.306 3.632 -12.742 1.00 24.79 ? 5 ZAD A N3 1
HETATM 75 C C2 . ZAD A 1 5 ? 4.122 2.616 -13.031 1.00 23.38 ? 5 ZAD A C2 1
HETATM 76 N N1 . ZAD A 1 5 ? 3.862 1.305 -13.158 1.00 25.17 ? 5 ZAD A N1 1
HETATM 77 C C6 . ZAD A 1 5 ? 2.564 0.908 -12.981 1.00 25.13 ? 5 ZAD A C6 1
HETATM 78 N N6 . ZAD A 1 5 ? 2.238 -0.364 -13.095 1.00 24.55 ? 5 ZAD A N6 1
HETATM 79 C C5 . ZAD A 1 5 ? 1.601 1.883 -12.694 1.00 24.78 ? 5 ZAD A C5 1
HETATM 80 N N7 . ZAD A 1 5 ? 0.224 1.785 -12.466 1.00 24.65 ? 5 ZAD A N7 1
HETATM 81 C C8 . ZAD A 1 5 ? -0.109 3.013 -12.262 1.00 26.53 ? 5 ZAD A C8 1
HETATM 82 P P . ZGU A 1 6 ? -0.288 4.607 -8.525 1.00 29.08 ? 6 ZGU A P 1
HETATM 83 O O1P . ZGU A 1 6 ? -1.720 4.239 -8.280 1.00 28.50 ? 6 ZGU A O1P 1
HETATM 84 O O2P . ZGU A 1 6 ? 0.314 5.529 -7.525 1.00 28.19 ? 6 ZGU A O2P 1
HETATM 85 O O3G . ZGU A 1 6 ? 0.437 3.193 -8.732 1.00 24.67 ? 6 ZGU A O3G 1
HETATM 86 C C3G . ZGU A 1 6 ? 0.644 2.304 -7.650 1.00 21.46 ? 6 ZGU A C3G 1
HETATM 87 C C2G . ZGU A 1 6 ? 1.903 1.473 -7.924 1.00 22.46 ? 6 ZGU A C2G 1
HETATM 88 O O2G . ZGU A 1 6 ? 1.874 0.330 -7.095 1.00 22.54 ? 6 ZGU A O2G 1
HETATM 89 C C1G . ZGU A 1 6 ? 1.930 1.018 -9.379 1.00 24.47 ? 6 ZGU A C1G 1
HETATM 90 N N9 . ZGU A 1 6 ? 2.991 0.074 -9.671 1.00 25.79 ? 6 ZGU A N9 1
HETATM 91 C C8 . ZGU A 1 6 ? 2.944 -1.299 -9.733 1.00 24.41 ? 6 ZGU A C8 1
HETATM 92 N N7 . ZGU A 1 6 ? 4.087 -1.846 -10.025 1.00 25.59 ? 6 ZGU A N7 1
HETATM 93 C C4 . ZGU A 1 6 ? 4.267 0.432 -9.982 1.00 23.20 ? 6 ZGU A C4 1
HETATM 94 C C5 . ZGU A 1 6 ? 4.923 -0.754 -10.196 1.00 23.46 ? 6 ZGU A C5 1
HETATM 95 N N3 . ZGU A 1 6 ? 4.738 1.691 -10.022 1.00 22.06 ? 6 ZGU A N3 1
HETATM 96 C C2 . ZGU A 1 6 ? 6.004 1.737 -10.388 1.00 24.92 ? 6 ZGU A C2 1
HETATM 97 N N2 . ZGU A 1 6 ? 6.651 2.925 -10.488 1.00 24.04 ? 6 ZGU A N2 1
HETATM 98 N N1 . ZGU A 1 6 ? 6.748 0.599 -10.627 1.00 21.84 ? 6 ZGU A N1 1
HETATM 99 C C6 . ZGU A 1 6 ? 6.275 -0.713 -10.558 1.00 24.73 ? 6 ZGU A C6 1
HETATM 100 O O6 . ZGU A 1 6 ? 7.029 -1.669 -10.777 1.00 25.77 ? 6 ZGU A O6 1
HETATM 101 O O2P . ZAD A 1 7 ? 2.362 -1.019 -5.125 1.00 24.44 ? 7 ZAD A O2P 1
HETATM 102 P P . ZAD A 1 7 ? 2.633 0.336 -5.705 1.00 22.85 ? 7 ZAD A P 1
HETATM 103 O O1P . ZAD A 1 7 ? 2.144 1.521 -4.903 1.00 23.28 ? 7 ZAD A O1P 1
HETATM 104 O O3G . ZAD A 1 7 ? 4.130 0.464 -6.232 1.00 23.19 ? 7 ZAD A O3G 1
HETATM 105 C C3G . ZAD A 1 7 ? 5.130 1.033 -5.382 1.00 25.38 ? 7 ZAD A C3G 1
HETATM 106 C C2G . ZAD A 1 7 ? 6.471 0.417 -5.738 1.00 22.89 ? 7 ZAD A C2G 1
HETATM 107 O O2G . ZAD A 1 7 ? 6.501 -0.900 -5.239 1.00 27.49 ? 7 ZAD A O2G 1
HETATM 108 C C1G . ZAD A 1 7 ? 6.624 0.325 -7.253 1.00 23.49 ? 7 ZAD A C1G 1
HETATM 109 N N9 . ZAD A 1 7 ? 7.987 -0.110 -7.512 1.00 25.41 ? 7 ZAD A N9 1
HETATM 110 C C4 . ZAD A 1 7 ? 9.018 0.738 -7.691 1.00 24.17 ? 7 ZAD A C4 1
HETATM 111 N N3 . ZAD A 1 7 ? 8.993 2.078 -7.695 1.00 24.27 ? 7 ZAD A N3 1
HETATM 112 C C2 . ZAD A 1 7 ? 10.212 2.572 -7.904 1.00 28.14 ? 7 ZAD A C2 1
HETATM 113 N N1 . ZAD A 1 7 ? 11.356 1.905 -8.102 1.00 27.93 ? 7 ZAD A N1 1
HETATM 114 C C6 . ZAD A 1 7 ? 11.318 0.551 -8.104 1.00 27.18 ? 7 ZAD A C6 1
HETATM 115 N N6 . ZAD A 1 7 ? 12.418 -0.170 -8.278 1.00 27.43 ? 7 ZAD A N6 1
HETATM 116 C C5 . ZAD A 1 7 ? 10.106 -0.084 -7.883 1.00 26.88 ? 7 ZAD A C5 1
HETATM 117 N N7 . ZAD A 1 7 ? 9.763 -1.419 -7.812 1.00 28.05 ? 7 ZAD A N7 1
HETATM 118 C C8 . ZAD A 1 7 ? 8.465 -1.374 -7.596 1.00 27.15 ? 7 ZAD A C8 1
HETATM 119 P P . ZGU A 1 8 ? 7.035 -1.246 -3.773 1.00 31.50 ? 8 ZGU A P 1
HETATM 120 O O1P . ZGU A 1 8 ? 6.961 -2.747 -3.826 1.00 34.39 ? 8 ZGU A O1P 1
HETATM 121 O O2P . ZGU A 1 8 ? 6.307 -0.537 -2.690 1.00 29.36 ? 8 ZGU A O2P 1
HETATM 122 O O3G . ZGU A 1 8 ? 8.557 -0.846 -3.991 1.00 34.31 ? 8 ZGU A O3G 1
HETATM 123 C C3G . ZGU A 1 8 ? 9.414 -1.026 -2.896 1.00 34.94 ? 8 ZGU A C3G 1
HETATM 124 C C2G . ZGU A 1 8 ? 10.729 -0.315 -3.177 1.00 33.59 ? 8 ZGU A C2G 1
HETATM 125 O O2G . ZGU A 1 8 ? 11.671 -0.916 -2.313 1.00 36.00 ? 8 ZGU A O2G 1
HETATM 126 C C1G . ZGU A 1 8 ? 11.154 -0.421 -4.646 1.00 32.49 ? 8 ZGU A C1G 1
HETATM 127 N N9 . ZGU A 1 8 ? 12.393 0.290 -4.951 1.00 31.34 ? 8 ZGU A N9 1
HETATM 128 C C8 . ZGU A 1 8 ? 13.633 -0.217 -5.233 1.00 31.87 ? 8 ZGU A C8 1
HETATM 129 N N7 . ZGU A 1 8 ? 14.549 0.701 -5.467 1.00 29.97 ? 8 ZGU A N7 1
HETATM 130 C C4 . ZGU A 1 8 ? 12.549 1.647 -5.000 1.00 31.36 ? 8 ZGU A C4 1
HETATM 131 C C5 . ZGU A 1 8 ? 13.865 1.900 -5.319 1.00 30.56 ? 8 ZGU A C5 1
HETATM 132 N N3 . ZGU A 1 8 ? 11.549 2.508 -4.765 1.00 31.47 ? 8 ZGU A N3 1
HETATM 133 C C2 . ZGU A 1 8 ? 11.942 3.760 -4.878 1.00 31.72 ? 8 ZGU A C2 1
HETATM 134 N N2 . ZGU A 1 8 ? 11.006 4.700 -4.667 1.00 35.30 ? 8 ZGU A N2 1
HETATM 135 N N1 . ZGU A 1 8 ? 13.229 4.146 -5.175 1.00 31.90 ? 8 ZGU A N1 1
HETATM 136 C C6 . ZGU A 1 8 ? 14.291 3.261 -5.422 1.00 31.06 ? 8 ZGU A C6 1
HETATM 137 O O6 . ZGU A 1 8 ? 15.415 3.705 -5.702 1.00 30.56 ? 8 ZGU A O6 1
HETATM 138 NA NA . NA B 2 . ? -4.788 6.965 -9.098 1.00 53.04 ? 1001 NA A NA 1
HETATM 139 NA NA . NA C 2 . ? 5.158 12.754 -9.857 0.50 58.19 ? 1002 NA A NA 1
HETATM 140 O O . HOH D 3 . ? 4.967 8.731 -9.292 1.00 71.01 ? 2001 HOH A O 1
HETATM 141 O O . HOH D 3 . ? 16.082 12.600 -22.517 0.50 58.03 ? 2002 HOH A O 1
HETATM 142 O O . HOH D 3 . ? 6.820 10.392 -20.198 1.00 39.64 ? 2003 HOH A O 1
HETATM 143 O O . HOH D 3 . ? 0.724 4.095 -1.515 1.00 50.42 ? 2004 HOH A O 1
HETATM 144 O O . HOH D 3 . ? -5.122 10.024 -17.391 1.00 55.93 ? 2005 HOH A O 1
HETATM 145 O O . HOH D 3 . ? 4.322 7.666 -14.838 1.00 48.45 ? 2006 HOH A O 1
HETATM 146 O O . HOH D 3 . ? -4.168 3.440 -16.855 1.00 36.87 ? 2007 HOH A O 1
HETATM 147 O O . HOH D 3 . ? -0.919 15.064 -11.368 0.50 35.59 ? 2008 HOH A O 1
HETATM 148 O O . HOH D 3 . ? -4.243 10.410 -13.680 1.00 64.77 ? 2009 HOH A O 1
HETATM 149 O O . HOH D 3 . ? 4.598 6.005 -12.695 0.50 26.32 ? 2010 HOH A O 1
HETATM 150 O O . HOH D 3 . ? 4.905 6.378 -10.931 0.50 37.51 ? 2011 HOH A O 1
HETATM 151 O O . HOH D 3 . ? 6.931 -4.199 -10.204 1.00 46.04 ? 2012 HOH A O 1
HETATM 152 O O . HOH D 3 . ? -0.231 2.011 -3.769 1.00 32.21 ? 2013 HOH A O 1
HETATM 153 O O . HOH D 3 . ? 7.156 3.839 -6.970 1.00 30.03 ? 2014 HOH A O 1
HETATM 154 O O . HOH D 3 . ? 3.157 -3.253 -6.181 1.00 40.20 ? 2015 HOH A O 1
HETATM 155 O O . HOH D 3 . ? 13.267 -3.233 -7.661 1.00 49.30 ? 2016 HOH A O 1
HETATM 156 O O . HOH D 3 . ? 3.056 3.951 -4.227 1.00 41.82 ? 2017 HOH A O 1
HETATM 157 O O . HOH D 3 . ? 8.054 3.847 -4.362 1.00 53.20 ? 2018 HOH A O 1
HETATM 158 O O . HOH D 3 . ? 18.248 3.674 -5.876 1.00 37.57 ? 2019 HOH A O 1
HETATM 159 O O . HOH D 3 . ? 13.646 -3.393 -3.219 0.50 38.50 ? 2020 HOH A O 1
HETATM 160 O O . HOH D 3 . ? 5.506 -7.093 -3.369 1.00 66.33 ? 2021 HOH A O 1
#