data_2OKZ
#
_entry.id 2OKZ
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2OKZ pdb_00002okz 10.2210/pdb2okz/pdb
RCSB RCSB041266 ? ?
WWPDB D_1000041266 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2007-01-30
2 'Structure model' 1 1 2008-05-01
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-10-18
5 'Structure model' 1 4 2023-12-27
6 'Structure model' 1 5 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Refinement description'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Database references'
6 6 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' software
2 5 'Structure model' chem_comp_atom
3 5 'Structure model' chem_comp_bond
4 5 'Structure model' database_2
5 6 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_database_2.pdbx_DOI'
2 5 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.entry_id 2OKZ
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2007-01-18
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 2OL9
_pdbx_database_related.details .
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Sawaya, M.R.' 1
'Sambashivan, S.' 2
'Eisenberg, D.' 3
#
_citation.id primary
_citation.title 'Atomic structures of amyloid cross-beta spines reveal varied steric zippers.'
_citation.journal_abbrev Nature
_citation.journal_volume 447
_citation.page_first 453
_citation.page_last 457
_citation.year 2007
_citation.journal_id_ASTM NATUAS
_citation.country UK
_citation.journal_id_ISSN 0028-0836
_citation.journal_id_CSD 0006
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 17468747
_citation.pdbx_database_id_DOI 10.1038/nature05695
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Sawaya, M.R.' 1 ?
primary 'Sambashivan, S.' 2 ?
primary 'Nelson, R.' 3 ?
primary 'Ivanova, M.I.' 4 ?
primary 'Sievers, S.A.' 5 ?
primary 'Apostol, M.I.' 6 ?
primary 'Thompson, M.J.' 7 ?
primary 'Balbirnie, M.' 8 ?
primary 'Wiltzius, J.J.' 9 ?
primary 'McFarlane, H.T.' 10 ?
primary 'Madsen, A.O.' 11 ?
primary 'Riekel, C.' 12 ?
primary 'Eisenberg, D.' 13 ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description
;peptide from Alzheimer's A-beta
;
_entity.formula_weight 560.707
_entity.pdbx_number_of_molecules 2
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment 'residues 35-40'
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code MVGGVV
_entity_poly.pdbx_seq_one_letter_code_can MVGGVV
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET n
1 2 VAL n
1 3 GLY n
1 4 GLY n
1 5 VAL n
1 6 VAL n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'This sequence corresponds to residues 35-40 of human A-beta peptide'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MET 1 1 1 MET MET A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 GLY 3 3 3 GLY GLY A . n
A 1 4 GLY 4 4 4 GLY GLY A . n
A 1 5 VAL 5 5 5 VAL VAL A . n
A 1 6 VAL 6 6 6 VAL VAL A . n
B 1 1 MET 1 1 1 MET MET B . n
B 1 2 VAL 2 2 2 VAL VAL B . n
B 1 3 GLY 3 3 3 GLY GLY B . n
B 1 4 GLY 4 4 4 GLY GLY B . n
B 1 5 VAL 5 5 5 VAL VAL B . n
B 1 6 VAL 6 6 6 VAL VAL B . n
#
loop_
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
_software.pdbx_ordinal
DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction'
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1
SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling'
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2
PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3
REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement
http://www.ccp4.ac.uk/main.html Fortran_77 ? 4
PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction'
http://pdb.rutgers.edu/software/ C++ ? 5
#
_cell.length_a 15.148
_cell.length_b 9.576
_cell.length_c 23.732
_cell.angle_alpha 90.000
_cell.angle_beta 96.900
_cell.angle_gamma 90.000
_cell.entry_id 2OKZ
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'P 1 21 1'
_symmetry.entry_id 2OKZ
_symmetry.Int_Tables_number 4
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
_exptl.crystals_number 1
_exptl.entry_id 2OKZ
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH 4.6
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_details
'0.2 M CaCl2, 20% isopropanol, 0.1 M Na acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K'
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MAR CCD 165 mm'
_diffrn_detector.pdbx_collection_date 2005-07-16
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator 'channel-cut Si-111 monochromator and an ellipsoidal mirror'
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.94660
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID13'
_diffrn_source.pdbx_wavelength 0.94660
_diffrn_source.pdbx_wavelength_list ?
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID13
#
_reflns.entry_id 2OKZ
_reflns.d_resolution_high 1.800
_reflns.d_resolution_low 90.000
_reflns.number_obs 650
_reflns.pdbx_Rmerge_I_obs 0.158
_reflns.pdbx_netI_over_sigmaI 4.200
_reflns.pdbx_chi_squared 1.073
_reflns.pdbx_redundancy 2.900
_reflns.percent_possible_obs 95.300
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I -3
_reflns.number_all 650
_reflns.pdbx_Rsym_value ?
_reflns.B_iso_Wilson_estimate 26.0
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.80
_reflns_shell.d_res_low 1.94
_reflns_shell.number_measured_obs ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_unique_obs ?
_reflns_shell.Rmerge_I_obs 0.447
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared 1.082
_reflns_shell.pdbx_redundancy 2.60
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 123
_reflns_shell.percent_possible_all 89.80
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 2OKZ
_refine.ls_d_res_high 1.800
_refine.ls_d_res_low 23.560
_refine.pdbx_ls_sigma_F 0.00
_refine.ls_percent_reflns_obs 93.100
_refine.ls_number_reflns_obs 648
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.ls_R_factor_obs 0.217
_refine.ls_R_factor_R_work 0.213
_refine.ls_R_factor_R_free 0.267
_refine.ls_percent_reflns_R_free 5.400
_refine.ls_number_reflns_R_free 35
_refine.B_iso_mean 11.768
_refine.aniso_B[1][1] 0.680
_refine.aniso_B[2][2] -1.770
_refine.aniso_B[3][3] 1.040
_refine.aniso_B[1][2] 0.000
_refine.aniso_B[1][3] -0.240
_refine.aniso_B[2][3] 0.000
_refine.correlation_coeff_Fo_to_Fc 0.950
_refine.correlation_coeff_Fo_to_Fc_free 0.925
_refine.pdbx_overall_ESU_R 0.198
_refine.pdbx_overall_ESU_R_Free 0.177
_refine.overall_SU_ML 0.078
_refine.overall_SU_B 2.396
_refine.solvent_model_details MASK
_refine.pdbx_solvent_vdw_probe_radii 1.400
_refine.pdbx_solvent_ion_probe_radii 0.800
_refine.pdbx_solvent_shrinkage_radii 0.800
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_ls_sigma_I ?
_refine.ls_number_reflns_all ?
_refine.ls_R_factor_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 'MVGGVV from space group P1'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.pdbx_isotropic_thermal_model ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 76
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 76
_refine_hist.d_res_high 1.800
_refine_hist.d_res_low 23.560
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 74 0.017 0.023 ? 'X-RAY DIFFRACTION' ?
r_bond_other_d 40 0.001 0.020 ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 98 1.685 2.057 ? 'X-RAY DIFFRACTION' ?
r_angle_other_deg 102 0.633 3.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 10 4.554 5.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 12 15.503 15.000 ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 14 0.087 0.200 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 78 0.004 0.020 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_other 10 0.000 0.020 ? 'X-RAY DIFFRACTION' ?
r_nbd_refined 6 0.146 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbd_other 26 0.204 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined 34 0.142 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbtor_other 50 0.095 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 4 0.299 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other 11 0.252 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 1 0.093 0.200 ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 67 6.037 2.000 ? 'X-RAY DIFFRACTION' ?
r_mcbond_other 26 2.150 2.000 ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 88 5.903 3.000 ? 'X-RAY DIFFRACTION' ?
r_scbond_it 18 5.729 2.000 ? 'X-RAY DIFFRACTION' ?
r_scangle_it 10 7.162 3.000 ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.d_res_high 1.800
_refine_ls_shell.d_res_low 1.847
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.percent_reflns_obs 52.080
_refine_ls_shell.number_reflns_R_work 24
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.163
_refine_ls_shell.R_factor_R_free 0.138
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 1
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs 25
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 2OKZ
_struct.title
;MVGGVV peptide derived from Alzheimer's A-beta
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2OKZ
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
_struct_keywords.text 'steric zipper, PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 2OKZ
_struct_ref.pdbx_db_accession 2OKZ
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 2OKZ A 1 ? 6 ? 2OKZ 1 ? 6 ? 1 6
2 1 2OKZ B 1 ? 6 ? 2OKZ 1 ? 6 ? 1 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A
1 3 B
1 2 A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'crystal symmetry operation' 2_555 -x,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 4.7880000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
2 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 2_556 -x,y+1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 -2.8510874592 0.0000000000 1.0000000000
0.0000000000 4.7880000000 0.0000000000 0.0000000000 -1.0000000000 23.5601172387
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
GLY N N N N 1
GLY CA C N N 2
GLY C C N N 3
GLY O O N N 4
GLY OXT O N N 5
GLY H H N N 6
GLY H2 H N N 7
GLY HA2 H N N 8
GLY HA3 H N N 9
GLY HXT H N N 10
MET N N N N 11
MET CA C N S 12
MET C C N N 13
MET O O N N 14
MET CB C N N 15
MET CG C N N 16
MET SD S N N 17
MET CE C N N 18
MET OXT O N N 19
MET H H N N 20
MET H2 H N N 21
MET HA H N N 22
MET HB2 H N N 23
MET HB3 H N N 24
MET HG2 H N N 25
MET HG3 H N N 26
MET HE1 H N N 27
MET HE2 H N N 28
MET HE3 H N N 29
MET HXT H N N 30
VAL N N N N 31
VAL CA C N S 32
VAL C C N N 33
VAL O O N N 34
VAL CB C N N 35
VAL CG1 C N N 36
VAL CG2 C N N 37
VAL OXT O N N 38
VAL H H N N 39
VAL H2 H N N 40
VAL HA H N N 41
VAL HB H N N 42
VAL HG11 H N N 43
VAL HG12 H N N 44
VAL HG13 H N N 45
VAL HG21 H N N 46
VAL HG22 H N N 47
VAL HG23 H N N 48
VAL HXT H N N 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GLY N CA sing N N 1
GLY N H sing N N 2
GLY N H2 sing N N 3
GLY CA C sing N N 4
GLY CA HA2 sing N N 5
GLY CA HA3 sing N N 6
GLY C O doub N N 7
GLY C OXT sing N N 8
GLY OXT HXT sing N N 9
MET N CA sing N N 10
MET N H sing N N 11
MET N H2 sing N N 12
MET CA C sing N N 13
MET CA CB sing N N 14
MET CA HA sing N N 15
MET C O doub N N 16
MET C OXT sing N N 17
MET CB CG sing N N 18
MET CB HB2 sing N N 19
MET CB HB3 sing N N 20
MET CG SD sing N N 21
MET CG HG2 sing N N 22
MET CG HG3 sing N N 23
MET SD CE sing N N 24
MET CE HE1 sing N N 25
MET CE HE2 sing N N 26
MET CE HE3 sing N N 27
MET OXT HXT sing N N 28
VAL N CA sing N N 29
VAL N H sing N N 30
VAL N H2 sing N N 31
VAL CA C sing N N 32
VAL CA CB sing N N 33
VAL CA HA sing N N 34
VAL C O doub N N 35
VAL C OXT sing N N 36
VAL CB CG1 sing N N 37
VAL CB CG2 sing N N 38
VAL CB HB sing N N 39
VAL CG1 HG11 sing N N 40
VAL CG1 HG12 sing N N 41
VAL CG1 HG13 sing N N 42
VAL CG2 HG21 sing N N 43
VAL CG2 HG22 sing N N 44
VAL CG2 HG23 sing N N 45
VAL OXT HXT sing N N 46
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name Other
_pdbx_initial_refinement_model.details 'MVGGVV from space group P1'
#
_atom_sites.entry_id 2OKZ
_atom_sites.fract_transf_matrix[1][1] 0.066015
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.007990
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.104428
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.042445
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . MET A 1 1 ? 7.404 -0.773 -5.911 1.00 21.48 ? 1 MET A N 1
ATOM 2 C CA . MET A 1 1 ? 6.021 -0.284 -5.672 1.00 24.02 ? 1 MET A CA 1
ATOM 3 C C . MET A 1 1 ? 5.481 -1.007 -4.467 1.00 8.69 ? 1 MET A C 1
ATOM 4 O O . MET A 1 1 ? 5.648 -2.221 -4.335 1.00 17.20 ? 1 MET A O 1
ATOM 5 C CB . MET A 1 1 ? 5.111 -0.597 -6.844 1.00 19.41 ? 1 MET A CB 1
ATOM 6 C CG . MET A 1 1 ? 5.311 0.216 -8.048 1.00 30.39 ? 1 MET A CG 1
ATOM 7 S SD . MET A 1 1 ? 5.118 -0.854 -9.477 1.00 32.04 ? 1 MET A SD 1
ATOM 8 C CE . MET A 1 1 ? 6.638 -1.802 -9.418 1.00 34.96 ? 1 MET A CE 1
ATOM 9 N N . VAL A 1 2 ? 4.821 -0.251 -3.611 1.00 16.38 ? 2 VAL A N 1
ATOM 10 C CA . VAL A 1 2 ? 4.242 -0.792 -2.406 1.00 10.92 ? 2 VAL A CA 1
ATOM 11 C C . VAL A 1 2 ? 2.965 -0.047 -2.105 1.00 7.22 ? 2 VAL A C 1
ATOM 12 O O . VAL A 1 2 ? 2.929 1.185 -2.135 1.00 8.93 ? 2 VAL A O 1
ATOM 13 C CB . VAL A 1 2 ? 5.199 -0.636 -1.220 1.00 13.26 ? 2 VAL A CB 1
ATOM 14 C CG1 . VAL A 1 2 ? 4.505 -1.081 0.070 1.00 17.40 ? 2 VAL A CG1 1
ATOM 15 C CG2 . VAL A 1 2 ? 6.468 -1.472 -1.442 1.00 16.10 ? 2 VAL A CG2 1
ATOM 16 N N . GLY A 1 3 ? 1.929 -0.822 -1.798 1.00 16.42 ? 3 GLY A N 1
ATOM 17 C CA . GLY A 1 3 ? 0.655 -0.256 -1.384 1.00 12.58 ? 3 GLY A CA 1
ATOM 18 C C . GLY A 1 3 ? 0.144 -0.978 -0.142 1.00 15.52 ? 3 GLY A C 1
ATOM 19 O O . GLY A 1 3 ? 0.363 -2.214 0.037 1.00 16.55 ? 3 GLY A O 1
ATOM 20 N N . GLY A 1 4 ? -0.561 -0.209 0.697 1.00 18.54 ? 4 GLY A N 1
ATOM 21 C CA . GLY A 1 4 ? -1.207 -0.725 1.919 1.00 16.07 ? 4 GLY A CA 1
ATOM 22 C C . GLY A 1 4 ? -2.578 -0.101 2.162 1.00 15.53 ? 4 GLY A C 1
ATOM 23 O O . GLY A 1 4 ? -2.749 1.076 1.930 1.00 15.55 ? 4 GLY A O 1
ATOM 24 N N . VAL A 1 5 ? -3.548 -0.909 2.597 1.00 15.79 ? 5 VAL A N 1
ATOM 25 C CA . VAL A 1 5 ? -4.879 -0.425 3.004 1.00 19.25 ? 5 VAL A CA 1
ATOM 26 C C . VAL A 1 5 ? -5.300 -0.997 4.359 1.00 20.27 ? 5 VAL A C 1
ATOM 27 O O . VAL A 1 5 ? -5.214 -2.208 4.551 1.00 15.64 ? 5 VAL A O 1
ATOM 28 C CB . VAL A 1 5 ? -5.951 -0.877 2.002 1.00 16.87 ? 5 VAL A CB 1
ATOM 29 C CG1 . VAL A 1 5 ? -7.305 -0.248 2.339 1.00 19.47 ? 5 VAL A CG1 1
ATOM 30 C CG2 . VAL A 1 5 ? -5.546 -0.489 0.589 1.00 23.64 ? 5 VAL A CG2 1
ATOM 31 N N . VAL A 1 6 ? -5.765 -0.138 5.277 1.00 22.28 ? 6 VAL A N 1
ATOM 32 C CA . VAL A 1 6 ? -6.309 -0.591 6.561 1.00 16.50 ? 6 VAL A CA 1
ATOM 33 C C . VAL A 1 6 ? -7.696 0.054 6.746 1.00 18.32 ? 6 VAL A C 1
ATOM 34 O O . VAL A 1 6 ? -7.894 1.272 6.728 1.00 16.00 ? 6 VAL A O 1
ATOM 35 C CB . VAL A 1 6 ? -5.403 -0.257 7.765 1.00 18.47 ? 6 VAL A CB 1
ATOM 36 C CG1 . VAL A 1 6 ? -6.004 -0.832 9.018 1.00 15.91 ? 6 VAL A CG1 1
ATOM 37 C CG2 . VAL A 1 6 ? -3.963 -0.793 7.557 1.00 16.99 ? 6 VAL A CG2 1
ATOM 38 O OXT . VAL A 1 6 ? -8.671 -0.662 6.914 1.00 27.33 ? 6 VAL A OXT 1
ATOM 39 N N . MET B 1 1 ? -7.492 -2.481 16.959 1.00 19.26 ? 1 MET B N 1
ATOM 40 C CA . MET B 1 1 ? -6.427 -3.338 16.428 1.00 11.32 ? 1 MET B CA 1
ATOM 41 C C . MET B 1 1 ? -5.107 -2.620 16.548 1.00 10.60 ? 1 MET B C 1
ATOM 42 O O . MET B 1 1 ? -5.075 -1.396 16.650 1.00 18.25 ? 1 MET B O 1
ATOM 43 C CB . MET B 1 1 ? -6.698 -3.691 14.973 1.00 19.94 ? 1 MET B CB 1
ATOM 44 C CG . MET B 1 1 ? -7.000 -2.523 14.107 1.00 13.73 ? 1 MET B CG 1
ATOM 45 S SD . MET B 1 1 ? -6.695 -2.869 12.341 1.00 27.70 ? 1 MET B SD 1
ATOM 46 C CE . MET B 1 1 ? -4.891 -3.074 12.368 1.00 25.72 ? 1 MET B CE 1
ATOM 47 N N . VAL B 1 2 ? -4.042 -3.399 16.569 1.00 15.10 ? 2 VAL B N 1
ATOM 48 C CA . VAL B 1 2 ? -2.682 -2.864 16.567 1.00 7.91 ? 2 VAL B CA 1
ATOM 49 C C . VAL B 1 2 ? -1.993 -3.615 15.419 1.00 14.49 ? 2 VAL B C 1
ATOM 50 O O . VAL B 1 2 ? -1.911 -4.858 15.407 1.00 11.46 ? 2 VAL B O 1
ATOM 51 C CB . VAL B 1 2 ? -1.988 -3.136 17.908 1.00 12.71 ? 2 VAL B CB 1
ATOM 52 C CG1 . VAL B 1 2 ? -0.523 -2.582 17.936 1.00 13.52 ? 2 VAL B CG1 1
ATOM 53 C CG2 . VAL B 1 2 ? -2.817 -2.604 19.053 1.00 20.92 ? 2 VAL B CG2 1
ATOM 54 N N . GLY B 1 3 ? -1.532 -2.861 14.432 1.00 18.90 ? 3 GLY B N 1
ATOM 55 C CA . GLY B 1 3 ? -0.925 -3.455 13.248 1.00 15.93 ? 3 GLY B CA 1
ATOM 56 C C . GLY B 1 3 ? -1.357 -2.758 11.989 1.00 8.27 ? 3 GLY B C 1
ATOM 57 O O . GLY B 1 3 ? -1.637 -1.530 11.971 1.00 14.18 ? 3 GLY B O 1
ATOM 58 N N . GLY B 1 4 ? -1.453 -3.548 10.932 1.00 16.53 ? 4 GLY B N 1
ATOM 59 C CA . GLY B 1 4 ? -1.823 -3.062 9.616 1.00 13.41 ? 4 GLY B CA 1
ATOM 60 C C . GLY B 1 4 ? -0.885 -3.652 8.597 1.00 9.84 ? 4 GLY B C 1
ATOM 61 O O . GLY B 1 4 ? -0.710 -4.862 8.541 1.00 19.62 ? 4 GLY B O 1
ATOM 62 N N . VAL B 1 5 ? -0.278 -2.790 7.795 1.00 13.70 ? 5 VAL B N 1
ATOM 63 C CA . VAL B 1 5 ? 0.698 -3.220 6.830 1.00 6.73 ? 5 VAL B CA 1
ATOM 64 C C . VAL B 1 5 ? 2.008 -2.612 7.300 1.00 7.39 ? 5 VAL B C 1
ATOM 65 O O . VAL B 1 5 ? 2.124 -1.397 7.361 1.00 18.84 ? 5 VAL B O 1
ATOM 66 C CB . VAL B 1 5 ? 0.315 -2.756 5.437 1.00 14.34 ? 5 VAL B CB 1
ATOM 67 C CG1 . VAL B 1 5 ? 1.277 -3.308 4.440 1.00 6.75 ? 5 VAL B CG1 1
ATOM 68 C CG2 . VAL B 1 5 ? -1.121 -3.204 5.143 1.00 14.05 ? 5 VAL B CG2 1
ATOM 69 N N . VAL B 1 6 ? 2.965 -3.457 7.664 1.00 13.23 ? 6 VAL B N 1
ATOM 70 C CA . VAL B 1 6 ? 4.237 -2.975 8.281 1.00 12.21 ? 6 VAL B CA 1
ATOM 71 C C . VAL B 1 6 ? 5.452 -3.679 7.670 1.00 16.59 ? 6 VAL B C 1
ATOM 72 O O . VAL B 1 6 ? 5.474 -4.896 7.519 1.00 24.43 ? 6 VAL B O 1
ATOM 73 C CB . VAL B 1 6 ? 4.227 -3.251 9.788 1.00 21.27 ? 6 VAL B CB 1
ATOM 74 C CG1 . VAL B 1 6 ? 5.374 -2.529 10.464 1.00 18.90 ? 6 VAL B CG1 1
ATOM 75 C CG2 . VAL B 1 6 ? 2.852 -2.845 10.411 1.00 19.43 ? 6 VAL B CG2 1
ATOM 76 O OXT . VAL B 1 6 ? 6.466 -3.069 7.355 1.00 25.21 ? 6 VAL B OXT 1
#