data_2ONX
#
_entry.id 2ONX
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.377
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2ONX pdb_00002onx 10.2210/pdb2onx/pdb
RCSB RCSB041369 ? ?
WWPDB D_1000041369 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1YJP . unspecified
PDB 1YJO . unspecified
PDB 2OKZ . unspecified
PDB 2OLX . unspecified
#
_pdbx_database_status.entry_id 2ONX
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2007-01-24
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Sawaya, M.R.' 1
'Sambashivan, S.' 2
'Nelson, R.' 3
'Ivanova, M.' 4
'Sievers, S.A.' 5
'Apostol, M.I.' 6
'Thompson, M.J.' 7
'Balbirnie, M.' 8
'Wiltzius, J.J.' 9
'McFarlane, H.' 10
'Madsen, A.O.' 11
'Riekel, C.' 12
'Eisenberg, D.' 13
#
_citation.id primary
_citation.title 'Atomic structures of amyloid cross-beta spines reveal varied steric zippers.'
_citation.journal_abbrev Nature
_citation.journal_volume 447
_citation.page_first 453
_citation.page_last 457
_citation.year 2007
_citation.journal_id_ASTM NATUAS
_citation.country UK
_citation.journal_id_ISSN 0028-0836
_citation.journal_id_CSD 0006
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 17468747
_citation.pdbx_database_id_DOI 10.1038/nature05695
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Sawaya, M.R.' 1 ?
primary 'Sambashivan, S.' 2 ?
primary 'Nelson, R.' 3 ?
primary 'Ivanova, M.I.' 4 ?
primary 'Sievers, S.A.' 5 ?
primary 'Apostol, M.I.' 6 ?
primary 'Thompson, M.J.' 7 ?
primary 'Balbirnie, M.' 8 ?
primary 'Wiltzius, J.J.' 9 ?
primary 'McFarlane, H.T.' 10 ?
primary 'Madsen, A.O.' 11 ?
primary 'Riekel, C.' 12 ?
primary 'Eisenberg, D.' 13 ?
#
_cell.length_a 4.854
_cell.length_b 16.014
_cell.length_c 15.546
_cell.angle_alpha 90.000
_cell.angle_beta 96.910
_cell.angle_gamma 90.000
_cell.entry_id 2ONX
_cell.pdbx_unique_axis ?
_cell.Z_PDB 2
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'P 1 21 1'
_symmetry.entry_id 2ONX
_symmetry.Int_Tables_number 4
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description 'peptide corresponding to residues 8-11 of yeast prion sup35'
_entity.formula_weight 502.478
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment 'residues 8-11'
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code NNQQ
_entity_poly.pdbx_seq_one_letter_code_can NNQQ
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ASN n
1 2 ASN n
1 3 GLN n
1 4 GLN n
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 2ONX
_struct_ref.pdbx_db_accession 2ONX
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 2ONX
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 4
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 2ONX
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 4
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 4
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
#
_exptl.crystals_number 1
_exptl.entry_id 2ONX
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH 5.6
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_details
;30-50 mg/mL peptide disolved in water and mixed with an equal volume of reservoir solution consisting of 100 mM trisodium citrate, 20% polyethylene glycol 4000 and 20% isopropanol, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
;
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MAR CCD 165 mm'
_diffrn_detector.pdbx_collection_date 2005-07-16
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.94660
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID13'
_diffrn_source.pdbx_wavelength 0.94660
_diffrn_source.pdbx_wavelength_list ?
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID13
#
_reflns.entry_id 2ONX
_reflns.d_resolution_high 1.500
_reflns.d_resolution_low 90.000
_reflns.number_obs 259
_reflns.pdbx_Rmerge_I_obs 0.152
_reflns.pdbx_netI_over_sigmaI 10.100
_reflns.pdbx_chi_squared 1.150
_reflns.pdbx_redundancy 1.500
_reflns.percent_possible_obs 63.800
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I 0
_reflns.number_all ?
_reflns.pdbx_Rsym_value ?
_reflns.B_iso_Wilson_estimate 20.4
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_ordinal
1.50 1.62 ? ? ? 0.299 ? ? 0.949 1.20 ? 23 26.10 ? 1
1.62 1.78 ? ? ? 0.277 ? ? 1.011 1.10 ? 29 42.60 ? 2
1.78 2.04 ? ? ? 0.322 ? ? 1.279 1.30 ? 63 79.70 ? 3
2.04 2.56 ? ? ? 0.173 ? ? 1.072 1.40 ? 74 85.10 ? 4
2.56 90.00 ? ? ? 0.101 ? ? 1.169 1.90 ? 70 83.30 ? 5
#
_refine.entry_id 2ONX
_refine.ls_d_res_high 1.520
_refine.ls_d_res_low 15.430
_refine.pdbx_ls_sigma_F 0.00
_refine.ls_percent_reflns_obs 66.050
_refine.ls_number_reflns_obs 251
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.ls_R_factor_obs 0.175
_refine.ls_R_factor_R_work 0.172
_refine.ls_R_factor_R_free 0.202
_refine.ls_percent_reflns_R_free 11.200
_refine.ls_number_reflns_R_free 28
_refine.B_iso_mean 12.236
_refine.aniso_B[1][1] -1.650
_refine.aniso_B[2][2] 0.160
_refine.aniso_B[3][3] 1.590
_refine.aniso_B[1][2] 0.000
_refine.aniso_B[1][3] 0.390
_refine.aniso_B[2][3] 0.000
_refine.correlation_coeff_Fo_to_Fc 0.968
_refine.correlation_coeff_Fo_to_Fc_free 0.962
_refine.pdbx_overall_ESU_R 0.203
_refine.pdbx_overall_ESU_R_Free 0.146
_refine.overall_SU_ML 0.072
_refine.overall_SU_B 2.275
_refine.solvent_model_details MASK
_refine.pdbx_solvent_vdw_probe_radii 1.400
_refine.pdbx_solvent_ion_probe_radii 0.800
_refine.pdbx_solvent_shrinkage_radii 0.800
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_ls_sigma_I ?
_refine.ls_number_reflns_all ?
_refine.ls_R_factor_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 'pdb entry 1yjp'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.pdbx_isotropic_thermal_model ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 35
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 35
_refine_hist.d_res_high 1.520
_refine_hist.d_res_low 15.430
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 34 0.013 0.021 ? 'X-RAY DIFFRACTION' ?
r_bond_other_d 19 0.001 0.020 ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 45 1.314 1.851 ? 'X-RAY DIFFRACTION' ?
r_angle_other_deg 48 0.926 3.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 3 6.443 5.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 4 49.819 30.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 6 12.152 15.000 ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 4 0.148 0.200 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 41 0.006 0.020 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_other 3 0.000 0.020 ? 'X-RAY DIFFRACTION' ?
r_nbd_refined 1 0.201 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbd_other 16 0.165 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined 12 0.158 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbtor_other 21 0.066 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other 9 0.178 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 3 0.170 0.200 ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 26 4.914 2.000 ? 'X-RAY DIFFRACTION' ?
r_mcbond_other 7 1.240 2.000 ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 31 8.154 3.000 ? 'X-RAY DIFFRACTION' ?
r_scbond_it 16 5.002 2.000 ? 'X-RAY DIFFRACTION' ?
r_scangle_it 14 7.297 3.000 ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.d_res_high 1.520
_refine_ls_shell.d_res_low 1.563
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.percent_reflns_obs 33.330
_refine_ls_shell.number_reflns_R_work 9
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.556
_refine_ls_shell.R_factor_R_free 0.487
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 2
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs 11
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 2ONX
_struct.title 'NNQQ peptide corresponding to residues 8-11 of yeast prion sup35 (alternate crystal form)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2ONX
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
_struct_keywords.text 'steric zipper, beta sheets, PROTEIN FIBRIL'
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_struct_biol.id 1
_struct_biol.details
;One sheet of the steric zipper can be generated by repeated application of the crystallographic unit cell translation along the "a" unit cell dimension. The second sheet of the steric zipper can be generated by application of the crystallographic operator -X,1/2+Y,1-Z, and repeated unit cell translations of this strand along the "a" unit cell dimension.
;
_struct_biol.pdbx_parent_biol_id ?
#
_database_PDB_matrix.entry_id 2ONX
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.000000
_database_PDB_matrix.origx_vector[2] 0.000000
_database_PDB_matrix.origx_vector[3] 0.000000
#
_atom_sites.entry_id 2ONX
_atom_sites.fract_transf_matrix[1][1] 0.206016
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.024967
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.062445
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.064796
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . ASN A 1 1 ? 0.452 2.495 0.430 1.00 13.01 ? 1 ASN A N 1
ATOM 2 C CA . ASN A 1 1 ? 0.395 3.556 1.478 1.00 15.49 ? 1 ASN A CA 1
ATOM 3 C C . ASN A 1 1 ? -0.265 3.026 2.741 1.00 17.59 ? 1 ASN A C 1
ATOM 4 O O . ASN A 1 1 ? -1.491 3.018 2.841 1.00 22.47 ? 1 ASN A O 1
ATOM 5 C CB . ASN A 1 1 ? -0.357 4.785 0.989 1.00 23.58 ? 1 ASN A CB 1
ATOM 6 C CG . ASN A 1 1 ? 0.413 5.575 -0.038 1.00 33.44 ? 1 ASN A CG 1
ATOM 7 O OD1 . ASN A 1 1 ? 1.123 6.520 0.300 1.00 40.45 ? 1 ASN A OD1 1
ATOM 8 N ND2 . ASN A 1 1 ? 0.280 5.193 -1.305 1.00 32.63 ? 1 ASN A ND2 1
ATOM 9 N N . ASN A 1 2 ? 0.558 2.552 3.675 1.00 8.09 ? 2 ASN A N 1
ATOM 10 C CA . ASN A 1 2 ? 0.140 2.007 4.983 1.00 7.76 ? 2 ASN A CA 1
ATOM 11 C C . ASN A 1 2 ? 0.620 2.936 6.093 1.00 10.30 ? 2 ASN A C 1
ATOM 12 O O . ASN A 1 2 ? 1.782 3.318 6.098 1.00 13.35 ? 2 ASN A O 1
ATOM 13 C CB . ASN A 1 2 ? 0.827 0.661 5.208 1.00 5.39 ? 2 ASN A CB 1
ATOM 14 C CG . ASN A 1 2 ? 0.222 -0.450 4.441 1.00 11.18 ? 2 ASN A CG 1
ATOM 15 O OD1 . ASN A 1 2 ? -0.957 -0.425 4.134 1.00 14.38 ? 2 ASN A OD1 1
ATOM 16 N ND2 . ASN A 1 2 ? 1.007 -1.500 4.203 1.00 11.50 ? 2 ASN A ND2 1
ATOM 17 N N . GLN A 1 3 ? -0.251 3.283 7.036 1.00 9.07 ? 3 GLN A N 1
ATOM 18 C CA . GLN A 1 3 ? 0.168 4.035 8.225 1.00 6.77 ? 3 GLN A CA 1
ATOM 19 C C . GLN A 1 3 ? -0.483 3.441 9.469 1.00 7.12 ? 3 GLN A C 1
ATOM 20 O O . GLN A 1 3 ? -1.715 3.312 9.528 1.00 7.25 ? 3 GLN A O 1
ATOM 21 C CB . GLN A 1 3 ? -0.179 5.530 8.149 1.00 10.37 ? 3 GLN A CB 1
ATOM 22 C CG . GLN A 1 3 ? 0.537 6.314 7.109 1.00 7.68 ? 3 GLN A CG 1
ATOM 23 C CD . GLN A 1 3 ? 0.053 7.762 7.086 1.00 9.06 ? 3 GLN A CD 1
ATOM 24 O OE1 . GLN A 1 3 ? -1.169 8.035 7.199 1.00 10.09 ? 3 GLN A OE1 1
ATOM 25 N NE2 . GLN A 1 3 ? 0.997 8.690 6.976 1.00 6.75 ? 3 GLN A NE2 1
ATOM 26 N N . GLN A 1 4 ? 0.339 3.060 10.461 1.00 12.42 ? 4 GLN A N 1
ATOM 27 C CA . GLN A 1 4 ? -0.182 2.636 11.781 1.00 16.85 ? 4 GLN A CA 1
ATOM 28 C C . GLN A 1 4 ? 0.753 2.947 12.952 1.00 28.21 ? 4 GLN A C 1
ATOM 29 O O . GLN A 1 4 ? 1.615 3.841 12.868 1.00 34.15 ? 4 GLN A O 1
ATOM 30 C CB . GLN A 1 4 ? -0.526 1.156 11.784 1.00 18.06 ? 4 GLN A CB 1
ATOM 31 C CG . GLN A 1 4 ? 0.648 0.212 11.888 1.00 12.50 ? 4 GLN A CG 1
ATOM 32 C CD . GLN A 1 4 ? 0.233 -1.201 11.608 1.00 16.78 ? 4 GLN A CD 1
ATOM 33 O OE1 . GLN A 1 4 ? -0.963 -1.494 11.482 1.00 19.98 ? 4 GLN A OE1 1
ATOM 34 N NE2 . GLN A 1 4 ? 1.209 -2.096 11.524 1.00 9.66 ? 4 GLN A NE2 1
ATOM 35 O OXT . GLN A 1 4 ? 0.645 2.343 14.027 1.00 29.30 ? 4 GLN A OXT 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ASN 1 1 1 ASN ASN A . n
A 1 2 ASN 2 2 2 ASN ASN A . n
A 1 3 GLN 3 3 3 GLN GLN A . n
A 1 4 GLN 4 4 4 GLN GLN A . n
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4
_pdbx_struct_assembly_gen.asym_id_list A
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 4.8540000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 2_556 -x,y+1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 -1.8703409055 0.0000000000
1.0000000000 0.0000000000 8.0070000000 0.0000000000 0.0000000000 -1.0000000000 15.4330794366
4 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 2.9836590945 0.0000000000
1.0000000000 0.0000000000 8.0070000000 0.0000000000 0.0000000000 -1.0000000000 15.4330794366
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2007-02-06
2 'Structure model' 1 1 2008-05-01
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-10-18
5 'Structure model' 1 4 2023-08-30
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Refinement description'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Database references'
6 5 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' software
2 5 'Structure model' chem_comp_atom
3 5 'Structure model' chem_comp_bond
4 5 'Structure model' database_2
5 5 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_database_2.pdbx_DOI'
2 5 'Structure model' '_database_2.pdbx_database_accession'
#
loop_
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
_software.pdbx_ordinal
DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction'
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1
SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling'
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2
PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3
REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement
http://www.ccp4.ac.uk/main.html Fortran_77 ? 4
PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction'
http://pdb.rutgers.edu/software/ C++ ? 5
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ASN N N N N 1
ASN CA C N S 2
ASN C C N N 3
ASN O O N N 4
ASN CB C N N 5
ASN CG C N N 6
ASN OD1 O N N 7
ASN ND2 N N N 8
ASN OXT O N N 9
ASN H H N N 10
ASN H2 H N N 11
ASN HA H N N 12
ASN HB2 H N N 13
ASN HB3 H N N 14
ASN HD21 H N N 15
ASN HD22 H N N 16
ASN HXT H N N 17
GLN N N N N 18
GLN CA C N S 19
GLN C C N N 20
GLN O O N N 21
GLN CB C N N 22
GLN CG C N N 23
GLN CD C N N 24
GLN OE1 O N N 25
GLN NE2 N N N 26
GLN OXT O N N 27
GLN H H N N 28
GLN H2 H N N 29
GLN HA H N N 30
GLN HB2 H N N 31
GLN HB3 H N N 32
GLN HG2 H N N 33
GLN HG3 H N N 34
GLN HE21 H N N 35
GLN HE22 H N N 36
GLN HXT H N N 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ASN N CA sing N N 1
ASN N H sing N N 2
ASN N H2 sing N N 3
ASN CA C sing N N 4
ASN CA CB sing N N 5
ASN CA HA sing N N 6
ASN C O doub N N 7
ASN C OXT sing N N 8
ASN CB CG sing N N 9
ASN CB HB2 sing N N 10
ASN CB HB3 sing N N 11
ASN CG OD1 doub N N 12
ASN CG ND2 sing N N 13
ASN ND2 HD21 sing N N 14
ASN ND2 HD22 sing N N 15
ASN OXT HXT sing N N 16
GLN N CA sing N N 17
GLN N H sing N N 18
GLN N H2 sing N N 19
GLN CA C sing N N 20
GLN CA CB sing N N 21
GLN CA HA sing N N 22
GLN C O doub N N 23
GLN C OXT sing N N 24
GLN CB CG sing N N 25
GLN CB HB2 sing N N 26
GLN CB HB3 sing N N 27
GLN CG CD sing N N 28
GLN CG HG2 sing N N 29
GLN CG HG3 sing N N 30
GLN CD OE1 doub N N 31
GLN CD NE2 sing N N 32
GLN NE2 HE21 sing N N 33
GLN NE2 HE22 sing N N 34
GLN OXT HXT sing N N 35
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1YJP
_pdbx_initial_refinement_model.details 'pdb entry 1yjp'
#