data_2ONV
#
_entry.id 2ONV
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2ONV pdb_00002onv 10.2210/pdb2onv/pdb
RCSB RCSB041367 ? ?
WWPDB D_1000041367 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2007-02-06
2 'Structure model' 1 1 2008-05-01
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-10-18
5 'Structure model' 1 4 2023-12-27
6 'Structure model' 1 5 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Refinement description'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Database references'
6 6 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' software
2 5 'Structure model' chem_comp_atom
3 5 'Structure model' chem_comp_bond
4 5 'Structure model' database_2
5 6 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_database_2.pdbx_DOI'
2 5 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.entry_id 2ONV
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2007-01-24
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Sambashivan, S.' 1
'Sawaya, M.R.' 2
'Eisenberg, D.' 3
#
_citation.id primary
_citation.title 'Atomic structures of amyloid cross-beta spines reveal varied steric zippers.'
_citation.journal_abbrev Nature
_citation.journal_volume 447
_citation.page_first 453
_citation.page_last 457
_citation.year 2007
_citation.journal_id_ASTM NATUAS
_citation.country UK
_citation.journal_id_ISSN 0028-0836
_citation.journal_id_CSD 0006
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 17468747
_citation.pdbx_database_id_DOI 10.1038/nature05695
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Sawaya, M.R.' 1 ?
primary 'Sambashivan, S.' 2 ?
primary 'Nelson, R.' 3 ?
primary 'Ivanova, M.I.' 4 ?
primary 'Sievers, S.A.' 5 ?
primary 'Apostol, M.I.' 6 ?
primary 'Thompson, M.J.' 7 ?
primary 'Balbirnie, M.' 8 ?
primary 'Wiltzius, J.J.' 9 ?
primary 'McFarlane, H.T.' 10 ?
primary 'Madsen, A.O.' 11 ?
primary 'Riekel, C.' 12 ?
primary 'Eisenberg, D.' 13 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;amyloid-fibril forming peptide GGVVIA derived from the Alzheimer's amyloid Abeta
;
514.616 1 ? ? 'residues 37-42' ?
2 water nat water 18.015 3 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code GGVVIA
_entity_poly.pdbx_seq_one_letter_code_can GGVVIA
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 GLY n
1 3 VAL n
1 4 VAL n
1 5 ILE n
1 6 ALA n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'Peptide was commercially synthesized by CSBio.'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 1 1 GLY GLY A . n
A 1 2 GLY 2 2 2 GLY GLY A . n
A 1 3 VAL 3 3 3 VAL VAL A . n
A 1 4 VAL 4 4 4 VAL VAL A . n
A 1 5 ILE 5 5 5 ILE ILE A . n
A 1 6 ALA 6 6 6 ALA ALA A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 10 10 HOH HOH A .
B 2 HOH 2 11 11 HOH HOH A .
B 2 HOH 3 12 12 HOH HOH A .
#
loop_
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
_software.pdbx_ordinal
DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction'
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1
SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling'
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2
PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3
REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement
http://www.ccp4.ac.uk/main.html Fortran_77 ? 4
PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction'
http://pdb.rutgers.edu/software/ C++ ? 5
#
_cell.length_a 16.760
_cell.length_b 41.134
_cell.length_c 4.789
_cell.angle_alpha 90.000
_cell.angle_beta 90.000
_cell.angle_gamma 90.000
_cell.entry_id 2ONV
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'P 21 21 2'
_symmetry.entry_id 2ONV
_symmetry.Int_Tables_number 18
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
_exptl.crystals_number 1
_exptl.entry_id 2ONV
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 1.60
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 23.31
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.temp 291
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_details
;Peptide concentration: 15.0 mg/ml, Peptide:reservoir:additive ratio 5:4:1, Reservoir: 2.0M Ammonium sulfate, Additive: 3.0% 0.1M hexamine cobalt (III) chloride , VAPOR DIFFUSION, HANGING DROP, temperature 291K
;
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MAR CCD 165 mm'
_diffrn_detector.pdbx_collection_date 2005-12-17
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9466
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID13'
_diffrn_source.pdbx_wavelength 0.9466
_diffrn_source.pdbx_wavelength_list ?
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID13
#
_reflns.entry_id 2ONV
_reflns.d_resolution_high 1.600
_reflns.d_resolution_low 90.000
_reflns.number_obs 532
_reflns.pdbx_Rmerge_I_obs 0.192
_reflns.pdbx_netI_over_sigmaI 12.600
_reflns.pdbx_chi_squared 1.085
_reflns.pdbx_redundancy 4.500
_reflns.percent_possible_obs 96.700
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.number_all ?
_reflns.pdbx_Rsym_value ?
_reflns.B_iso_Wilson_estimate 15.962
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.60
_reflns_shell.d_res_low 1.72
_reflns_shell.number_measured_obs ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_unique_obs ?
_reflns_shell.Rmerge_I_obs 0.42
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared 1.102
_reflns_shell.pdbx_redundancy 4.90
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 87
_reflns_shell.percent_possible_all 96.70
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 2ONV
_refine.ls_d_res_high 1.610
_refine.ls_d_res_low 20.570
_refine.pdbx_ls_sigma_F 0.00
_refine.ls_percent_reflns_obs 96.440
_refine.ls_number_reflns_obs 515
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.ls_R_factor_obs 0.235
_refine.ls_R_factor_R_work 0.228
_refine.ls_R_factor_R_free 0.299
_refine.ls_percent_reflns_R_free 9.900
_refine.ls_number_reflns_R_free 51
_refine.B_iso_mean 9.990
_refine.aniso_B[1][1] 0.700
_refine.aniso_B[2][2] 0.890
_refine.aniso_B[3][3] -1.590
_refine.aniso_B[1][2] 0.000
_refine.aniso_B[1][3] 0.000
_refine.aniso_B[2][3] 0.000
_refine.correlation_coeff_Fo_to_Fc 0.957
_refine.correlation_coeff_Fo_to_Fc_free 0.852
_refine.pdbx_overall_ESU_R 0.137
_refine.pdbx_overall_ESU_R_Free 0.146
_refine.overall_SU_ML 0.136
_refine.overall_SU_B 4.479
_refine.solvent_model_details MASK
_refine.pdbx_solvent_vdw_probe_radii 1.400
_refine.pdbx_solvent_ion_probe_radii 0.800
_refine.pdbx_solvent_shrinkage_radii 0.800
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_ls_sigma_I ?
_refine.ls_number_reflns_all ?
_refine.ls_R_factor_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 'Extended beta strand GGVVIA'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.pdbx_isotropic_thermal_model ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 36
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 3
_refine_hist.number_atoms_total 39
_refine_hist.d_res_high 1.610
_refine_hist.d_res_low 20.570
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 35 0.012 0.023 ? 'X-RAY DIFFRACTION' ?
r_bond_other_d 18 0.002 0.020 ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 47 1.859 2.040 ? 'X-RAY DIFFRACTION' ?
r_angle_other_deg 46 1.041 3.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 5 8.031 5.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 4 1.738 15.000 ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 7 0.084 0.200 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 39 0.004 0.020 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_other 5 0.000 0.020 ? 'X-RAY DIFFRACTION' ?
r_nbd_refined 1 0.026 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbd_other 12 0.182 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined 17 0.158 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbtor_other 19 0.078 0.200 ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 2 0.352 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 4 0.160 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other 8 0.273 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 3 0.148 0.200 ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 35 1.388 1.500 ? 'X-RAY DIFFRACTION' ?
r_mcbond_other 13 0.137 1.500 ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 43 1.773 2.000 ? 'X-RAY DIFFRACTION' ?
r_scbond_it 7 0.651 3.000 ? 'X-RAY DIFFRACTION' ?
r_scangle_it 4 0.890 4.500 ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.d_res_high 1.610
_refine_ls_shell.d_res_low 1.653
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.percent_reflns_obs 88.460
_refine_ls_shell.number_reflns_R_work 22
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.324
_refine_ls_shell.R_factor_R_free 0.007
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 1
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs 23
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 2ONV
_struct.title
;Crystal Structure of the amyloid-fibril forming peptide GGVVIA derived from the Alzheimer's amyloid Abeta (Abeta37-42).
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2ONV
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
_struct_keywords.text 'steric zipper, beta sheets, PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 2ONV
_struct_ref.pdbx_db_accession 2ONV
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 2ONV
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 2ONV
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_556 x,y,z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4.7890000000
3 'crystal symmetry operation' 4_555 x+1/2,-y+1/2,-z 1.0000000000 0.0000000000 0.0000000000 8.3800000000 0.0000000000
-1.0000000000 0.0000000000 20.5670000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
4 'crystal symmetry operation' 4_556 x+1/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 8.3800000000 0.0000000000
-1.0000000000 0.0000000000 20.5670000000 0.0000000000 0.0000000000 -1.0000000000 4.7890000000
#
_struct_biol.id 1
_struct_biol.details
;The biological unit is a pair of sheets. Beta strands within the sheet are generated by unit cell translations along the z-axis. The second sheet in the pair of sheets is generated by applying the symmetry operator x+1/2, -y+1/2, -z. Within the second sheet also, beta strands are generated by unit cell translations along the z-axis.
;
_struct_biol.pdbx_parent_biol_id ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
GLY N N N N 14
GLY CA C N N 15
GLY C C N N 16
GLY O O N N 17
GLY OXT O N N 18
GLY H H N N 19
GLY H2 H N N 20
GLY HA2 H N N 21
GLY HA3 H N N 22
GLY HXT H N N 23
HOH O O N N 24
HOH H1 H N N 25
HOH H2 H N N 26
ILE N N N N 27
ILE CA C N S 28
ILE C C N N 29
ILE O O N N 30
ILE CB C N S 31
ILE CG1 C N N 32
ILE CG2 C N N 33
ILE CD1 C N N 34
ILE OXT O N N 35
ILE H H N N 36
ILE H2 H N N 37
ILE HA H N N 38
ILE HB H N N 39
ILE HG12 H N N 40
ILE HG13 H N N 41
ILE HG21 H N N 42
ILE HG22 H N N 43
ILE HG23 H N N 44
ILE HD11 H N N 45
ILE HD12 H N N 46
ILE HD13 H N N 47
ILE HXT H N N 48
VAL N N N N 49
VAL CA C N S 50
VAL C C N N 51
VAL O O N N 52
VAL CB C N N 53
VAL CG1 C N N 54
VAL CG2 C N N 55
VAL OXT O N N 56
VAL H H N N 57
VAL H2 H N N 58
VAL HA H N N 59
VAL HB H N N 60
VAL HG11 H N N 61
VAL HG12 H N N 62
VAL HG13 H N N 63
VAL HG21 H N N 64
VAL HG22 H N N 65
VAL HG23 H N N 66
VAL HXT H N N 67
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
GLY N CA sing N N 13
GLY N H sing N N 14
GLY N H2 sing N N 15
GLY CA C sing N N 16
GLY CA HA2 sing N N 17
GLY CA HA3 sing N N 18
GLY C O doub N N 19
GLY C OXT sing N N 20
GLY OXT HXT sing N N 21
HOH O H1 sing N N 22
HOH O H2 sing N N 23
ILE N CA sing N N 24
ILE N H sing N N 25
ILE N H2 sing N N 26
ILE CA C sing N N 27
ILE CA CB sing N N 28
ILE CA HA sing N N 29
ILE C O doub N N 30
ILE C OXT sing N N 31
ILE CB CG1 sing N N 32
ILE CB CG2 sing N N 33
ILE CB HB sing N N 34
ILE CG1 CD1 sing N N 35
ILE CG1 HG12 sing N N 36
ILE CG1 HG13 sing N N 37
ILE CG2 HG21 sing N N 38
ILE CG2 HG22 sing N N 39
ILE CG2 HG23 sing N N 40
ILE CD1 HD11 sing N N 41
ILE CD1 HD12 sing N N 42
ILE CD1 HD13 sing N N 43
ILE OXT HXT sing N N 44
VAL N CA sing N N 45
VAL N H sing N N 46
VAL N H2 sing N N 47
VAL CA C sing N N 48
VAL CA CB sing N N 49
VAL CA HA sing N N 50
VAL C O doub N N 51
VAL C OXT sing N N 52
VAL CB CG1 sing N N 53
VAL CB CG2 sing N N 54
VAL CB HB sing N N 55
VAL CG1 HG11 sing N N 56
VAL CG1 HG12 sing N N 57
VAL CG1 HG13 sing N N 58
VAL CG2 HG21 sing N N 59
VAL CG2 HG22 sing N N 60
VAL CG2 HG23 sing N N 61
VAL OXT HXT sing N N 62
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'in silico model'
_pdbx_initial_refinement_model.source_name Other
_pdbx_initial_refinement_model.details 'geometrically idealized b-strands'
#
_atom_sites.entry_id 2ONV
_atom_sites.fract_transf_matrix[1][1] 0.059666
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.024311
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.208812
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . GLY A 1 1 ? 5.448 0.358 1.477 1.00 18.56 ? 1 GLY A N 1
ATOM 2 C CA . GLY A 1 1 ? 4.157 0.926 0.945 1.00 17.31 ? 1 GLY A CA 1
ATOM 3 C C . GLY A 1 1 ? 3.737 2.186 1.662 1.00 16.09 ? 1 GLY A C 1
ATOM 4 O O . GLY A 1 1 ? 3.868 2.279 2.864 1.00 16.40 ? 1 GLY A O 1
ATOM 5 N N . GLY A 1 2 ? 3.207 3.162 0.941 1.00 15.02 ? 2 GLY A N 1
ATOM 6 C CA . GLY A 1 2 ? 2.730 4.337 1.617 1.00 14.02 ? 2 GLY A CA 1
ATOM 7 C C . GLY A 1 2 ? 1.999 5.394 0.838 1.00 12.72 ? 2 GLY A C 1
ATOM 8 O O . GLY A 1 2 ? 1.902 5.342 -0.396 1.00 12.12 ? 2 GLY A O 1
ATOM 9 N N . VAL A 1 3 ? 1.495 6.360 1.598 1.00 12.11 ? 3 VAL A N 1
ATOM 10 C CA . VAL A 1 3 ? 0.791 7.514 1.052 1.00 11.77 ? 3 VAL A CA 1
ATOM 11 C C . VAL A 1 3 ? 1.365 8.757 1.681 1.00 11.03 ? 3 VAL A C 1
ATOM 12 O O . VAL A 1 3 ? 1.525 8.803 2.880 1.00 10.12 ? 3 VAL A O 1
ATOM 13 C CB . VAL A 1 3 ? -0.729 7.438 1.336 1.00 11.80 ? 3 VAL A CB 1
ATOM 14 C CG1 . VAL A 1 3 ? -1.425 8.689 0.835 1.00 13.07 ? 3 VAL A CG1 1
ATOM 15 C CG2 . VAL A 1 3 ? -1.320 6.222 0.674 1.00 11.62 ? 3 VAL A CG2 1
ATOM 16 N N . VAL A 1 4 ? 1.671 9.753 0.867 1.00 11.08 ? 4 VAL A N 1
ATOM 17 C CA . VAL A 1 4 ? 2.143 11.055 1.346 1.00 11.44 ? 4 VAL A CA 1
ATOM 18 C C . VAL A 1 4 ? 1.308 12.152 0.692 1.00 11.61 ? 4 VAL A C 1
ATOM 19 O O . VAL A 1 4 ? 1.212 12.202 -0.526 1.00 11.10 ? 4 VAL A O 1
ATOM 20 C CB . VAL A 1 4 ? 3.623 11.320 0.965 1.00 11.07 ? 4 VAL A CB 1
ATOM 21 C CG1 . VAL A 1 4 ? 4.028 12.705 1.382 1.00 11.04 ? 4 VAL A CG1 1
ATOM 22 C CG2 . VAL A 1 4 ? 4.527 10.283 1.574 1.00 10.05 ? 4 VAL A CG2 1
ATOM 23 N N . ILE A 1 5 ? 0.709 13.017 1.511 1.00 12.73 ? 5 ILE A N 1
ATOM 24 C CA . ILE A 1 5 ? 0.160 14.284 1.048 1.00 13.44 ? 5 ILE A CA 1
ATOM 25 C C . ILE A 1 5 ? 1.007 15.395 1.685 1.00 13.70 ? 5 ILE A C 1
ATOM 26 O O . ILE A 1 5 ? 0.991 15.571 2.888 1.00 12.38 ? 5 ILE A O 1
ATOM 27 C CB . ILE A 1 5 ? -1.350 14.448 1.361 1.00 13.51 ? 5 ILE A CB 1
ATOM 28 C CG1 . ILE A 1 5 ? -2.164 13.296 0.765 1.00 13.74 ? 5 ILE A CG1 1
ATOM 29 C CG2 . ILE A 1 5 ? -1.854 15.781 0.775 1.00 13.55 ? 5 ILE A CG2 1
ATOM 30 C CD1 . ILE A 1 5 ? -3.668 13.402 1.046 1.00 13.28 ? 5 ILE A CD1 1
ATOM 31 N N . ALA A 1 6 ? 1.795 16.092 0.870 1.00 15.80 ? 6 ALA A N 1
ATOM 32 C CA . ALA A 1 6 ? 2.762 17.082 1.380 1.00 17.00 ? 6 ALA A CA 1
ATOM 33 C C . ALA A 1 6 ? 2.953 18.283 0.461 1.00 19.11 ? 6 ALA A C 1
ATOM 34 O O . ALA A 1 6 ? 3.980 18.962 0.539 1.00 21.56 ? 6 ALA A O 1
ATOM 35 C CB . ALA A 1 6 ? 4.114 16.422 1.647 1.00 17.80 ? 6 ALA A CB 1
ATOM 36 O OXT . ALA A 1 6 ? 2.120 18.667 -0.362 1.00 21.05 ? 6 ALA A OXT 1
HETATM 37 O O . HOH B 2 . ? -0.641 19.120 -1.740 1.00 33.62 ? 10 HOH A O 1
HETATM 38 O O . HOH B 2 . ? 7.563 19.494 1.368 1.00 39.76 ? 11 HOH A O 1
HETATM 39 O O . HOH B 2 . ? 6.415 18.823 -0.451 1.00 49.35 ? 12 HOH A O 1
#