data_2GJB
#
_entry.id 2GJB
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2GJB pdb_00002gjb 10.2210/pdb2gjb/pdb
NDB DD0079 ? ?
RCSB RCSB037188 ? ?
WWPDB D_1000037188 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2007-04-10
2 'Structure model' 1 1 2008-05-01
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-10-18
5 'Structure model' 1 4 2024-02-14
6 'Structure model' 1 5 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' Advisory
4 4 'Structure model' 'Refinement description'
5 5 'Structure model' 'Data collection'
6 5 'Structure model' 'Database references'
7 5 'Structure model' 'Derived calculations'
8 5 'Structure model' 'Structure summary'
9 6 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms
2 4 'Structure model' software
3 5 'Structure model' chem_comp
4 5 'Structure model' chem_comp_atom
5 5 'Structure model' chem_comp_bond
6 5 'Structure model' database_2
7 5 'Structure model' diffrn_source
8 5 'Structure model' struct_conn
9 5 'Structure model' struct_site
10 6 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_software.classification'
2 4 'Structure model' '_software.name'
3 5 'Structure model' '_chem_comp.pdbx_synonyms'
4 5 'Structure model' '_database_2.pdbx_DOI'
5 5 'Structure model' '_database_2.pdbx_database_accession'
6 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site'
7 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
8 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
9 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
10 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'
11 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
12 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'
13 5 'Structure model' '_struct_conn.ptnr1_label_seq_id'
14 5 'Structure model' '_struct_conn.ptnr1_symmetry'
15 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
16 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
17 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
18 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'
19 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'
20 5 'Structure model' '_struct_conn.ptnr2_label_seq_id'
21 5 'Structure model' '_struct_conn.ptnr2_symmetry'
22 5 'Structure model' '_struct_site.pdbx_auth_asym_id'
23 5 'Structure model' '_struct_site.pdbx_auth_comp_id'
24 5 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 2GJB
_pdbx_database_status.recvd_initial_deposition_date 2006-03-30
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 2GB9
_pdbx_database_related.details .
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Gan, Y.' 1
'Cardin, C.J.' 2
'Denny, W.A.' 3
#
_citation.id primary
_citation.title
'Crosslinking of DNA duplexes: X-ray crystal structure of an unsubstituted bisacridine with oligonucleotide d(CGTACG)'
_citation.journal_abbrev 'To be Published'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year ?
_citation.journal_id_ASTM ?
_citation.country ?
_citation.journal_id_ISSN ?
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Gan, Y.' 1 ?
primary 'Cardin, C.J.' 2 ?
primary 'Denny, W.A.' 3 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*CP*GP*TP*AP*CP*GP*)-3'" 1809.217 1 ? ? ? ?
2 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ?
3 non-polymer syn "N-ACRIDIN-9-YL-N'-[3-(ACRIDIN-9-YLAMINO)PROPYL]PROPANE-1,3-DIAMINE" 485.622 1 ? ? ? ?
4 water nat water 18.015 1 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGTACG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'POTASSIUM ION' K
3 "N-ACRIDIN-9-YL-N'-[3-(ACRIDIN-9-YLAMINO)PROPYL]PROPANE-1,3-DIAMINE" BMO
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DT n
1 4 DA n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
BMO non-polymer . "N-ACRIDIN-9-YL-N'-[3-(ACRIDIN-9-YLAMINO)PROPYL]PROPANE-1,3-DIAMINE"
'1,3-PROPANEDIAMINE; N-9-ACRIDINYL-N -[3-(9-ACRIDINYLAMINO)PROPYL]' 'C32 H31 N5' 485.622
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DT 3 3 3 DT T A . n
A 1 4 DA 4 4 4 DA A A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 K 1 7 1 K K A .
C 3 BMO 1 8 1 BMO MOX A .
D 4 HOH 1 9 1 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.2.0005 ? 1
MAR345 'data collection' . ? 2
MOSFLM 'data reduction' . ? 3
MOLREP phasing . ? 4
#
_cell.entry_id 2GJB
_cell.length_a 25.750
_cell.length_b 25.750
_cell.length_c 78.994
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 2GJB
_symmetry.space_group_name_H-M 'P 65 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 179
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 2GJB
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.00
_exptl_crystal.density_percent_sol 38.53
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pdbx_details
;The crystals grow in ten days from sitting drops containing 2mM DNA, 12mM spermine, 80mM strontium chloride, 20mM magnesium chloride, 10%MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
;
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 spermine ? ? ?
1 2 1 'strontium chloride' ? ? ?
1 3 1 'magnesium chloride' ? ? ?
1 4 1 MPD ? ? ?
1 5 1 H2O ? ? ?
1 6 2 'strontium chloride' ? ? ?
1 7 2 'magnesium chloride' ? ? ?
1 8 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.0
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X12'
_diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG'
_diffrn_source.pdbx_synchrotron_beamline X12
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.0
#
_reflns.entry_id 2GJB
_reflns.observed_criterion_sigma_I 2
_reflns.observed_criterion_sigma_F 2
_reflns.d_resolution_low 22.3
_reflns.d_resolution_high 1.9
_reflns.number_obs 1472
_reflns.number_all ?
_reflns.percent_possible_obs 99.3
_reflns.pdbx_Rmerge_I_obs 0.038
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 49.4
_reflns.B_iso_Wilson_estimate 57.431
_reflns.pdbx_redundancy 20.1
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.9
_reflns_shell.d_res_low 2
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_obs 0.312
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 9
_reflns_shell.pdbx_redundancy 15.3
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 204
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 2GJB
_refine.ls_number_reflns_obs 890
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.00
_refine.ls_d_res_high 2.20
_refine.ls_percent_reflns_obs 99.36
_refine.ls_R_factor_obs 0.27223
_refine.ls_R_factor_all 0.358
_refine.ls_R_factor_R_work 0.27002
_refine.ls_R_factor_R_free 0.30508
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.8
_refine.ls_number_reflns_R_free 45
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.943
_refine.correlation_coeff_Fo_to_Fc_free 0.960
_refine.B_iso_mean 37.613
_refine.aniso_B[1][1] 2.09
_refine.aniso_B[2][2] 2.09
_refine.aniso_B[3][3] -3.14
_refine.aniso_B[1][2] 1.05
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model 'NDB ENTRY DD0018'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.398
_refine.pdbx_overall_ESU_R_Free 0.272
_refine.overall_SU_ML 0.150
_refine.overall_SU_B 5.648
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 20
_refine_hist.number_atoms_solvent 1
_refine_hist.number_atoms_total 141
_refine_hist.d_res_high 2.20
_refine_hist.d_res_low 8.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.022 0.021 ? 155 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 3.391 2.996 ? 233 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.165 0.200 ? 23 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.017 0.020 ? 77 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.274 0.200 ? 27 'X-RAY DIFFRACTION' ?
r_nbtor_refined 0.371 0.200 ? 85 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.322 0.200 ? 36 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.216 0.200 ? 5 'X-RAY DIFFRACTION' ?
r_scbond_it 3.483 3.000 ? 173 'X-RAY DIFFRACTION' ?
r_scangle_it 5.224 4.500 ? 233 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 2.200
_refine_ls_shell.d_res_low 2.253
_refine_ls_shell.number_reflns_R_work 58
_refine_ls_shell.R_factor_R_work 0.367
_refine_ls_shell.percent_reflns_obs 100.00
_refine_ls_shell.R_factor_R_free 0.583
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 4
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_database_PDB_matrix.entry_id 2GJB
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 2GJB
_struct.title
'Crosslinking of DNA duplexes: X-ray crystal structure of an unsubstituted bisacridine with the oligonucleotide d(CGTACG)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2GJB
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'DNA duplex, bis-intercalator, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 2GJB
_struct_ref.pdbx_db_accession 2GJB
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 2GJB
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 2GJB
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038
-0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 13.1656666667
#
_struct_biol.id 1
_struct_biol.details
;The second part of the biological assembly is generated
by the two fold axis
;
_struct_biol.pdbx_parent_biol_id ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale none ? C BMO . N17 ? ? ? 1_555 C BMO . C19 ? ? A BMO 8 A BMO 8 11_655 ? ? ? ? ? ? ? 1.607 ? ?
metalc1 metalc ? ? A DT 3 O4 ? ? ? 10_555 B K . K ? ? A DT 3 A K 7 1_555 ? ? ? ? ? ? ? 2.867 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 3 A DA 4 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 3 A DA 4 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 4 A DT 3 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 4 A DT 3 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A K 7 ? 1 'BINDING SITE FOR RESIDUE K A 7'
AC2 Software A BMO 8 ? 5 'BINDING SITE FOR RESIDUE BMO A 8'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 1 DT A 3 ? DT A 3 . ? 10_555 ?
2 AC2 5 DC A 1 ? DC A 1 . ? 1_555 ?
3 AC2 5 DC A 1 ? DC A 1 . ? 11_655 ?
4 AC2 5 DG A 2 ? DG A 2 . ? 1_555 ?
5 AC2 5 DC A 5 ? DC A 5 . ? 10_555 ?
6 AC2 5 DG A 6 ? DG A 6 . ? 10_555 ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "O3'" A DT 3 ? ? "C3'" A DT 3 ? ? 1.351 1.419 -0.068 0.006 N
2 1 "C1'" A DT 3 ? ? N1 A DT 3 ? ? 1.585 1.488 0.097 0.013 N
3 1 C2 A DC 5 ? ? N3 A DC 5 ? ? 1.305 1.353 -0.048 0.008 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.50 108.30 4.20 0.30 N
2 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 134.49 119.70 14.79 1.20 Y
3 1 "O3'" A DG 2 ? ? P A DT 3 ? ? "O5'" A DT 3 ? ? 86.37 104.00 -17.63 1.90 Y
4 1 "O5'" A DT 3 ? ? "C5'" A DT 3 ? ? "C4'" A DT 3 ? ? 104.22 109.40 -5.18 0.80 N
5 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? "C2'" A DT 3 ? ? 101.02 105.90 -4.88 0.80 N
6 1 N1 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 129.30 123.10 6.20 0.80 N
7 1 N3 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 118.58 122.30 -3.72 0.60 N
8 1 "O5'" A DA 4 ? ? P A DA 4 ? ? OP2 A DA 4 ? ? 118.22 110.70 7.52 1.20 N
9 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 100.10 108.00 -7.90 0.70 N
10 1 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 103.49 110.10 -6.61 1.00 N
11 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 110.35 106.80 3.55 0.50 N
12 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.00 108.30 2.70 0.30 N
13 1 C6 A DC 5 ? ? N1 A DC 5 ? ? C2 A DC 5 ? ? 123.23 120.30 2.93 0.40 N
14 1 N3 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 113.38 118.00 -4.62 0.70 N
15 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 101.13 104.50 -3.37 0.40 N
16 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.60 108.30 2.30 0.30 N
17 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 115.20 119.90 -4.70 0.70 N
18 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 123.60 119.90 3.70 0.60 N
19 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 124.12 128.60 -4.48 0.60 N
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text bis-intercalation
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id BMO
_pdbx_struct_special_symmetry.auth_seq_id 8
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id C
_pdbx_struct_special_symmetry.label_comp_id BMO
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
BMO N17 N N N 1
BMO C19 C N N 2
BMO C36 C N N 3
BMO C22 C N N 4
BMO N20 N N N 5
BMO C21 C Y N 6
BMO C27 C Y N 7
BMO C26 C Y N 8
BMO C25 C Y N 9
BMO C24 C Y N 10
BMO C23 C Y N 11
BMO C28 C Y N 12
BMO N29 N Y N 13
BMO C31 C Y N 14
BMO C30 C Y N 15
BMO C34 C Y N 16
BMO C35 C Y N 17
BMO C32 C Y N 18
BMO C33 C Y N 19
BMO C1 C N N 20
BMO C2 C N N 21
BMO C3 C N N 22
BMO N1 N N N 23
BMO C4 C Y N 24
BMO C5 C Y N 25
BMO C6 C Y N 26
BMO C7 C Y N 27
BMO C8 C Y N 28
BMO C9 C Y N 29
BMO C10 C Y N 30
BMO N2 N Y N 31
BMO C11 C Y N 32
BMO C12 C Y N 33
BMO C13 C Y N 34
BMO C14 C Y N 35
BMO C15 C Y N 36
BMO C16 C Y N 37
BMO H171 H N N 38
BMO H191 H N N 39
BMO H192 H N N 40
BMO H361 H N N 41
BMO H362 H N N 42
BMO H221 H N N 43
BMO H222 H N N 44
BMO HN20 H N N 45
BMO H26 H N N 46
BMO H25 H N N 47
BMO H24 H N N 48
BMO H23 H N N 49
BMO H34 H N N 50
BMO H35 H N N 51
BMO H32 H N N 52
BMO H33 H N N 53
BMO H11 H N N 54
BMO H12A H N N 55
BMO H21 H N N 56
BMO H22 H N N 57
BMO H31 H N N 58
BMO H32A H N N 59
BMO HN1 H N N 60
BMO H6 H N N 61
BMO H7 H N N 62
BMO H8 H N N 63
BMO H9 H N N 64
BMO H12 H N N 65
BMO H13 H N N 66
BMO H14 H N N 67
BMO H15 H N N 68
DA OP3 O N N 69
DA P P N N 70
DA OP1 O N N 71
DA OP2 O N N 72
DA "O5'" O N N 73
DA "C5'" C N N 74
DA "C4'" C N R 75
DA "O4'" O N N 76
DA "C3'" C N S 77
DA "O3'" O N N 78
DA "C2'" C N N 79
DA "C1'" C N R 80
DA N9 N Y N 81
DA C8 C Y N 82
DA N7 N Y N 83
DA C5 C Y N 84
DA C6 C Y N 85
DA N6 N N N 86
DA N1 N Y N 87
DA C2 C Y N 88
DA N3 N Y N 89
DA C4 C Y N 90
DA HOP3 H N N 91
DA HOP2 H N N 92
DA "H5'" H N N 93
DA "H5''" H N N 94
DA "H4'" H N N 95
DA "H3'" H N N 96
DA "HO3'" H N N 97
DA "H2'" H N N 98
DA "H2''" H N N 99
DA "H1'" H N N 100
DA H8 H N N 101
DA H61 H N N 102
DA H62 H N N 103
DA H2 H N N 104
DC OP3 O N N 105
DC P P N N 106
DC OP1 O N N 107
DC OP2 O N N 108
DC "O5'" O N N 109
DC "C5'" C N N 110
DC "C4'" C N R 111
DC "O4'" O N N 112
DC "C3'" C N S 113
DC "O3'" O N N 114
DC "C2'" C N N 115
DC "C1'" C N R 116
DC N1 N N N 117
DC C2 C N N 118
DC O2 O N N 119
DC N3 N N N 120
DC C4 C N N 121
DC N4 N N N 122
DC C5 C N N 123
DC C6 C N N 124
DC HOP3 H N N 125
DC HOP2 H N N 126
DC "H5'" H N N 127
DC "H5''" H N N 128
DC "H4'" H N N 129
DC "H3'" H N N 130
DC "HO3'" H N N 131
DC "H2'" H N N 132
DC "H2''" H N N 133
DC "H1'" H N N 134
DC H41 H N N 135
DC H42 H N N 136
DC H5 H N N 137
DC H6 H N N 138
DG OP3 O N N 139
DG P P N N 140
DG OP1 O N N 141
DG OP2 O N N 142
DG "O5'" O N N 143
DG "C5'" C N N 144
DG "C4'" C N R 145
DG "O4'" O N N 146
DG "C3'" C N S 147
DG "O3'" O N N 148
DG "C2'" C N N 149
DG "C1'" C N R 150
DG N9 N Y N 151
DG C8 C Y N 152
DG N7 N Y N 153
DG C5 C Y N 154
DG C6 C N N 155
DG O6 O N N 156
DG N1 N N N 157
DG C2 C N N 158
DG N2 N N N 159
DG N3 N N N 160
DG C4 C Y N 161
DG HOP3 H N N 162
DG HOP2 H N N 163
DG "H5'" H N N 164
DG "H5''" H N N 165
DG "H4'" H N N 166
DG "H3'" H N N 167
DG "HO3'" H N N 168
DG "H2'" H N N 169
DG "H2''" H N N 170
DG "H1'" H N N 171
DG H8 H N N 172
DG H1 H N N 173
DG H21 H N N 174
DG H22 H N N 175
DT OP3 O N N 176
DT P P N N 177
DT OP1 O N N 178
DT OP2 O N N 179
DT "O5'" O N N 180
DT "C5'" C N N 181
DT "C4'" C N R 182
DT "O4'" O N N 183
DT "C3'" C N S 184
DT "O3'" O N N 185
DT "C2'" C N N 186
DT "C1'" C N R 187
DT N1 N N N 188
DT C2 C N N 189
DT O2 O N N 190
DT N3 N N N 191
DT C4 C N N 192
DT O4 O N N 193
DT C5 C N N 194
DT C7 C N N 195
DT C6 C N N 196
DT HOP3 H N N 197
DT HOP2 H N N 198
DT "H5'" H N N 199
DT "H5''" H N N 200
DT "H4'" H N N 201
DT "H3'" H N N 202
DT "HO3'" H N N 203
DT "H2'" H N N 204
DT "H2''" H N N 205
DT "H1'" H N N 206
DT H3 H N N 207
DT H71 H N N 208
DT H72 H N N 209
DT H73 H N N 210
DT H6 H N N 211
HOH O O N N 212
HOH H1 H N N 213
HOH H2 H N N 214
K K K N N 215
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BMO N17 C19 sing N N 1
BMO N17 C1 sing N N 2
BMO N17 H171 sing N N 3
BMO C19 C36 sing N N 4
BMO C19 H191 sing N N 5
BMO C19 H192 sing N N 6
BMO C36 C22 sing N N 7
BMO C36 H361 sing N N 8
BMO C36 H362 sing N N 9
BMO C22 N20 sing N N 10
BMO C22 H221 sing N N 11
BMO C22 H222 sing N N 12
BMO N20 C21 sing N N 13
BMO N20 HN20 sing N N 14
BMO C21 C27 doub Y N 15
BMO C21 C30 sing Y N 16
BMO C27 C26 sing Y N 17
BMO C27 C28 sing Y N 18
BMO C26 C25 doub Y N 19
BMO C26 H26 sing N N 20
BMO C25 C24 sing Y N 21
BMO C25 H25 sing N N 22
BMO C24 C23 doub Y N 23
BMO C24 H24 sing N N 24
BMO C23 C28 sing Y N 25
BMO C23 H23 sing N N 26
BMO C28 N29 doub Y N 27
BMO N29 C31 sing Y N 28
BMO C31 C30 sing Y N 29
BMO C31 C33 doub Y N 30
BMO C30 C34 doub Y N 31
BMO C34 C35 sing Y N 32
BMO C34 H34 sing N N 33
BMO C35 C32 doub Y N 34
BMO C35 H35 sing N N 35
BMO C32 C33 sing Y N 36
BMO C32 H32 sing N N 37
BMO C33 H33 sing N N 38
BMO C1 C2 sing N N 39
BMO C1 H11 sing N N 40
BMO C1 H12A sing N N 41
BMO C2 C3 sing N N 42
BMO C2 H21 sing N N 43
BMO C2 H22 sing N N 44
BMO C3 N1 sing N N 45
BMO C3 H31 sing N N 46
BMO C3 H32A sing N N 47
BMO N1 C4 sing N N 48
BMO N1 HN1 sing N N 49
BMO C4 C5 doub Y N 50
BMO C4 C16 sing Y N 51
BMO C5 C6 sing Y N 52
BMO C5 C10 sing Y N 53
BMO C6 C7 doub Y N 54
BMO C6 H6 sing N N 55
BMO C7 C8 sing Y N 56
BMO C7 H7 sing N N 57
BMO C8 C9 doub Y N 58
BMO C8 H8 sing N N 59
BMO C9 C10 sing Y N 60
BMO C9 H9 sing N N 61
BMO C10 N2 doub Y N 62
BMO N2 C11 sing Y N 63
BMO C11 C12 doub Y N 64
BMO C11 C16 sing Y N 65
BMO C12 C13 sing Y N 66
BMO C12 H12 sing N N 67
BMO C13 C14 doub Y N 68
BMO C13 H13 sing N N 69
BMO C14 C15 sing Y N 70
BMO C14 H14 sing N N 71
BMO C15 C16 doub Y N 72
BMO C15 H15 sing N N 73
DA OP3 P sing N N 74
DA OP3 HOP3 sing N N 75
DA P OP1 doub N N 76
DA P OP2 sing N N 77
DA P "O5'" sing N N 78
DA OP2 HOP2 sing N N 79
DA "O5'" "C5'" sing N N 80
DA "C5'" "C4'" sing N N 81
DA "C5'" "H5'" sing N N 82
DA "C5'" "H5''" sing N N 83
DA "C4'" "O4'" sing N N 84
DA "C4'" "C3'" sing N N 85
DA "C4'" "H4'" sing N N 86
DA "O4'" "C1'" sing N N 87
DA "C3'" "O3'" sing N N 88
DA "C3'" "C2'" sing N N 89
DA "C3'" "H3'" sing N N 90
DA "O3'" "HO3'" sing N N 91
DA "C2'" "C1'" sing N N 92
DA "C2'" "H2'" sing N N 93
DA "C2'" "H2''" sing N N 94
DA "C1'" N9 sing N N 95
DA "C1'" "H1'" sing N N 96
DA N9 C8 sing Y N 97
DA N9 C4 sing Y N 98
DA C8 N7 doub Y N 99
DA C8 H8 sing N N 100
DA N7 C5 sing Y N 101
DA C5 C6 sing Y N 102
DA C5 C4 doub Y N 103
DA C6 N6 sing N N 104
DA C6 N1 doub Y N 105
DA N6 H61 sing N N 106
DA N6 H62 sing N N 107
DA N1 C2 sing Y N 108
DA C2 N3 doub Y N 109
DA C2 H2 sing N N 110
DA N3 C4 sing Y N 111
DC OP3 P sing N N 112
DC OP3 HOP3 sing N N 113
DC P OP1 doub N N 114
DC P OP2 sing N N 115
DC P "O5'" sing N N 116
DC OP2 HOP2 sing N N 117
DC "O5'" "C5'" sing N N 118
DC "C5'" "C4'" sing N N 119
DC "C5'" "H5'" sing N N 120
DC "C5'" "H5''" sing N N 121
DC "C4'" "O4'" sing N N 122
DC "C4'" "C3'" sing N N 123
DC "C4'" "H4'" sing N N 124
DC "O4'" "C1'" sing N N 125
DC "C3'" "O3'" sing N N 126
DC "C3'" "C2'" sing N N 127
DC "C3'" "H3'" sing N N 128
DC "O3'" "HO3'" sing N N 129
DC "C2'" "C1'" sing N N 130
DC "C2'" "H2'" sing N N 131
DC "C2'" "H2''" sing N N 132
DC "C1'" N1 sing N N 133
DC "C1'" "H1'" sing N N 134
DC N1 C2 sing N N 135
DC N1 C6 sing N N 136
DC C2 O2 doub N N 137
DC C2 N3 sing N N 138
DC N3 C4 doub N N 139
DC C4 N4 sing N N 140
DC C4 C5 sing N N 141
DC N4 H41 sing N N 142
DC N4 H42 sing N N 143
DC C5 C6 doub N N 144
DC C5 H5 sing N N 145
DC C6 H6 sing N N 146
DG OP3 P sing N N 147
DG OP3 HOP3 sing N N 148
DG P OP1 doub N N 149
DG P OP2 sing N N 150
DG P "O5'" sing N N 151
DG OP2 HOP2 sing N N 152
DG "O5'" "C5'" sing N N 153
DG "C5'" "C4'" sing N N 154
DG "C5'" "H5'" sing N N 155
DG "C5'" "H5''" sing N N 156
DG "C4'" "O4'" sing N N 157
DG "C4'" "C3'" sing N N 158
DG "C4'" "H4'" sing N N 159
DG "O4'" "C1'" sing N N 160
DG "C3'" "O3'" sing N N 161
DG "C3'" "C2'" sing N N 162
DG "C3'" "H3'" sing N N 163
DG "O3'" "HO3'" sing N N 164
DG "C2'" "C1'" sing N N 165
DG "C2'" "H2'" sing N N 166
DG "C2'" "H2''" sing N N 167
DG "C1'" N9 sing N N 168
DG "C1'" "H1'" sing N N 169
DG N9 C8 sing Y N 170
DG N9 C4 sing Y N 171
DG C8 N7 doub Y N 172
DG C8 H8 sing N N 173
DG N7 C5 sing Y N 174
DG C5 C6 sing N N 175
DG C5 C4 doub Y N 176
DG C6 O6 doub N N 177
DG C6 N1 sing N N 178
DG N1 C2 sing N N 179
DG N1 H1 sing N N 180
DG C2 N2 sing N N 181
DG C2 N3 doub N N 182
DG N2 H21 sing N N 183
DG N2 H22 sing N N 184
DG N3 C4 sing N N 185
DT OP3 P sing N N 186
DT OP3 HOP3 sing N N 187
DT P OP1 doub N N 188
DT P OP2 sing N N 189
DT P "O5'" sing N N 190
DT OP2 HOP2 sing N N 191
DT "O5'" "C5'" sing N N 192
DT "C5'" "C4'" sing N N 193
DT "C5'" "H5'" sing N N 194
DT "C5'" "H5''" sing N N 195
DT "C4'" "O4'" sing N N 196
DT "C4'" "C3'" sing N N 197
DT "C4'" "H4'" sing N N 198
DT "O4'" "C1'" sing N N 199
DT "C3'" "O3'" sing N N 200
DT "C3'" "C2'" sing N N 201
DT "C3'" "H3'" sing N N 202
DT "O3'" "HO3'" sing N N 203
DT "C2'" "C1'" sing N N 204
DT "C2'" "H2'" sing N N 205
DT "C2'" "H2''" sing N N 206
DT "C1'" N1 sing N N 207
DT "C1'" "H1'" sing N N 208
DT N1 C2 sing N N 209
DT N1 C6 sing N N 210
DT C2 O2 doub N N 211
DT C2 N3 sing N N 212
DT N3 C4 sing N N 213
DT N3 H3 sing N N 214
DT C4 O4 doub N N 215
DT C4 C5 sing N N 216
DT C5 C7 sing N N 217
DT C5 C6 doub N N 218
DT C7 H71 sing N N 219
DT C7 H72 sing N N 220
DT C7 H73 sing N N 221
DT C6 H6 sing N N 222
HOH O H1 sing N N 223
HOH O H2 sing N N 224
#
_ndb_struct_conf_na.entry_id 2GJB
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 10_555 0.625 -0.539 -0.634 10.301 -3.879 -4.756 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 10_555 -0.093 -0.068 0.191 -11.221 -6.709 -4.610 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DT 3 1_555 A DA 4 10_555 -0.137 -0.079 0.268 -4.447 -3.027 1.204 3 A_DT3:DA4_A A 3 ? A 4 ? 20 1
1 A DA 4 1_555 A DT 3 10_555 0.137 -0.079 0.268 4.447 -3.027 1.204 4 A_DA4:DT3_A A 4 ? A 3 ? 20 1
1 A DC 5 1_555 A DG 2 10_555 0.093 -0.068 0.191 11.221 -6.709 -4.610 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 10_555 -0.625 -0.539 -0.634 -10.301 -3.879 -4.756 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 10_555 A DG 2 1_555 A DC 5 10_555 -0.338 0.819 7.203 -11.225 -2.216 24.244 3.044 -5.728 6.606 -4.939 25.021
26.772 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 10_555 A DT 3 1_555 A DA 4 10_555 -0.349 0.195 3.288 -1.744 1.715 32.183 0.044 0.316 3.308 3.088 3.140
32.274 2 AA_DG2DT3:DA4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DT 3 1_555 A DA 4 10_555 A DA 4 1_555 A DT 3 10_555 0.000 0.107 3.122 0.000 4.355 37.268 -0.379 0.000 3.114 6.786 0.000
37.513 3 AA_DT3DA4:DT3DA4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DA 4 1_555 A DT 3 10_555 A DC 5 1_555 A DG 2 10_555 0.349 0.195 3.288 1.744 1.715 32.183 0.044 -0.316 3.308 3.088 -3.140
32.274 4 AA_DA4DC5:DG2DT3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 10_555 A DG 6 1_555 A DC 1 10_555 0.338 0.819 7.203 11.225 -2.216 24.244 3.044 5.728 6.606 -4.939
-25.021 26.772 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_pdbx_initial_refinement_model.accession_code 1C9Z
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.details 'NDB ENTRY DD0018'
#
_atom_sites.entry_id 2GJB
_atom_sites.fract_transf_matrix[1][1] 0.038835
_atom_sites.fract_transf_matrix[1][2] 0.022421
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.044842
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.012659
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
K
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 15.551 -17.223 15.736 1.00 67.53 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 14.337 -16.994 16.495 1.00 65.05 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 13.196 -16.590 15.560 1.00 62.49 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 12.315 -15.571 16.132 1.00 59.71 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 13.647 -16.103 14.183 1.00 61.50 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 12.962 -16.926 13.242 1.00 58.84 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 13.294 -14.598 14.162 1.00 60.34 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 12.274 -14.431 15.304 1.00 56.22 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 12.384 -13.160 16.166 1.00 52.95 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 11.189 -12.569 16.641 1.00 46.16 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 10.100 -13.077 16.401 1.00 43.26 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 11.260 -11.478 17.414 1.00 49.20 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 12.429 -10.905 17.682 1.00 50.81 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 12.402 -9.800 18.434 1.00 50.56 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 13.670 -11.490 17.241 1.00 52.22 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 13.597 -12.600 16.486 1.00 50.36 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 13.106 -16.775 11.668 1.00 59.52 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 12.705 -18.031 10.988 1.00 59.27 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 14.414 -16.115 11.313 1.00 57.15 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 11.860 -15.786 11.515 1.00 60.07 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 10.537 -16.354 11.207 1.00 55.99 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 9.850 -15.535 10.137 1.00 52.56 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 9.945 -14.163 10.613 1.00 49.23 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 10.398 -15.551 8.684 1.00 53.88 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 9.443 -15.074 7.790 1.00 57.06 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 11.379 -14.398 8.774 1.00 50.04 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 10.485 -13.417 9.534 1.00 46.91 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 11.170 -12.198 9.981 1.00 41.75 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 12.514 -12.046 10.139 1.00 40.94 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 12.865 -10.858 10.520 1.00 44.50 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 11.663 -10.158 10.571 1.00 40.22 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 11.435 -8.798 10.907 1.00 38.06 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 12.283 -7.943 11.244 1.00 43.18 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 10.071 -8.492 10.892 1.00 32.84 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 9.104 -9.366 10.495 1.00 32.79 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 7.887 -8.876 10.522 1.00 34.56 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 9.283 -10.657 10.168 1.00 32.84 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 10.603 -10.977 10.245 1.00 38.27 ? 2 DG A C4 1
ATOM 39 P P . DT A 1 3 ? 8.919 -15.544 6.321 1.00 58.99 ? 3 DT A P 1
ATOM 40 O OP1 . DT A 1 3 ? 8.548 -16.992 6.288 1.00 61.00 ? 3 DT A OP1 1
ATOM 41 O OP2 . DT A 1 3 ? 9.651 -14.863 5.223 1.00 51.95 ? 3 DT A OP2 1
ATOM 42 O "O5'" . DT A 1 3 ? 7.566 -14.794 6.675 1.00 51.99 ? 3 DT A "O5'" 1
ATOM 43 C "C5'" . DT A 1 3 ? 6.473 -14.746 5.909 1.00 48.22 ? 3 DT A "C5'" 1
ATOM 44 C "C4'" . DT A 1 3 ? 6.077 -13.298 5.922 1.00 42.63 ? 3 DT A "C4'" 1
ATOM 45 O "O4'" . DT A 1 3 ? 7.032 -12.413 6.629 1.00 38.38 ? 3 DT A "O4'" 1
ATOM 46 C "C3'" . DT A 1 3 ? 6.051 -12.834 4.517 1.00 42.12 ? 3 DT A "C3'" 1
ATOM 47 O "O3'" . DT A 1 3 ? 4.785 -12.366 4.449 1.00 41.09 ? 3 DT A "O3'" 1
ATOM 48 C "C2'" . DT A 1 3 ? 7.089 -11.665 4.512 1.00 39.97 ? 3 DT A "C2'" 1
ATOM 49 C "C1'" . DT A 1 3 ? 7.150 -11.200 5.952 1.00 34.02 ? 3 DT A "C1'" 1
ATOM 50 N N1 . DT A 1 3 ? 8.524 -10.535 6.380 1.00 32.46 ? 3 DT A N1 1
ATOM 51 C C2 . DT A 1 3 ? 8.581 -9.236 6.821 1.00 27.55 ? 3 DT A C2 1
ATOM 52 O O2 . DT A 1 3 ? 7.653 -8.400 6.956 1.00 28.79 ? 3 DT A O2 1
ATOM 53 N N3 . DT A 1 3 ? 9.845 -8.852 7.111 1.00 33.16 ? 3 DT A N3 1
ATOM 54 C C4 . DT A 1 3 ? 11.022 -9.552 7.027 1.00 32.89 ? 3 DT A C4 1
ATOM 55 O O4 . DT A 1 3 ? 12.071 -9.061 7.392 1.00 35.21 ? 3 DT A O4 1
ATOM 56 C C5 . DT A 1 3 ? 10.921 -10.910 6.571 1.00 37.69 ? 3 DT A C5 1
ATOM 57 C C7 . DT A 1 3 ? 12.186 -11.578 6.093 1.00 35.97 ? 3 DT A C7 1
ATOM 58 C C6 . DT A 1 3 ? 9.676 -11.323 6.268 1.00 34.25 ? 3 DT A C6 1
ATOM 59 P P . DA A 1 4 ? 4.229 -11.875 3.073 1.00 44.99 ? 4 DA A P 1
ATOM 60 O OP1 . DA A 1 4 ? 2.755 -12.136 3.081 1.00 49.69 ? 4 DA A OP1 1
ATOM 61 O OP2 . DA A 1 4 ? 5.140 -12.625 2.151 1.00 47.23 ? 4 DA A OP2 1
ATOM 62 O "O5'" . DA A 1 4 ? 4.278 -10.292 3.050 1.00 45.33 ? 4 DA A "O5'" 1
ATOM 63 C "C5'" . DA A 1 4 ? 3.562 -9.635 4.056 1.00 42.09 ? 4 DA A "C5'" 1
ATOM 64 C "C4'" . DA A 1 4 ? 3.824 -8.161 3.889 1.00 46.55 ? 4 DA A "C4'" 1
ATOM 65 O "O4'" . DA A 1 4 ? 5.225 -7.929 4.184 1.00 42.48 ? 4 DA A "O4'" 1
ATOM 66 C "C3'" . DA A 1 4 ? 3.659 -7.787 2.438 1.00 46.77 ? 4 DA A "C3'" 1
ATOM 67 O "O3'" . DA A 1 4 ? 2.922 -6.577 2.410 1.00 48.66 ? 4 DA A "O3'" 1
ATOM 68 C "C2'" . DA A 1 4 ? 5.115 -7.622 1.912 1.00 41.93 ? 4 DA A "C2'" 1
ATOM 69 C "C1'" . DA A 1 4 ? 5.784 -7.093 3.160 1.00 38.13 ? 4 DA A "C1'" 1
ATOM 70 N N9 . DA A 1 4 ? 7.215 -7.411 3.319 1.00 34.69 ? 4 DA A N9 1
ATOM 71 C C8 . DA A 1 4 ? 7.801 -8.619 3.037 1.00 35.93 ? 4 DA A C8 1
ATOM 72 N N7 . DA A 1 4 ? 9.067 -8.730 3.366 1.00 34.03 ? 4 DA A N7 1
ATOM 73 C C5 . DA A 1 4 ? 9.318 -7.464 3.892 1.00 31.20 ? 4 DA A C5 1
ATOM 74 C C6 . DA A 1 4 ? 10.512 -6.889 4.370 1.00 29.38 ? 4 DA A C6 1
ATOM 75 N N6 . DA A 1 4 ? 11.680 -7.577 4.472 1.00 30.91 ? 4 DA A N6 1
ATOM 76 N N1 . DA A 1 4 ? 10.431 -5.634 4.845 1.00 25.81 ? 4 DA A N1 1
ATOM 77 C C2 . DA A 1 4 ? 9.240 -4.984 4.803 1.00 25.68 ? 4 DA A C2 1
ATOM 78 N N3 . DA A 1 4 ? 8.065 -5.421 4.360 1.00 30.09 ? 4 DA A N3 1
ATOM 79 C C4 . DA A 1 4 ? 8.166 -6.681 3.927 1.00 29.09 ? 4 DA A C4 1
ATOM 80 P P . DC A 1 5 ? 2.359 -6.184 0.983 1.00 48.44 ? 5 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? 1.057 -5.516 1.234 1.00 50.29 ? 5 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? 2.520 -7.303 0.098 1.00 39.98 ? 5 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? 3.301 -5.010 0.456 1.00 51.26 ? 5 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? 3.197 -3.688 0.998 1.00 49.29 ? 5 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? 4.471 -2.927 0.672 1.00 45.62 ? 5 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 5.492 -3.814 1.168 1.00 43.48 ? 5 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? 4.741 -2.688 -0.808 1.00 46.73 ? 5 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? 4.496 -1.344 -1.310 1.00 50.02 ? 5 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? 6.187 -3.132 -1.011 1.00 43.94 ? 5 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? 6.601 -3.483 0.413 1.00 42.22 ? 5 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? 7.574 -4.547 0.430 1.00 36.51 ? 5 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 8.802 -4.194 1.037 1.00 29.48 ? 5 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 8.968 -3.086 1.585 1.00 26.16 ? 5 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 9.735 -5.106 1.032 1.00 22.26 ? 5 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 9.549 -6.288 0.484 1.00 25.46 ? 5 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 10.616 -7.104 0.597 1.00 25.07 ? 5 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? 8.326 -6.674 -0.141 1.00 27.58 ? 5 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? 7.354 -5.762 -0.174 1.00 34.71 ? 5 DC A C6 1
ATOM 99 P P . DG A 1 6 ? 4.504 -1.275 -2.883 1.00 51.52 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 3.483 -0.300 -3.327 1.00 57.19 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 4.550 -2.661 -3.373 1.00 52.81 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 5.927 -0.574 -3.228 1.00 54.62 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 6.150 0.819 -2.983 1.00 44.95 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 7.258 1.310 -3.879 1.00 45.37 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 8.469 0.547 -3.601 1.00 40.27 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 7.035 0.982 -5.337 1.00 44.06 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 5.998 1.722 -5.938 1.00 46.47 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 8.437 1.181 -5.886 1.00 39.89 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 9.266 0.575 -4.756 1.00 38.52 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 9.837 -0.758 -5.025 1.00 36.33 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 9.298 -1.813 -5.718 1.00 30.86 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 10.089 -2.835 -5.773 1.00 29.18 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 11.239 -2.433 -5.146 1.00 29.77 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 12.445 -3.178 -4.923 1.00 35.80 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 12.628 -4.347 -5.317 1.00 35.62 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 13.392 -2.449 -4.192 1.00 26.25 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 13.165 -1.134 -3.777 1.00 30.64 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 14.131 -0.490 -3.085 1.00 27.33 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 12.000 -0.437 -3.936 1.00 30.60 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 11.105 -1.165 -4.655 1.00 33.20 ? 6 DG A C4 1
HETATM 121 K K . K B 2 . ? 15.563 -8.246 5.774 0.50 38.85 ? 7 K A K 1
HETATM 122 N N17 . BMO C 3 . ? 12.875 -6.438 19.748 0.50 54.31 ? 8 BMO A N17 1
HETATM 123 C C19 . BMO C 3 . ? 13.193 -5.658 18.381 1.00 55.79 ? 8 BMO A C19 1
HETATM 124 C C36 . BMO C 3 . ? 12.814 -6.440 17.157 1.00 54.31 ? 8 BMO A C36 1
HETATM 125 C C22 . BMO C 3 . ? 11.309 -6.462 17.115 1.00 51.45 ? 8 BMO A C22 1
HETATM 126 N N20 . BMO C 3 . ? 10.956 -6.556 15.708 1.00 44.28 ? 8 BMO A N20 1
HETATM 127 C C21 . BMO C 3 . ? 10.469 -7.662 15.175 1.00 40.78 ? 8 BMO A C21 1
HETATM 128 C C27 . BMO C 3 . ? 9.129 -7.753 14.996 1.00 36.70 ? 8 BMO A C27 1
HETATM 129 C C26 . BMO C 3 . ? 8.389 -6.668 15.428 1.00 37.02 ? 8 BMO A C26 1
HETATM 130 C C25 . BMO C 3 . ? 7.026 -6.739 15.283 1.00 36.22 ? 8 BMO A C25 1
HETATM 131 C C24 . BMO C 3 . ? 6.464 -7.856 14.666 1.00 38.70 ? 8 BMO A C24 1
HETATM 132 C C23 . BMO C 3 . ? 7.206 -8.944 14.199 1.00 37.00 ? 8 BMO A C23 1
HETATM 133 C C28 . BMO C 3 . ? 8.570 -8.893 14.397 1.00 38.08 ? 8 BMO A C28 1
HETATM 134 N N29 . BMO C 3 . ? 9.329 -9.914 13.988 1.00 36.83 ? 8 BMO A N29 1
HETATM 135 C C31 . BMO C 3 . ? 10.664 -9.826 14.195 1.00 36.51 ? 8 BMO A C31 1
HETATM 136 C C30 . BMO C 3 . ? 11.257 -8.698 14.753 1.00 38.72 ? 8 BMO A C30 1
HETATM 137 C C34 . BMO C 3 . ? 12.640 -8.613 14.943 1.00 41.26 ? 8 BMO A C34 1
HETATM 138 C C35 . BMO C 3 . ? 13.464 -9.688 14.534 1.00 38.87 ? 8 BMO A C35 1
HETATM 139 C C32 . BMO C 3 . ? 12.864 -10.795 13.939 1.00 37.29 ? 8 BMO A C32 1
HETATM 140 C C33 . BMO C 3 . ? 11.470 -10.847 13.763 1.00 36.07 ? 8 BMO A C33 1
HETATM 141 O O . HOH D 4 . ? 10.878 -8.764 20.783 1.00 33.82 ? 9 HOH A O 1
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