data_2OMM
#
_entry.id 2OMM
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.377
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2OMM pdb_00002omm 10.2210/pdb2omm/pdb
RCSB RCSB041323 ? ?
WWPDB D_1000041323 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1YJP 'Same peptide, different crystal packing' unspecified
PDB 2OLX 'NNQQ, a four residue fragment of GNNQQNY' unspecified
PDB 1YJO 'NNQQNY, a six residue fragment of GNNQQNY' unspecified
#
_pdbx_database_status.entry_id 2OMM
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2007-01-22
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Sawaya, M.R.' 1
'Nelson, R.' 2
'Eisenberg, D.' 3
#
_citation.id primary
_citation.title 'Atomic structures of amyloid cross-beta spines reveal varied steric zippers.'
_citation.journal_abbrev Nature
_citation.journal_volume 447
_citation.page_first 453
_citation.page_last 457
_citation.year 2007
_citation.journal_id_ASTM NATUAS
_citation.country UK
_citation.journal_id_ISSN 0028-0836
_citation.journal_id_CSD 0006
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 17468747
_citation.pdbx_database_id_DOI 10.1038/nature05695
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Sawaya, M.R.' 1 ?
primary 'Sambashivan, S.' 2 ?
primary 'Nelson, R.' 3 ?
primary 'Ivanova, M.I.' 4 ?
primary 'Sievers, S.A.' 5 ?
primary 'Apostol, M.I.' 6 ?
primary 'Thompson, M.J.' 7 ?
primary 'Balbirnie, M.' 8 ?
primary 'Wiltzius, J.J.' 9 ?
primary 'McFarlane, H.T.' 10 ?
primary 'Madsen, A.O.' 11 ?
primary 'Riekel, C.' 12 ?
primary 'Eisenberg, D.' 13 ?
#
_cell.length_a 23.324
_cell.length_b 4.934
_cell.length_c 37.548
_cell.angle_alpha 90.000
_cell.angle_beta 90.000
_cell.angle_gamma 90.000
_cell.entry_id 2OMM
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.entry_id 2OMM
_symmetry.Int_Tables_number 19
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'GNNQQNY peptide corresponding to residues 7-13 of yeast prion sup35' 836.807 1 ? ? 'residues 7-13' ?
2 water nat water 18.015 3 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code GNNQQNY
_entity_poly.pdbx_seq_one_letter_code_can GNNQQNY
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 ASN n
1 3 ASN n
1 4 GLN n
1 5 GLN n
1 6 ASN n
1 7 TYR n
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 2OMM
_struct_ref.pdbx_db_accession 2OMM
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 2OMM
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 7
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 2OMM
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 7
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 7
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HOH non-polymer . WATER ? 'H2 O' 18.015
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
#
_exptl.crystals_number 1
_exptl.entry_id 2OMM
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'EVAPORATION, RECRYSTALLIZATION'
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_details
;peptide was dissolved at 10 mg/mL in water, quickly filtered, and left to sit at room temperature, EVAPORATION, RECRYSTALLIZATION, temperature 298K
;
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MAR CCD 165 mm'
_diffrn_detector.pdbx_collection_date 2005-07-16
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.94660
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID13'
_diffrn_source.pdbx_wavelength 0.94660
_diffrn_source.pdbx_wavelength_list ?
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID13
#
_reflns.entry_id 2OMM
_reflns.d_resolution_high 2.000
_reflns.number_obs 380
_reflns.pdbx_Rmerge_I_obs 0.248
_reflns.pdbx_netI_over_sigmaI 4.610
_reflns.percent_possible_obs 96.400
_reflns.B_iso_Wilson_estimate 2.446
_reflns.observed_criterion_sigma_I -3.00
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 19.81
_reflns.number_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_ordinal
2.00 2.20 261 ? ? 0.417 2.7 ? ? ? ? 90 98.90 ? 1
2.20 2.50 267 ? ? 0.391 3.3 ? ? ? ? 97 94.20 ? 2
2.50 3.00 193 ? ? 0.301 3.8 ? ? ? ? 69 98.60 ? 3
3.00 ? 307 ? ? 0.13 8.1 ? ? ? ? 101 97.10 ? 4
#
_refine.entry_id 2OMM
_refine.ls_d_res_high 2.000
_refine.ls_d_res_low 19.810
_refine.pdbx_ls_sigma_F 0.00
_refine.ls_percent_reflns_obs 94.660
_refine.ls_number_reflns_obs 372
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.ls_R_factor_obs 0.242
_refine.ls_R_factor_R_work 0.241
_refine.ls_R_factor_R_free 0.252
_refine.ls_percent_reflns_R_free 4.800
_refine.ls_number_reflns_R_free 18
_refine.B_iso_mean 12.533
_refine.aniso_B[1][1] 0.050
_refine.aniso_B[2][2] 0.190
_refine.aniso_B[3][3] -0.240
_refine.aniso_B[1][2] 0.000
_refine.aniso_B[1][3] 0.000
_refine.aniso_B[2][3] 0.000
_refine.correlation_coeff_Fo_to_Fc 0.904
_refine.correlation_coeff_Fo_to_Fc_free 0.885
_refine.pdbx_overall_ESU_R 0.382
_refine.pdbx_overall_ESU_R_Free 0.218
_refine.overall_SU_ML 0.141
_refine.overall_SU_B 5.080
_refine.solvent_model_details MASK
_refine.pdbx_solvent_vdw_probe_radii 1.400
_refine.pdbx_solvent_ion_probe_radii 0.800
_refine.pdbx_solvent_shrinkage_radii 0.800
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_ls_sigma_I ?
_refine.ls_number_reflns_all ?
_refine.ls_R_factor_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 'pdb entry 1yjp'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.pdbx_isotropic_thermal_model ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_phase_error ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 59
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 3
_refine_hist.number_atoms_total 62
_refine_hist.d_res_high 2.000
_refine_hist.d_res_low 19.810
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 59 0.011 0.021 ? 'X-RAY DIFFRACTION' ?
r_bond_other_d 34 0.001 0.020 ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 79 1.544 1.857 ? 'X-RAY DIFFRACTION' ?
r_angle_other_deg 83 0.635 3.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 6 7.418 5.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 6 56.115 28.333 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 8 11.183 15.000 ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 6 0.104 0.200 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 74 0.006 0.020 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_other 10 0.002 0.020 ? 'X-RAY DIFFRACTION' ?
r_nbd_refined 3 0.123 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbd_other 24 0.180 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined 23 0.180 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbtor_other 27 0.085 0.200 ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 2 0.149 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 9 0.153 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other 13 0.159 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 4 0.076 0.200 ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 45 2.691 2.000 ? 'X-RAY DIFFRACTION' ?
r_mcbond_other 14 0.873 2.000 ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 52 3.309 3.000 ? 'X-RAY DIFFRACTION' ?
r_scbond_it 34 2.295 2.000 ? 'X-RAY DIFFRACTION' ?
r_scangle_it 27 2.561 3.000 ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.d_res_high 2.000
_refine_ls_shell.d_res_low 2.053
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.percent_reflns_obs 95.000
_refine_ls_shell.number_reflns_R_work 18
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.22
_refine_ls_shell.R_factor_R_free 0.088
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 1
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs 19
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 2OMM
_struct.title 'GNNQQNY peptide corresponding to residues 7-13 of yeast prion sup35'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2OMM
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
_struct_keywords.text 'steric zipper, glutamine zipper, polar zipper, asparagine zipper, PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_biol.id 1
_struct_biol.details
;One sheet of the steric zipper can be generated by repeated application of the crystallographic unit cell translation along the b axis.

The second sheet of the steric zipper can be generated by application of the crystallographic operator -X+1,-1/2+Y,1/2-Z, and repeated unit cell translations of this strand along the b axis.
;
_struct_biol.pdbx_parent_biol_id ?
#
_atom_sites.entry_id 2OMM
_atom_sites.fract_transf_matrix[1][1] 0.042874
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.202675
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.026633
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . GLY A 1 1 ? 2.913 1.693 2.714 1.00 23.50 ? 1 GLY A N 1
ATOM 2 C CA . GLY A 1 1 ? 3.184 2.028 4.142 1.00 18.20 ? 1 GLY A CA 1
ATOM 3 C C . GLY A 1 1 ? 4.165 3.179 4.279 1.00 15.44 ? 1 GLY A C 1
ATOM 4 O O . GLY A 1 1 ? 4.468 3.883 3.307 1.00 10.77 ? 1 GLY A O 1
ATOM 5 N N . ASN A 1 2 ? 4.661 3.366 5.498 1.00 11.68 ? 2 ASN A N 1
ATOM 6 C CA . ASN A 1 2 ? 5.625 4.413 5.776 1.00 13.34 ? 2 ASN A CA 1
ATOM 7 C C . ASN A 1 2 ? 6.968 3.831 5.425 1.00 12.48 ? 2 ASN A C 1
ATOM 8 O O . ASN A 1 2 ? 7.194 2.612 5.642 1.00 13.23 ? 2 ASN A O 1
ATOM 9 C CB . ASN A 1 2 ? 5.582 4.865 7.247 1.00 14.57 ? 2 ASN A CB 1
ATOM 10 C CG . ASN A 1 2 ? 4.169 5.210 7.727 1.00 16.09 ? 2 ASN A CG 1
ATOM 11 O OD1 . ASN A 1 2 ? 3.803 6.385 7.853 1.00 10.16 ? 2 ASN A OD1 1
ATOM 12 N ND2 . ASN A 1 2 ? 3.371 4.173 8.003 1.00 14.56 ? 2 ASN A ND2 1
ATOM 13 N N . ASN A 1 3 ? 7.851 4.703 4.941 1.00 6.86 ? 3 ASN A N 1
ATOM 14 C CA . ASN A 1 3 ? 9.134 4.342 4.336 1.00 10.42 ? 3 ASN A CA 1
ATOM 15 C C . ASN A 1 3 ? 10.304 4.867 5.145 1.00 12.24 ? 3 ASN A C 1
ATOM 16 O O . ASN A 1 3 ? 10.370 6.078 5.367 1.00 7.66 ? 3 ASN A O 1
ATOM 17 C CB . ASN A 1 3 ? 9.189 4.966 2.915 1.00 11.62 ? 3 ASN A CB 1
ATOM 18 C CG . ASN A 1 3 ? 10.480 4.637 2.140 1.00 8.88 ? 3 ASN A CG 1
ATOM 19 O OD1 . ASN A 1 3 ? 10.875 3.475 2.004 1.00 11.30 ? 3 ASN A OD1 1
ATOM 20 N ND2 . ASN A 1 3 ? 11.134 5.672 1.615 1.00 12.04 ? 3 ASN A ND2 1
ATOM 21 N N . GLN A 1 4 ? 11.177 3.963 5.627 1.00 7.39 ? 4 GLN A N 1
ATOM 22 C CA . GLN A 1 4 ? 12.501 4.342 6.143 1.00 8.98 ? 4 GLN A CA 1
ATOM 23 C C . GLN A 1 4 ? 13.585 3.685 5.261 1.00 11.18 ? 4 GLN A C 1
ATOM 24 O O . GLN A 1 4 ? 13.535 2.483 4.970 1.00 11.96 ? 4 GLN A O 1
ATOM 25 C CB . GLN A 1 4 ? 12.710 3.961 7.602 1.00 9.59 ? 4 GLN A CB 1
ATOM 26 C CG . GLN A 1 4 ? 13.939 4.620 8.226 1.00 7.26 ? 4 GLN A CG 1
ATOM 27 C CD . GLN A 1 4 ? 14.118 4.300 9.709 1.00 10.24 ? 4 GLN A CD 1
ATOM 28 O OE1 . GLN A 1 4 ? 14.287 3.138 10.106 1.00 7.21 ? 4 GLN A OE1 1
ATOM 29 N NE2 . GLN A 1 4 ? 14.095 5.337 10.533 1.00 7.93 ? 4 GLN A NE2 1
ATOM 30 N N . GLN A 1 5 ? 14.515 4.501 4.774 1.00 12.07 ? 5 GLN A N 1
ATOM 31 C CA . GLN A 1 5 ? 15.597 4.025 3.935 1.00 12.33 ? 5 GLN A CA 1
ATOM 32 C C . GLN A 1 5 ? 16.894 4.578 4.519 1.00 13.41 ? 5 GLN A C 1
ATOM 33 O O . GLN A 1 5 ? 17.117 5.804 4.556 1.00 12.86 ? 5 GLN A O 1
ATOM 34 C CB . GLN A 1 5 ? 15.385 4.436 2.477 1.00 13.09 ? 5 GLN A CB 1
ATOM 35 C CG . GLN A 1 5 ? 14.226 3.656 1.808 1.00 15.38 ? 5 GLN A CG 1
ATOM 36 C CD . GLN A 1 5 ? 14.017 4.001 0.349 1.00 13.93 ? 5 GLN A CD 1
ATOM 37 O OE1 . GLN A 1 5 ? 14.241 5.132 -0.084 1.00 20.44 ? 5 GLN A OE1 1
ATOM 38 N NE2 . GLN A 1 5 ? 13.568 3.037 -0.409 1.00 12.52 ? 5 GLN A NE2 1
ATOM 39 N N . ASN A 1 6 ? 17.738 3.659 4.983 1.00 12.89 ? 6 ASN A N 1
ATOM 40 C CA . ASN A 1 6 ? 19.001 4.007 5.610 1.00 15.89 ? 6 ASN A CA 1
ATOM 41 C C . ASN A 1 6 ? 20.166 3.465 4.778 1.00 17.30 ? 6 ASN A C 1
ATOM 42 O O . ASN A 1 6 ? 20.683 2.385 5.043 1.00 15.29 ? 6 ASN A O 1
ATOM 43 C CB . ASN A 1 6 ? 19.045 3.471 7.045 1.00 15.51 ? 6 ASN A CB 1
ATOM 44 C CG . ASN A 1 6 ? 17.806 3.831 7.845 1.00 16.34 ? 6 ASN A CG 1
ATOM 45 O OD1 . ASN A 1 6 ? 17.647 4.964 8.293 1.00 12.19 ? 6 ASN A OD1 1
ATOM 46 N ND2 . ASN A 1 6 ? 16.929 2.846 8.054 1.00 16.35 ? 6 ASN A ND2 1
ATOM 47 N N . TYR A 1 7 ? 20.556 4.232 3.766 1.00 20.56 ? 7 TYR A N 1
ATOM 48 C CA . TYR A 1 7 ? 21.652 3.845 2.865 1.00 21.50 ? 7 TYR A CA 1
ATOM 49 C C . TYR A 1 7 ? 22.964 4.223 3.522 1.00 22.07 ? 7 TYR A C 1
ATOM 50 O O . TYR A 1 7 ? 22.989 5.144 4.356 1.00 18.72 ? 7 TYR A O 1
ATOM 51 C CB . TYR A 1 7 ? 21.608 4.590 1.535 1.00 22.54 ? 7 TYR A CB 1
ATOM 52 C CG . TYR A 1 7 ? 20.253 4.870 0.918 1.00 23.05 ? 7 TYR A CG 1
ATOM 53 C CD1 . TYR A 1 7 ? 19.510 6.005 1.285 1.00 23.43 ? 7 TYR A CD1 1
ATOM 54 C CD2 . TYR A 1 7 ? 19.751 4.065 -0.095 1.00 21.96 ? 7 TYR A CD2 1
ATOM 55 C CE1 . TYR A 1 7 ? 18.285 6.292 0.691 1.00 23.07 ? 7 TYR A CE1 1
ATOM 56 C CE2 . TYR A 1 7 ? 18.516 4.338 -0.693 1.00 23.14 ? 7 TYR A CE2 1
ATOM 57 C CZ . TYR A 1 7 ? 17.791 5.460 -0.296 1.00 23.59 ? 7 TYR A CZ 1
ATOM 58 O OH . TYR A 1 7 ? 16.579 5.744 -0.886 1.00 21.70 ? 7 TYR A OH 1
ATOM 59 O OXT . TYR A 1 7 ? 24.019 3.659 3.211 1.00 24.06 ? 7 TYR A OXT 1
HETATM 60 O O . HOH B 2 . ? 22.632 5.806 8.997 1.00 22.63 ? 8 HOH A O 1
HETATM 61 O O . HOH B 2 . ? 22.674 3.931 7.114 1.00 21.88 ? 9 HOH A O 1
HETATM 62 O O . HOH B 2 . ? 25.212 4.567 5.603 1.00 30.06 ? 10 HOH A O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 1 1 GLY GLY A . n
A 1 2 ASN 2 2 2 ASN ASN A . n
A 1 3 ASN 3 3 3 ASN ASN A . n
A 1 4 GLN 4 4 4 GLN GLN A . n
A 1 5 GLN 5 5 5 GLN GLN A . n
A 1 6 ASN 6 6 6 ASN ASN A . n
A 1 7 TYR 7 7 7 TYR TYR A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 8 1 HOH HOH A .
B 2 HOH 2 9 2 HOH HOH A .
B 2 HOH 3 10 3 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 4.9340000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 3_645 -x+1,y-1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 23.3240000000 0.0000000000
1.0000000000 0.0000000000 -2.4670000000 0.0000000000 0.0000000000 -1.0000000000 18.7740000000
4 'crystal symmetry operation' 3_655 -x+1,y+1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 23.3240000000 0.0000000000
1.0000000000 0.0000000000 2.4670000000 0.0000000000 0.0000000000 -1.0000000000 18.7740000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2007-01-30
2 'Structure model' 1 1 2008-05-01
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-10-18
5 'Structure model' 1 4 2023-08-30
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Refinement description'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Database references'
6 5 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' software
2 5 'Structure model' chem_comp_atom
3 5 'Structure model' chem_comp_bond
4 5 'Structure model' database_2
5 5 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_database_2.pdbx_DOI'
2 5 'Structure model' '_database_2.pdbx_database_accession'
#
loop_
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
_software.pdbx_ordinal
XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling'
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 1
PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 2
REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement
http://www.ccp4.ac.uk/main.html Fortran_77 ? 3
PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction'
http://pdb.rutgers.edu/software/ C++ ? 4
XDS . ? ? ? ? 'data reduction' ? ? ? 5
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ASN N N N N 1
ASN CA C N S 2
ASN C C N N 3
ASN O O N N 4
ASN CB C N N 5
ASN CG C N N 6
ASN OD1 O N N 7
ASN ND2 N N N 8
ASN OXT O N N 9
ASN H H N N 10
ASN H2 H N N 11
ASN HA H N N 12
ASN HB2 H N N 13
ASN HB3 H N N 14
ASN HD21 H N N 15
ASN HD22 H N N 16
ASN HXT H N N 17
GLN N N N N 18
GLN CA C N S 19
GLN C C N N 20
GLN O O N N 21
GLN CB C N N 22
GLN CG C N N 23
GLN CD C N N 24
GLN OE1 O N N 25
GLN NE2 N N N 26
GLN OXT O N N 27
GLN H H N N 28
GLN H2 H N N 29
GLN HA H N N 30
GLN HB2 H N N 31
GLN HB3 H N N 32
GLN HG2 H N N 33
GLN HG3 H N N 34
GLN HE21 H N N 35
GLN HE22 H N N 36
GLN HXT H N N 37
GLY N N N N 38
GLY CA C N N 39
GLY C C N N 40
GLY O O N N 41
GLY OXT O N N 42
GLY H H N N 43
GLY H2 H N N 44
GLY HA2 H N N 45
GLY HA3 H N N 46
GLY HXT H N N 47
HOH O O N N 48
HOH H1 H N N 49
HOH H2 H N N 50
TYR N N N N 51
TYR CA C N S 52
TYR C C N N 53
TYR O O N N 54
TYR CB C N N 55
TYR CG C Y N 56
TYR CD1 C Y N 57
TYR CD2 C Y N 58
TYR CE1 C Y N 59
TYR CE2 C Y N 60
TYR CZ C Y N 61
TYR OH O N N 62
TYR OXT O N N 63
TYR H H N N 64
TYR H2 H N N 65
TYR HA H N N 66
TYR HB2 H N N 67
TYR HB3 H N N 68
TYR HD1 H N N 69
TYR HD2 H N N 70
TYR HE1 H N N 71
TYR HE2 H N N 72
TYR HH H N N 73
TYR HXT H N N 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ASN N CA sing N N 1
ASN N H sing N N 2
ASN N H2 sing N N 3
ASN CA C sing N N 4
ASN CA CB sing N N 5
ASN CA HA sing N N 6
ASN C O doub N N 7
ASN C OXT sing N N 8
ASN CB CG sing N N 9
ASN CB HB2 sing N N 10
ASN CB HB3 sing N N 11
ASN CG OD1 doub N N 12
ASN CG ND2 sing N N 13
ASN ND2 HD21 sing N N 14
ASN ND2 HD22 sing N N 15
ASN OXT HXT sing N N 16
GLN N CA sing N N 17
GLN N H sing N N 18
GLN N H2 sing N N 19
GLN CA C sing N N 20
GLN CA CB sing N N 21
GLN CA HA sing N N 22
GLN C O doub N N 23
GLN C OXT sing N N 24
GLN CB CG sing N N 25
GLN CB HB2 sing N N 26
GLN CB HB3 sing N N 27
GLN CG CD sing N N 28
GLN CG HG2 sing N N 29
GLN CG HG3 sing N N 30
GLN CD OE1 doub N N 31
GLN CD NE2 sing N N 32
GLN NE2 HE21 sing N N 33
GLN NE2 HE22 sing N N 34
GLN OXT HXT sing N N 35
GLY N CA sing N N 36
GLY N H sing N N 37
GLY N H2 sing N N 38
GLY CA C sing N N 39
GLY CA HA2 sing N N 40
GLY CA HA3 sing N N 41
GLY C O doub N N 42
GLY C OXT sing N N 43
GLY OXT HXT sing N N 44
HOH O H1 sing N N 45
HOH O H2 sing N N 46
TYR N CA sing N N 47
TYR N H sing N N 48
TYR N H2 sing N N 49
TYR CA C sing N N 50
TYR CA CB sing N N 51
TYR CA HA sing N N 52
TYR C O doub N N 53
TYR C OXT sing N N 54
TYR CB CG sing N N 55
TYR CB HB2 sing N N 56
TYR CB HB3 sing N N 57
TYR CG CD1 doub Y N 58
TYR CG CD2 sing Y N 59
TYR CD1 CE1 sing Y N 60
TYR CD1 HD1 sing N N 61
TYR CD2 CE2 doub Y N 62
TYR CD2 HD2 sing N N 63
TYR CE1 CZ doub Y N 64
TYR CE1 HE1 sing N N 65
TYR CE2 CZ sing Y N 66
TYR CE2 HE2 sing N N 67
TYR CZ OH sing N N 68
TYR OH HH sing N N 69
TYR OXT HXT sing N N 70
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1YJP
_pdbx_initial_refinement_model.details 'pdb entry 1yjp'
#