HEADER DNA 23-MAY-91 2D34
TITLE FORMALDEHYDE CROSS-LINKS DAUNORUBICIN AND DNA EFFICIENTLY: HPLC AND X-
TITLE 2 RAY DIFFRACTION STUDIES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 5'-D(*CP*GP*TP*(A35)P*CP*G)-3';
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES
KEYWDS RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA
EXPDTA X-RAY DIFFRACTION
AUTHOR A.H.-J.WANG,Y.-G.GAO,Y.-C.LIAW,Y.-K.LI
REVDAT 4 14-FEB-24 2D34 1 REMARK LINK
REVDAT 3 24-FEB-09 2D34 1 VERSN
REVDAT 2 01-APR-03 2D34 1 JRNL
REVDAT 1 15-APR-92 2D34 0
JRNL AUTH A.H.WANG,Y.G.GAO,Y.C.LIAW,Y.K.LI
JRNL TITL FORMALDEHYDE CROSS-LINKS DAUNORUBICIN AND DNA EFFICIENTLY:
JRNL TITL 2 HPLC AND X-RAY DIFFRACTION STUDIES.
JRNL REF BIOCHEMISTRY V. 30 3812 1991
JRNL REFN ISSN 0006-2960
JRNL PMID 2018756
JRNL DOI 10.1021/BI00230A002
REMARK 2
REMARK 2 RESOLUTION. 1.40 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : NUCLSQ
REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL
REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000
REMARK 3 COMPLETENESS FOR RANGE (%) : NULL
REMARK 3 NUMBER OF REFLECTIONS : 1746
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : NULL
REMARK 3 FREE R VALUE TEST SET SELECTION : NULL
REMARK 3 R VALUE (WORKING + TEST SET) : 0.178
REMARK 3 R VALUE (WORKING SET) : NULL
REMARK 3 FREE R VALUE : NULL
REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT : NULL
REMARK 3
REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA.
REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL
REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL
REMARK 3 FREE R VALUE (NO CUTOFF) : NULL
REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL
REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 0
REMARK 3 NUCLEIC ACID ATOMS : 122
REMARK 3 HETEROGEN ATOMS : 39
REMARK 3 SOLVENT ATOMS : 64
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM SIGMAA (A) : NULL
REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA
REMARK 3 SUGAR-BASE BOND DISTANCE (A) : NULL ; NULL
REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : NULL ; NULL
REMARK 3 PHOSPHATE BONDS DISTANCE (A) : NULL ; NULL
REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : NULL ; NULL
REMARK 3
REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL
REMARK 3
REMARK 3 NON-BONDED CONTACT RESTRAINTS.
REMARK 3 SINGLE TORSION CONTACT (A) : NULL ; NULL
REMARK 3 MULTIPLE TORSION CONTACT (A) : NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 SUGAR-BASE BONDS (A**2) : NULL ; NULL
REMARK 3 SUGAR-BASE ANGLES (A**2) : NULL ; NULL
REMARK 3 PHOSPHATE BONDS (A**2) : NULL ; NULL
REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : NULL ; NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2D34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000177976.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : NULL
REMARK 200 TEMPERATURE (KELVIN) : 298.00
REMARK 200 PH : 6.00
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL
REMARK 200 WAVELENGTH OR RANGE (A) : NULL
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : DIFFRACTOMETER
REMARK 200 DETECTOR MANUFACTURER : RIGAKU AFC-5R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : NULL
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1746
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500
REMARK 200 RESOLUTION RANGE LOW (A) : NULL
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : NULL
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: NULL
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 56.09
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00, VAPOR DIFFUSION
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.23550
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 14.01050
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 14.01050
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.11775
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 14.01050
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 14.01050
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.35325
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 14.01050
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 14.01050
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.11775
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 14.01050
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 14.01050
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.35325
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.23550
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 28.02100
REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 28.02100
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.23550
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 70 O HOH A 72 1.45
REMARK 500 O HOH A 67 O HOH A 68 1.45
REMARK 500 O HOH A 67 O HOH A 69 1.46
REMARK 500 O HOH A 70 O HOH A 71 1.46
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 64 O HOH A 65 4454 1.45
REMARK 500 O HOH A 64 O HOH A 66 8665 1.46
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 DC A 5 P DC A 5 O5' 0.067
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 DC A 1 O5' - C5' - C4' ANGL. DEV. = -5.5 DEGREES
REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES
REMARK 500 DC A 1 C3' - O3' - P ANGL. DEV. = 13.1 DEGREES
REMARK 500 DG A 2 C3' - C2' - C1' ANGL. DEV. = -6.3 DEGREES
REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 6.6 DEGREES
REMARK 500 DG A 2 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES
REMARK 500 DT A 3 OP1 - P - OP2 ANGL. DEV. = -9.0 DEGREES
REMARK 500 DT A 3 O5' - P - OP2 ANGL. DEV. = 9.9 DEGREES
REMARK 500 DT A 3 N1 - C2 - N3 ANGL. DEV. = 3.8 DEGREES
REMARK 500 DT A 3 C2 - N3 - C4 ANGL. DEV. = -5.6 DEGREES
REMARK 500 DT A 3 N3 - C4 - C5 ANGL. DEV. = 4.8 DEGREES
REMARK 500 DT A 3 N1 - C2 - O2 ANGL. DEV. = -4.9 DEGREES
REMARK 500 DT A 3 C3' - O3' - P ANGL. DEV. = 12.2 DEGREES
REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = 11.8 DEGREES
REMARK 500 DG A 6 O3' - P - OP2 ANGL. DEV. = -13.6 DEGREES
REMARK 500 DG A 6 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES
REMARK 500 DG A 6 C5 - C6 - O6 ANGL. DEV. = -4.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 8 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 DG A 6 N7
REMARK 620 2 DM1 A 7 O4 118.7
REMARK 620 3 HOH A 9 O 93.8 81.2
REMARK 620 4 HOH A 10 O 92.4 104.1 168.6
REMARK 620 5 HOH A 11 O 115.3 121.9 75.3 93.4
REMARK 620 N 1 2 3 4
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DM1 A 7
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 8
DBREF 2D34 A 1 6 PDB 2D34 2D34 1 6
SEQRES 1 A 6 DC DG DT A40 DC DG
MODRES 2D34 A40 A 4 DA
HET A40 A 4 23
HET DM1 A 7 38
HET MG A 8 1
HETNAM A40 N2-METHYL 2'-DEOXYADENOSINE 5'-MONOPHOSPHATE
HETNAM DM1 DAUNOMYCIN
HETNAM MG MAGNESIUM ION
HETSYN DM1 DAUNORUBICIN
FORMUL 1 A40 C11 H17 N6 O6 P
FORMUL 2 DM1 C27 H29 N O10
FORMUL 3 MG MG 2+
FORMUL 4 HOH *64(H2 O)
LINK O3' DT A 3 P A40 A 4 1555 1555 1.59
LINK O3' A40 A 4 P DC A 5 1555 1555 1.61
LINK CH2 A40 A 4 N3' DM1 A 7 1555 1555 1.53
LINK N7 DG A 6 MG MG A 8 1555 1555 2.86
LINK O4 DM1 A 7 MG MG A 8 1555 1555 2.96
LINK MG MG A 8 O HOH A 9 1555 1555 2.92
LINK MG MG A 8 O HOH A 10 1555 1555 2.78
LINK MG MG A 8 O HOH A 11 1555 1555 2.74
SITE 1 AC1 12 DC A 1 DG A 2 DT A 3 A40 A 4
SITE 2 AC1 12 DC A 5 DG A 6 MG A 8 HOH A 16
SITE 3 AC1 12 HOH A 32 HOH A 35 HOH A 37 HOH A 45
SITE 1 AC2 5 DG A 6 DM1 A 7 HOH A 9 HOH A 10
SITE 2 AC2 5 HOH A 11
CRYST1 28.021 28.021 52.471 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.035688 0.000000 0.000000 0.00000
SCALE2 0.000000 0.035688 0.000000 0.00000
SCALE3 0.000000 0.000000 0.019058 0.00000
ATOM 1 O5' DC A 1 9.536 19.900 22.662 1.00 11.97 O
ATOM 2 C5' DC A 1 9.648 21.004 23.617 1.00 11.18 C
ATOM 3 C4' DC A 1 11.119 20.971 24.047 1.00 10.97 C
ATOM 4 O4' DC A 1 11.315 19.825 24.808 1.00 10.65 O
ATOM 5 C3' DC A 1 12.085 20.878 22.861 1.00 11.06 C
ATOM 6 O3' DC A 1 13.215 21.697 23.071 1.00 11.57 O
ATOM 7 C2' DC A 1 12.394 19.374 22.783 1.00 10.57 C
ATOM 8 C1' DC A 1 12.321 18.993 24.289 1.00 9.92 C
ATOM 9 N1 DC A 1 11.951 17.578 24.388 1.00 9.18 N
ATOM 10 C2 DC A 1 12.951 16.650 24.530 1.00 8.47 C
ATOM 11 O2 DC A 1 14.134 17.020 24.577 1.00 8.40 O
ATOM 12 N3 DC A 1 12.593 15.333 24.582 1.00 8.13 N
ATOM 13 C4 DC A 1 11.309 14.952 24.551 1.00 8.27 C
ATOM 14 N4 DC A 1 11.029 13.657 24.593 1.00 8.15 N
ATOM 15 C5 DC A 1 10.258 15.916 24.436 1.00 8.51 C
ATOM 16 C6 DC A 1 10.617 17.205 24.346 1.00 8.69 C
ATOM 17 P DG A 2 13.803 22.907 22.290 1.00 15.53 P
ATOM 18 OP1 DG A 2 14.792 23.669 23.066 1.00 16.68 O
ATOM 19 OP2 DG A 2 12.688 23.636 21.665 1.00 15.62 O
ATOM 20 O5' DG A 2 14.619 22.066 21.172 1.00 13.84 O
ATOM 21 C5' DG A 2 15.804 21.285 21.450 1.00 12.86 C
ATOM 22 C4' DG A 2 16.277 20.637 20.170 1.00 12.71 C
ATOM 23 O4' DG A 2 15.512 19.449 19.960 1.00 12.11 O
ATOM 24 C3' DG A 2 16.126 21.405 18.884 1.00 12.70 C
ATOM 25 O3' DG A 2 17.166 21.016 17.950 1.00 13.70 O
ATOM 26 C2' DG A 2 14.742 20.965 18.386 1.00 12.34 C
ATOM 27 C1' DG A 2 14.946 19.466 18.643 1.00 11.50 C
ATOM 28 N9 DG A 2 13.708 18.707 18.496 1.00 10.72 N
ATOM 29 C8 DG A 2 12.396 19.063 18.454 1.00 10.30 C
ATOM 30 N7 DG A 2 11.575 18.054 18.286 1.00 10.40 N
ATOM 31 C5 DG A 2 12.422 16.939 18.181 1.00 10.00 C
ATOM 32 C6 DG A 2 12.175 15.566 17.961 1.00 9.73 C
ATOM 33 O6 DG A 2 11.065 14.997 17.824 1.00 9.67 O
ATOM 34 N1 DG A 2 13.293 14.778 17.945 1.00 9.18 N
ATOM 35 C2 DG A 2 14.546 15.269 18.066 1.00 9.16 C
ATOM 36 N2 DG A 2 15.594 14.436 18.029 1.00 8.84 N
ATOM 37 N3 DG A 2 14.831 16.555 18.260 1.00 9.59 N
ATOM 38 C4 DG A 2 13.719 17.320 18.296 1.00 10.05 C
ATOM 39 P DT A 3 17.813 21.940 16.833 1.00 19.23 P
ATOM 40 OP1 DT A 3 18.281 23.201 17.499 1.00 18.66 O
ATOM 41 OP2 DT A 3 16.602 22.215 15.962 1.00 19.05 O
ATOM 42 O5' DT A 3 18.995 21.083 16.297 1.00 14.68 O
ATOM 43 C5' DT A 3 19.867 20.399 17.237 1.00 14.16 C
ATOM 44 C4' DT A 3 20.052 19.007 16.654 1.00 13.52 C
ATOM 45 O4' DT A 3 18.866 18.289 16.817 1.00 13.22 O
ATOM 46 C3' DT A 3 20.402 18.976 15.164 1.00 13.35 C
ATOM 47 O3' DT A 3 21.691 18.452 14.959 1.00 13.82 O
ATOM 48 C2' DT A 3 19.360 18.090 14.524 1.00 13.12 C
ATOM 49 C1' DT A 3 18.645 17.454 15.678 1.00 12.50 C
ATOM 50 N1 DT A 3 17.210 17.351 15.411 1.00 11.77 N
ATOM 51 C2 DT A 3 16.751 16.048 15.285 1.00 11.24 C
ATOM 52 O2 DT A 3 17.583 15.123 15.348 1.00 11.14 O
ATOM 53 N3 DT A 3 15.426 15.849 15.033 1.00 10.94 N
ATOM 54 C4 DT A 3 14.557 16.883 14.944 1.00 10.85 C
ATOM 55 O4 DT A 3 13.358 16.608 14.734 1.00 10.64 O
ATOM 56 C5 DT A 3 15.025 18.222 15.085 1.00 11.03 C
ATOM 57 C7 DT A 3 14.092 19.388 14.986 1.00 11.06 C
ATOM 58 C6 DT A 3 16.333 18.401 15.327 1.00 11.43 C
HETATM 59 N1 A40 A 4 14.837 13.475 11.496 1.00 7.74 N
HETATM 60 C2 A40 A 4 15.857 12.598 11.481 1.00 7.54 C
HETATM 61 C4 A40 A 4 17.353 14.181 11.622 1.00 8.30 C
HETATM 62 C5 A40 A 4 16.431 15.168 11.669 1.00 8.18 C
HETATM 63 C6 A40 A 4 15.047 14.823 11.580 1.00 7.95 C
HETATM 64 C8 A40 A 4 18.348 16.134 11.769 1.00 8.54 C
HETATM 65 N2 A40 A 4 15.504 11.298 11.433 1.00 8.21 N
HETATM 66 N3 A40 A 4 17.180 12.842 11.517 1.00 8.23 N
HETATM 67 N9 A40 A 4 18.586 14.789 11.701 1.00 9.07 N
HETATM 68 N7 A40 A 4 17.045 16.417 11.753 1.00 8.32 N
HETATM 69 N6 A40 A 4 14.050 15.692 11.575 1.00 7.80 N
HETATM 70 P A40 A 4 22.453 17.998 13.642 1.00 15.99 P
HETATM 71 O1P A40 A 4 23.865 17.636 14.104 1.00 16.18 O
HETATM 72 O2P A40 A 4 22.212 18.979 12.635 1.00 16.88 O
HETATM 73 O5' A40 A 4 21.868 16.566 13.228 1.00 13.06 O
HETATM 74 C5' A40 A 4 22.083 15.414 14.020 1.00 12.10 C
HETATM 75 C4' A40 A 4 21.674 14.207 13.223 1.00 11.65 C
HETATM 76 O4' A40 A 4 20.290 13.996 13.154 1.00 11.21 O
HETATM 77 C1' A40 A 4 19.858 14.047 11.753 1.00 10.12 C
HETATM 78 C2' A40 A 4 20.957 14.694 10.998 1.00 11.06 C
HETATM 79 C3' A40 A 4 22.162 14.226 11.753 1.00 11.54 C
HETATM 80 O3' A40 A 4 22.588 12.887 11.475 1.00 12.50 O
HETATM 81 CH2 A40 A 4 16.692 10.446 11.334 1.00 8.60 C
ATOM 82 P DC A 5 23.431 12.590 10.137 1.00 19.13 P
ATOM 83 OP1 DC A 5 24.188 11.329 10.400 1.00 17.72 O
ATOM 84 OP2 DC A 5 24.134 13.775 9.744 1.00 15.88 O
ATOM 85 O5' DC A 5 22.148 12.296 9.125 1.00 12.81 O
ATOM 86 C5' DC A 5 21.526 11.001 9.125 1.00 11.74 C
ATOM 87 C4' DC A 5 20.380 11.074 8.138 1.00 11.37 C
ATOM 88 O4' DC A 5 19.374 11.912 8.668 1.00 11.01 O
ATOM 89 C3' DC A 5 20.761 11.668 6.779 1.00 11.18 C
ATOM 90 O3' DC A 5 20.225 10.869 5.740 1.00 11.97 O
ATOM 91 C2' DC A 5 20.181 13.080 6.842 1.00 10.90 C
ATOM 92 C1' DC A 5 18.911 12.772 7.666 1.00 10.45 C
ATOM 93 N1 DC A 5 18.197 13.991 8.023 1.00 9.68 N
ATOM 94 C2 DC A 5 16.829 13.837 8.212 1.00 9.07 C
ATOM 95 O2 DC A 5 16.325 12.702 8.170 1.00 9.30 O
ATOM 96 N3 DC A 5 16.050 14.935 8.359 1.00 8.89 N
ATOM 97 C4 DC A 5 16.616 16.182 8.443 1.00 8.82 C
ATOM 98 N4 DC A 5 15.798 17.227 8.652 1.00 9.14 N
ATOM 99 C5 DC A 5 18.009 16.339 8.280 1.00 9.35 C
ATOM 100 C6 DC A 5 18.752 15.238 8.065 1.00 9.39 C
ATOM 101 P DG A 6 20.993 9.684 4.979 1.00 13.89 P
ATOM 102 OP1 DG A 6 21.674 8.785 5.945 1.00 14.22 O
ATOM 103 OP2 DG A 6 21.837 10.642 4.255 1.00 15.08 O
ATOM 104 O5' DG A 6 19.783 9.026 4.187 1.00 10.54 O
ATOM 105 C5' DG A 6 18.855 8.092 4.738 1.00 9.41 C
ATOM 106 C4' DG A 6 17.936 7.585 3.678 1.00 9.09 C
ATOM 107 O4' DG A 6 17.082 8.628 3.285 1.00 8.82 O
ATOM 108 C3' DG A 6 18.617 7.089 2.398 1.00 8.81 C
ATOM 109 O3' DG A 6 17.928 5.985 1.800 1.00 8.83 O
ATOM 110 C2' DG A 6 18.642 8.339 1.548 1.00 8.39 C
ATOM 111 C1' DG A 6 17.311 8.950 1.884 1.00 7.96 C
ATOM 112 N9 DG A 6 17.379 10.407 1.805 1.00 7.38 N
ATOM 113 C8 DG A 6 18.471 11.222 1.805 1.00 6.98 C
ATOM 114 N7 DG A 6 18.174 12.489 1.742 1.00 7.53 N
ATOM 115 C5 DG A 6 16.762 12.486 1.658 1.00 6.92 C
ATOM 116 C6 DG A 6 15.832 13.554 1.569 1.00 6.60 C
ATOM 117 O6 DG A 6 16.154 14.747 1.579 1.00 7.22 O
ATOM 118 N1 DG A 6 14.523 13.175 1.548 1.00 6.76 N
ATOM 119 C2 DG A 6 14.137 11.856 1.574 1.00 6.13 C
ATOM 120 N2 DG A 6 12.814 11.654 1.537 1.00 6.38 N
ATOM 121 N3 DG A 6 14.969 10.813 1.642 1.00 6.77 N
ATOM 122 C4 DG A 6 16.266 11.225 1.690 1.00 6.93 C
TER 123 DG A 6
HETATM 124 C1 DM1 A 7 15.185 18.242 5.021 1.00 8.80 C
HETATM 125 C2 DM1 A 7 16.345 19.004 5.053 1.00 9.09 C
HETATM 126 C3 DM1 A 7 17.659 18.365 5.058 1.00 9.23 C
HETATM 127 C4 DM1 A 7 17.729 16.919 5.021 1.00 9.08 C
HETATM 128 O4 DM1 A 7 18.841 16.202 5.037 1.00 9.82 O
HETATM 129 C5 DM1 A 7 16.468 16.244 5.000 1.00 8.75 C
HETATM 130 C6 DM1 A 7 16.502 14.756 4.943 1.00 8.19 C
HETATM 131 O6 DM1 A 7 17.505 14.038 4.885 1.00 9.19 O
HETATM 132 C7 DM1 A 7 15.221 14.024 4.932 1.00 8.09 C
HETATM 133 C8 DM1 A 7 15.243 12.626 4.906 1.00 7.88 C
HETATM 134 O8 DM1 A 7 16.342 11.878 4.922 1.00 8.12 O
HETATM 135 C9 DM1 A 7 13.996 11.962 4.869 1.00 8.28 C
HETATM 136 C10 DM1 A 7 14.024 10.393 4.916 1.00 8.74 C
HETATM 137 O10 DM1 A 7 14.638 10.256 6.291 1.00 9.42 O
HETATM 138 C11 DM1 A 7 12.696 9.762 4.791 1.00 8.94 C
HETATM 139 C12 DM1 A 7 11.511 10.497 5.373 1.00 9.26 C
HETATM 140 O12 DM1 A 7 11.637 10.561 6.832 1.00 9.44 O
HETATM 141 C13 DM1 A 7 10.188 9.791 5.126 1.00 9.59 C
HETATM 142 O13 DM1 A 7 9.678 9.931 4.004 1.00 10.63 O
HETATM 143 C14 DM1 A 7 9.586 8.675 6.013 1.00 10.06 C
HETATM 144 C15 DM1 A 7 11.413 11.979 4.843 1.00 8.74 C
HETATM 145 C16 DM1 A 7 12.744 12.587 4.848 1.00 8.01 C
HETATM 146 C17 DM1 A 7 12.786 13.999 4.880 1.00 7.72 C
HETATM 147 O17 DM1 A 7 11.567 14.700 4.848 1.00 8.24 O
HETATM 148 C18 DM1 A 7 13.924 14.773 4.922 1.00 7.77 C
HETATM 149 C19 DM1 A 7 13.949 16.230 4.922 1.00 8.09 C
HETATM 150 O19 DM1 A 7 12.934 16.958 4.916 1.00 8.36 O
HETATM 151 C20 DM1 A 7 15.252 16.860 4.958 1.00 8.34 C
HETATM 152 C21 DM1 A 7 20.192 16.824 5.147 1.00 9.54 C
HETATM 153 C1' DM1 A 7 15.661 9.320 6.470 1.00 9.84 C
HETATM 154 C2' DM1 A 7 16.689 9.718 7.488 1.00 9.93 C
HETATM 155 C3' DM1 A 7 16.006 9.869 8.862 1.00 10.03 C
HETATM 156 N3' DM1 A 7 17.124 10.183 9.891 1.00 9.39 N
HETATM 157 C4' DM1 A 7 15.260 8.572 9.214 1.00 10.26 C
HETATM 158 O4' DM1 A 7 16.280 7.501 9.324 1.00 10.75 O
HETATM 159 C5' DM1 A 7 14.198 8.297 8.164 1.00 10.15 C
HETATM 160 O5' DM1 A 7 14.958 8.067 6.874 1.00 10.29 O
HETATM 161 C6' DM1 A 7 13.360 7.005 8.311 1.00 10.12 C
HETATM 162 MG MG A 8 19.707 14.742 2.608 1.00 22.40 MG
HETATM 163 O HOH A 9 17.925 16.686 1.348 1.00 25.16 O
HETATM 164 O HOH A 10 21.792 13.128 3.495 1.00 29.98 O
HETATM 165 O HOH A 11 21.234 15.933 0.672 1.00 30.58 O
HETATM 166 O HOH A 12 16.572 19.276 11.816 1.00 26.46 O
HETATM 167 O HOH A 13 10.592 17.611 11.307 1.00 23.08 O
HETATM 168 O HOH A 14 22.873 15.490 7.745 1.00 32.65 O
HETATM 169 O HOH A 15 10.247 5.307 7.372 1.00 20.18 O
HETATM 170 O HOH A 16 9.135 11.875 1.711 1.00 29.90 O
HETATM 171 O HOH A 17 11.427 8.804 1.270 1.00 38.66 O
HETATM 172 O HOH A 18 14.050 7.989 1.464 1.00 22.51 O
HETATM 173 O HOH A 19 17.026 19.629 8.915 1.00 27.26 O
HETATM 174 O HOH A 20 8.202 13.977 24.745 1.00 39.38 O
HETATM 175 O HOH A 21 26.281 16.017 10.484 1.00 40.04 O
HETATM 176 O HOH A 22 20.391 19.360 8.290 1.00 42.52 O
HETATM 177 O HOH A 23 21.753 10.357 1.212 1.00 25.38 O
HETATM 178 O HOH A 24 10.480 21.111 4.770 1.00 45.64 O
HETATM 179 O HOH A 25 22.338 17.788 8.978 1.00 46.32 O
HETATM 180 O HOH A 26 5.977 16.518 6.984 1.00 23.38 O
HETATM 181 O HOH A 27 10.659 3.657 9.397 1.00 30.56 O
HETATM 182 O HOH A 28 17.381 5.898 12.021 1.00 41.04 O
HETATM 183 O HOH A 29 14.198 26.415 10.972 1.00 52.64 O
HETATM 184 O HOH A 30 7.224 18.160 10.819 1.00 38.39 O
HETATM 185 O HOH A 31 13.638 20.119 8.196 1.00 38.74 O
HETATM 186 O HOH A 32 19.124 8.583 10.363 1.00 31.39 O
HETATM 187 O HOH A 33 20.108 7.400 8.038 1.00 25.84 O
HETATM 188 O HOH A 34 19.999 9.964 13.002 1.00 34.14 O
HETATM 189 O HOH A 35 15.361 5.114 10.646 1.00 42.26 O
HETATM 190 O HOH A 36 10.020 20.385 2.183 1.00 35.80 O
HETATM 191 O HOH A 37 17.645 6.148 6.916 1.00 45.89 O
HETATM 192 O HOH A 38 24.104 13.520 1.884 1.00 38.60 O
HETATM 193 O HOH A 39 25.841 13.848 5.126 1.00 46.10 O
HETATM 194 O HOH A 40 25.267 8.816 9.728 1.00 42.10 O
HETATM 195 O HOH A 41 16.759 21.638 13.034 1.00 38.10 O
HETATM 196 O HOH A 42 11.833 24.134 8.023 1.00 40.99 O
HETATM 197 O HOH A 43 16.742 24.347 6.973 1.00 38.90 O
HETATM 198 O HOH A 44 5.812 15.319 10.116 1.00 43.74 O
HETATM 199 O HOH A 45 10.757 18.595 5.546 1.00 46.66 O
HETATM 200 O HOH A 46 23.361 14.733 5.263 1.00 42.77 O
HETATM 201 O HOH A 47 22.797 7.619 8.842 1.00 44.99 O
HETATM 202 O HOH A 48 10.555 23.302 1.369 1.00 44.86 O
HETATM 203 O HOH A 49 3.925 18.595 14.283 1.00 46.63 O
HETATM 204 O HOH A 50 26.671 13.730 12.042 1.00 46.97 O
HETATM 205 O HOH A 51 4.063 16.076 12.572 1.00 48.06 O
HETATM 206 O HOH A 52 15.809 25.880 17.269 1.00 51.89 O
HETATM 207 O HOH A 53 10.614 19.385 8.658 1.00 48.60 O
HETATM 208 O HOH A 54 17.292 3.060 9.188 1.00 48.51 O
HETATM 209 O HOH A 55 15.005 22.361 9.251 1.00 41.53 O
HETATM 210 O HOH A 56 12.167 3.208 5.441 1.00 42.03 O
HETATM 211 O HOH A 57 9.079 6.279 3.715 1.00 46.61 O
HETATM 212 O HOH A 58 22.478 18.300 1.884 1.00 48.83 O
HETATM 213 O HOH A 59 23.952 14.232 -0.761 1.00 51.28 O
HETATM 214 O HOH A 60 12.329 5.646 0.231 1.00 55.68 O
HETATM 215 O HOH A 61 26.849 17.203 13.491 1.00 52.81 O
HETATM 216 O HOH A 62 14.450 26.127 20.180 1.00 47.40 O
HETATM 217 O HOH A 63 4.974 20.536 15.731 1.00 48.83 O
HETATM 218 O HOH A 64 6.518 6.955 6.401 1.00 45.42 O
HETATM 219 O HOH A 65 8.284 19.750 19.519 1.00 45.40 O
HETATM 220 O HOH A 66 19.727 22.053 19.677 1.00 45.40 O
HETATM 221 O HOH A 67 13.498 6.655 4.528 1.00 46.87 O
HETATM 222 O HOH A 68 12.097 6.308 4.696 1.00 46.72 O
HETATM 223 O HOH A 69 14.540 5.638 4.512 1.00 46.79 O
HETATM 224 O HOH A 70 12.368 19.909 11.633 1.00 43.24 O
HETATM 225 O HOH A 71 12.581 21.075 12.488 1.00 43.24 O
HETATM 226 O HOH A 72 13.453 18.993 11.339 1.00 43.15 O
CONECT 47 70
CONECT 59 60 63
CONECT 60 59 65 66
CONECT 61 62 66 67
CONECT 62 61 63 68
CONECT 63 59 62 69
CONECT 64 67 68
CONECT 65 60 81
CONECT 66 60 61
CONECT 67 61 64 77
CONECT 68 62 64
CONECT 69 63
CONECT 70 47 71 72 73
CONECT 71 70
CONECT 72 70
CONECT 73 70 74
CONECT 74 73 75
CONECT 75 74 76 79
CONECT 76 75 77
CONECT 77 67 76 78
CONECT 78 77 79
CONECT 79 75 78 80
CONECT 80 79 82
CONECT 81 65 156
CONECT 82 80
CONECT 114 162
CONECT 124 125 151
CONECT 125 124 126
CONECT 126 125 127
CONECT 127 126 128 129
CONECT 128 127 152 162
CONECT 129 127 130 151
CONECT 130 129 131 132
CONECT 131 130
CONECT 132 130 133 148
CONECT 133 132 134 135
CONECT 134 133
CONECT 135 133 136 145
CONECT 136 135 137 138
CONECT 137 136 153
CONECT 138 136 139
CONECT 139 138 140 141 144
CONECT 140 139
CONECT 141 139 142 143
CONECT 142 141
CONECT 143 141
CONECT 144 139 145
CONECT 145 135 144 146
CONECT 146 145 147 148
CONECT 147 146
CONECT 148 132 146 149
CONECT 149 148 150 151
CONECT 150 149
CONECT 151 124 129 149
CONECT 152 128
CONECT 153 137 154 160
CONECT 154 153 155
CONECT 155 154 156 157
CONECT 156 81 155
CONECT 157 155 158 159
CONECT 158 157
CONECT 159 157 160 161
CONECT 160 153 159
CONECT 161 159
CONECT 162 114 128 163 164
CONECT 162 165
CONECT 163 162
CONECT 164 162
CONECT 165 162
MASTER 314 0 3 0 0 0 5 6 225 1 69 1
END