data_2H05
#
_entry.id 2H05
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.377
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2H05 pdb_00002h05 10.2210/pdb2h05/pdb
NDB AD0064 ? ?
RCSB RCSB037763 ? ?
WWPDB D_1000037763 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1Z7I . unspecified
PDB 2DLJ . unspecified
PDB 2GPX . unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 2H05
_pdbx_database_status.recvd_initial_deposition_date 2006-05-14
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Jiang, J.' 1
'Sheng, J.' 2
'Huang, Z.' 3
#
_citation.id primary
_citation.title 'Selenium derivatization of nucleic acids for crystallography.'
_citation.journal_abbrev 'Nucleic Acids Res.'
_citation.journal_volume 35
_citation.page_first 477
_citation.page_last 485
_citation.year 2007
_citation.journal_id_ASTM NARHAD
_citation.country UK
_citation.journal_id_ISSN 0305-1048
_citation.journal_id_CSD 0389
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 17169989
_citation.pdbx_database_id_DOI 10.1093/nar/gkl1070
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Jiang, J.' 1 ?
primary 'Sheng, J.' 2 ?
primary 'Carrasco, N.' 3 ?
primary 'Huang, Z.' 4 ?
#
_cell.entry_id 2H05
_cell.length_a 42.048
_cell.length_b 42.048
_cell.length_c 24.270
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 2H05
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*GP*TP*GP*(BRU)P*AP*CP*AP*C)-3'" 2491.487 1 ? '5-BROMO-Modified T4, BRU' ? ?
2 water nat water 18.015 33 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(DT)(DG)(BRU)(DA)(DC)(DA)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GTGUACAC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DT n
1 3 DG n
1 4 BRU n
1 5 DA n
1 6 DC n
1 7 DA n
1 8 DC n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'Solid Phase Synthesis via Phosphoramidite Chemistry'
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 2H05
_struct_ref.pdbx_db_accession 2H05
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 2H05
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 2H05
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
_exptl.entry_id 2H05
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.07
_exptl_crystal.density_percent_sol 40.66
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 283
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.0
_exptl_crystal_grow.pdbx_details '8mM MgCl2, 4mM Spermine, 40% MPD, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 283K'
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 MgCl2 ? ? ?
1 2 1 Spermine ? ? ?
1 3 1 MPD ? ? ?
1 4 1 H2O ? ? ?
1 5 2 MgCl2 ? ? ?
1 6 2 Spermine ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 210'
_diffrn_detector.pdbx_collection_date 2006-05-06
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator Si
_diffrn_radiation.pdbx_diffrn_protocol MAD
_diffrn_radiation.pdbx_scattering_type x-ray
#
loop_
_diffrn_radiation_wavelength.id
_diffrn_radiation_wavelength.wavelength
_diffrn_radiation_wavelength.wt
1 0.9199 1.0
2 0.9202 1.0
3 0.9400 1.0
4 1.100 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'NSLS BEAMLINE X12C'
_diffrn_source.pdbx_synchrotron_site NSLS
_diffrn_source.pdbx_synchrotron_beamline X12C
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list '0.9199, 0.9202, 0.9400, 1.100'
#
_reflns.entry_id 2H05
_reflns.observed_criterion_sigma_I -3
_reflns.observed_criterion_sigma_F 0
_reflns.d_resolution_low 18.81
_reflns.d_resolution_high 1.8
_reflns.number_obs 2248
_reflns.number_all 2248
_reflns.percent_possible_obs 99.4
_reflns.pdbx_Rmerge_I_obs 0.045
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 12.1
_reflns.B_iso_Wilson_estimate 29.8
_reflns.pdbx_redundancy 12.1
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.80
_reflns_shell.d_res_low 1.86
_reflns_shell.percent_possible_all 95.8
_reflns_shell.Rmerge_I_obs 0.313
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 2.7
_reflns_shell.pdbx_redundancy 7.1
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 203
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 2H05
_refine.ls_number_reflns_obs 2036
_refine.ls_number_reflns_all 2036
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.0
_refine.pdbx_data_cutoff_high_absF 532897.43
_refine.pdbx_data_cutoff_low_absF 0.000000
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 18.81
_refine.ls_d_res_high 1.80
_refine.ls_percent_reflns_obs 91.1
_refine.ls_R_factor_obs 0.213
_refine.ls_R_factor_all 0.22
_refine.ls_R_factor_R_work 0.213
_refine.ls_R_factor_R_free 0.248
_refine.ls_R_factor_R_free_error 0.018
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 9.2
_refine.ls_number_reflns_R_free 188
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean 32.5
_refine.aniso_B[1][1] 2.20
_refine.aniso_B[2][2] 2.20
_refine.aniso_B[3][3] -4.41
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'FLAT MODEL'
_refine.solvent_model_param_ksol 0.32
_refine.solvent_model_param_bsol 41.4104
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model 'pdb entry 1Z7I'
_refine.pdbx_method_to_determine_struct 'MAD, SAD'
_refine.pdbx_isotropic_thermal_model RESTRAINED
_refine.pdbx_stereochemistry_target_values DNA-RNA
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 2H05
_refine_analyze.Luzzati_coordinate_error_obs 0.23
_refine_analyze.Luzzati_sigma_a_obs 0.20
_refine_analyze.Luzzati_d_res_low_obs 5.00
_refine_analyze.Luzzati_coordinate_error_free 0.28
_refine_analyze.Luzzati_sigma_a_free 0.20
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 161
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 33
_refine_hist.number_atoms_total 194
_refine_hist.d_res_high 1.80
_refine_hist.d_res_low 18.81
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ?
c_angle_deg 1.9 ? ? ? 'X-RAY DIFFRACTION' ?
c_dihedral_angle_d 28.3 ? ? ? 'X-RAY DIFFRACTION' ?
c_improper_angle_d 2.16 ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 6
_refine_ls_shell.d_res_high 1.80
_refine_ls_shell.d_res_low 1.91
_refine_ls_shell.number_reflns_R_work 247
_refine_ls_shell.R_factor_R_work 0.273
_refine_ls_shell.percent_reflns_obs 75.8
_refine_ls_shell.R_factor_R_free 0.413
_refine_ls_shell.R_factor_R_free_error 0.078
_refine_ls_shell.percent_reflns_R_free 10.2
_refine_ls_shell.number_reflns_R_free 28
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs 247
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
loop_
_pdbx_xplor_file.serial_no
_pdbx_xplor_file.param_file
_pdbx_xplor_file.topol_file
_pdbx_xplor_file.pdbx_refine_id
1 protein_rep.param protein.top 'X-RAY DIFFRACTION'
2 water_rep.param dna-rna.top 'X-RAY DIFFRACTION'
3 ion.param water.top 'X-RAY DIFFRACTION'
4 dna-rna_ums.par ion.top 'X-RAY DIFFRACTION'
#
_struct.entry_id 2H05
_struct.title 'Br Derivitation of A-DNA Octamer GTG(Ubr)ACAC'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2H05
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Br-DNA, Se-DNA, Se-Br-DNA, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 3 "O3'" ? ? ? 1_555 A BRU 4 P ? ? A DG 3 A BRU 4 1_555 ? ? ? ? ? ? ? 1.615 ? ?
covale2 covale both ? A BRU 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A BRU 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.601 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A DT 2 A DA 7 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A DT 2 A DA 7 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A BRU 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A BRU 4 A DA 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A BRU 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A BRU 4 A DA 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A BRU 4 N3 ? ? A DA 5 A BRU 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A BRU 4 O4 ? ? A DA 5 A BRU 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 2 N3 ? ? A DA 7 A DT 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 2 O4 ? ? A DA 7 A DT 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_database_PDB_matrix.entry_id 2H05
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 2H05
_atom_sites.fract_transf_matrix[1][1] 0.023782
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023782
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.041203
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
BR
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? -1.584 7.084 17.688 1.00 28.90 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? -3.010 6.954 17.578 1.00 28.37 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? -3.677 8.006 16.723 1.00 27.33 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? -3.584 9.235 17.478 1.00 26.10 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? -2.960 8.304 15.410 1.00 28.41 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? -3.480 7.674 14.256 1.00 29.76 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? -3.089 9.807 15.241 1.00 27.50 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? -3.407 10.353 16.617 1.00 26.17 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? -2.107 10.848 17.102 1.00 25.80 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? -1.160 10.206 17.869 1.00 24.90 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? -0.070 10.923 18.057 1.00 25.91 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? -0.318 12.103 17.367 1.00 25.81 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 0.520 13.281 17.164 1.00 26.00 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 1.669 13.512 17.597 1.00 26.40 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? -0.128 14.226 16.375 1.00 25.76 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? -1.401 14.095 15.852 1.00 27.54 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? -1.859 15.147 15.135 1.00 26.10 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? -2.173 13.027 16.025 1.00 25.95 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? -1.576 12.082 16.789 1.00 26.03 ? 1 DG A C4 1
ATOM 20 P P . DT A 1 2 ? -2.461 7.276 13.065 1.00 31.11 ? 2 DT A P 1
ATOM 21 O OP1 . DT A 1 2 ? -3.202 6.380 12.140 1.00 33.94 ? 2 DT A OP1 1
ATOM 22 O OP2 . DT A 1 2 ? -1.158 6.832 13.617 1.00 31.25 ? 2 DT A OP2 1
ATOM 23 O "O5'" . DT A 1 2 ? -2.196 8.660 12.329 1.00 31.33 ? 2 DT A "O5'" 1
ATOM 24 C "C5'" . DT A 1 2 ? -3.276 9.421 11.809 1.00 32.33 ? 2 DT A "C5'" 1
ATOM 25 C "C4'" . DT A 1 2 ? -2.761 10.682 11.165 1.00 33.36 ? 2 DT A "C4'" 1
ATOM 26 O "O4'" . DT A 1 2 ? -2.255 11.537 12.225 1.00 32.65 ? 2 DT A "O4'" 1
ATOM 27 C "C3'" . DT A 1 2 ? -1.566 10.446 10.242 1.00 34.16 ? 2 DT A "C3'" 1
ATOM 28 O "O3'" . DT A 1 2 ? -1.883 10.386 8.865 1.00 37.08 ? 2 DT A "O3'" 1
ATOM 29 C "C2'" . DT A 1 2 ? -0.672 11.652 10.465 1.00 33.34 ? 2 DT A "C2'" 1
ATOM 30 C "C1'" . DT A 1 2 ? -1.173 12.324 11.729 1.00 31.72 ? 2 DT A "C1'" 1
ATOM 31 N N1 . DT A 1 2 ? -0.147 12.086 12.806 1.00 29.54 ? 2 DT A N1 1
ATOM 32 C C2 . DT A 1 2 ? 0.740 13.135 13.032 1.00 28.53 ? 2 DT A C2 1
ATOM 33 O O2 . DT A 1 2 ? 0.647 14.218 12.456 1.00 26.98 ? 2 DT A O2 1
ATOM 34 N N3 . DT A 1 2 ? 1.741 12.880 13.942 1.00 24.44 ? 2 DT A N3 1
ATOM 35 C C4 . DT A 1 2 ? 1.970 11.727 14.660 1.00 26.76 ? 2 DT A C4 1
ATOM 36 O O4 . DT A 1 2 ? 2.938 11.649 15.422 1.00 29.04 ? 2 DT A O4 1
ATOM 37 C C5 . DT A 1 2 ? 0.982 10.635 14.424 1.00 25.89 ? 2 DT A C5 1
ATOM 38 C C7 . DT A 1 2 ? 1.133 9.351 15.184 1.00 27.49 ? 2 DT A C7 1
ATOM 39 C C6 . DT A 1 2 ? -0.035 10.886 13.505 1.00 27.35 ? 2 DT A C6 1
ATOM 40 P P . DG A 1 3 ? -0.796 9.762 7.844 1.00 40.47 ? 3 DG A P 1
ATOM 41 O OP1 . DG A 1 3 ? -1.562 9.151 6.732 1.00 40.94 ? 3 DG A OP1 1
ATOM 42 O OP2 . DG A 1 3 ? 0.228 8.963 8.592 1.00 37.43 ? 3 DG A OP2 1
ATOM 43 O "O5'" . DG A 1 3 ? -0.041 11.053 7.317 1.00 39.82 ? 3 DG A "O5'" 1
ATOM 44 C "C5'" . DG A 1 3 ? 1.238 11.366 7.812 1.00 37.45 ? 3 DG A "C5'" 1
ATOM 45 C "C4'" . DG A 1 3 ? 1.557 12.808 7.529 1.00 36.54 ? 3 DG A "C4'" 1
ATOM 46 O "O4'" . DG A 1 3 ? 1.514 13.468 8.820 1.00 34.59 ? 3 DG A "O4'" 1
ATOM 47 C "C3'" . DG A 1 3 ? 2.983 12.951 7.009 1.00 36.22 ? 3 DG A "C3'" 1
ATOM 48 O "O3'" . DG A 1 3 ? 3.078 13.349 5.649 1.00 37.02 ? 3 DG A "O3'" 1
ATOM 49 C "C2'" . DG A 1 3 ? 3.658 13.954 7.923 1.00 35.13 ? 3 DG A "C2'" 1
ATOM 50 C "C1'" . DG A 1 3 ? 2.720 14.161 9.097 1.00 33.65 ? 3 DG A "C1'" 1
ATOM 51 N N9 . DG A 1 3 ? 3.272 13.311 10.163 1.00 29.60 ? 3 DG A N9 1
ATOM 52 C C8 . DG A 1 3 ? 2.890 12.059 10.594 1.00 29.35 ? 3 DG A C8 1
ATOM 53 N N7 . DG A 1 3 ? 3.655 11.586 11.551 1.00 29.20 ? 3 DG A N7 1
ATOM 54 C C5 . DG A 1 3 ? 4.589 12.587 11.767 1.00 26.36 ? 3 DG A C5 1
ATOM 55 C C6 . DG A 1 3 ? 5.700 12.675 12.707 1.00 25.13 ? 3 DG A C6 1
ATOM 56 O O6 . DG A 1 3 ? 6.080 11.849 13.576 1.00 24.58 ? 3 DG A O6 1
ATOM 57 N N1 . DG A 1 3 ? 6.372 13.881 12.558 1.00 23.62 ? 3 DG A N1 1
ATOM 58 C C2 . DG A 1 3 ? 6.052 14.868 11.660 1.00 23.56 ? 3 DG A C2 1
ATOM 59 N N2 . DG A 1 3 ? 6.832 15.944 11.653 1.00 24.76 ? 3 DG A N2 1
ATOM 60 N N3 . DG A 1 3 ? 5.039 14.808 10.819 1.00 24.63 ? 3 DG A N3 1
ATOM 61 C C4 . DG A 1 3 ? 4.362 13.656 10.922 1.00 27.31 ? 3 DG A C4 1
HETATM 62 N N1 . BRU A 1 4 ? 8.003 14.044 8.591 1.00 28.23 ? 4 BRU A N1 1
HETATM 63 C C2 . BRU A 1 4 ? 8.885 13.921 9.642 1.00 28.20 ? 4 BRU A C2 1
HETATM 64 N N3 . BRU A 1 4 ? 8.728 12.792 10.421 1.00 25.37 ? 4 BRU A N3 1
HETATM 65 C C4 . BRU A 1 4 ? 7.812 11.749 10.247 1.00 25.81 ? 4 BRU A C4 1
HETATM 66 C C5 . BRU A 1 4 ? 6.874 11.900 9.082 1.00 27.58 ? 4 BRU A C5 1
HETATM 67 C C6 . BRU A 1 4 ? 7.025 13.076 8.330 1.00 28.81 ? 4 BRU A C6 1
HETATM 68 O O2 . BRU A 1 4 ? 9.775 14.751 9.855 1.00 27.54 ? 4 BRU A O2 1
HETATM 69 O O4 . BRU A 1 4 ? 7.820 10.815 11.011 1.00 24.09 ? 4 BRU A O4 1
HETATM 70 BR BR . BRU A 1 4 ? 5.737 10.670 8.761 0.95 31.12 ? 4 BRU A BR 1
HETATM 71 C "C1'" . BRU A 1 4 ? 8.233 15.263 7.738 1.00 32.24 ? 4 BRU A "C1'" 1
HETATM 72 C "C2'" . BRU A 1 4 ? 8.978 14.821 6.493 1.00 32.64 ? 4 BRU A "C2'" 1
HETATM 73 C "C3'" . BRU A 1 4 ? 7.996 14.942 5.342 1.00 33.83 ? 4 BRU A "C3'" 1
HETATM 74 C "C4'" . BRU A 1 4 ? 6.803 15.701 5.915 1.00 33.78 ? 4 BRU A "C4'" 1
HETATM 75 O "O3'" . BRU A 1 4 ? 8.634 15.572 4.246 1.00 34.07 ? 4 BRU A "O3'" 1
HETATM 76 O "O4'" . BRU A 1 4 ? 6.896 15.557 7.355 1.00 33.10 ? 4 BRU A "O4'" 1
HETATM 77 C "C5'" . BRU A 1 4 ? 5.476 15.123 5.490 1.00 34.81 ? 4 BRU A "C5'" 1
HETATM 78 O "O5'" . BRU A 1 4 ? 5.541 13.710 5.451 1.00 35.74 ? 4 BRU A "O5'" 1
HETATM 79 P P . BRU A 1 4 ? 4.365 12.877 4.796 1.00 37.38 ? 4 BRU A P 1
HETATM 80 O OP1 . BRU A 1 4 ? 4.179 13.378 3.407 1.00 38.82 ? 4 BRU A OP1 1
HETATM 81 O OP2 . BRU A 1 4 ? 4.616 11.447 5.023 1.00 36.00 ? 4 BRU A OP2 1
ATOM 82 P P . DA A 1 5 ? 9.724 14.741 3.418 1.00 33.92 ? 5 DA A P 1
ATOM 83 O OP1 . DA A 1 5 ? 9.865 15.381 2.083 1.00 34.09 ? 5 DA A OP1 1
ATOM 84 O OP2 . DA A 1 5 ? 9.441 13.298 3.489 1.00 34.09 ? 5 DA A OP2 1
ATOM 85 O "O5'" . DA A 1 5 ? 11.042 15.039 4.268 1.00 31.37 ? 5 DA A "O5'" 1
ATOM 86 C "C5'" . DA A 1 5 ? 11.977 14.024 4.584 1.00 29.90 ? 5 DA A "C5'" 1
ATOM 87 C "C4'" . DA A 1 5 ? 12.994 14.557 5.565 1.00 28.27 ? 5 DA A "C4'" 1
ATOM 88 O "O4'" . DA A 1 5 ? 12.319 14.685 6.845 1.00 27.34 ? 5 DA A "O4'" 1
ATOM 89 C "C3'" . DA A 1 5 ? 14.162 13.611 5.813 1.00 27.98 ? 5 DA A "C3'" 1
ATOM 90 O "O3'" . DA A 1 5 ? 15.347 13.982 5.132 1.00 28.35 ? 5 DA A "O3'" 1
ATOM 91 C "C2'" . DA A 1 5 ? 14.381 13.622 7.318 1.00 27.26 ? 5 DA A "C2'" 1
ATOM 92 C "C1'" . DA A 1 5 ? 13.061 14.090 7.905 1.00 25.75 ? 5 DA A "C1'" 1
ATOM 93 N N9 . DA A 1 5 ? 12.313 12.917 8.373 1.00 23.58 ? 5 DA A N9 1
ATOM 94 C C8 . DA A 1 5 ? 11.221 12.298 7.780 1.00 23.23 ? 5 DA A C8 1
ATOM 95 N N7 . DA A 1 5 ? 10.799 11.229 8.428 1.00 21.79 ? 5 DA A N7 1
ATOM 96 C C5 . DA A 1 5 ? 11.651 11.146 9.528 1.00 21.90 ? 5 DA A C5 1
ATOM 97 C C6 . DA A 1 5 ? 11.716 10.238 10.615 1.00 21.76 ? 5 DA A C6 1
ATOM 98 N N6 . DA A 1 5 ? 10.874 9.201 10.779 1.00 22.65 ? 5 DA A N6 1
ATOM 99 N N1 . DA A 1 5 ? 12.679 10.433 11.536 1.00 22.04 ? 5 DA A N1 1
ATOM 100 C C2 . DA A 1 5 ? 13.513 11.479 11.382 1.00 22.57 ? 5 DA A C2 1
ATOM 101 N N3 . DA A 1 5 ? 13.548 12.408 10.412 1.00 22.63 ? 5 DA A N3 1
ATOM 102 C C4 . DA A 1 5 ? 12.585 12.181 9.507 1.00 23.52 ? 5 DA A C4 1
ATOM 103 P P . DC A 1 6 ? 16.267 12.812 4.537 1.00 31.39 ? 6 DC A P 1
ATOM 104 O OP1 . DC A 1 6 ? 17.307 13.445 3.692 1.00 30.85 ? 6 DC A OP1 1
ATOM 105 O OP2 . DC A 1 6 ? 15.417 11.723 4.002 1.00 28.73 ? 6 DC A OP2 1
ATOM 106 O "O5'" . DC A 1 6 ? 16.945 12.208 5.835 1.00 29.12 ? 6 DC A "O5'" 1
ATOM 107 C "C5'" . DC A 1 6 ? 17.703 13.048 6.690 1.00 29.23 ? 6 DC A "C5'" 1
ATOM 108 C "C4'" . DC A 1 6 ? 18.196 12.270 7.881 1.00 28.69 ? 6 DC A "C4'" 1
ATOM 109 O "O4'" . DC A 1 6 ? 17.074 12.107 8.786 1.00 26.93 ? 6 DC A "O4'" 1
ATOM 110 C "C3'" . DC A 1 6 ? 18.619 10.852 7.528 1.00 27.85 ? 6 DC A "C3'" 1
ATOM 111 O "O3'" . DC A 1 6 ? 20.012 10.712 7.294 1.00 29.58 ? 6 DC A "O3'" 1
ATOM 112 C "C2'" . DC A 1 6 ? 18.229 10.040 8.746 1.00 27.10 ? 6 DC A "C2'" 1
ATOM 113 C "C1'" . DC A 1 6 ? 17.152 10.849 9.439 1.00 25.99 ? 6 DC A "C1'" 1
ATOM 114 N N1 . DC A 1 6 ? 15.922 10.091 9.143 1.00 24.77 ? 6 DC A N1 1
ATOM 115 C C2 . DC A 1 6 ? 15.506 9.105 10.062 1.00 24.07 ? 6 DC A C2 1
ATOM 116 O O2 . DC A 1 6 ? 16.196 8.912 11.082 1.00 26.75 ? 6 DC A O2 1
ATOM 117 N N3 . DC A 1 6 ? 14.393 8.375 9.813 1.00 24.54 ? 6 DC A N3 1
ATOM 118 C C4 . DC A 1 6 ? 13.702 8.548 8.680 1.00 23.35 ? 6 DC A C4 1
ATOM 119 N N4 . DC A 1 6 ? 12.636 7.752 8.465 1.00 24.14 ? 6 DC A N4 1
ATOM 120 C C5 . DC A 1 6 ? 14.077 9.530 7.708 1.00 24.84 ? 6 DC A C5 1
ATOM 121 C C6 . DC A 1 6 ? 15.210 10.301 7.991 1.00 23.86 ? 6 DC A C6 1
ATOM 122 P P . DA A 1 7 ? 20.530 9.419 6.512 1.00 31.36 ? 7 DA A P 1
ATOM 123 O OP1 . DA A 1 7 ? 21.975 9.710 6.164 1.00 30.36 ? 7 DA A OP1 1
ATOM 124 O OP2 . DA A 1 7 ? 19.613 8.942 5.450 1.00 29.18 ? 7 DA A OP2 1
ATOM 125 O "O5'" . DA A 1 7 ? 20.544 8.332 7.667 1.00 28.95 ? 7 DA A "O5'" 1
ATOM 126 C "C5'" . DA A 1 7 ? 21.297 8.573 8.856 1.00 28.92 ? 7 DA A "C5'" 1
ATOM 127 C "C4'" . DA A 1 7 ? 21.288 7.362 9.758 1.00 28.92 ? 7 DA A "C4'" 1
ATOM 128 O "O4'" . DA A 1 7 ? 19.977 7.283 10.369 1.00 27.95 ? 7 DA A "O4'" 1
ATOM 129 C "C3'" . DA A 1 7 ? 21.497 6.033 9.046 1.00 29.50 ? 7 DA A "C3'" 1
ATOM 130 O "O3'" . DA A 1 7 ? 22.804 5.499 9.165 1.00 32.20 ? 7 DA A "O3'" 1
ATOM 131 C "C2'" . DA A 1 7 ? 20.510 5.080 9.692 1.00 28.06 ? 7 DA A "C2'" 1
ATOM 132 C "C1'" . DA A 1 7 ? 19.517 5.939 10.446 1.00 27.47 ? 7 DA A "C1'" 1
ATOM 133 N N9 . DA A 1 7 ? 18.237 5.870 9.731 1.00 24.18 ? 7 DA A N9 1
ATOM 134 C C8 . DA A 1 7 ? 17.821 6.616 8.667 1.00 23.74 ? 7 DA A C8 1
ATOM 135 N N7 . DA A 1 7 ? 16.632 6.277 8.209 1.00 25.18 ? 7 DA A N7 1
ATOM 136 C C5 . DA A 1 7 ? 16.236 5.245 9.048 1.00 23.37 ? 7 DA A C5 1
ATOM 137 C C6 . DA A 1 7 ? 15.064 4.482 9.113 1.00 23.10 ? 7 DA A C6 1
ATOM 138 N N6 . DA A 1 7 ? 14.025 4.668 8.307 1.00 23.26 ? 7 DA A N6 1
ATOM 139 N N1 . DA A 1 7 ? 14.985 3.527 10.061 1.00 23.48 ? 7 DA A N1 1
ATOM 140 C C2 . DA A 1 7 ? 16.013 3.386 10.913 1.00 26.15 ? 7 DA A C2 1
ATOM 141 N N3 . DA A 1 7 ? 17.166 4.068 10.968 1.00 26.15 ? 7 DA A N3 1
ATOM 142 C C4 . DA A 1 7 ? 17.213 4.987 9.993 1.00 25.24 ? 7 DA A C4 1
ATOM 143 P P . DC A 1 8 ? 23.284 4.405 8.084 1.00 35.37 ? 8 DC A P 1
ATOM 144 O OP1 . DC A 1 8 ? 24.775 4.356 8.235 1.00 34.40 ? 8 DC A OP1 1
ATOM 145 O OP2 . DC A 1 8 ? 22.703 4.700 6.759 1.00 34.66 ? 8 DC A OP2 1
ATOM 146 O "O5'" . DC A 1 8 ? 22.614 3.065 8.597 1.00 34.09 ? 8 DC A "O5'" 1
ATOM 147 C "C5'" . DC A 1 8 ? 22.897 2.580 9.906 1.00 37.18 ? 8 DC A "C5'" 1
ATOM 148 C "C4'" . DC A 1 8 ? 22.169 1.282 10.164 1.00 37.20 ? 8 DC A "C4'" 1
ATOM 149 O "O4'" . DC A 1 8 ? 20.735 1.508 10.127 1.00 37.26 ? 8 DC A "O4'" 1
ATOM 150 C "C3'" . DC A 1 8 ? 22.453 0.175 9.144 1.00 37.70 ? 8 DC A "C3'" 1
ATOM 151 O "O3'" . DC A 1 8 ? 22.279 -1.095 9.761 1.00 39.24 ? 8 DC A "O3'" 1
ATOM 152 C "C2'" . DC A 1 8 ? 21.270 0.277 8.205 1.00 37.63 ? 8 DC A "C2'" 1
ATOM 153 C "C1'" . DC A 1 8 ? 20.152 0.620 9.185 1.00 37.02 ? 8 DC A "C1'" 1
ATOM 154 N N1 . DC A 1 8 ? 19.038 1.303 8.487 1.00 33.66 ? 8 DC A N1 1
ATOM 155 C C2 . DC A 1 8 ? 17.746 0.774 8.610 1.00 33.54 ? 8 DC A C2 1
ATOM 156 O O2 . DC A 1 8 ? 17.565 -0.213 9.341 1.00 33.73 ? 8 DC A O2 1
ATOM 157 N N3 . DC A 1 8 ? 16.723 1.340 7.926 1.00 30.77 ? 8 DC A N3 1
ATOM 158 C C4 . DC A 1 8 ? 16.940 2.389 7.129 1.00 29.41 ? 8 DC A C4 1
ATOM 159 N N4 . DC A 1 8 ? 15.907 2.870 6.452 1.00 27.48 ? 8 DC A N4 1
ATOM 160 C C5 . DC A 1 8 ? 18.232 2.979 6.991 1.00 30.68 ? 8 DC A C5 1
ATOM 161 C C6 . DC A 1 8 ? 19.258 2.405 7.709 1.00 32.70 ? 8 DC A C6 1
HETATM 162 O O . HOH B 2 . ? 15.110 14.755 10.709 1.00 25.48 ? 9 HOH A O 1
HETATM 163 O O . HOH B 2 . ? -5.231 3.798 15.405 1.00 32.64 ? 10 HOH A O 1
HETATM 164 O O . HOH B 2 . ? 15.766 7.149 5.595 1.00 37.33 ? 11 HOH A O 1
HETATM 165 O O . HOH B 2 . ? 3.726 8.709 12.359 1.00 37.82 ? 12 HOH A O 1
HETATM 166 O O . HOH B 2 . ? -1.406 6.508 20.195 1.00 37.74 ? 13 HOH A O 1
HETATM 167 O O . HOH B 2 . ? 19.212 6.055 5.199 1.00 42.66 ? 14 HOH A O 1
HETATM 168 O O . HOH B 2 . ? 18.820 3.088 12.918 1.00 42.06 ? 15 HOH A O 1
HETATM 169 O O . HOH B 2 . ? -0.185 5.968 15.797 1.00 38.03 ? 16 HOH A O 1
HETATM 170 O O . HOH B 2 . ? 21.064 4.439 4.958 1.00 42.51 ? 17 HOH A O 1
HETATM 171 O O . HOH B 2 . ? 2.042 9.592 19.383 1.00 39.11 ? 18 HOH A O 1
HETATM 172 O O . HOH B 2 . ? -4.235 4.052 12.935 1.00 42.79 ? 19 HOH A O 1
HETATM 173 O O . HOH B 2 . ? 25.960 4.255 10.518 1.00 43.07 ? 20 HOH A O 1
HETATM 174 O O . HOH B 2 . ? -3.439 5.961 9.424 1.00 44.67 ? 21 HOH A O 1
HETATM 175 O O . HOH B 2 . ? 21.455 8.670 2.909 1.00 51.67 ? 22 HOH A O 1
HETATM 176 O O . HOH B 2 . ? 19.960 11.384 2.314 1.00 51.99 ? 23 HOH A O 1
HETATM 177 O O . HOH B 2 . ? 3.854 12.125 19.110 1.00 51.38 ? 24 HOH A O 1
HETATM 178 O O . HOH B 2 . ? 8.879 11.041 5.369 1.00 52.01 ? 25 HOH A O 1
HETATM 179 O O . HOH B 2 . ? 5.770 9.460 14.900 1.00 51.88 ? 26 HOH A O 1
HETATM 180 O O . HOH B 2 . ? 0.098 17.025 10.880 1.00 51.20 ? 27 HOH A O 1
HETATM 181 O O . HOH B 2 . ? 3.718 8.455 8.402 1.00 54.04 ? 28 HOH A O 1
HETATM 182 O O . HOH B 2 . ? 0.520 14.992 3.428 1.00 58.53 ? 29 HOH A O 1
HETATM 183 O O . HOH B 2 . ? 4.928 10.054 17.323 1.00 58.76 ? 30 HOH A O 1
HETATM 184 O O . HOH B 2 . ? 2.625 6.240 12.326 1.00 61.97 ? 31 HOH A O 1
HETATM 185 O O . HOH B 2 . ? 3.312 9.139 5.556 1.00 54.15 ? 32 HOH A O 1
HETATM 186 O O . HOH B 2 . ? 9.196 9.138 7.351 1.00 36.97 ? 33 HOH A O 1
HETATM 187 O O . HOH B 2 . ? 7.120 9.550 4.824 1.00 50.26 ? 34 HOH A O 1
HETATM 188 O O . HOH B 2 . ? 13.280 6.094 5.610 1.00 49.75 ? 35 HOH A O 1
HETATM 189 O O . HOH B 2 . ? 2.467 5.830 16.299 1.00 57.04 ? 36 HOH A O 1
HETATM 190 O O . HOH B 2 . ? -1.252 15.986 5.791 1.00 50.67 ? 37 HOH A O 1
HETATM 191 O O . HOH B 2 . ? 1.598 8.141 10.802 1.00 62.40 ? 38 HOH A O 1
HETATM 192 O O . HOH B 2 . ? -4.041 8.028 7.451 1.00 58.38 ? 39 HOH A O 1
HETATM 193 O O . HOH B 2 . ? -0.743 3.105 16.325 1.00 58.80 ? 40 HOH A O 1
HETATM 194 O O . HOH B 2 . ? 6.896 8.044 12.629 0.50 53.22 ? 41 HOH A O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG GUA A . n
A 1 2 DT 2 2 2 DT THY A . n
A 1 3 DG 3 3 3 DG GUA A . n
A 1 4 BRU 4 4 4 BRU BRU A . n
A 1 5 DA 5 5 5 DA ADE A . n
A 1 6 DC 6 6 6 DC CYT A . n
A 1 7 DA 7 7 7 DA ADE A . n
A 1 8 DC 8 8 8 DC CYT A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 9 1 HOH HOH A .
B 2 HOH 2 10 2 HOH HOH A .
B 2 HOH 3 11 3 HOH HOH A .
B 2 HOH 4 12 4 HOH HOH A .
B 2 HOH 5 13 5 HOH HOH A .
B 2 HOH 6 14 6 HOH HOH A .
B 2 HOH 7 15 7 HOH HOH A .
B 2 HOH 8 16 8 HOH HOH A .
B 2 HOH 9 17 9 HOH HOH A .
B 2 HOH 10 18 10 HOH HOH A .
B 2 HOH 11 19 11 HOH HOH A .
B 2 HOH 12 20 12 HOH HOH A .
B 2 HOH 13 21 13 HOH HOH A .
B 2 HOH 14 22 14 HOH HOH A .
B 2 HOH 15 23 15 HOH HOH A .
B 2 HOH 16 24 16 HOH HOH A .
B 2 HOH 17 25 17 HOH HOH A .
B 2 HOH 18 26 18 HOH HOH A .
B 2 HOH 19 27 19 HOH HOH A .
B 2 HOH 20 28 20 HOH HOH A .
B 2 HOH 21 29 21 HOH HOH A .
B 2 HOH 22 30 22 HOH HOH A .
B 2 HOH 23 31 23 HOH HOH A .
B 2 HOH 24 32 24 HOH HOH A .
B 2 HOH 25 33 25 HOH HOH A .
B 2 HOH 26 34 26 HOH HOH A .
B 2 HOH 27 35 27 HOH HOH A .
B 2 HOH 28 36 28 HOH HOH A .
B 2 HOH 29 37 29 HOH HOH A .
B 2 HOH 30 38 30 HOH HOH A .
B 2 HOH 31 39 31 HOH HOH A .
B 2 HOH 32 40 32 HOH HOH A .
B 2 HOH 33 41 33 HOH HOH A .
#
_pdbx_struct_mod_residue.id 1
_pdbx_struct_mod_residue.label_asym_id A
_pdbx_struct_mod_residue.label_comp_id BRU
_pdbx_struct_mod_residue.label_seq_id 4
_pdbx_struct_mod_residue.auth_asym_id A
_pdbx_struct_mod_residue.auth_comp_id BRU
_pdbx_struct_mod_residue.auth_seq_id 4
_pdbx_struct_mod_residue.PDB_ins_code ?
_pdbx_struct_mod_residue.parent_comp_id DU
_pdbx_struct_mod_residue.details ?
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 24.2700000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2006-05-23
2 'Structure model' 1 1 2008-05-01
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2023-08-30
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' pdbx_initial_refinement_model
5 4 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
CNS refinement 1.1 ? 1
CBASS 'data collection' . ? 2
HKL-2000 'data scaling' . ? 3
CNS phasing . ? 4
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 C5 A DT 2 ? ? C6 A DT 2 ? ? 1.394 1.339 0.055 0.007 N
2 1 C5 A DC 6 ? ? C6 A DC 6 ? ? 1.399 1.339 0.060 0.008 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 100.06 108.00 -7.94 0.70 N
2 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 100.42 108.00 -7.58 0.70 N
3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 100.27 108.00 -7.73 0.70 N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
BRU N1 N N N 1
BRU C2 C N N 2
BRU N3 N N N 3
BRU C4 C N N 4
BRU C5 C N N 5
BRU C6 C N N 6
BRU O2 O N N 7
BRU O4 O N N 8
BRU BR BR N N 9
BRU "C1'" C N R 10
BRU "C2'" C N N 11
BRU "C3'" C N S 12
BRU "C4'" C N R 13
BRU "O3'" O N N 14
BRU "O4'" O N N 15
BRU "C5'" C N N 16
BRU "O5'" O N N 17
BRU P P N N 18
BRU OP1 O N N 19
BRU OP2 O N N 20
BRU OP3 O N N 21
BRU HN3 H N N 22
BRU H6 H N N 23
BRU "H1'" H N N 24
BRU "H2'" H N N 25
BRU "H2''" H N N 26
BRU "H3'" H N N 27
BRU "H4'" H N N 28
BRU "HO3'" H N N 29
BRU "H5'" H N N 30
BRU "H5''" H N N 31
BRU HOP2 H N N 32
BRU HOP3 H N N 33
DA OP3 O N N 34
DA P P N N 35
DA OP1 O N N 36
DA OP2 O N N 37
DA "O5'" O N N 38
DA "C5'" C N N 39
DA "C4'" C N R 40
DA "O4'" O N N 41
DA "C3'" C N S 42
DA "O3'" O N N 43
DA "C2'" C N N 44
DA "C1'" C N R 45
DA N9 N Y N 46
DA C8 C Y N 47
DA N7 N Y N 48
DA C5 C Y N 49
DA C6 C Y N 50
DA N6 N N N 51
DA N1 N Y N 52
DA C2 C Y N 53
DA N3 N Y N 54
DA C4 C Y N 55
DA HOP3 H N N 56
DA HOP2 H N N 57
DA "H5'" H N N 58
DA "H5''" H N N 59
DA "H4'" H N N 60
DA "H3'" H N N 61
DA "HO3'" H N N 62
DA "H2'" H N N 63
DA "H2''" H N N 64
DA "H1'" H N N 65
DA H8 H N N 66
DA H61 H N N 67
DA H62 H N N 68
DA H2 H N N 69
DC OP3 O N N 70
DC P P N N 71
DC OP1 O N N 72
DC OP2 O N N 73
DC "O5'" O N N 74
DC "C5'" C N N 75
DC "C4'" C N R 76
DC "O4'" O N N 77
DC "C3'" C N S 78
DC "O3'" O N N 79
DC "C2'" C N N 80
DC "C1'" C N R 81
DC N1 N N N 82
DC C2 C N N 83
DC O2 O N N 84
DC N3 N N N 85
DC C4 C N N 86
DC N4 N N N 87
DC C5 C N N 88
DC C6 C N N 89
DC HOP3 H N N 90
DC HOP2 H N N 91
DC "H5'" H N N 92
DC "H5''" H N N 93
DC "H4'" H N N 94
DC "H3'" H N N 95
DC "HO3'" H N N 96
DC "H2'" H N N 97
DC "H2''" H N N 98
DC "H1'" H N N 99
DC H41 H N N 100
DC H42 H N N 101
DC H5 H N N 102
DC H6 H N N 103
DG OP3 O N N 104
DG P P N N 105
DG OP1 O N N 106
DG OP2 O N N 107
DG "O5'" O N N 108
DG "C5'" C N N 109
DG "C4'" C N R 110
DG "O4'" O N N 111
DG "C3'" C N S 112
DG "O3'" O N N 113
DG "C2'" C N N 114
DG "C1'" C N R 115
DG N9 N Y N 116
DG C8 C Y N 117
DG N7 N Y N 118
DG C5 C Y N 119
DG C6 C N N 120
DG O6 O N N 121
DG N1 N N N 122
DG C2 C N N 123
DG N2 N N N 124
DG N3 N N N 125
DG C4 C Y N 126
DG HOP3 H N N 127
DG HOP2 H N N 128
DG "H5'" H N N 129
DG "H5''" H N N 130
DG "H4'" H N N 131
DG "H3'" H N N 132
DG "HO3'" H N N 133
DG "H2'" H N N 134
DG "H2''" H N N 135
DG "H1'" H N N 136
DG H8 H N N 137
DG H1 H N N 138
DG H21 H N N 139
DG H22 H N N 140
DT OP3 O N N 141
DT P P N N 142
DT OP1 O N N 143
DT OP2 O N N 144
DT "O5'" O N N 145
DT "C5'" C N N 146
DT "C4'" C N R 147
DT "O4'" O N N 148
DT "C3'" C N S 149
DT "O3'" O N N 150
DT "C2'" C N N 151
DT "C1'" C N R 152
DT N1 N N N 153
DT C2 C N N 154
DT O2 O N N 155
DT N3 N N N 156
DT C4 C N N 157
DT O4 O N N 158
DT C5 C N N 159
DT C7 C N N 160
DT C6 C N N 161
DT HOP3 H N N 162
DT HOP2 H N N 163
DT "H5'" H N N 164
DT "H5''" H N N 165
DT "H4'" H N N 166
DT "H3'" H N N 167
DT "HO3'" H N N 168
DT "H2'" H N N 169
DT "H2''" H N N 170
DT "H1'" H N N 171
DT H3 H N N 172
DT H71 H N N 173
DT H72 H N N 174
DT H73 H N N 175
DT H6 H N N 176
HOH O O N N 177
HOH H1 H N N 178
HOH H2 H N N 179
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BRU N1 C2 sing N N 1
BRU N1 C6 sing N N 2
BRU N1 "C1'" sing N N 3
BRU C2 N3 sing N N 4
BRU C2 O2 doub N N 5
BRU N3 C4 sing N N 6
BRU N3 HN3 sing N N 7
BRU C4 C5 sing N N 8
BRU C4 O4 doub N N 9
BRU C5 C6 doub N N 10
BRU C5 BR sing N N 11
BRU C6 H6 sing N N 12
BRU "C1'" "C2'" sing N N 13
BRU "C1'" "O4'" sing N N 14
BRU "C1'" "H1'" sing N N 15
BRU "C2'" "C3'" sing N N 16
BRU "C2'" "H2'" sing N N 17
BRU "C2'" "H2''" sing N N 18
BRU "C3'" "C4'" sing N N 19
BRU "C3'" "O3'" sing N N 20
BRU "C3'" "H3'" sing N N 21
BRU "C4'" "O4'" sing N N 22
BRU "C4'" "C5'" sing N N 23
BRU "C4'" "H4'" sing N N 24
BRU "O3'" "HO3'" sing N N 25
BRU "C5'" "O5'" sing N N 26
BRU "C5'" "H5'" sing N N 27
BRU "C5'" "H5''" sing N N 28
BRU "O5'" P sing N N 29
BRU P OP1 doub N N 30
BRU P OP2 sing N N 31
BRU P OP3 sing N N 32
BRU OP2 HOP2 sing N N 33
BRU OP3 HOP3 sing N N 34
DA OP3 P sing N N 35
DA OP3 HOP3 sing N N 36
DA P OP1 doub N N 37
DA P OP2 sing N N 38
DA P "O5'" sing N N 39
DA OP2 HOP2 sing N N 40
DA "O5'" "C5'" sing N N 41
DA "C5'" "C4'" sing N N 42
DA "C5'" "H5'" sing N N 43
DA "C5'" "H5''" sing N N 44
DA "C4'" "O4'" sing N N 45
DA "C4'" "C3'" sing N N 46
DA "C4'" "H4'" sing N N 47
DA "O4'" "C1'" sing N N 48
DA "C3'" "O3'" sing N N 49
DA "C3'" "C2'" sing N N 50
DA "C3'" "H3'" sing N N 51
DA "O3'" "HO3'" sing N N 52
DA "C2'" "C1'" sing N N 53
DA "C2'" "H2'" sing N N 54
DA "C2'" "H2''" sing N N 55
DA "C1'" N9 sing N N 56
DA "C1'" "H1'" sing N N 57
DA N9 C8 sing Y N 58
DA N9 C4 sing Y N 59
DA C8 N7 doub Y N 60
DA C8 H8 sing N N 61
DA N7 C5 sing Y N 62
DA C5 C6 sing Y N 63
DA C5 C4 doub Y N 64
DA C6 N6 sing N N 65
DA C6 N1 doub Y N 66
DA N6 H61 sing N N 67
DA N6 H62 sing N N 68
DA N1 C2 sing Y N 69
DA C2 N3 doub Y N 70
DA C2 H2 sing N N 71
DA N3 C4 sing Y N 72
DC OP3 P sing N N 73
DC OP3 HOP3 sing N N 74
DC P OP1 doub N N 75
DC P OP2 sing N N 76
DC P "O5'" sing N N 77
DC OP2 HOP2 sing N N 78
DC "O5'" "C5'" sing N N 79
DC "C5'" "C4'" sing N N 80
DC "C5'" "H5'" sing N N 81
DC "C5'" "H5''" sing N N 82
DC "C4'" "O4'" sing N N 83
DC "C4'" "C3'" sing N N 84
DC "C4'" "H4'" sing N N 85
DC "O4'" "C1'" sing N N 86
DC "C3'" "O3'" sing N N 87
DC "C3'" "C2'" sing N N 88
DC "C3'" "H3'" sing N N 89
DC "O3'" "HO3'" sing N N 90
DC "C2'" "C1'" sing N N 91
DC "C2'" "H2'" sing N N 92
DC "C2'" "H2''" sing N N 93
DC "C1'" N1 sing N N 94
DC "C1'" "H1'" sing N N 95
DC N1 C2 sing N N 96
DC N1 C6 sing N N 97
DC C2 O2 doub N N 98
DC C2 N3 sing N N 99
DC N3 C4 doub N N 100
DC C4 N4 sing N N 101
DC C4 C5 sing N N 102
DC N4 H41 sing N N 103
DC N4 H42 sing N N 104
DC C5 C6 doub N N 105
DC C5 H5 sing N N 106
DC C6 H6 sing N N 107
DG OP3 P sing N N 108
DG OP3 HOP3 sing N N 109
DG P OP1 doub N N 110
DG P OP2 sing N N 111
DG P "O5'" sing N N 112
DG OP2 HOP2 sing N N 113
DG "O5'" "C5'" sing N N 114
DG "C5'" "C4'" sing N N 115
DG "C5'" "H5'" sing N N 116
DG "C5'" "H5''" sing N N 117
DG "C4'" "O4'" sing N N 118
DG "C4'" "C3'" sing N N 119
DG "C4'" "H4'" sing N N 120
DG "O4'" "C1'" sing N N 121
DG "C3'" "O3'" sing N N 122
DG "C3'" "C2'" sing N N 123
DG "C3'" "H3'" sing N N 124
DG "O3'" "HO3'" sing N N 125
DG "C2'" "C1'" sing N N 126
DG "C2'" "H2'" sing N N 127
DG "C2'" "H2''" sing N N 128
DG "C1'" N9 sing N N 129
DG "C1'" "H1'" sing N N 130
DG N9 C8 sing Y N 131
DG N9 C4 sing Y N 132
DG C8 N7 doub Y N 133
DG C8 H8 sing N N 134
DG N7 C5 sing Y N 135
DG C5 C6 sing N N 136
DG C5 C4 doub Y N 137
DG C6 O6 doub N N 138
DG C6 N1 sing N N 139
DG N1 C2 sing N N 140
DG N1 H1 sing N N 141
DG C2 N2 sing N N 142
DG C2 N3 doub N N 143
DG N2 H21 sing N N 144
DG N2 H22 sing N N 145
DG N3 C4 sing N N 146
DT OP3 P sing N N 147
DT OP3 HOP3 sing N N 148
DT P OP1 doub N N 149
DT P OP2 sing N N 150
DT P "O5'" sing N N 151
DT OP2 HOP2 sing N N 152
DT "O5'" "C5'" sing N N 153
DT "C5'" "C4'" sing N N 154
DT "C5'" "H5'" sing N N 155
DT "C5'" "H5''" sing N N 156
DT "C4'" "O4'" sing N N 157
DT "C4'" "C3'" sing N N 158
DT "C4'" "H4'" sing N N 159
DT "O4'" "C1'" sing N N 160
DT "C3'" "O3'" sing N N 161
DT "C3'" "C2'" sing N N 162
DT "C3'" "H3'" sing N N 163
DT "O3'" "HO3'" sing N N 164
DT "C2'" "C1'" sing N N 165
DT "C2'" "H2'" sing N N 166
DT "C2'" "H2''" sing N N 167
DT "C1'" N1 sing N N 168
DT "C1'" "H1'" sing N N 169
DT N1 C2 sing N N 170
DT N1 C6 sing N N 171
DT C2 O2 doub N N 172
DT C2 N3 sing N N 173
DT N3 C4 sing N N 174
DT N3 H3 sing N N 175
DT C4 O4 doub N N 176
DT C4 C5 sing N N 177
DT C5 C7 sing N N 178
DT C5 C6 doub N N 179
DT C7 H71 sing N N 180
DT C7 H72 sing N N 181
DT C7 H73 sing N N 182
DT C6 H6 sing N N 183
HOH O H1 sing N N 184
HOH O H2 sing N N 185
#
_ndb_struct_conf_na.entry_id 2H05
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 7_556 -0.260 -0.148 -0.177 -15.589 -8.929 -3.969 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A DT 2 1_555 A DA 7 7_556 0.043 -0.145 -0.006 -2.194 -8.738 3.849 2 A_DT2:DA7_A A 2 ? A 7 ? 20 1
1 A DG 3 1_555 A DC 6 7_556 -0.281 -0.181 0.103 -7.436 -13.928 3.349 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1
1 A BRU 4 1_555 A DA 5 7_556 0.057 -0.094 0.314 -2.498 -9.630 -3.112 4 A_BRU4:DA5_A A 4 ? A 5 ? 20 1
1 A DA 5 1_555 A BRU 4 7_556 -0.057 -0.094 0.314 2.498 -9.630 -3.112 5 A_DA5:BRU4_A A 5 ? A 4 ? 20 1
1 A DC 6 1_555 A DG 3 7_556 0.281 -0.181 0.103 7.436 -13.928 3.349 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1
1 A DA 7 1_555 A DT 2 7_556 -0.043 -0.145 -0.006 2.194 -8.738 3.849 7 A_DA7:DT2_A A 7 ? A 2 ? 20 1
1 A DC 8 1_555 A DG 1 7_556 0.260 -0.148 -0.177 15.589 -8.929 -3.969 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 7_556 A DT 2 1_555 A DA 7 7_556 0.458 -1.202 3.063 -0.227 11.328 30.725 -3.847 -0.848 2.473 20.523
0.411 32.700 1 AA_DG1DT2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A DT 2 1_555 A DA 7 7_556 A DG 3 1_555 A DC 6 7_556 0.326 -1.431 3.329 -0.183 8.569 30.127 -4.206 -0.638 2.823 16.080
0.343 31.295 2 AA_DT2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DG 3 1_555 A DC 6 7_556 A BRU 4 1_555 A DA 5 7_556 -0.456 -1.442 3.094 -0.781 3.887 36.448 -2.785 0.626 2.939 6.192
1.244 36.656 3 AA_DG3BRU4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A BRU 4 1_555 A DA 5 7_556 A DA 5 1_555 A BRU 4 7_556 0.000 -1.416 3.005 0.000 4.816 28.445 -3.791 0.000 2.734 9.712
0.000 28.841 4 AA_BRU4DA5:BRU4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DA 5 1_555 A BRU 4 7_556 A DC 6 1_555 A DG 3 7_556 0.456 -1.442 3.094 0.781 3.887 36.448 -2.785 -0.626 2.939 6.192
-1.244 36.656 5 AA_DA5DC6:DG3BRU4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A DC 6 1_555 A DG 3 7_556 A DA 7 1_555 A DT 2 7_556 -0.326 -1.431 3.329 0.183 8.569 30.127 -4.206 0.638 2.823 16.080
-0.343 31.295 6 AA_DC6DA7:DT2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A DA 7 1_555 A DT 2 7_556 A DC 8 1_555 A DG 1 7_556 -0.458 -1.202 3.063 0.227 11.328 30.725 -3.847 0.848 2.473 20.523
-0.411 32.700 7 AA_DA7DC8:DG1DT2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1Z7I
_pdbx_initial_refinement_model.details 'pdb entry 1Z7I'
#