data_2HC7
#
_entry.id 2HC7
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.377
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2HC7 pdb_00002hc7 10.2210/pdb2hc7/pdb
NDB AD0065 ? ?
RCSB RCSB038185 ? ?
WWPDB D_1000038185 ? ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 2HC7
_pdbx_database_status.recvd_initial_deposition_date 2006-06-15
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Jiang, J.' 1
'Sheng, J.' 2
'Huang, Z.' 3
#
_citation.id primary
_citation.title
;Crystal Structure of 2'-Selenium modified T A-DNA G(TSe)GTACAC
;
_citation.journal_abbrev 'TO BE PUBLISHED'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year ?
_citation.journal_id_ASTM ?
_citation.country ?
_citation.journal_id_ISSN ?
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Jiang, J.' 1 ?
primary 'Sheng, J.' 2 ?
primary 'Huang, Z.' 3 ?
#
_cell.entry_id 2HC7
_cell.length_a 42.221
_cell.length_b 42.221
_cell.length_c 24.026
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 2HC7
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*GP*(2ST)P*GP*TP*AP*CP*AP*C)-3'" 2519.604 1 ? ? ? ?
2 water nat water 18.015 43 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(2ST)(DG)(DT)(DA)(DC)(DA)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GTGTACAC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 2ST n
1 3 DG n
1 4 DT n
1 5 DA n
1 6 DC n
1 7 DA n
1 8 DC n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'SOLID PHASE SYNTHESIS VIA PHOSPHORAMIDITE'
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 2HC7
_struct_ref.pdbx_db_accession 2HC7
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 2HC7
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 2HC7
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
2ST 'DNA linking' n
;5-METHYL-2'-SE-METHYL-2'-SELENOURIDINE 5'-(DIHYDROGEN PHOSPHATE)
;
? 'C11 H17 N2 O8 P Se' 415.195
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
_exptl.entry_id 2HC7
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.05
_exptl_crystal.density_percent_sol 39.91
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.0
_exptl_crystal_grow.pdbx_details
;10% MPD, 40 mM Na Cacodylate, 12 mM Sperimine tetra-HCI, 80 mM Sodium Chloride and 20 mM Magnesium Chloride, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
;
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 MPD ? ? ?
1 2 1 'Na Cacodylate' ? ? ?
1 3 1 'Sperimine tetra-HCI' ? ? ?
1 4 1 'Sodium Chloride' ? ? ?
1 5 1 'Magnesium Chloride' ? ? ?
1 6 1 H2O ? ? ?
1 7 2 MPD ? ? ?
1 8 2 'Na Cacodylate' ? ? ?
1 9 2 'Sodium Chloride' ? ? ?
1 10 2 'Magnesium Chloride' ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 210'
_diffrn_detector.pdbx_collection_date 2006-06-01
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator Si
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.1
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'NSLS BEAMLINE X12C'
_diffrn_source.pdbx_synchrotron_site NSLS
_diffrn_source.pdbx_synchrotron_beamline X12C
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.1
#
_reflns.entry_id 2HC7
_reflns.observed_criterion_sigma_I 1
_reflns.observed_criterion_sigma_F 1
_reflns.d_resolution_low 40
_reflns.d_resolution_high 1.4
_reflns.number_obs 4577
_reflns.number_all 4577
_reflns.percent_possible_obs 98.8
_reflns.pdbx_Rmerge_I_obs 0.036
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 13.1
_reflns.B_iso_Wilson_estimate 16.1
_reflns.pdbx_redundancy 12.7
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.40
_reflns_shell.d_res_low 1.45
_reflns_shell.percent_possible_all 92.3
_reflns_shell.Rmerge_I_obs 0.343
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 2.1
_reflns_shell.pdbx_redundancy 10.0
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 2HC7
_refine.ls_number_reflns_obs 4252
_refine.ls_number_reflns_all 4252
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.5
_refine.pdbx_data_cutoff_high_absF 711051.17
_refine.pdbx_data_cutoff_low_absF 0.000000
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 18.72
_refine.ls_d_res_high 1.40
_refine.ls_percent_reflns_obs 92.8
_refine.ls_R_factor_obs 0.17
_refine.ls_R_factor_all 0.172
_refine.ls_R_factor_R_work 0.17
_refine.ls_R_factor_R_free 0.187
_refine.ls_R_factor_R_free_error 0.009
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 10.2
_refine.ls_number_reflns_R_free 435
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean 18.5
_refine.aniso_B[1][1] -0.86
_refine.aniso_B[2][2] -0.86
_refine.aniso_B[3][3] 1.71
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'FLAT MODEL'
_refine.solvent_model_param_ksol 0.34
_refine.solvent_model_param_bsol 45.0525
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model 'pdb entry 1Z7I'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model RESTRAINED
_refine.pdbx_stereochemistry_target_values DNA-RNA
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 2HC7
_refine_analyze.Luzzati_coordinate_error_obs 0.13
_refine_analyze.Luzzati_sigma_a_obs 0.08
_refine_analyze.Luzzati_d_res_low_obs 5.00
_refine_analyze.Luzzati_coordinate_error_free 0.15
_refine_analyze.Luzzati_sigma_a_free 0.08
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 163
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 43
_refine_hist.number_atoms_total 206
_refine_hist.d_res_high 1.40
_refine_hist.d_res_low 18.72
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
c_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ?
c_angle_deg 1.9 ? ? ? 'X-RAY DIFFRACTION' ?
c_dihedral_angle_d 34.3 ? ? ? 'X-RAY DIFFRACTION' ?
c_improper_angle_d 2.04 ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 6
_refine_ls_shell.d_res_high 1.40
_refine_ls_shell.d_res_low 1.49
_refine_ls_shell.number_reflns_R_work 492
_refine_ls_shell.R_factor_R_work 0.221
_refine_ls_shell.percent_reflns_obs 73.7
_refine_ls_shell.R_factor_R_free 0.244
_refine_ls_shell.R_factor_R_free_error 0.034
_refine_ls_shell.percent_reflns_R_free 9.6
_refine_ls_shell.number_reflns_R_free 52
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs 492
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
loop_
_pdbx_xplor_file.serial_no
_pdbx_xplor_file.param_file
_pdbx_xplor_file.topol_file
_pdbx_xplor_file.pdbx_refine_id
1 protein_rep.param protein.top 'X-RAY DIFFRACTION'
2 water_rep.param dna-rna.top 'X-RAY DIFFRACTION'
3 ion.param water.top 'X-RAY DIFFRACTION'
4 dna-rna_ums.par ion.top 'X-RAY DIFFRACTION'
5 cac.par ums.top 'X-RAY DIFFRACTION'
#
_struct.entry_id 2HC7
_struct.title
;2'-selenium-T A-DNA [G(TSe)GTACAC]
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2HC7
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text
;SE-DNA, 2'-SE-T-DNA, DNA
;
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A 2ST 2 P ? ? A DG 1 A 2ST 2 1_555 ? ? ? ? ? ? ? 1.611 ? ?
covale2 covale both ? A 2ST 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A 2ST 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.619 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A 2ST 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A 2ST 2 A DA 7 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A 2ST 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A 2ST 2 A DA 7 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 4 A DA 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 4 A DA 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 5 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 5 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A 2ST 2 N3 ? ? A DA 7 A 2ST 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A 2ST 2 O4 ? ? A DA 7 A 2ST 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_database_PDB_matrix.entry_id 2HC7
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 2HC7
_atom_sites.fract_transf_matrix[1][1] 0.023685
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023685
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.041622
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
SE
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 13.747 19.113 11.451 1.00 15.17 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 13.813 17.697 11.239 1.00 14.19 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 12.653 17.132 10.445 1.00 13.72 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 11.443 17.287 11.238 1.00 13.82 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 12.326 17.852 9.134 1.00 13.29 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 13.078 17.334 8.037 1.00 14.52 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 10.830 17.607 8.978 1.00 13.60 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 10.309 17.542 10.388 1.00 12.25 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 9.921 18.913 10.796 1.00 12.95 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 10.637 19.853 11.497 1.00 12.88 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 9.993 20.985 11.648 1.00 13.37 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 8.778 20.779 11.005 1.00 13.33 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 7.622 21.659 10.820 1.00 14.83 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 7.473 22.820 11.234 1.00 16.47 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 6.598 21.021 10.120 1.00 15.48 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 6.651 19.735 9.655 1.00 16.01 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 5.578 19.285 9.015 1.00 17.73 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 7.702 18.923 9.810 1.00 14.60 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 8.715 19.510 10.481 1.00 13.15 ? 1 DG A C4 1
HETATM 20 P P . 2ST A 1 2 ? 13.492 18.302 6.818 1.00 15.26 ? 2 2ST A P 1
HETATM 21 O OP1 . 2ST A 1 2 ? 14.306 17.452 5.940 1.00 17.23 ? 2 2ST A OP1 1
HETATM 22 O OP2 . 2ST A 1 2 ? 14.011 19.605 7.325 1.00 16.64 ? 2 2ST A OP2 1
HETATM 23 O "O5'" . 2ST A 1 2 ? 12.128 18.602 6.054 1.00 15.20 ? 2 2ST A "O5'" 1
HETATM 24 N N1 . 2ST A 1 2 ? 8.711 20.572 6.456 1.00 14.59 ? 2 2ST A N1 1
HETATM 25 C C6 . 2ST A 1 2 ? 9.940 20.729 7.083 1.00 14.61 ? 2 2ST A C6 1
HETATM 26 C C2 . 2ST A 1 2 ? 7.716 21.533 6.581 1.00 15.87 ? 2 2ST A C2 1
HETATM 27 O O2 . 2ST A 1 2 ? 6.658 21.447 5.980 1.00 17.16 ? 2 2ST A O2 1
HETATM 28 N N3 . 2ST A 1 2 ? 7.993 22.604 7.392 1.00 13.56 ? 2 2ST A N3 1
HETATM 29 C C4 . 2ST A 1 2 ? 9.167 22.860 8.082 1.00 14.35 ? 2 2ST A C4 1
HETATM 30 O O4 . 2ST A 1 2 ? 9.259 23.857 8.783 1.00 14.32 ? 2 2ST A O4 1
HETATM 31 C C5 . 2ST A 1 2 ? 10.242 21.831 7.892 1.00 14.34 ? 2 2ST A C5 1
HETATM 32 C C5A . 2ST A 1 2 ? 11.566 22.027 8.577 1.00 14.88 ? 2 2ST A C5A 1
HETATM 33 C "C2'" . 2ST A 1 2 ? 8.678 19.771 4.177 1.00 16.05 ? 2 2ST A "C2'" 1
HETATM 34 C "C5'" . 2ST A 1 2 ? 11.439 17.552 5.404 1.00 15.22 ? 2 2ST A "C5'" 1
HETATM 35 C "C4'" . 2ST A 1 2 ? 10.121 18.045 4.868 1.00 14.81 ? 2 2ST A "C4'" 1
HETATM 36 O "O4'" . 2ST A 1 2 ? 9.296 18.390 6.002 1.00 13.77 ? 2 2ST A "O4'" 1
HETATM 37 C "C1'" . 2ST A 1 2 ? 8.347 19.399 5.594 1.00 15.02 ? 2 2ST A "C1'" 1
HETATM 38 C "C3'" . 2ST A 1 2 ? 10.134 19.347 4.096 1.00 16.90 ? 2 2ST A "C3'" 1
HETATM 39 SE SE . 2ST A 1 2 ? 7.479 18.552 3.031 0.93 16.90 ? 2 2ST A SE 1
HETATM 40 C "CA'" . 2ST A 1 2 ? 5.814 19.584 3.086 1.00 19.14 ? 2 2ST A "CA'" 1
HETATM 41 O "O3'" . 2ST A 1 2 ? 10.480 19.203 2.780 1.00 19.32 ? 2 2ST A "O3'" 1
ATOM 42 P P . DG A 1 3 ? 11.309 20.402 2.075 1.00 21.88 ? 3 DG A P 1
ATOM 43 O OP1 . DG A 1 3 ? 11.740 19.666 0.952 1.00 21.10 ? 3 DG A OP1 1
ATOM 44 O OP2 . DG A 1 3 ? 12.270 21.027 3.005 1.00 22.30 ? 3 DG A OP2 1
ATOM 45 O "O5'" . DG A 1 3 ? 10.276 21.558 1.720 1.00 21.22 ? 3 DG A "O5'" 1
ATOM 46 C "C5'" . DG A 1 3 ? 9.195 21.257 0.899 1.00 20.79 ? 3 DG A "C5'" 1
ATOM 47 C "C4'" . DG A 1 3 ? 8.113 22.289 1.061 1.00 18.42 ? 3 DG A "C4'" 1
ATOM 48 O "O4'" . DG A 1 3 ? 7.817 22.326 2.486 1.00 18.50 ? 3 DG A "O4'" 1
ATOM 49 C "C3'" . DG A 1 3 ? 8.455 23.738 0.718 1.00 18.08 ? 3 DG A "C3'" 1
ATOM 50 O "O3'" . DG A 1 3 ? 8.252 24.032 -0.672 1.00 17.08 ? 3 DG A "O3'" 1
ATOM 51 C "C2'" . DG A 1 3 ? 7.450 24.493 1.573 1.00 17.59 ? 3 DG A "C2'" 1
ATOM 52 C "C1'" . DG A 1 3 ? 7.181 23.578 2.774 1.00 15.77 ? 3 DG A "C1'" 1
ATOM 53 N N9 . DG A 1 3 ? 8.030 24.126 3.857 1.00 14.62 ? 3 DG A N9 1
ATOM 54 C C8 . DG A 1 3 ? 9.267 23.750 4.314 1.00 15.31 ? 3 DG A C8 1
ATOM 55 N N7 . DG A 1 3 ? 9.711 24.499 5.294 1.00 14.78 ? 3 DG A N7 1
ATOM 56 C C5 . DG A 1 3 ? 8.694 25.437 5.497 1.00 12.54 ? 3 DG A C5 1
ATOM 57 C C6 . DG A 1 3 ? 8.569 26.554 6.457 1.00 11.74 ? 3 DG A C6 1
ATOM 58 O O6 . DG A 1 3 ? 9.337 26.904 7.359 1.00 13.34 ? 3 DG A O6 1
ATOM 59 N N1 . DG A 1 3 ? 7.368 27.240 6.278 1.00 12.59 ? 3 DG A N1 1
ATOM 60 C C2 . DG A 1 3 ? 6.417 26.933 5.348 1.00 12.28 ? 3 DG A C2 1
ATOM 61 N N2 . DG A 1 3 ? 5.311 27.715 5.335 1.00 13.69 ? 3 DG A N2 1
ATOM 62 N N3 . DG A 1 3 ? 6.514 25.926 4.483 1.00 13.97 ? 3 DG A N3 1
ATOM 63 C C4 . DG A 1 3 ? 7.661 25.229 4.624 1.00 13.22 ? 3 DG A C4 1
ATOM 64 P P . DT A 1 4 ? 8.884 25.374 -1.298 1.00 17.76 ? 4 DT A P 1
ATOM 65 O OP1 . DT A 1 4 ? 8.702 25.175 -2.778 1.00 20.95 ? 4 DT A OP1 1
ATOM 66 O OP2 . DT A 1 4 ? 10.179 25.681 -0.776 1.00 18.51 ? 4 DT A OP2 1
ATOM 67 O "O5'" . DT A 1 4 ? 7.910 26.528 -0.756 1.00 16.35 ? 4 DT A "O5'" 1
ATOM 68 C "C5'" . DT A 1 4 ? 6.531 26.564 -1.107 1.00 16.27 ? 4 DT A "C5'" 1
ATOM 69 C "C4'" . DT A 1 4 ? 5.856 27.767 -0.487 1.00 15.10 ? 4 DT A "C4'" 1
ATOM 70 O "O4'" . DT A 1 4 ? 5.949 27.637 0.962 1.00 14.35 ? 4 DT A "O4'" 1
ATOM 71 C "C3'" . DT A 1 4 ? 6.565 29.090 -0.778 1.00 15.14 ? 4 DT A "C3'" 1
ATOM 72 O "O3'" . DT A 1 4 ? 6.070 29.653 -1.980 1.00 16.02 ? 4 DT A "O3'" 1
ATOM 73 C "C2'" . DT A 1 4 ? 6.169 29.945 0.418 1.00 14.11 ? 4 DT A "C2'" 1
ATOM 74 C "C1'" . DT A 1 4 ? 6.005 28.955 1.553 1.00 13.39 ? 4 DT A "C1'" 1
ATOM 75 N N1 . DT A 1 4 ? 7.286 28.868 2.381 1.00 12.43 ? 4 DT A N1 1
ATOM 76 C C2 . DT A 1 4 ? 7.383 29.779 3.425 1.00 11.72 ? 4 DT A C2 1
ATOM 77 O O2 . DT A 1 4 ? 6.547 30.656 3.601 1.00 12.68 ? 4 DT A O2 1
ATOM 78 N N3 . DT A 1 4 ? 8.501 29.678 4.226 1.00 11.64 ? 4 DT A N3 1
ATOM 79 C C4 . DT A 1 4 ? 9.560 28.782 4.062 1.00 11.60 ? 4 DT A C4 1
ATOM 80 O O4 . DT A 1 4 ? 10.490 28.778 4.842 1.00 12.66 ? 4 DT A O4 1
ATOM 81 C C5 . DT A 1 4 ? 9.445 27.875 2.896 1.00 11.87 ? 4 DT A C5 1
ATOM 82 C C7 . DT A 1 4 ? 10.532 26.902 2.605 1.00 13.87 ? 4 DT A C7 1
ATOM 83 C C6 . DT A 1 4 ? 8.309 27.959 2.118 1.00 12.81 ? 4 DT A C6 1
ATOM 84 P P . DA A 1 5 ? 6.907 30.795 -2.704 1.00 17.81 ? 5 DA A P 1
ATOM 85 O OP1 . DA A 1 5 ? 6.276 30.854 -4.063 1.00 21.22 ? 5 DA A OP1 1
ATOM 86 O OP2 . DA A 1 5 ? 8.337 30.558 -2.562 1.00 20.16 ? 5 DA A OP2 1
ATOM 87 O "O5'" . DA A 1 5 ? 6.511 32.078 -1.841 1.00 15.52 ? 5 DA A "O5'" 1
ATOM 88 C "C5'" . DA A 1 5 ? 7.449 33.085 -1.561 1.00 15.03 ? 5 DA A "C5'" 1
ATOM 89 C "C4'" . DA A 1 5 ? 6.862 33.991 -0.505 1.00 12.86 ? 5 DA A "C4'" 1
ATOM 90 O "O4'" . DA A 1 5 ? 6.757 33.180 0.697 1.00 13.89 ? 5 DA A "O4'" 1
ATOM 91 C "C3'" . DA A 1 5 ? 7.724 35.167 -0.107 1.00 14.12 ? 5 DA A "C3'" 1
ATOM 92 O "O3'" . DA A 1 5 ? 7.358 36.295 -0.872 1.00 14.47 ? 5 DA A "O3'" 1
ATOM 93 C "C2'" . DA A 1 5 ? 7.486 35.332 1.377 1.00 13.47 ? 5 DA A "C2'" 1
ATOM 94 C "C1'" . DA A 1 5 ? 7.241 33.896 1.821 1.00 11.77 ? 5 DA A "C1'" 1
ATOM 95 N N9 . DA A 1 5 ? 8.491 33.234 2.256 1.00 11.00 ? 5 DA A N9 1
ATOM 96 C C8 . DA A 1 5 ? 9.155 32.211 1.614 1.00 11.99 ? 5 DA A C8 1
ATOM 97 N N7 . DA A 1 5 ? 10.189 31.765 2.266 1.00 11.53 ? 5 DA A N7 1
ATOM 98 C C5 . DA A 1 5 ? 10.241 32.578 3.408 1.00 10.17 ? 5 DA A C5 1
ATOM 99 C C6 . DA A 1 5 ? 11.096 32.602 4.534 1.00 10.17 ? 5 DA A C6 1
ATOM 100 N N6 . DA A 1 5 ? 12.095 31.743 4.729 1.00 10.80 ? 5 DA A N6 1
ATOM 101 N N1 . DA A 1 5 ? 10.879 33.547 5.464 1.00 10.53 ? 5 DA A N1 1
ATOM 102 C C2 . DA A 1 5 ? 9.855 34.409 5.298 1.00 11.92 ? 5 DA A C2 1
ATOM 103 N N3 . DA A 1 5 ? 8.959 34.461 4.292 1.00 11.36 ? 5 DA A N3 1
ATOM 104 C C4 . DA A 1 5 ? 9.218 33.500 3.387 1.00 10.88 ? 5 DA A C4 1
ATOM 105 P P . DC A 1 6 ? 8.533 37.239 -1.417 1.00 15.61 ? 6 DC A P 1
ATOM 106 O OP1 . DC A 1 6 ? 7.836 38.307 -2.212 1.00 17.70 ? 6 DC A OP1 1
ATOM 107 O OP2 . DC A 1 6 ? 9.639 36.511 -1.994 1.00 16.42 ? 6 DC A OP2 1
ATOM 108 O "O5'" . DC A 1 6 ? 9.105 37.908 -0.091 1.00 15.09 ? 6 DC A "O5'" 1
ATOM 109 C "C5'" . DC A 1 6 ? 8.302 38.786 0.684 1.00 13.38 ? 6 DC A "C5'" 1
ATOM 110 C "C4'" . DC A 1 6 ? 8.998 39.168 1.967 1.00 14.85 ? 6 DC A "C4'" 1
ATOM 111 O "O4'" . DC A 1 6 ? 9.150 37.966 2.762 1.00 14.32 ? 6 DC A "O4'" 1
ATOM 112 C "C3'" . DC A 1 6 ? 10.420 39.642 1.775 1.00 15.50 ? 6 DC A "C3'" 1
ATOM 113 O "O3'" . DC A 1 6 ? 10.493 41.023 1.455 1.00 16.73 ? 6 DC A "O3'" 1
ATOM 114 C "C2'" . DC A 1 6 ? 11.033 39.317 3.124 1.00 14.67 ? 6 DC A "C2'" 1
ATOM 115 C "C1'" . DC A 1 6 ? 10.323 38.037 3.544 1.00 13.99 ? 6 DC A "C1'" 1
ATOM 116 N N1 . DC A 1 6 ? 11.207 36.914 3.150 1.00 12.61 ? 6 DC A N1 1
ATOM 117 C C2 . DC A 1 6 ? 12.218 36.543 4.051 1.00 13.65 ? 6 DC A C2 1
ATOM 118 O O2 . DC A 1 6 ? 12.375 37.227 5.055 1.00 13.88 ? 6 DC A O2 1
ATOM 119 N N3 . DC A 1 6 ? 12.988 35.476 3.791 1.00 12.57 ? 6 DC A N3 1
ATOM 120 C C4 . DC A 1 6 ? 12.830 34.786 2.662 1.00 12.29 ? 6 DC A C4 1
ATOM 121 N N4 . DC A 1 6 ? 13.627 33.724 2.481 1.00 12.13 ? 6 DC A N4 1
ATOM 122 C C5 . DC A 1 6 ? 11.854 35.142 1.683 1.00 11.42 ? 6 DC A C5 1
ATOM 123 C C6 . DC A 1 6 ? 11.046 36.230 1.971 1.00 12.83 ? 6 DC A C6 1
ATOM 124 P P . DA A 1 7 ? 11.753 41.555 0.619 1.00 18.44 ? 7 DA A P 1
ATOM 125 O OP1 . DA A 1 7 ? 11.390 42.949 0.124 1.00 20.05 ? 7 DA A OP1 1
ATOM 126 O OP2 . DA A 1 7 ? 12.254 40.548 -0.357 1.00 19.82 ? 7 DA A OP2 1
ATOM 127 O "O5'" . DA A 1 7 ? 12.849 41.673 1.726 1.00 16.14 ? 7 DA A "O5'" 1
ATOM 128 C "C5'" . DA A 1 7 ? 12.646 42.545 2.847 1.00 16.16 ? 7 DA A "C5'" 1
ATOM 129 C "C4'" . DA A 1 7 ? 13.817 42.472 3.791 1.00 15.48 ? 7 DA A "C4'" 1
ATOM 130 O "O4'" . DA A 1 7 ? 13.874 41.138 4.338 1.00 15.89 ? 7 DA A "O4'" 1
ATOM 131 C "C3'" . DA A 1 7 ? 15.160 42.656 3.119 1.00 16.01 ? 7 DA A "C3'" 1
ATOM 132 O "O3'" . DA A 1 7 ? 15.547 44.028 3.135 1.00 17.45 ? 7 DA A "O3'" 1
ATOM 133 C "C2'" . DA A 1 7 ? 16.113 41.806 3.927 1.00 15.80 ? 7 DA A "C2'" 1
ATOM 134 C "C1'" . DA A 1 7 ? 15.220 40.742 4.520 1.00 15.04 ? 7 DA A "C1'" 1
ATOM 135 N N9 . DA A 1 7 ? 15.394 39.500 3.775 1.00 13.32 ? 7 DA A N9 1
ATOM 136 C C8 . DA A 1 7 ? 14.683 39.065 2.701 1.00 12.05 ? 7 DA A C8 1
ATOM 137 N N7 . DA A 1 7 ? 15.027 37.872 2.300 1.00 12.96 ? 7 DA A N7 1
ATOM 138 C C5 . DA A 1 7 ? 16.029 37.491 3.194 1.00 12.41 ? 7 DA A C5 1
ATOM 139 C C6 . DA A 1 7 ? 16.787 36.315 3.349 1.00 11.98 ? 7 DA A C6 1
ATOM 140 N N6 . DA A 1 7 ? 16.611 35.215 2.583 1.00 12.94 ? 7 DA A N6 1
ATOM 141 N N1 . DA A 1 7 ? 17.717 36.290 4.321 1.00 12.99 ? 7 DA A N1 1
ATOM 142 C C2 . DA A 1 7 ? 17.865 37.369 5.103 1.00 12.16 ? 7 DA A C2 1
ATOM 143 N N3 . DA A 1 7 ? 17.187 38.514 5.070 1.00 12.67 ? 7 DA A N3 1
ATOM 144 C C4 . DA A 1 7 ? 16.282 38.505 4.087 1.00 11.96 ? 7 DA A C4 1
ATOM 145 P P . DC A 1 8 ? 16.500 44.568 1.973 1.00 18.48 ? 8 DC A P 1
ATOM 146 O OP1 . DC A 1 8 ? 16.528 46.047 2.144 1.00 20.60 ? 8 DC A OP1 1
ATOM 147 O OP2 . DC A 1 8 ? 16.094 44.003 0.649 1.00 22.29 ? 8 DC A OP2 1
ATOM 148 O "O5'" . DC A 1 8 ? 17.913 43.988 2.375 1.00 17.80 ? 8 DC A "O5'" 1
ATOM 149 C "C5'" . DC A 1 8 ? 18.570 44.429 3.581 1.00 18.56 ? 8 DC A "C5'" 1
ATOM 150 C "C4'" . DC A 1 8 ? 19.898 43.728 3.773 1.00 19.07 ? 8 DC A "C4'" 1
ATOM 151 O "O4'" . DC A 1 8 ? 19.675 42.294 3.841 1.00 19.29 ? 8 DC A "O4'" 1
ATOM 152 C "C3'" . DC A 1 8 ? 20.915 43.954 2.644 1.00 20.74 ? 8 DC A "C3'" 1
ATOM 153 O "O3'" . DC A 1 8 ? 22.231 44.079 3.217 1.00 21.77 ? 8 DC A "O3'" 1
ATOM 154 C "C2'" . DC A 1 8 ? 20.850 42.669 1.837 1.00 20.03 ? 8 DC A "C2'" 1
ATOM 155 C "C1'" . DC A 1 8 ? 20.527 41.636 2.915 1.00 19.29 ? 8 DC A "C1'" 1
ATOM 156 N N1 . DC A 1 8 ? 19.787 40.483 2.346 1.00 17.14 ? 8 DC A N1 1
ATOM 157 C C2 . DC A 1 8 ? 20.294 39.180 2.550 1.00 17.66 ? 8 DC A C2 1
ATOM 158 O O2 . DC A 1 8 ? 21.237 39.029 3.337 1.00 17.24 ? 8 DC A O2 1
ATOM 159 N N3 . DC A 1 8 ? 19.712 38.145 1.901 1.00 15.34 ? 8 DC A N3 1
ATOM 160 C C4 . DC A 1 8 ? 18.640 38.340 1.134 1.00 15.88 ? 8 DC A C4 1
ATOM 161 N N4 . DC A 1 8 ? 18.145 37.299 0.471 1.00 15.45 ? 8 DC A N4 1
ATOM 162 C C5 . DC A 1 8 ? 18.035 39.624 0.995 1.00 15.56 ? 8 DC A C5 1
ATOM 163 C C6 . DC A 1 8 ? 18.663 40.671 1.610 1.00 17.16 ? 8 DC A C6 1
HETATM 164 O O . HOH B 2 . ? 6.596 35.941 4.635 1.00 13.30 ? 9 HOH A O 1
HETATM 165 O O . HOH B 2 . ? 11.245 25.832 9.070 1.00 16.58 ? 10 HOH A O 1
HETATM 166 O O . HOH B 2 . ? 17.096 15.535 9.368 1.00 18.98 ? 11 HOH A O 1
HETATM 167 O O . HOH B 2 . ? 15.080 20.434 9.590 1.00 20.81 ? 12 HOH A O 1
HETATM 168 O O . HOH B 2 . ? 4.322 16.761 8.688 1.00 21.52 ? 13 HOH A O 1
HETATM 169 O O . HOH B 2 . ? 16.730 47.311 4.502 1.00 20.72 ? 14 HOH A O 1
HETATM 170 O O . HOH B 2 . ? 16.749 16.562 6.850 1.00 21.03 ? 15 HOH A O 1
HETATM 171 O O . HOH B 2 . ? 4.047 20.768 6.099 1.00 22.60 ? 16 HOH A O 1
HETATM 172 O O . HOH B 2 . ? 18.509 40.884 6.160 1.00 21.55 ? 17 HOH A O 1
HETATM 173 O O . HOH B 2 . ? 16.742 42.100 -1.024 1.00 22.64 ? 18 HOH A O 1
HETATM 174 O O . HOH B 2 . ? 14.447 19.579 14.047 1.00 22.65 ? 19 HOH A O 1
HETATM 175 O O . HOH B 2 . ? 12.082 30.002 1.180 1.00 23.81 ? 20 HOH A O 1
HETATM 176 O O . HOH B 2 . ? 13.024 27.759 5.186 1.00 24.37 ? 21 HOH A O 1
HETATM 177 O O . HOH B 2 . ? 11.326 23.088 12.713 1.00 26.90 ? 22 HOH A O 1
HETATM 178 O O . HOH B 2 . ? 12.185 24.539 6.121 1.00 26.57 ? 23 HOH A O 1
HETATM 179 O O . HOH B 2 . ? 14.569 36.436 -0.077 1.00 27.48 ? 24 HOH A O 1
HETATM 180 O O . HOH B 2 . ? 8.973 24.678 12.316 1.00 28.64 ? 25 HOH A O 1
HETATM 181 O O . HOH B 2 . ? 11.491 28.303 -0.690 1.00 29.44 ? 26 HOH A O 1
HETATM 182 O O . HOH B 2 . ? 14.874 40.260 -1.286 1.00 31.60 ? 27 HOH A O 1
HETATM 183 O O . HOH B 2 . ? 14.786 17.056 3.219 1.00 32.50 ? 28 HOH A O 1
HETATM 184 O O . HOH B 2 . ? 13.262 21.822 5.471 1.00 29.30 ? 29 HOH A O 1
HETATM 185 O O . HOH B 2 . ? 5.149 39.255 -1.353 1.00 30.81 ? 30 HOH A O 1
HETATM 186 O O . HOH B 2 . ? 12.391 36.161 -1.805 1.00 32.10 ? 31 HOH A O 1
HETATM 187 O O . HOH B 2 . ? 13.406 32.179 -0.085 1.00 32.58 ? 32 HOH A O 1
HETATM 188 O O . HOH B 2 . ? 13.955 29.691 2.942 1.00 34.50 ? 33 HOH A O 1
HETATM 189 O O . HOH B 2 . ? 15.014 23.226 9.804 1.00 34.70 ? 34 HOH A O 1
HETATM 190 O O . HOH B 2 . ? 12.503 24.290 -0.091 1.00 38.46 ? 35 HOH A O 1
HETATM 191 O O . HOH B 2 . ? 13.592 46.969 3.117 1.00 46.41 ? 36 HOH A O 1
HETATM 192 O O . HOH B 2 . ? 11.055 39.912 -4.053 1.00 43.12 ? 37 HOH A O 1
HETATM 193 O O . HOH B 2 . ? 23.611 41.860 4.698 1.00 33.87 ? 38 HOH A O 1
HETATM 194 O O . HOH B 2 . ? 5.243 18.592 -0.495 1.00 43.38 ? 39 HOH A O 1
HETATM 195 O O . HOH B 2 . ? 7.075 15.555 0.292 1.00 42.97 ? 40 HOH A O 1
HETATM 196 O O . HOH B 2 . ? 8.945 17.034 -0.724 1.00 41.14 ? 41 HOH A O 1
HETATM 197 O O . HOH B 2 . ? 7.066 20.607 -2.105 1.00 40.15 ? 42 HOH A O 1
HETATM 198 O O . HOH B 2 . ? 13.094 24.170 2.397 1.00 34.65 ? 43 HOH A O 1
HETATM 199 O O . HOH B 2 . ? 4.105 17.790 6.247 1.00 32.73 ? 44 HOH A O 1
HETATM 200 O O . HOH B 2 . ? 17.754 19.776 9.722 1.00 43.29 ? 45 HOH A O 1
HETATM 201 O O . HOH B 2 . ? 11.281 33.278 -1.592 1.00 46.13 ? 46 HOH A O 1
HETATM 202 O O . HOH B 2 . ? 3.137 22.733 3.884 1.00 25.69 ? 47 HOH A O 1
HETATM 203 O O . HOH B 2 . ? 8.178 27.049 12.564 1.00 43.13 ? 48 HOH A O 1
HETATM 204 O O . HOH B 2 . ? 13.675 49.986 2.217 1.00 41.52 ? 49 HOH A O 1
HETATM 205 O O . HOH B 2 . ? 9.312 20.947 -3.000 1.00 37.85 ? 50 HOH A O 1
HETATM 206 O O . HOH B 2 . ? 11.570 16.556 0.745 1.00 39.63 ? 51 HOH A O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG GUA A . n
A 1 2 2ST 2 2 2 2ST SET A . n
A 1 3 DG 3 3 3 DG GUA A . n
A 1 4 DT 4 4 4 DT THY A . n
A 1 5 DA 5 5 5 DA ADE A . n
A 1 6 DC 6 6 6 DC CYT A . n
A 1 7 DA 7 7 7 DA ADE A . n
A 1 8 DC 8 8 8 DC CYT A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 9 1 HOH HOH A .
B 2 HOH 2 10 2 HOH HOH A .
B 2 HOH 3 11 3 HOH HOH A .
B 2 HOH 4 12 4 HOH HOH A .
B 2 HOH 5 13 5 HOH HOH A .
B 2 HOH 6 14 6 HOH HOH A .
B 2 HOH 7 15 7 HOH HOH A .
B 2 HOH 8 16 8 HOH HOH A .
B 2 HOH 9 17 9 HOH HOH A .
B 2 HOH 10 18 10 HOH HOH A .
B 2 HOH 11 19 11 HOH HOH A .
B 2 HOH 12 20 12 HOH HOH A .
B 2 HOH 13 21 13 HOH HOH A .
B 2 HOH 14 22 14 HOH HOH A .
B 2 HOH 15 23 15 HOH HOH A .
B 2 HOH 16 24 16 HOH HOH A .
B 2 HOH 17 25 17 HOH HOH A .
B 2 HOH 18 26 18 HOH HOH A .
B 2 HOH 19 27 19 HOH HOH A .
B 2 HOH 20 28 20 HOH HOH A .
B 2 HOH 21 29 21 HOH HOH A .
B 2 HOH 22 30 22 HOH HOH A .
B 2 HOH 23 31 23 HOH HOH A .
B 2 HOH 24 32 24 HOH HOH A .
B 2 HOH 25 33 25 HOH HOH A .
B 2 HOH 26 34 26 HOH HOH A .
B 2 HOH 27 35 27 HOH HOH A .
B 2 HOH 28 36 28 HOH HOH A .
B 2 HOH 29 37 29 HOH HOH A .
B 2 HOH 30 38 30 HOH HOH A .
B 2 HOH 31 39 31 HOH HOH A .
B 2 HOH 32 40 32 HOH HOH A .
B 2 HOH 33 41 33 HOH HOH A .
B 2 HOH 34 42 34 HOH HOH A .
B 2 HOH 35 43 35 HOH HOH A .
B 2 HOH 36 44 36 HOH HOH A .
B 2 HOH 37 45 37 HOH HOH A .
B 2 HOH 38 46 38 HOH HOH A .
B 2 HOH 39 47 39 HOH HOH A .
B 2 HOH 40 48 40 HOH HOH A .
B 2 HOH 41 49 41 HOH HOH A .
B 2 HOH 42 50 42 HOH HOH A .
B 2 HOH 43 51 43 HOH HOH A .
#
_pdbx_struct_mod_residue.id 1
_pdbx_struct_mod_residue.label_asym_id A
_pdbx_struct_mod_residue.label_comp_id 2ST
_pdbx_struct_mod_residue.label_seq_id 2
_pdbx_struct_mod_residue.auth_asym_id A
_pdbx_struct_mod_residue.auth_comp_id 2ST
_pdbx_struct_mod_residue.auth_seq_id 2
_pdbx_struct_mod_residue.PDB_ins_code ?
_pdbx_struct_mod_residue.parent_comp_id DT
_pdbx_struct_mod_residue.details ?
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 42.2210000000 -1.0000000000
0.0000000000 0.0000000000 42.2210000000 0.0000000000 0.0000000000 -1.0000000000 12.0130000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2006-07-04
2 'Structure model' 1 1 2008-05-01
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2023-08-30
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' pdbx_initial_refinement_model
5 4 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
CNS refinement 1.1 ? 1
CBASS 'data collection' . ? 2
DENZO 'data reduction' . ? 3
SCALEPACK 'data scaling' . ? 4
CNS phasing . ? 5
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 101.97 108.00 -6.03 0.70 N
2 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 102.46 108.00 -5.54 0.70 N
3 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 101.66 108.00 -6.34 0.70 N
#
_pdbx_validate_planes.id 1
_pdbx_validate_planes.PDB_model_num 1
_pdbx_validate_planes.auth_comp_id DC
_pdbx_validate_planes.auth_asym_id A
_pdbx_validate_planes.auth_seq_id 8
_pdbx_validate_planes.PDB_ins_code ?
_pdbx_validate_planes.label_alt_id ?
_pdbx_validate_planes.rmsd 0.076
_pdbx_validate_planes.type 'SIDE CHAIN'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
2ST OP3 O N N 1
2ST P P N N 2
2ST OP1 O N N 3
2ST OP2 O N N 4
2ST "O5'" O N N 5
2ST N1 N N N 6
2ST C6 C N N 7
2ST C2 C N N 8
2ST O2 O N N 9
2ST N3 N N N 10
2ST C4 C N N 11
2ST O4 O N N 12
2ST C5 C N N 13
2ST C5A C N N 14
2ST "C2'" C N R 15
2ST "C5'" C N N 16
2ST "C4'" C N R 17
2ST "O4'" O N N 18
2ST "C1'" C N R 19
2ST "C3'" C N R 20
2ST SE SE N N 21
2ST "CA'" C N N 22
2ST "O3'" O N N 23
2ST HOP3 H N N 24
2ST HOP2 H N N 25
2ST H6 H N N 26
2ST HN3 H N N 27
2ST H5A1 H N N 28
2ST H5A2 H N N 29
2ST H5A3 H N N 30
2ST "H2'" H N N 31
2ST "H5'" H N N 32
2ST "H5''" H N N 33
2ST "H4'" H N N 34
2ST "H1'" H N N 35
2ST "H3'" H N N 36
2ST "HA'1" H N N 37
2ST "HA'2" H N N 38
2ST "HA'3" H N N 39
2ST "HO3'" H N N 40
DA OP3 O N N 41
DA P P N N 42
DA OP1 O N N 43
DA OP2 O N N 44
DA "O5'" O N N 45
DA "C5'" C N N 46
DA "C4'" C N R 47
DA "O4'" O N N 48
DA "C3'" C N S 49
DA "O3'" O N N 50
DA "C2'" C N N 51
DA "C1'" C N R 52
DA N9 N Y N 53
DA C8 C Y N 54
DA N7 N Y N 55
DA C5 C Y N 56
DA C6 C Y N 57
DA N6 N N N 58
DA N1 N Y N 59
DA C2 C Y N 60
DA N3 N Y N 61
DA C4 C Y N 62
DA HOP3 H N N 63
DA HOP2 H N N 64
DA "H5'" H N N 65
DA "H5''" H N N 66
DA "H4'" H N N 67
DA "H3'" H N N 68
DA "HO3'" H N N 69
DA "H2'" H N N 70
DA "H2''" H N N 71
DA "H1'" H N N 72
DA H8 H N N 73
DA H61 H N N 74
DA H62 H N N 75
DA H2 H N N 76
DC OP3 O N N 77
DC P P N N 78
DC OP1 O N N 79
DC OP2 O N N 80
DC "O5'" O N N 81
DC "C5'" C N N 82
DC "C4'" C N R 83
DC "O4'" O N N 84
DC "C3'" C N S 85
DC "O3'" O N N 86
DC "C2'" C N N 87
DC "C1'" C N R 88
DC N1 N N N 89
DC C2 C N N 90
DC O2 O N N 91
DC N3 N N N 92
DC C4 C N N 93
DC N4 N N N 94
DC C5 C N N 95
DC C6 C N N 96
DC HOP3 H N N 97
DC HOP2 H N N 98
DC "H5'" H N N 99
DC "H5''" H N N 100
DC "H4'" H N N 101
DC "H3'" H N N 102
DC "HO3'" H N N 103
DC "H2'" H N N 104
DC "H2''" H N N 105
DC "H1'" H N N 106
DC H41 H N N 107
DC H42 H N N 108
DC H5 H N N 109
DC H6 H N N 110
DG OP3 O N N 111
DG P P N N 112
DG OP1 O N N 113
DG OP2 O N N 114
DG "O5'" O N N 115
DG "C5'" C N N 116
DG "C4'" C N R 117
DG "O4'" O N N 118
DG "C3'" C N S 119
DG "O3'" O N N 120
DG "C2'" C N N 121
DG "C1'" C N R 122
DG N9 N Y N 123
DG C8 C Y N 124
DG N7 N Y N 125
DG C5 C Y N 126
DG C6 C N N 127
DG O6 O N N 128
DG N1 N N N 129
DG C2 C N N 130
DG N2 N N N 131
DG N3 N N N 132
DG C4 C Y N 133
DG HOP3 H N N 134
DG HOP2 H N N 135
DG "H5'" H N N 136
DG "H5''" H N N 137
DG "H4'" H N N 138
DG "H3'" H N N 139
DG "HO3'" H N N 140
DG "H2'" H N N 141
DG "H2''" H N N 142
DG "H1'" H N N 143
DG H8 H N N 144
DG H1 H N N 145
DG H21 H N N 146
DG H22 H N N 147
DT OP3 O N N 148
DT P P N N 149
DT OP1 O N N 150
DT OP2 O N N 151
DT "O5'" O N N 152
DT "C5'" C N N 153
DT "C4'" C N R 154
DT "O4'" O N N 155
DT "C3'" C N S 156
DT "O3'" O N N 157
DT "C2'" C N N 158
DT "C1'" C N R 159
DT N1 N N N 160
DT C2 C N N 161
DT O2 O N N 162
DT N3 N N N 163
DT C4 C N N 164
DT O4 O N N 165
DT C5 C N N 166
DT C7 C N N 167
DT C6 C N N 168
DT HOP3 H N N 169
DT HOP2 H N N 170
DT "H5'" H N N 171
DT "H5''" H N N 172
DT "H4'" H N N 173
DT "H3'" H N N 174
DT "HO3'" H N N 175
DT "H2'" H N N 176
DT "H2''" H N N 177
DT "H1'" H N N 178
DT H3 H N N 179
DT H71 H N N 180
DT H72 H N N 181
DT H73 H N N 182
DT H6 H N N 183
HOH O O N N 184
HOH H1 H N N 185
HOH H2 H N N 186
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2ST OP3 P sing N N 1
2ST OP3 HOP3 sing N N 2
2ST P OP1 doub N N 3
2ST P OP2 sing N N 4
2ST P "O5'" sing N N 5
2ST OP2 HOP2 sing N N 6
2ST "O5'" "C5'" sing N N 7
2ST N1 C6 sing N N 8
2ST N1 C2 sing N N 9
2ST N1 "C1'" sing N N 10
2ST C6 C5 doub N N 11
2ST C6 H6 sing N N 12
2ST C2 O2 doub N N 13
2ST C2 N3 sing N N 14
2ST N3 C4 sing N N 15
2ST N3 HN3 sing N N 16
2ST C4 O4 doub N N 17
2ST C4 C5 sing N N 18
2ST C5 C5A sing N N 19
2ST C5A H5A1 sing N N 20
2ST C5A H5A2 sing N N 21
2ST C5A H5A3 sing N N 22
2ST "C2'" "C1'" sing N N 23
2ST "C2'" "C3'" sing N N 24
2ST "C2'" SE sing N N 25
2ST "C2'" "H2'" sing N N 26
2ST "C5'" "C4'" sing N N 27
2ST "C5'" "H5'" sing N N 28
2ST "C5'" "H5''" sing N N 29
2ST "C4'" "O4'" sing N N 30
2ST "C4'" "C3'" sing N N 31
2ST "C4'" "H4'" sing N N 32
2ST "O4'" "C1'" sing N N 33
2ST "C1'" "H1'" sing N N 34
2ST "C3'" "O3'" sing N N 35
2ST "C3'" "H3'" sing N N 36
2ST SE "CA'" sing N N 37
2ST "CA'" "HA'1" sing N N 38
2ST "CA'" "HA'2" sing N N 39
2ST "CA'" "HA'3" sing N N 40
2ST "O3'" "HO3'" sing N N 41
DA OP3 P sing N N 42
DA OP3 HOP3 sing N N 43
DA P OP1 doub N N 44
DA P OP2 sing N N 45
DA P "O5'" sing N N 46
DA OP2 HOP2 sing N N 47
DA "O5'" "C5'" sing N N 48
DA "C5'" "C4'" sing N N 49
DA "C5'" "H5'" sing N N 50
DA "C5'" "H5''" sing N N 51
DA "C4'" "O4'" sing N N 52
DA "C4'" "C3'" sing N N 53
DA "C4'" "H4'" sing N N 54
DA "O4'" "C1'" sing N N 55
DA "C3'" "O3'" sing N N 56
DA "C3'" "C2'" sing N N 57
DA "C3'" "H3'" sing N N 58
DA "O3'" "HO3'" sing N N 59
DA "C2'" "C1'" sing N N 60
DA "C2'" "H2'" sing N N 61
DA "C2'" "H2''" sing N N 62
DA "C1'" N9 sing N N 63
DA "C1'" "H1'" sing N N 64
DA N9 C8 sing Y N 65
DA N9 C4 sing Y N 66
DA C8 N7 doub Y N 67
DA C8 H8 sing N N 68
DA N7 C5 sing Y N 69
DA C5 C6 sing Y N 70
DA C5 C4 doub Y N 71
DA C6 N6 sing N N 72
DA C6 N1 doub Y N 73
DA N6 H61 sing N N 74
DA N6 H62 sing N N 75
DA N1 C2 sing Y N 76
DA C2 N3 doub Y N 77
DA C2 H2 sing N N 78
DA N3 C4 sing Y N 79
DC OP3 P sing N N 80
DC OP3 HOP3 sing N N 81
DC P OP1 doub N N 82
DC P OP2 sing N N 83
DC P "O5'" sing N N 84
DC OP2 HOP2 sing N N 85
DC "O5'" "C5'" sing N N 86
DC "C5'" "C4'" sing N N 87
DC "C5'" "H5'" sing N N 88
DC "C5'" "H5''" sing N N 89
DC "C4'" "O4'" sing N N 90
DC "C4'" "C3'" sing N N 91
DC "C4'" "H4'" sing N N 92
DC "O4'" "C1'" sing N N 93
DC "C3'" "O3'" sing N N 94
DC "C3'" "C2'" sing N N 95
DC "C3'" "H3'" sing N N 96
DC "O3'" "HO3'" sing N N 97
DC "C2'" "C1'" sing N N 98
DC "C2'" "H2'" sing N N 99
DC "C2'" "H2''" sing N N 100
DC "C1'" N1 sing N N 101
DC "C1'" "H1'" sing N N 102
DC N1 C2 sing N N 103
DC N1 C6 sing N N 104
DC C2 O2 doub N N 105
DC C2 N3 sing N N 106
DC N3 C4 doub N N 107
DC C4 N4 sing N N 108
DC C4 C5 sing N N 109
DC N4 H41 sing N N 110
DC N4 H42 sing N N 111
DC C5 C6 doub N N 112
DC C5 H5 sing N N 113
DC C6 H6 sing N N 114
DG OP3 P sing N N 115
DG OP3 HOP3 sing N N 116
DG P OP1 doub N N 117
DG P OP2 sing N N 118
DG P "O5'" sing N N 119
DG OP2 HOP2 sing N N 120
DG "O5'" "C5'" sing N N 121
DG "C5'" "C4'" sing N N 122
DG "C5'" "H5'" sing N N 123
DG "C5'" "H5''" sing N N 124
DG "C4'" "O4'" sing N N 125
DG "C4'" "C3'" sing N N 126
DG "C4'" "H4'" sing N N 127
DG "O4'" "C1'" sing N N 128
DG "C3'" "O3'" sing N N 129
DG "C3'" "C2'" sing N N 130
DG "C3'" "H3'" sing N N 131
DG "O3'" "HO3'" sing N N 132
DG "C2'" "C1'" sing N N 133
DG "C2'" "H2'" sing N N 134
DG "C2'" "H2''" sing N N 135
DG "C1'" N9 sing N N 136
DG "C1'" "H1'" sing N N 137
DG N9 C8 sing Y N 138
DG N9 C4 sing Y N 139
DG C8 N7 doub Y N 140
DG C8 H8 sing N N 141
DG N7 C5 sing Y N 142
DG C5 C6 sing N N 143
DG C5 C4 doub Y N 144
DG C6 O6 doub N N 145
DG C6 N1 sing N N 146
DG N1 C2 sing N N 147
DG N1 H1 sing N N 148
DG C2 N2 sing N N 149
DG C2 N3 doub N N 150
DG N2 H21 sing N N 151
DG N2 H22 sing N N 152
DG N3 C4 sing N N 153
DT OP3 P sing N N 154
DT OP3 HOP3 sing N N 155
DT P OP1 doub N N 156
DT P OP2 sing N N 157
DT P "O5'" sing N N 158
DT OP2 HOP2 sing N N 159
DT "O5'" "C5'" sing N N 160
DT "C5'" "C4'" sing N N 161
DT "C5'" "H5'" sing N N 162
DT "C5'" "H5''" sing N N 163
DT "C4'" "O4'" sing N N 164
DT "C4'" "C3'" sing N N 165
DT "C4'" "H4'" sing N N 166
DT "O4'" "C1'" sing N N 167
DT "C3'" "O3'" sing N N 168
DT "C3'" "C2'" sing N N 169
DT "C3'" "H3'" sing N N 170
DT "O3'" "HO3'" sing N N 171
DT "C2'" "C1'" sing N N 172
DT "C2'" "H2'" sing N N 173
DT "C2'" "H2''" sing N N 174
DT "C1'" N1 sing N N 175
DT "C1'" "H1'" sing N N 176
DT N1 C2 sing N N 177
DT N1 C6 sing N N 178
DT C2 O2 doub N N 179
DT C2 N3 sing N N 180
DT N3 C4 sing N N 181
DT N3 H3 sing N N 182
DT C4 O4 doub N N 183
DT C4 C5 sing N N 184
DT C5 C7 sing N N 185
DT C5 C6 doub N N 186
DT C7 H71 sing N N 187
DT C7 H72 sing N N 188
DT C7 H73 sing N N 189
DT C6 H6 sing N N 190
HOH O H1 sing N N 191
HOH O H2 sing N N 192
#
_ndb_struct_conf_na.entry_id 2HC7
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 8_665 -0.244 -0.062 -0.187 -17.656 -9.728 -1.263 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A 2ST 2 1_555 A DA 7 8_665 -0.060 -0.103 0.099 -8.319 -11.841 1.492 2 A_2ST2:DA7_A A 2 ? A 7 ? 20 1
1 A DG 3 1_555 A DC 6 8_665 -0.191 -0.130 0.209 -5.605 -14.191 1.655 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1
1 A DT 4 1_555 A DA 5 8_665 -0.109 -0.107 0.272 -3.940 -11.596 -5.069 4 A_DT4:DA5_A A 4 ? A 5 ? 20 1
1 A DA 5 1_555 A DT 4 8_665 0.109 -0.107 0.272 3.940 -11.596 -5.069 5 A_DA5:DT4_A A 5 ? A 4 ? 20 1
1 A DC 6 1_555 A DG 3 8_665 0.191 -0.130 0.209 5.605 -14.191 1.655 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1
1 A DA 7 1_555 A 2ST 2 8_665 0.060 -0.103 0.099 8.319 -11.841 1.492 7 A_DA7:2ST2_A A 7 ? A 2 ? 20 1
1 A DC 8 1_555 A DG 1 8_665 0.244 -0.062 -0.187 17.656 -9.728 -1.263 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 8_665 A 2ST 2 1_555 A DA 7 8_665 0.304 -1.005 3.181 -0.247 11.919 30.236 -3.720 -0.583 2.606 21.813
0.452 32.451 1 AA_DG12ST2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A 2ST 2 1_555 A DA 7 8_665 A DG 3 1_555 A DC 6 8_665 0.722 -1.433 3.071 0.774 12.826 29.396 -4.576 -1.189 2.280 23.888
-1.442 32.025 2 AA_2ST2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DG 3 1_555 A DC 6 8_665 A DT 4 1_555 A DA 5 8_665 -0.423 -1.511 3.211 0.425 1.895 35.463 -2.746 0.754 3.123 3.108
-0.696 35.514 3 AA_DG3DT4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A DT 4 1_555 A DA 5 8_665 A DA 5 1_555 A DT 4 8_665 0.000 -1.457 2.966 0.000 6.419 30.140 -3.823 0.000 2.608 12.171
0.000 30.801 4 AA_DT4DA5:DT4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DA 5 1_555 A DT 4 8_665 A DC 6 1_555 A DG 3 8_665 0.423 -1.511 3.211 -0.425 1.895 35.463 -2.746 -0.754 3.123 3.108
0.696 35.514 5 AA_DA5DC6:DG3DT4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A DC 6 1_555 A DG 3 8_665 A DA 7 1_555 A 2ST 2 8_665 -0.722 -1.433 3.071 -0.774 12.826 29.396 -4.576 1.189 2.280 23.888
1.442 32.025 6 AA_DC6DA7:2ST2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A DA 7 1_555 A 2ST 2 8_665 A DC 8 1_555 A DG 1 8_665 -0.304 -1.005 3.181 0.247 11.919 30.236 -3.720 0.583 2.606 21.813
-0.452 32.451 7 AA_DA7DC8:DG12ST2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1Z7I
_pdbx_initial_refinement_model.details 'pdb entry 1Z7I'
#