data_2D34
#
_entry.id 2D34
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2D34 pdb_00002d34 10.2210/pdb2d34/pdb
RCSB DDFB24 ? ?
WWPDB D_1000177976 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1992-04-15
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' pdbx_struct_conn_angle
5 4 'Structure model' struct_conn
6 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
13 4 'Structure model' '_pdbx_struct_conn_angle.value'
14 4 'Structure model' '_struct_conn.conn_type_id'
15 4 'Structure model' '_struct_conn.id'
16 4 'Structure model' '_struct_conn.pdbx_dist_value'
17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'
24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'
30 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
31 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
32 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 2D34
_pdbx_database_status.recvd_initial_deposition_date 1991-05-23
_pdbx_database_status.deposit_site BNL
_pdbx_database_status.process_site BNL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Wang, A.H.-J.' 1
'Gao, Y.-G.' 2
'Liaw, Y.-C.' 3
'Li, Y.-K.' 4
#
_citation.id primary
_citation.title
'Formaldehyde cross-links daunorubicin and DNA efficiently: HPLC and X-ray diffraction studies.'
_citation.journal_abbrev Biochemistry
_citation.journal_volume 30
_citation.page_first 3812
_citation.page_last 3815
_citation.year 1991
_citation.journal_id_ASTM BICHAW
_citation.country US
_citation.journal_id_ISSN 0006-2960
_citation.journal_id_CSD 0033
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 2018756
_citation.pdbx_database_id_DOI 10.1021/bi00230a002
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Wang, A.H.' 1 ?
primary 'Gao, Y.G.' 2 ?
primary 'Liaw, Y.C.' 3 ?
primary 'Li, Y.K.' 4 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*CP*GP*TP*(A35)P*CP*G)-3'" 1838.258 1 ? ? ? ?
2 non-polymer syn DAUNOMYCIN 527.520 1 ? ? ? ?
3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ?
4 water nat water 18.015 64 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(A40)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGTACG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 DAUNOMYCIN DM1
3 'MAGNESIUM ION' MG
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DT n
1 4 A40 n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A40 'DNA linking' n
;N2-METHYL 2'-DEOXYADENOSINE 5'-MONOPHOSPHATE
;
? 'C11 H17 N6 O6 P' 360.263
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DM1 non-polymer . DAUNOMYCIN DAUNORUBICIN 'C27 H29 N O10' 527.520
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DT 3 3 3 DT T A . n
A 1 4 A40 4 4 4 A40 +A A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DM1 1 7 4 DM1 DM1 A .
C 3 MG 1 8 8 MG MG A .
D 4 HOH 1 9 9 HOH HOH A .
D 4 HOH 2 10 10 HOH HOH A .
D 4 HOH 3 11 11 HOH HOH A .
D 4 HOH 4 12 12 HOH HOH A .
D 4 HOH 5 13 13 HOH HOH A .
D 4 HOH 6 14 14 HOH HOH A .
D 4 HOH 7 15 15 HOH HOH A .
D 4 HOH 8 16 16 HOH HOH A .
D 4 HOH 9 17 17 HOH HOH A .
D 4 HOH 10 18 18 HOH HOH A .
D 4 HOH 11 19 19 HOH HOH A .
D 4 HOH 12 20 20 HOH HOH A .
D 4 HOH 13 21 21 HOH HOH A .
D 4 HOH 14 22 22 HOH HOH A .
D 4 HOH 15 23 23 HOH HOH A .
D 4 HOH 16 24 24 HOH HOH A .
D 4 HOH 17 25 25 HOH HOH A .
D 4 HOH 18 26 26 HOH HOH A .
D 4 HOH 19 27 27 HOH HOH A .
D 4 HOH 20 28 28 HOH HOH A .
D 4 HOH 21 29 29 HOH HOH A .
D 4 HOH 22 30 30 HOH HOH A .
D 4 HOH 23 31 31 HOH HOH A .
D 4 HOH 24 32 32 HOH HOH A .
D 4 HOH 25 33 33 HOH HOH A .
D 4 HOH 26 34 34 HOH HOH A .
D 4 HOH 27 35 35 HOH HOH A .
D 4 HOH 28 36 36 HOH HOH A .
D 4 HOH 29 37 37 HOH HOH A .
D 4 HOH 30 38 38 HOH HOH A .
D 4 HOH 31 39 39 HOH HOH A .
D 4 HOH 32 40 40 HOH HOH A .
D 4 HOH 33 41 41 HOH HOH A .
D 4 HOH 34 42 42 HOH HOH A .
D 4 HOH 35 43 43 HOH HOH A .
D 4 HOH 36 44 44 HOH HOH A .
D 4 HOH 37 45 45 HOH HOH A .
D 4 HOH 38 46 46 HOH HOH A .
D 4 HOH 39 47 47 HOH HOH A .
D 4 HOH 40 48 48 HOH HOH A .
D 4 HOH 41 49 49 HOH HOH A .
D 4 HOH 42 50 50 HOH HOH A .
D 4 HOH 43 51 51 HOH HOH A .
D 4 HOH 44 52 52 HOH HOH A .
D 4 HOH 45 53 53 HOH HOH A .
D 4 HOH 46 54 54 HOH HOH A .
D 4 HOH 47 55 55 HOH HOH A .
D 4 HOH 48 56 56 HOH HOH A .
D 4 HOH 49 57 57 HOH HOH A .
D 4 HOH 50 58 58 HOH HOH A .
D 4 HOH 51 59 59 HOH HOH A .
D 4 HOH 52 60 60 HOH HOH A .
D 4 HOH 53 61 61 HOH HOH A .
D 4 HOH 54 62 62 HOH HOH A .
D 4 HOH 55 63 63 HOH HOH A .
D 4 HOH 56 64 64 HOH HOH A .
D 4 HOH 57 65 65 HOH HOH A .
D 4 HOH 58 66 66 HOH HOH A .
D 4 HOH 59 67 67 HOH HOH A .
D 4 HOH 60 68 68 HOH HOH A .
D 4 HOH 61 69 69 HOH HOH A .
D 4 HOH 62 70 70 HOH HOH A .
D 4 HOH 63 71 71 HOH HOH A .
D 4 HOH 64 72 72 HOH HOH A .
#
_software.name NUCLSQ
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 2D34
_cell.length_a 28.021
_cell.length_b 28.021
_cell.length_c 52.471
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 2D34
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting tetragonal
_symmetry.Int_Tables_number 92
#
_exptl.entry_id 2D34
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.80
_exptl_crystal.density_percent_sol 56.09
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH 6.00
_exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 HCHO ? ? ?
1 4 1 BACL2 ? ? ?
1 5 1 'NA CACODYLATE' ? ? ?
1 6 1 SPERMINE ? ? ?
1 7 2 WATER ? ? ?
1 8 2 HCHO ? ? ?
1 9 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 298.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'RIGAKU AFC-5R'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 2D34
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F 3.000
_reflns.d_resolution_low ?
_reflns.d_resolution_high 1.500
_reflns.number_obs 1746
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 2D34
_refine.ls_number_reflns_obs 1746
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 3.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 1.400
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.178
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 41
_refine_hist.number_atoms_solvent 64
_refine_hist.number_atoms_total 225
_refine_hist.d_res_high 1.400
_refine_hist.d_res_low .
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
n_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ?
n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 2D34
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 2D34
_struct.title 'FORMALDEHYDE CROSS-LINKS DAUNORUBICIN AND DNA EFFICIENTLY: HPLC AND X-RAY DIFFRACTION STUDIES'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2D34
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 2D34
_struct_ref.pdbx_db_accession 2D34
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 2D34
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 2D34
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.0210000000 -1.0000000000
0.0000000000 0.0000000000 28.0210000000 0.0000000000 0.0000000000 -1.0000000000 26.2355000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DT 3 "O3'" ? ? ? 1_555 A A40 4 P ? ? A DT 3 A A40 4 1_555 ? ? ? ? ? ? ? 1.588 ? ?
covale2 covale one ? A A40 4 "O3'" ? ? ? 1_555 A DC 5 P ? ? A A40 4 A DC 5 1_555 ? ? ? ? ? ? ? 1.609 ? ?
covale3 covale none ? A A40 4 CH2 ? ? ? 1_555 B DM1 . "N3'" ? ? A A40 4 A DM1 7 1_555 ? ? ? ? ? ? ? 1.529 ? ?
metalc1 metalc ? ? A DG 6 N7 ? ? ? 1_555 C MG . MG ? ? A DG 6 A MG 8 1_555 ? ? ? ? ? ? ? 2.859 ? ?
metalc2 metalc ? ? B DM1 . O4 ? ? ? 1_555 C MG . MG ? ? A DM1 7 A MG 8 1_555 ? ? ? ? ? ? ? 2.963 ? ?
metalc3 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8 A HOH 9 1_555 ? ? ? ? ? ? ? 2.923 ? ?
metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8 A HOH 10 1_555 ? ? ? ? ? ? ? 2.782 ? ?
metalc5 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8 A HOH 11 1_555 ? ? ? ? ? ? ? 2.738 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A A40 4 N1 ? ? A DT 3 A A40 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A A40 4 N6 ? ? A DT 3 A A40 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A A40 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A A40 4 A DT 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A A40 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A A40 4 A DT 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O4 ? B DM1 . ? A DM1 7 ? 1_555 118.7 ?
2 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 9 ? 1_555 93.8 ?
3 O4 ? B DM1 . ? A DM1 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 9 ? 1_555 81.2 ?
4 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 10 ? 1_555 92.4 ?
5 O4 ? B DM1 . ? A DM1 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 10 ? 1_555 104.1 ?
6 O ? D HOH . ? A HOH 9 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 10 ? 1_555 168.6 ?
7 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 115.3 ?
8 O4 ? B DM1 . ? A DM1 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 121.9 ?
9 O ? D HOH . ? A HOH 9 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 75.3 ?
10 O ? D HOH . ? A HOH 10 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 93.4 ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A DM1 7 ? 12 'BINDING SITE FOR RESIDUE DM1 A 7'
AC2 Software A MG 8 ? 5 'BINDING SITE FOR RESIDUE MG A 8'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 12 DC A 1 ? DC A 1 . ? 8_665 ?
2 AC1 12 DG A 2 ? DG A 2 . ? 8_665 ?
3 AC1 12 DT A 3 ? DT A 3 . ? 8_665 ?
4 AC1 12 A40 A 4 ? A40 A 4 . ? 1_555 ?
5 AC1 12 DC A 5 ? DC A 5 . ? 1_555 ?
6 AC1 12 DG A 6 ? DG A 6 . ? 1_555 ?
7 AC1 12 MG C . ? MG A 8 . ? 1_555 ?
8 AC1 12 HOH D . ? HOH A 16 . ? 1_555 ?
9 AC1 12 HOH D . ? HOH A 32 . ? 1_555 ?
10 AC1 12 HOH D . ? HOH A 35 . ? 1_555 ?
11 AC1 12 HOH D . ? HOH A 37 . ? 1_555 ?
12 AC1 12 HOH D . ? HOH A 45 . ? 1_555 ?
13 AC2 5 DG A 6 ? DG A 6 . ? 1_555 ?
14 AC2 5 DM1 B . ? DM1 A 7 . ? 1_555 ?
15 AC2 5 HOH D . ? HOH A 9 . ? 1_555 ?
16 AC2 5 HOH D . ? HOH A 10 . ? 1_555 ?
17 AC2 5 HOH D . ? HOH A 11 . ? 1_555 ?
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 O A HOH 70 ? ? O A HOH 72 ? ? 1.45
2 1 O A HOH 67 ? ? O A HOH 68 ? ? 1.45
3 1 O A HOH 67 ? ? O A HOH 69 ? ? 1.46
4 1 O A HOH 70 ? ? O A HOH 71 ? ? 1.46
#
loop_
_pdbx_validate_symm_contact.id
_pdbx_validate_symm_contact.PDB_model_num
_pdbx_validate_symm_contact.auth_atom_id_1
_pdbx_validate_symm_contact.auth_asym_id_1
_pdbx_validate_symm_contact.auth_comp_id_1
_pdbx_validate_symm_contact.auth_seq_id_1
_pdbx_validate_symm_contact.PDB_ins_code_1
_pdbx_validate_symm_contact.label_alt_id_1
_pdbx_validate_symm_contact.site_symmetry_1
_pdbx_validate_symm_contact.auth_atom_id_2
_pdbx_validate_symm_contact.auth_asym_id_2
_pdbx_validate_symm_contact.auth_comp_id_2
_pdbx_validate_symm_contact.auth_seq_id_2
_pdbx_validate_symm_contact.PDB_ins_code_2
_pdbx_validate_symm_contact.label_alt_id_2
_pdbx_validate_symm_contact.site_symmetry_2
_pdbx_validate_symm_contact.dist
1 1 O A HOH 64 ? ? 1_555 O A HOH 65 ? ? 4_454 1.45
2 1 O A HOH 64 ? ? 1_555 O A HOH 66 ? ? 8_665 1.46
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 P
_pdbx_validate_rmsd_bond.auth_asym_id_1 A
_pdbx_validate_rmsd_bond.auth_comp_id_1 DC
_pdbx_validate_rmsd_bond.auth_seq_id_1 5
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 "O5'"
_pdbx_validate_rmsd_bond.auth_asym_id_2 A
_pdbx_validate_rmsd_bond.auth_comp_id_2 DC
_pdbx_validate_rmsd_bond.auth_seq_id_2 5
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.660
_pdbx_validate_rmsd_bond.bond_target_value 1.593
_pdbx_validate_rmsd_bond.bond_deviation 0.067
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.010
_pdbx_validate_rmsd_bond.linker_flag N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 103.90 109.40 -5.50 0.80 N
2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.47 108.30 3.17 0.30 N
3 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 132.79 119.70 13.09 1.20 Y
4 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 96.07 102.40 -6.33 0.80 N
5 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 114.91 108.30 6.61 0.30 N
6 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 114.77 111.50 3.27 0.50 N
7 1 OP1 A DT 3 ? ? P A DT 3 ? ? OP2 A DT 3 ? ? 110.57 119.60 -9.03 1.50 N
8 1 "O5'" A DT 3 ? ? P A DT 3 ? ? OP2 A DT 3 ? ? 120.58 110.70 9.88 1.20 N
9 1 N1 A DT 3 ? ? C2 A DT 3 ? ? N3 A DT 3 ? ? 118.39 114.60 3.79 0.60 N
10 1 C2 A DT 3 ? ? N3 A DT 3 ? ? C4 A DT 3 ? ? 121.64 127.20 -5.56 0.60 N
11 1 N3 A DT 3 ? ? C4 A DT 3 ? ? C5 A DT 3 ? ? 120.02 115.20 4.82 0.60 N
12 1 N1 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 118.16 123.10 -4.94 0.80 N
13 1 "C3'" A DT 3 ? ? "O3'" A DT 3 ? ? P A A40 4 ? ? 131.85 119.70 12.15 1.20 Y
14 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 120.06 108.30 11.76 0.30 N
15 1 "O3'" A DC 5 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 91.56 105.20 -13.64 2.20 Y
16 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 114.91 111.50 3.41 0.50 N
17 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 123.73 128.60 -4.87 0.60 N
#
_pdbx_struct_mod_residue.id 1
_pdbx_struct_mod_residue.label_asym_id A
_pdbx_struct_mod_residue.label_comp_id A40
_pdbx_struct_mod_residue.label_seq_id 4
_pdbx_struct_mod_residue.auth_asym_id A
_pdbx_struct_mod_residue.auth_comp_id A40
_pdbx_struct_mod_residue.auth_seq_id 4
_pdbx_struct_mod_residue.PDB_ins_code ?
_pdbx_struct_mod_residue.parent_comp_id DA
_pdbx_struct_mod_residue.details ?
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text 'INTERCALATION, COVALENT'
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A40 N1 N Y N 1
A40 C2 C Y N 2
A40 C4 C Y N 3
A40 C5 C Y N 4
A40 C6 C Y N 5
A40 C8 C Y N 6
A40 N2 N N N 7
A40 N3 N Y N 8
A40 N9 N Y N 9
A40 N7 N Y N 10
A40 N6 N N N 11
A40 P P N N 12
A40 O1P O N N 13
A40 O2P O N N 14
A40 "O5'" O N N 15
A40 "C5'" C N N 16
A40 "C4'" C N R 17
A40 "O4'" O N N 18
A40 "C1'" C N R 19
A40 "C2'" C N N 20
A40 "C3'" C N S 21
A40 "O3'" O N N 22
A40 O3P O N N 23
A40 CH2 C N N 24
A40 H8 H N N 25
A40 H2 H N N 26
A40 H6N1 H N N 27
A40 H6N2 H N N 28
A40 H2P H N N 29
A40 "H5'1" H N N 30
A40 "H5'2" H N N 31
A40 "H4'" H N N 32
A40 "H1'" H N N 33
A40 "H2'1" H N N 34
A40 "H2'2" H N N 35
A40 "H3'" H N N 36
A40 HA H N N 37
A40 H3P H N N 38
A40 HH21 H N N 39
A40 HH22 H N N 40
A40 HH23 H N N 41
DC OP3 O N N 42
DC P P N N 43
DC OP1 O N N 44
DC OP2 O N N 45
DC "O5'" O N N 46
DC "C5'" C N N 47
DC "C4'" C N R 48
DC "O4'" O N N 49
DC "C3'" C N S 50
DC "O3'" O N N 51
DC "C2'" C N N 52
DC "C1'" C N R 53
DC N1 N N N 54
DC C2 C N N 55
DC O2 O N N 56
DC N3 N N N 57
DC C4 C N N 58
DC N4 N N N 59
DC C5 C N N 60
DC C6 C N N 61
DC HOP3 H N N 62
DC HOP2 H N N 63
DC "H5'" H N N 64
DC "H5''" H N N 65
DC "H4'" H N N 66
DC "H3'" H N N 67
DC "HO3'" H N N 68
DC "H2'" H N N 69
DC "H2''" H N N 70
DC "H1'" H N N 71
DC H41 H N N 72
DC H42 H N N 73
DC H5 H N N 74
DC H6 H N N 75
DG OP3 O N N 76
DG P P N N 77
DG OP1 O N N 78
DG OP2 O N N 79
DG "O5'" O N N 80
DG "C5'" C N N 81
DG "C4'" C N R 82
DG "O4'" O N N 83
DG "C3'" C N S 84
DG "O3'" O N N 85
DG "C2'" C N N 86
DG "C1'" C N R 87
DG N9 N Y N 88
DG C8 C Y N 89
DG N7 N Y N 90
DG C5 C Y N 91
DG C6 C N N 92
DG O6 O N N 93
DG N1 N N N 94
DG C2 C N N 95
DG N2 N N N 96
DG N3 N N N 97
DG C4 C Y N 98
DG HOP3 H N N 99
DG HOP2 H N N 100
DG "H5'" H N N 101
DG "H5''" H N N 102
DG "H4'" H N N 103
DG "H3'" H N N 104
DG "HO3'" H N N 105
DG "H2'" H N N 106
DG "H2''" H N N 107
DG "H1'" H N N 108
DG H8 H N N 109
DG H1 H N N 110
DG H21 H N N 111
DG H22 H N N 112
DM1 C1 C Y N 113
DM1 C2 C Y N 114
DM1 C3 C Y N 115
DM1 C4 C Y N 116
DM1 O4 O N N 117
DM1 C5 C Y N 118
DM1 C6 C N N 119
DM1 O6 O N N 120
DM1 C7 C Y N 121
DM1 C8 C Y N 122
DM1 O8 O N N 123
DM1 C9 C Y N 124
DM1 C10 C N S 125
DM1 O10 O N N 126
DM1 C11 C N N 127
DM1 C12 C N S 128
DM1 O12 O N N 129
DM1 C13 C N N 130
DM1 O13 O N N 131
DM1 C14 C N N 132
DM1 C15 C N N 133
DM1 C16 C Y N 134
DM1 C17 C Y N 135
DM1 O17 O N N 136
DM1 C18 C Y N 137
DM1 C19 C N N 138
DM1 O19 O N N 139
DM1 C20 C Y N 140
DM1 C21 C N N 141
DM1 "C1'" C N R 142
DM1 "C2'" C N N 143
DM1 "C3'" C N S 144
DM1 "N3'" N N N 145
DM1 "C4'" C N S 146
DM1 "O4'" O N N 147
DM1 "C5'" C N S 148
DM1 "O5'" O N N 149
DM1 "C6'" C N N 150
DM1 H1 H N N 151
DM1 H2 H N N 152
DM1 H3 H N N 153
DM1 HO8 H N N 154
DM1 H10 H N N 155
DM1 H111 H N N 156
DM1 H112 H N N 157
DM1 HO12 H N N 158
DM1 H141 H N N 159
DM1 H142 H N N 160
DM1 H143 H N N 161
DM1 H151 H N N 162
DM1 H152 H N N 163
DM1 HO17 H N N 164
DM1 H211 H N N 165
DM1 H212 H N N 166
DM1 H213 H N N 167
DM1 "H1'" H N N 168
DM1 "H2'1" H N N 169
DM1 "H2'2" H N N 170
DM1 "H3'" H N N 171
DM1 "HN'1" H N N 172
DM1 "HN'2" H N N 173
DM1 "H4'" H N N 174
DM1 "HO4'" H N N 175
DM1 "H5'" H N N 176
DM1 "H6'1" H N N 177
DM1 "H6'2" H N N 178
DM1 "H6'3" H N N 179
DT OP3 O N N 180
DT P P N N 181
DT OP1 O N N 182
DT OP2 O N N 183
DT "O5'" O N N 184
DT "C5'" C N N 185
DT "C4'" C N R 186
DT "O4'" O N N 187
DT "C3'" C N S 188
DT "O3'" O N N 189
DT "C2'" C N N 190
DT "C1'" C N R 191
DT N1 N N N 192
DT C2 C N N 193
DT O2 O N N 194
DT N3 N N N 195
DT C4 C N N 196
DT O4 O N N 197
DT C5 C N N 198
DT C7 C N N 199
DT C6 C N N 200
DT HOP3 H N N 201
DT HOP2 H N N 202
DT "H5'" H N N 203
DT "H5''" H N N 204
DT "H4'" H N N 205
DT "H3'" H N N 206
DT "HO3'" H N N 207
DT "H2'" H N N 208
DT "H2''" H N N 209
DT "H1'" H N N 210
DT H3 H N N 211
DT H71 H N N 212
DT H72 H N N 213
DT H73 H N N 214
DT H6 H N N 215
HOH O O N N 216
HOH H1 H N N 217
HOH H2 H N N 218
MG MG MG N N 219
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A40 N1 C2 doub Y N 1
A40 N1 C6 sing Y N 2
A40 C2 N2 sing N N 3
A40 C2 N3 sing Y N 4
A40 C4 C5 sing Y N 5
A40 C4 N3 doub Y N 6
A40 C4 N9 sing Y N 7
A40 C5 C6 doub Y N 8
A40 C5 N7 sing Y N 9
A40 C6 N6 sing N N 10
A40 C8 N9 sing Y N 11
A40 C8 N7 doub Y N 12
A40 C8 H8 sing N N 13
A40 N2 CH2 sing N N 14
A40 N2 H2 sing N N 15
A40 N9 "C1'" sing N N 16
A40 N6 H6N1 sing N N 17
A40 N6 H6N2 sing N N 18
A40 P O1P doub N N 19
A40 P O2P sing N N 20
A40 P "O5'" sing N N 21
A40 P O3P sing N N 22
A40 O2P H2P sing N N 23
A40 "O5'" "C5'" sing N N 24
A40 "C5'" "C4'" sing N N 25
A40 "C5'" "H5'1" sing N N 26
A40 "C5'" "H5'2" sing N N 27
A40 "C4'" "O4'" sing N N 28
A40 "C4'" "C3'" sing N N 29
A40 "C4'" "H4'" sing N N 30
A40 "O4'" "C1'" sing N N 31
A40 "C1'" "C2'" sing N N 32
A40 "C1'" "H1'" sing N N 33
A40 "C2'" "C3'" sing N N 34
A40 "C2'" "H2'1" sing N N 35
A40 "C2'" "H2'2" sing N N 36
A40 "C3'" "O3'" sing N N 37
A40 "C3'" "H3'" sing N N 38
A40 "O3'" HA sing N N 39
A40 O3P H3P sing N N 40
A40 CH2 HH21 sing N N 41
A40 CH2 HH22 sing N N 42
A40 CH2 HH23 sing N N 43
DC OP3 P sing N N 44
DC OP3 HOP3 sing N N 45
DC P OP1 doub N N 46
DC P OP2 sing N N 47
DC P "O5'" sing N N 48
DC OP2 HOP2 sing N N 49
DC "O5'" "C5'" sing N N 50
DC "C5'" "C4'" sing N N 51
DC "C5'" "H5'" sing N N 52
DC "C5'" "H5''" sing N N 53
DC "C4'" "O4'" sing N N 54
DC "C4'" "C3'" sing N N 55
DC "C4'" "H4'" sing N N 56
DC "O4'" "C1'" sing N N 57
DC "C3'" "O3'" sing N N 58
DC "C3'" "C2'" sing N N 59
DC "C3'" "H3'" sing N N 60
DC "O3'" "HO3'" sing N N 61
DC "C2'" "C1'" sing N N 62
DC "C2'" "H2'" sing N N 63
DC "C2'" "H2''" sing N N 64
DC "C1'" N1 sing N N 65
DC "C1'" "H1'" sing N N 66
DC N1 C2 sing N N 67
DC N1 C6 sing N N 68
DC C2 O2 doub N N 69
DC C2 N3 sing N N 70
DC N3 C4 doub N N 71
DC C4 N4 sing N N 72
DC C4 C5 sing N N 73
DC N4 H41 sing N N 74
DC N4 H42 sing N N 75
DC C5 C6 doub N N 76
DC C5 H5 sing N N 77
DC C6 H6 sing N N 78
DG OP3 P sing N N 79
DG OP3 HOP3 sing N N 80
DG P OP1 doub N N 81
DG P OP2 sing N N 82
DG P "O5'" sing N N 83
DG OP2 HOP2 sing N N 84
DG "O5'" "C5'" sing N N 85
DG "C5'" "C4'" sing N N 86
DG "C5'" "H5'" sing N N 87
DG "C5'" "H5''" sing N N 88
DG "C4'" "O4'" sing N N 89
DG "C4'" "C3'" sing N N 90
DG "C4'" "H4'" sing N N 91
DG "O4'" "C1'" sing N N 92
DG "C3'" "O3'" sing N N 93
DG "C3'" "C2'" sing N N 94
DG "C3'" "H3'" sing N N 95
DG "O3'" "HO3'" sing N N 96
DG "C2'" "C1'" sing N N 97
DG "C2'" "H2'" sing N N 98
DG "C2'" "H2''" sing N N 99
DG "C1'" N9 sing N N 100
DG "C1'" "H1'" sing N N 101
DG N9 C8 sing Y N 102
DG N9 C4 sing Y N 103
DG C8 N7 doub Y N 104
DG C8 H8 sing N N 105
DG N7 C5 sing Y N 106
DG C5 C6 sing N N 107
DG C5 C4 doub Y N 108
DG C6 O6 doub N N 109
DG C6 N1 sing N N 110
DG N1 C2 sing N N 111
DG N1 H1 sing N N 112
DG C2 N2 sing N N 113
DG C2 N3 doub N N 114
DG N2 H21 sing N N 115
DG N2 H22 sing N N 116
DG N3 C4 sing N N 117
DM1 C1 C2 doub Y N 118
DM1 C1 C20 sing Y N 119
DM1 C1 H1 sing N N 120
DM1 C2 C3 sing Y N 121
DM1 C2 H2 sing N N 122
DM1 C3 C4 doub Y N 123
DM1 C3 H3 sing N N 124
DM1 C4 O4 sing N N 125
DM1 C4 C5 sing Y N 126
DM1 O4 C21 sing N N 127
DM1 C5 C6 sing N N 128
DM1 C5 C20 doub Y N 129
DM1 C6 O6 doub N N 130
DM1 C6 C7 sing N N 131
DM1 C7 C8 doub Y N 132
DM1 C7 C18 sing Y N 133
DM1 C8 O8 sing N N 134
DM1 C8 C9 sing Y N 135
DM1 O8 HO8 sing N N 136
DM1 C9 C10 sing N N 137
DM1 C9 C16 doub Y N 138
DM1 C10 O10 sing N N 139
DM1 C10 C11 sing N N 140
DM1 C10 H10 sing N N 141
DM1 O10 "C1'" sing N N 142
DM1 C11 C12 sing N N 143
DM1 C11 H111 sing N N 144
DM1 C11 H112 sing N N 145
DM1 C12 O12 sing N N 146
DM1 C12 C13 sing N N 147
DM1 C12 C15 sing N N 148
DM1 O12 HO12 sing N N 149
DM1 C13 O13 doub N N 150
DM1 C13 C14 sing N N 151
DM1 C14 H141 sing N N 152
DM1 C14 H142 sing N N 153
DM1 C14 H143 sing N N 154
DM1 C15 C16 sing N N 155
DM1 C15 H151 sing N N 156
DM1 C15 H152 sing N N 157
DM1 C16 C17 sing Y N 158
DM1 C17 O17 sing N N 159
DM1 C17 C18 doub Y N 160
DM1 O17 HO17 sing N N 161
DM1 C18 C19 sing N N 162
DM1 C19 O19 doub N N 163
DM1 C19 C20 sing N N 164
DM1 C21 H211 sing N N 165
DM1 C21 H212 sing N N 166
DM1 C21 H213 sing N N 167
DM1 "C1'" "C2'" sing N N 168
DM1 "C1'" "O5'" sing N N 169
DM1 "C1'" "H1'" sing N N 170
DM1 "C2'" "C3'" sing N N 171
DM1 "C2'" "H2'1" sing N N 172
DM1 "C2'" "H2'2" sing N N 173
DM1 "C3'" "N3'" sing N N 174
DM1 "C3'" "C4'" sing N N 175
DM1 "C3'" "H3'" sing N N 176
DM1 "N3'" "HN'1" sing N N 177
DM1 "N3'" "HN'2" sing N N 178
DM1 "C4'" "O4'" sing N N 179
DM1 "C4'" "C5'" sing N N 180
DM1 "C4'" "H4'" sing N N 181
DM1 "O4'" "HO4'" sing N N 182
DM1 "C5'" "O5'" sing N N 183
DM1 "C5'" "C6'" sing N N 184
DM1 "C5'" "H5'" sing N N 185
DM1 "C6'" "H6'1" sing N N 186
DM1 "C6'" "H6'2" sing N N 187
DM1 "C6'" "H6'3" sing N N 188
DT OP3 P sing N N 189
DT OP3 HOP3 sing N N 190
DT P OP1 doub N N 191
DT P OP2 sing N N 192
DT P "O5'" sing N N 193
DT OP2 HOP2 sing N N 194
DT "O5'" "C5'" sing N N 195
DT "C5'" "C4'" sing N N 196
DT "C5'" "H5'" sing N N 197
DT "C5'" "H5''" sing N N 198
DT "C4'" "O4'" sing N N 199
DT "C4'" "C3'" sing N N 200
DT "C4'" "H4'" sing N N 201
DT "O4'" "C1'" sing N N 202
DT "C3'" "O3'" sing N N 203
DT "C3'" "C2'" sing N N 204
DT "C3'" "H3'" sing N N 205
DT "O3'" "HO3'" sing N N 206
DT "C2'" "C1'" sing N N 207
DT "C2'" "H2'" sing N N 208
DT "C2'" "H2''" sing N N 209
DT "C1'" N1 sing N N 210
DT "C1'" "H1'" sing N N 211
DT N1 C2 sing N N 212
DT N1 C6 sing N N 213
DT C2 O2 doub N N 214
DT C2 N3 sing N N 215
DT N3 C4 sing N N 216
DT N3 H3 sing N N 217
DT C4 O4 doub N N 218
DT C4 C5 sing N N 219
DT C5 C7 sing N N 220
DT C5 C6 doub N N 221
DT C7 H71 sing N N 222
DT C7 H72 sing N N 223
DT C7 H73 sing N N 224
DT C6 H6 sing N N 225
HOH O H1 sing N N 226
HOH O H2 sing N N 227
#
_ndb_struct_conf_na.entry_id 2D34
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 8_665 0.344 -0.168 -0.053 8.851 -0.205 -2.951 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 8_665 0.003 -0.143 -0.292 -14.908 1.534 0.130 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DT 3 1_555 A A40 4 8_665 -0.014 -0.146 0.007 -3.688 -4.932 -2.720 3 A_DT3:A404_A A 3 ? A 4 ? 20 1
1 A A40 4 1_555 A DT 3 8_665 0.014 -0.146 0.007 3.688 -4.932 -2.720 4 A_A404:DT3_A A 4 ? A 3 ? 20 1
1 A DC 5 1_555 A DG 2 8_665 -0.003 -0.143 -0.292 14.908 1.534 0.130 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 8_665 -0.344 -0.168 -0.053 -8.851 -0.205 -2.951 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.143 1.267 7.059 0.408 -4.138 35.255 3.373 -1.748 6.883 -6.802
-0.670 35.491 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 8_665 A DT 3 1_555 A A40 4 8_665 -1.327 -0.071 3.058 -2.464 -1.907 29.020 0.255 2.123 3.155 -3.791
4.899 29.184 2 AA_DG2DT3:A404DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DT 3 1_555 A A40 4 8_665 A A40 4 1_555 A DT 3 8_665 0.000 -0.483 3.196 0.000 6.224 36.314 -1.581 0.000 3.075 9.897
0.000 36.826 3 AA_DT3A404:DT3A404_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A A40 4 1_555 A DT 3 8_665 A DC 5 1_555 A DG 2 8_665 1.327 -0.071 3.058 2.464 -1.907 29.020 0.255 -2.123 3.155 -3.791
-4.899 29.184 4 AA_A404DC5:DG2DT3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.143 1.267 7.059 -0.408 -4.138 35.255 3.373 1.748 6.883 -6.803
0.670 35.491 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_atom_sites.entry_id 2D34
_atom_sites.fract_transf_matrix[1][1] 0.035688
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.035688
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.019058
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
MG
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 9.536 19.900 22.662 1.00 11.97 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 9.648 21.004 23.617 1.00 11.18 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 11.119 20.971 24.047 1.00 10.97 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 11.315 19.825 24.808 1.00 10.65 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 12.085 20.878 22.861 1.00 11.06 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 13.215 21.697 23.071 1.00 11.57 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 12.394 19.374 22.783 1.00 10.57 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 12.321 18.993 24.289 1.00 9.92 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 11.951 17.578 24.388 1.00 9.18 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 12.951 16.650 24.530 1.00 8.47 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 14.134 17.020 24.577 1.00 8.40 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 12.593 15.333 24.582 1.00 8.13 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 11.309 14.952 24.551 1.00 8.27 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 11.029 13.657 24.593 1.00 8.15 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 10.258 15.916 24.436 1.00 8.51 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 10.617 17.205 24.346 1.00 8.69 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 13.803 22.907 22.290 1.00 15.53 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 14.792 23.669 23.066 1.00 16.68 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 12.688 23.636 21.665 1.00 15.62 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 14.619 22.066 21.172 1.00 13.84 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 15.804 21.285 21.450 1.00 12.86 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 16.277 20.637 20.170 1.00 12.71 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 15.512 19.449 19.960 1.00 12.11 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 16.126 21.405 18.884 1.00 12.70 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 17.166 21.016 17.950 1.00 13.70 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 14.742 20.965 18.386 1.00 12.34 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 14.946 19.466 18.643 1.00 11.50 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 13.708 18.707 18.496 1.00 10.72 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 12.396 19.063 18.454 1.00 10.30 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 11.575 18.054 18.286 1.00 10.40 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 12.422 16.939 18.181 1.00 10.00 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 12.175 15.566 17.961 1.00 9.73 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 11.065 14.997 17.824 1.00 9.67 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 13.293 14.778 17.945 1.00 9.18 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 14.546 15.269 18.066 1.00 9.16 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 15.594 14.436 18.029 1.00 8.84 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 14.831 16.555 18.260 1.00 9.59 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 13.719 17.320 18.296 1.00 10.05 ? 2 DG A C4 1
ATOM 39 P P . DT A 1 3 ? 17.813 21.940 16.833 1.00 19.23 ? 3 DT A P 1
ATOM 40 O OP1 . DT A 1 3 ? 18.281 23.201 17.499 1.00 18.66 ? 3 DT A OP1 1
ATOM 41 O OP2 . DT A 1 3 ? 16.602 22.215 15.962 1.00 19.05 ? 3 DT A OP2 1
ATOM 42 O "O5'" . DT A 1 3 ? 18.995 21.083 16.297 1.00 14.68 ? 3 DT A "O5'" 1
ATOM 43 C "C5'" . DT A 1 3 ? 19.867 20.399 17.237 1.00 14.16 ? 3 DT A "C5'" 1
ATOM 44 C "C4'" . DT A 1 3 ? 20.052 19.007 16.654 1.00 13.52 ? 3 DT A "C4'" 1
ATOM 45 O "O4'" . DT A 1 3 ? 18.866 18.289 16.817 1.00 13.22 ? 3 DT A "O4'" 1
ATOM 46 C "C3'" . DT A 1 3 ? 20.402 18.976 15.164 1.00 13.35 ? 3 DT A "C3'" 1
ATOM 47 O "O3'" . DT A 1 3 ? 21.691 18.452 14.959 1.00 13.82 ? 3 DT A "O3'" 1
ATOM 48 C "C2'" . DT A 1 3 ? 19.360 18.090 14.524 1.00 13.12 ? 3 DT A "C2'" 1
ATOM 49 C "C1'" . DT A 1 3 ? 18.645 17.454 15.678 1.00 12.50 ? 3 DT A "C1'" 1
ATOM 50 N N1 . DT A 1 3 ? 17.210 17.351 15.411 1.00 11.77 ? 3 DT A N1 1
ATOM 51 C C2 . DT A 1 3 ? 16.751 16.048 15.285 1.00 11.24 ? 3 DT A C2 1
ATOM 52 O O2 . DT A 1 3 ? 17.583 15.123 15.348 1.00 11.14 ? 3 DT A O2 1
ATOM 53 N N3 . DT A 1 3 ? 15.426 15.849 15.033 1.00 10.94 ? 3 DT A N3 1
ATOM 54 C C4 . DT A 1 3 ? 14.557 16.883 14.944 1.00 10.85 ? 3 DT A C4 1
ATOM 55 O O4 . DT A 1 3 ? 13.358 16.608 14.734 1.00 10.64 ? 3 DT A O4 1
ATOM 56 C C5 . DT A 1 3 ? 15.025 18.222 15.085 1.00 11.03 ? 3 DT A C5 1
ATOM 57 C C7 . DT A 1 3 ? 14.092 19.388 14.986 1.00 11.06 ? 3 DT A C7 1
ATOM 58 C C6 . DT A 1 3 ? 16.333 18.401 15.327 1.00 11.43 ? 3 DT A C6 1
HETATM 59 N N1 . A40 A 1 4 ? 14.837 13.475 11.496 1.00 7.74 ? 4 A40 A N1 1
HETATM 60 C C2 . A40 A 1 4 ? 15.857 12.598 11.481 1.00 7.54 ? 4 A40 A C2 1
HETATM 61 C C4 . A40 A 1 4 ? 17.353 14.181 11.622 1.00 8.30 ? 4 A40 A C4 1
HETATM 62 C C5 . A40 A 1 4 ? 16.431 15.168 11.669 1.00 8.18 ? 4 A40 A C5 1
HETATM 63 C C6 . A40 A 1 4 ? 15.047 14.823 11.580 1.00 7.95 ? 4 A40 A C6 1
HETATM 64 C C8 . A40 A 1 4 ? 18.348 16.134 11.769 1.00 8.54 ? 4 A40 A C8 1
HETATM 65 N N2 . A40 A 1 4 ? 15.504 11.298 11.433 1.00 8.21 ? 4 A40 A N2 1
HETATM 66 N N3 . A40 A 1 4 ? 17.180 12.842 11.517 1.00 8.23 ? 4 A40 A N3 1
HETATM 67 N N9 . A40 A 1 4 ? 18.586 14.789 11.701 1.00 9.07 ? 4 A40 A N9 1
HETATM 68 N N7 . A40 A 1 4 ? 17.045 16.417 11.753 1.00 8.32 ? 4 A40 A N7 1
HETATM 69 N N6 . A40 A 1 4 ? 14.050 15.692 11.575 1.00 7.80 ? 4 A40 A N6 1
HETATM 70 P P . A40 A 1 4 ? 22.453 17.998 13.642 1.00 15.99 ? 4 A40 A P 1
HETATM 71 O O1P . A40 A 1 4 ? 23.865 17.636 14.104 1.00 16.18 ? 4 A40 A O1P 1
HETATM 72 O O2P . A40 A 1 4 ? 22.212 18.979 12.635 1.00 16.88 ? 4 A40 A O2P 1
HETATM 73 O "O5'" . A40 A 1 4 ? 21.868 16.566 13.228 1.00 13.06 ? 4 A40 A "O5'" 1
HETATM 74 C "C5'" . A40 A 1 4 ? 22.083 15.414 14.020 1.00 12.10 ? 4 A40 A "C5'" 1
HETATM 75 C "C4'" . A40 A 1 4 ? 21.674 14.207 13.223 1.00 11.65 ? 4 A40 A "C4'" 1
HETATM 76 O "O4'" . A40 A 1 4 ? 20.290 13.996 13.154 1.00 11.21 ? 4 A40 A "O4'" 1
HETATM 77 C "C1'" . A40 A 1 4 ? 19.858 14.047 11.753 1.00 10.12 ? 4 A40 A "C1'" 1
HETATM 78 C "C2'" . A40 A 1 4 ? 20.957 14.694 10.998 1.00 11.06 ? 4 A40 A "C2'" 1
HETATM 79 C "C3'" . A40 A 1 4 ? 22.162 14.226 11.753 1.00 11.54 ? 4 A40 A "C3'" 1
HETATM 80 O "O3'" . A40 A 1 4 ? 22.588 12.887 11.475 1.00 12.50 ? 4 A40 A "O3'" 1
HETATM 81 C CH2 . A40 A 1 4 ? 16.692 10.446 11.334 1.00 8.60 ? 4 A40 A CH2 1
ATOM 82 P P . DC A 1 5 ? 23.431 12.590 10.137 1.00 19.13 ? 5 DC A P 1
ATOM 83 O OP1 . DC A 1 5 ? 24.188 11.329 10.400 1.00 17.72 ? 5 DC A OP1 1
ATOM 84 O OP2 . DC A 1 5 ? 24.134 13.775 9.744 1.00 15.88 ? 5 DC A OP2 1
ATOM 85 O "O5'" . DC A 1 5 ? 22.148 12.296 9.125 1.00 12.81 ? 5 DC A "O5'" 1
ATOM 86 C "C5'" . DC A 1 5 ? 21.526 11.001 9.125 1.00 11.74 ? 5 DC A "C5'" 1
ATOM 87 C "C4'" . DC A 1 5 ? 20.380 11.074 8.138 1.00 11.37 ? 5 DC A "C4'" 1
ATOM 88 O "O4'" . DC A 1 5 ? 19.374 11.912 8.668 1.00 11.01 ? 5 DC A "O4'" 1
ATOM 89 C "C3'" . DC A 1 5 ? 20.761 11.668 6.779 1.00 11.18 ? 5 DC A "C3'" 1
ATOM 90 O "O3'" . DC A 1 5 ? 20.225 10.869 5.740 1.00 11.97 ? 5 DC A "O3'" 1
ATOM 91 C "C2'" . DC A 1 5 ? 20.181 13.080 6.842 1.00 10.90 ? 5 DC A "C2'" 1
ATOM 92 C "C1'" . DC A 1 5 ? 18.911 12.772 7.666 1.00 10.45 ? 5 DC A "C1'" 1
ATOM 93 N N1 . DC A 1 5 ? 18.197 13.991 8.023 1.00 9.68 ? 5 DC A N1 1
ATOM 94 C C2 . DC A 1 5 ? 16.829 13.837 8.212 1.00 9.07 ? 5 DC A C2 1
ATOM 95 O O2 . DC A 1 5 ? 16.325 12.702 8.170 1.00 9.30 ? 5 DC A O2 1
ATOM 96 N N3 . DC A 1 5 ? 16.050 14.935 8.359 1.00 8.89 ? 5 DC A N3 1
ATOM 97 C C4 . DC A 1 5 ? 16.616 16.182 8.443 1.00 8.82 ? 5 DC A C4 1
ATOM 98 N N4 . DC A 1 5 ? 15.798 17.227 8.652 1.00 9.14 ? 5 DC A N4 1
ATOM 99 C C5 . DC A 1 5 ? 18.009 16.339 8.280 1.00 9.35 ? 5 DC A C5 1
ATOM 100 C C6 . DC A 1 5 ? 18.752 15.238 8.065 1.00 9.39 ? 5 DC A C6 1
ATOM 101 P P . DG A 1 6 ? 20.993 9.684 4.979 1.00 13.89 ? 6 DG A P 1
ATOM 102 O OP1 . DG A 1 6 ? 21.674 8.785 5.945 1.00 14.22 ? 6 DG A OP1 1
ATOM 103 O OP2 . DG A 1 6 ? 21.837 10.642 4.255 1.00 15.08 ? 6 DG A OP2 1
ATOM 104 O "O5'" . DG A 1 6 ? 19.783 9.026 4.187 1.00 10.54 ? 6 DG A "O5'" 1
ATOM 105 C "C5'" . DG A 1 6 ? 18.855 8.092 4.738 1.00 9.41 ? 6 DG A "C5'" 1
ATOM 106 C "C4'" . DG A 1 6 ? 17.936 7.585 3.678 1.00 9.09 ? 6 DG A "C4'" 1
ATOM 107 O "O4'" . DG A 1 6 ? 17.082 8.628 3.285 1.00 8.82 ? 6 DG A "O4'" 1
ATOM 108 C "C3'" . DG A 1 6 ? 18.617 7.089 2.398 1.00 8.81 ? 6 DG A "C3'" 1
ATOM 109 O "O3'" . DG A 1 6 ? 17.928 5.985 1.800 1.00 8.83 ? 6 DG A "O3'" 1
ATOM 110 C "C2'" . DG A 1 6 ? 18.642 8.339 1.548 1.00 8.39 ? 6 DG A "C2'" 1
ATOM 111 C "C1'" . DG A 1 6 ? 17.311 8.950 1.884 1.00 7.96 ? 6 DG A "C1'" 1
ATOM 112 N N9 . DG A 1 6 ? 17.379 10.407 1.805 1.00 7.38 ? 6 DG A N9 1
ATOM 113 C C8 . DG A 1 6 ? 18.471 11.222 1.805 1.00 6.98 ? 6 DG A C8 1
ATOM 114 N N7 . DG A 1 6 ? 18.174 12.489 1.742 1.00 7.53 ? 6 DG A N7 1
ATOM 115 C C5 . DG A 1 6 ? 16.762 12.486 1.658 1.00 6.92 ? 6 DG A C5 1
ATOM 116 C C6 . DG A 1 6 ? 15.832 13.554 1.569 1.00 6.60 ? 6 DG A C6 1
ATOM 117 O O6 . DG A 1 6 ? 16.154 14.747 1.579 1.00 7.22 ? 6 DG A O6 1
ATOM 118 N N1 . DG A 1 6 ? 14.523 13.175 1.548 1.00 6.76 ? 6 DG A N1 1
ATOM 119 C C2 . DG A 1 6 ? 14.137 11.856 1.574 1.00 6.13 ? 6 DG A C2 1
ATOM 120 N N2 . DG A 1 6 ? 12.814 11.654 1.537 1.00 6.38 ? 6 DG A N2 1
ATOM 121 N N3 . DG A 1 6 ? 14.969 10.813 1.642 1.00 6.77 ? 6 DG A N3 1
ATOM 122 C C4 . DG A 1 6 ? 16.266 11.225 1.690 1.00 6.93 ? 6 DG A C4 1
HETATM 123 C C1 . DM1 B 2 . ? 15.185 18.242 5.021 1.00 8.80 ? 7 DM1 A C1 1
HETATM 124 C C2 . DM1 B 2 . ? 16.345 19.004 5.053 1.00 9.09 ? 7 DM1 A C2 1
HETATM 125 C C3 . DM1 B 2 . ? 17.659 18.365 5.058 1.00 9.23 ? 7 DM1 A C3 1
HETATM 126 C C4 . DM1 B 2 . ? 17.729 16.919 5.021 1.00 9.08 ? 7 DM1 A C4 1
HETATM 127 O O4 . DM1 B 2 . ? 18.841 16.202 5.037 1.00 9.82 ? 7 DM1 A O4 1
HETATM 128 C C5 . DM1 B 2 . ? 16.468 16.244 5.000 1.00 8.75 ? 7 DM1 A C5 1
HETATM 129 C C6 . DM1 B 2 . ? 16.502 14.756 4.943 1.00 8.19 ? 7 DM1 A C6 1
HETATM 130 O O6 . DM1 B 2 . ? 17.505 14.038 4.885 1.00 9.19 ? 7 DM1 A O6 1
HETATM 131 C C7 . DM1 B 2 . ? 15.221 14.024 4.932 1.00 8.09 ? 7 DM1 A C7 1
HETATM 132 C C8 . DM1 B 2 . ? 15.243 12.626 4.906 1.00 7.88 ? 7 DM1 A C8 1
HETATM 133 O O8 . DM1 B 2 . ? 16.342 11.878 4.922 1.00 8.12 ? 7 DM1 A O8 1
HETATM 134 C C9 . DM1 B 2 . ? 13.996 11.962 4.869 1.00 8.28 ? 7 DM1 A C9 1
HETATM 135 C C10 . DM1 B 2 . ? 14.024 10.393 4.916 1.00 8.74 ? 7 DM1 A C10 1
HETATM 136 O O10 . DM1 B 2 . ? 14.638 10.256 6.291 1.00 9.42 ? 7 DM1 A O10 1
HETATM 137 C C11 . DM1 B 2 . ? 12.696 9.762 4.791 1.00 8.94 ? 7 DM1 A C11 1
HETATM 138 C C12 . DM1 B 2 . ? 11.511 10.497 5.373 1.00 9.26 ? 7 DM1 A C12 1
HETATM 139 O O12 . DM1 B 2 . ? 11.637 10.561 6.832 1.00 9.44 ? 7 DM1 A O12 1
HETATM 140 C C13 . DM1 B 2 . ? 10.188 9.791 5.126 1.00 9.59 ? 7 DM1 A C13 1
HETATM 141 O O13 . DM1 B 2 . ? 9.678 9.931 4.004 1.00 10.63 ? 7 DM1 A O13 1
HETATM 142 C C14 . DM1 B 2 . ? 9.586 8.675 6.013 1.00 10.06 ? 7 DM1 A C14 1
HETATM 143 C C15 . DM1 B 2 . ? 11.413 11.979 4.843 1.00 8.74 ? 7 DM1 A C15 1
HETATM 144 C C16 . DM1 B 2 . ? 12.744 12.587 4.848 1.00 8.01 ? 7 DM1 A C16 1
HETATM 145 C C17 . DM1 B 2 . ? 12.786 13.999 4.880 1.00 7.72 ? 7 DM1 A C17 1
HETATM 146 O O17 . DM1 B 2 . ? 11.567 14.700 4.848 1.00 8.24 ? 7 DM1 A O17 1
HETATM 147 C C18 . DM1 B 2 . ? 13.924 14.773 4.922 1.00 7.77 ? 7 DM1 A C18 1
HETATM 148 C C19 . DM1 B 2 . ? 13.949 16.230 4.922 1.00 8.09 ? 7 DM1 A C19 1
HETATM 149 O O19 . DM1 B 2 . ? 12.934 16.958 4.916 1.00 8.36 ? 7 DM1 A O19 1
HETATM 150 C C20 . DM1 B 2 . ? 15.252 16.860 4.958 1.00 8.34 ? 7 DM1 A C20 1
HETATM 151 C C21 . DM1 B 2 . ? 20.192 16.824 5.147 1.00 9.54 ? 7 DM1 A C21 1
HETATM 152 C "C1'" . DM1 B 2 . ? 15.661 9.320 6.470 1.00 9.84 ? 7 DM1 A "C1'" 1
HETATM 153 C "C2'" . DM1 B 2 . ? 16.689 9.718 7.488 1.00 9.93 ? 7 DM1 A "C2'" 1
HETATM 154 C "C3'" . DM1 B 2 . ? 16.006 9.869 8.862 1.00 10.03 ? 7 DM1 A "C3'" 1
HETATM 155 N "N3'" . DM1 B 2 . ? 17.124 10.183 9.891 1.00 9.39 ? 7 DM1 A "N3'" 1
HETATM 156 C "C4'" . DM1 B 2 . ? 15.260 8.572 9.214 1.00 10.26 ? 7 DM1 A "C4'" 1
HETATM 157 O "O4'" . DM1 B 2 . ? 16.280 7.501 9.324 1.00 10.75 ? 7 DM1 A "O4'" 1
HETATM 158 C "C5'" . DM1 B 2 . ? 14.198 8.297 8.164 1.00 10.15 ? 7 DM1 A "C5'" 1
HETATM 159 O "O5'" . DM1 B 2 . ? 14.958 8.067 6.874 1.00 10.29 ? 7 DM1 A "O5'" 1
HETATM 160 C "C6'" . DM1 B 2 . ? 13.360 7.005 8.311 1.00 10.12 ? 7 DM1 A "C6'" 1
HETATM 161 MG MG . MG C 3 . ? 19.707 14.742 2.608 1.00 22.40 ? 8 MG A MG 1
HETATM 162 O O . HOH D 4 . ? 17.925 16.686 1.348 1.00 25.16 ? 9 HOH A O 1
HETATM 163 O O . HOH D 4 . ? 21.792 13.128 3.495 1.00 29.98 ? 10 HOH A O 1
HETATM 164 O O . HOH D 4 . ? 21.234 15.933 0.672 1.00 30.58 ? 11 HOH A O 1
HETATM 165 O O . HOH D 4 . ? 16.572 19.276 11.816 1.00 26.46 ? 12 HOH A O 1
HETATM 166 O O . HOH D 4 . ? 10.592 17.611 11.307 1.00 23.08 ? 13 HOH A O 1
HETATM 167 O O . HOH D 4 . ? 22.873 15.490 7.745 1.00 32.65 ? 14 HOH A O 1
HETATM 168 O O . HOH D 4 . ? 10.247 5.307 7.372 1.00 20.18 ? 15 HOH A O 1
HETATM 169 O O . HOH D 4 . ? 9.135 11.875 1.711 1.00 29.90 ? 16 HOH A O 1
HETATM 170 O O . HOH D 4 . ? 11.427 8.804 1.270 1.00 38.66 ? 17 HOH A O 1
HETATM 171 O O . HOH D 4 . ? 14.050 7.989 1.464 1.00 22.51 ? 18 HOH A O 1
HETATM 172 O O . HOH D 4 . ? 17.026 19.629 8.915 1.00 27.26 ? 19 HOH A O 1
HETATM 173 O O . HOH D 4 . ? 8.202 13.977 24.745 1.00 39.38 ? 20 HOH A O 1
HETATM 174 O O . HOH D 4 . ? 26.281 16.017 10.484 1.00 40.04 ? 21 HOH A O 1
HETATM 175 O O . HOH D 4 . ? 20.391 19.360 8.290 1.00 42.52 ? 22 HOH A O 1
HETATM 176 O O . HOH D 4 . ? 21.753 10.357 1.212 1.00 25.38 ? 23 HOH A O 1
HETATM 177 O O . HOH D 4 . ? 10.480 21.111 4.770 1.00 45.64 ? 24 HOH A O 1
HETATM 178 O O . HOH D 4 . ? 22.338 17.788 8.978 1.00 46.32 ? 25 HOH A O 1
HETATM 179 O O . HOH D 4 . ? 5.977 16.518 6.984 1.00 23.38 ? 26 HOH A O 1
HETATM 180 O O . HOH D 4 . ? 10.659 3.657 9.397 1.00 30.56 ? 27 HOH A O 1
HETATM 181 O O . HOH D 4 . ? 17.381 5.898 12.021 1.00 41.04 ? 28 HOH A O 1
HETATM 182 O O . HOH D 4 . ? 14.198 26.415 10.972 1.00 52.64 ? 29 HOH A O 1
HETATM 183 O O . HOH D 4 . ? 7.224 18.160 10.819 1.00 38.39 ? 30 HOH A O 1
HETATM 184 O O . HOH D 4 . ? 13.638 20.119 8.196 1.00 38.74 ? 31 HOH A O 1
HETATM 185 O O . HOH D 4 . ? 19.124 8.583 10.363 1.00 31.39 ? 32 HOH A O 1
HETATM 186 O O . HOH D 4 . ? 20.108 7.400 8.038 1.00 25.84 ? 33 HOH A O 1
HETATM 187 O O . HOH D 4 . ? 19.999 9.964 13.002 1.00 34.14 ? 34 HOH A O 1
HETATM 188 O O . HOH D 4 . ? 15.361 5.114 10.646 1.00 42.26 ? 35 HOH A O 1
HETATM 189 O O . HOH D 4 . ? 10.020 20.385 2.183 1.00 35.80 ? 36 HOH A O 1
HETATM 190 O O . HOH D 4 . ? 17.645 6.148 6.916 1.00 45.89 ? 37 HOH A O 1
HETATM 191 O O . HOH D 4 . ? 24.104 13.520 1.884 1.00 38.60 ? 38 HOH A O 1
HETATM 192 O O . HOH D 4 . ? 25.841 13.848 5.126 1.00 46.10 ? 39 HOH A O 1
HETATM 193 O O . HOH D 4 . ? 25.267 8.816 9.728 1.00 42.10 ? 40 HOH A O 1
HETATM 194 O O . HOH D 4 . ? 16.759 21.638 13.034 1.00 38.10 ? 41 HOH A O 1
HETATM 195 O O . HOH D 4 . ? 11.833 24.134 8.023 1.00 40.99 ? 42 HOH A O 1
HETATM 196 O O . HOH D 4 . ? 16.742 24.347 6.973 1.00 38.90 ? 43 HOH A O 1
HETATM 197 O O . HOH D 4 . ? 5.812 15.319 10.116 1.00 43.74 ? 44 HOH A O 1
HETATM 198 O O . HOH D 4 . ? 10.757 18.595 5.546 1.00 46.66 ? 45 HOH A O 1
HETATM 199 O O . HOH D 4 . ? 23.361 14.733 5.263 1.00 42.77 ? 46 HOH A O 1
HETATM 200 O O . HOH D 4 . ? 22.797 7.619 8.842 1.00 44.99 ? 47 HOH A O 1
HETATM 201 O O . HOH D 4 . ? 10.555 23.302 1.369 1.00 44.86 ? 48 HOH A O 1
HETATM 202 O O . HOH D 4 . ? 3.925 18.595 14.283 1.00 46.63 ? 49 HOH A O 1
HETATM 203 O O . HOH D 4 . ? 26.671 13.730 12.042 1.00 46.97 ? 50 HOH A O 1
HETATM 204 O O . HOH D 4 . ? 4.063 16.076 12.572 1.00 48.06 ? 51 HOH A O 1
HETATM 205 O O . HOH D 4 . ? 15.809 25.880 17.269 1.00 51.89 ? 52 HOH A O 1
HETATM 206 O O . HOH D 4 . ? 10.614 19.385 8.658 1.00 48.60 ? 53 HOH A O 1
HETATM 207 O O . HOH D 4 . ? 17.292 3.060 9.188 1.00 48.51 ? 54 HOH A O 1
HETATM 208 O O . HOH D 4 . ? 15.005 22.361 9.251 1.00 41.53 ? 55 HOH A O 1
HETATM 209 O O . HOH D 4 . ? 12.167 3.208 5.441 1.00 42.03 ? 56 HOH A O 1
HETATM 210 O O . HOH D 4 . ? 9.079 6.279 3.715 1.00 46.61 ? 57 HOH A O 1
HETATM 211 O O . HOH D 4 . ? 22.478 18.300 1.884 1.00 48.83 ? 58 HOH A O 1
HETATM 212 O O . HOH D 4 . ? 23.952 14.232 -0.761 1.00 51.28 ? 59 HOH A O 1
HETATM 213 O O . HOH D 4 . ? 12.329 5.646 0.231 1.00 55.68 ? 60 HOH A O 1
HETATM 214 O O . HOH D 4 . ? 26.849 17.203 13.491 1.00 52.81 ? 61 HOH A O 1
HETATM 215 O O . HOH D 4 . ? 14.450 26.127 20.180 1.00 47.40 ? 62 HOH A O 1
HETATM 216 O O . HOH D 4 . ? 4.974 20.536 15.731 1.00 48.83 ? 63 HOH A O 1
HETATM 217 O O . HOH D 4 . ? 6.518 6.955 6.401 1.00 45.42 ? 64 HOH A O 1
HETATM 218 O O . HOH D 4 . ? 8.284 19.750 19.519 1.00 45.40 ? 65 HOH A O 1
HETATM 219 O O . HOH D 4 . ? 19.727 22.053 19.677 1.00 45.40 ? 66 HOH A O 1
HETATM 220 O O . HOH D 4 . ? 13.498 6.655 4.528 1.00 46.87 ? 67 HOH A O 1
HETATM 221 O O . HOH D 4 . ? 12.097 6.308 4.696 1.00 46.72 ? 68 HOH A O 1
HETATM 222 O O . HOH D 4 . ? 14.540 5.638 4.512 1.00 46.79 ? 69 HOH A O 1
HETATM 223 O O . HOH D 4 . ? 12.368 19.909 11.633 1.00 43.24 ? 70 HOH A O 1
HETATM 224 O O . HOH D 4 . ? 12.581 21.075 12.488 1.00 43.24 ? 71 HOH A O 1
HETATM 225 O O . HOH D 4 . ? 13.453 18.993 11.339 1.00 43.15 ? 72 HOH A O 1
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