data_2AF1
#
_entry.id 2AF1
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.376
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2AF1 pdb_00002af1 10.2210/pdb2af1/pdb
NDB BD0089 ? ?
RCSB RCSB033816 ? ?
WWPDB D_1000033816 ? ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 2AF1
_pdbx_database_status.recvd_initial_deposition_date 2005-07-25
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'De Luchi, D.' 1
'Tereshko, V.' 2
'Gouyette, C.' 3
'Subirana, J.A.' 4
#
_citation.id primary
_citation.title 'Structure of the DNA Coiled Coil Formed by d(CGATATATATAT)'
_citation.journal_abbrev Chembiochem
_citation.journal_volume 7
_citation.page_first 585
_citation.page_last 587
_citation.year 2006
_citation.journal_id_ASTM ?
_citation.country GE
_citation.journal_id_ISSN 1439-4227
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 16485316
_citation.pdbx_database_id_DOI 10.1002/cbic.200500449
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'De Luchi, D.' 1 ?
primary 'Tereshko, V.' 2 ?
primary 'Gouyette, C.' 3 ?
primary 'Subirana, J.A.' 4 ?
#
_cell.entry_id 2AF1
_cell.length_a 26.541
_cell.length_b 26.541
_cell.length_c 220.527
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 2AF1
_symmetry.space_group_name_H-M 'P 61 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 178
_symmetry.space_group_name_Hall ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description "5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*AP*TP*AP*T)-3'"
_entity.formula_weight 3660.428
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DT)'
_entity_poly.pdbx_seq_one_letter_code_can CGATATATATAT
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DA n
1 4 DT n
1 5 DA n
1 6 DT n
1 7 DA n
1 8 DT n
1 9 DA n
1 10 DT n
1 11 DA n
1 12 DT n
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 2AF1
_struct_ref.pdbx_db_accession 2AF1
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 2AF1
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 12
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 2AF1
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 12
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 12
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
#
_exptl.entry_id 2AF1
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 3.30
_exptl_crystal.density_percent_sol 75
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 277
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.5
_exptl_crystal_grow.pdbx_details
;cacodylate,MPD, sodium phosphate, potassium chloride, Trimethylamine-N-oxide, spermine , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
;
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 cacodylate ? ? ?
1 2 1 MPD ? ? ?
1 3 1 'sodium phosphate' ? ? ?
1 4 1 'potassium chloride' ? ? ?
1 5 1 Trimethylamine-N-oxide ? ? ?
1 6 1 spermine ? ? ?
1 7 1 H2O ? ? ?
1 8 2 cacodylate ? ? ?
1 9 2 MPD ? ? ?
1 10 2 'sodium phosphate' ? ? ?
1 11 2 'potassium chloride' ? ? ?
1 12 2 H2O ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 110
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type MARRESEARCH
_diffrn_detector.pdbx_collection_date 2004-11-24
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.972
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE BM16'
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline BM16
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.972
#
_reflns.entry_id 2AF1
_reflns.observed_criterion_sigma_F 1
_reflns.observed_criterion_sigma_I 1
_reflns.d_resolution_high 3.10
_reflns.d_resolution_low 23.0
_reflns.number_all 1101
_reflns.number_obs 1099
_reflns.percent_possible_obs 99.2
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 3.10
_reflns_shell.d_res_low ?
_reflns_shell.percent_possible_all 93
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 2AF1
_refine.ls_number_reflns_obs 983
_refine.ls_number_reflns_all 985
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 23.00
_refine.ls_d_res_high 3.10
_refine.ls_percent_reflns_obs 99.82
_refine.ls_R_factor_obs 0.33318
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.3316
_refine.ls_R_factor_R_free 0.34585
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 10.5
_refine.ls_number_reflns_R_free 115
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.935
_refine.correlation_coeff_Fo_to_Fc_free 0.946
_refine.B_iso_mean 50.000
_refine.aniso_B[1][1] -0.32
_refine.aniso_B[2][2] -0.32
_refine.aniso_B[3][3] 0.48
_refine.aniso_B[1][2] -0.16
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model 'pdb entry 1GQU'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 5.020
_refine.pdbx_overall_ESU_R_Free 0.554
_refine.overall_SU_ML 0.750
_refine.overall_SU_B 45.734
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag UNVERIFIED
_refine.pdbx_diffrn_id 1
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 243
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 243
_refine_hist.d_res_high 3.10
_refine_hist.d_res_low 23.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.008 0.021 ? 272 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.980 3.000 ? 418 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.087 0.200 ? 47 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.005 0.020 ? 126 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.248 0.200 ? 119 'X-RAY DIFFRACTION' ?
r_nbtor_refined 0.314 0.200 ? 152 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.298 0.200 ? 1 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.236 0.200 ? 27 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.137 0.200 ? 9 'X-RAY DIFFRACTION' ?
r_scbond_it 0.000 3.000 ? 389 'X-RAY DIFFRACTION' ?
r_scangle_it 0.000 4.500 ? 418 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 3.10
_refine_ls_shell.d_res_low 3.181
_refine_ls_shell.number_reflns_R_work 62
_refine_ls_shell.R_factor_R_work 0.541
_refine_ls_shell.percent_reflns_obs 100.00
_refine_ls_shell.R_factor_R_free 0.612
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 9
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_struct.entry_id 2AF1
_struct.title 'Structure of the DNA coiled-coil formed by d(CGATATATATAT)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2AF1
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'HOOGSTEEN H-BONDS, COILED-COIL, DNA'
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 12 O4 ? ? A DA 3 A DT 12 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog2 hydrog ? ? A DA 3 N7 ? ? ? 1_555 A DT 12 N3 ? ? A DA 3 A DT 12 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog3 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 11 N7 ? ? A DT 4 A DA 11 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog4 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 11 N6 ? ? A DT 4 A DA 11 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog5 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 10 O4 ? ? A DA 5 A DT 10 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog6 hydrog ? ? A DA 5 N7 ? ? ? 1_555 A DT 10 N3 ? ? A DA 5 A DT 10 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog7 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA 9 N7 ? ? A DT 6 A DA 9 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog8 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA 9 N6 ? ? A DT 6 A DA 9 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog9 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 7 A DT 8 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog10 hydrog ? ? A DA 7 N7 ? ? ? 1_555 A DT 8 N3 ? ? A DA 7 A DT 8 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog11 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 7 N7 ? ? A DT 8 A DA 7 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog12 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 7 N6 ? ? A DT 8 A DA 7 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog13 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 6 O4 ? ? A DA 9 A DT 6 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog14 hydrog ? ? A DA 9 N7 ? ? ? 1_555 A DT 6 N3 ? ? A DA 9 A DT 6 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog15 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DA 5 N7 ? ? A DT 10 A DA 5 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog16 hydrog ? ? A DT 10 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 10 A DA 5 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog17 hydrog ? ? A DA 11 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 11 A DT 4 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog18 hydrog ? ? A DA 11 N7 ? ? ? 1_555 A DT 4 N3 ? ? A DA 11 A DT 4 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog19 hydrog ? ? A DT 12 N3 ? ? ? 1_555 A DA 3 N7 ? ? A DT 12 A DA 3 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog20 hydrog ? ? A DT 12 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 12 A DA 3 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
_database_PDB_matrix.entry_id 2AF1
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 2AF1
_atom_sites.fract_transf_matrix[1][1] 0.037678
_atom_sites.fract_transf_matrix[1][2] 0.021753
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.043506
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.004535
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 1.504 -15.378 33.631 1.00 50.00 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 1.011 -16.705 33.450 1.00 50.00 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? -0.441 -16.857 33.903 1.00 50.00 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? -0.827 -15.805 34.837 1.00 50.00 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? -1.493 -16.833 32.777 1.00 50.00 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? -2.501 -17.860 32.966 1.00 50.00 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? -2.089 -15.445 32.954 1.00 50.00 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? -2.156 -15.495 34.472 1.00 50.00 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? -2.704 -14.296 35.178 1.00 50.00 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? -3.734 -14.507 36.101 1.00 50.00 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? -4.143 -15.660 36.276 1.00 50.00 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? -4.265 -13.450 36.762 1.00 50.00 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? -3.791 -12.229 36.530 1.00 50.00 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? -4.345 -11.215 37.200 1.00 50.00 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? -2.748 -11.986 35.586 1.00 50.00 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? -2.233 -13.037 34.939 1.00 50.00 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? -3.479 -18.392 31.789 1.00 50.00 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? -2.672 -19.156 30.801 1.00 50.00 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? -4.322 -17.271 31.304 1.00 50.00 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? -4.390 -19.411 32.640 1.00 50.00 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? -5.658 -19.862 32.177 1.00 50.00 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? -6.813 -18.980 32.632 1.00 50.00 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? -6.355 -17.811 33.360 1.00 50.00 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? -7.631 -18.425 31.478 1.00 50.00 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? -9.018 -18.676 31.680 1.00 50.00 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? -7.328 -16.932 31.503 1.00 50.00 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? -7.178 -16.722 33.000 1.00 50.00 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? -6.579 -15.444 33.417 1.00 50.00 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? -5.279 -15.038 33.230 1.00 50.00 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? -5.019 -13.846 33.704 1.00 50.00 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? -6.216 -13.425 34.261 1.00 50.00 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? -6.541 -12.210 34.917 1.00 50.00 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? -5.806 -11.246 35.145 1.00 50.00 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? -7.870 -12.163 35.326 1.00 50.00 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? -8.771 -13.176 35.116 1.00 50.00 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? -10.005 -12.959 35.579 1.00 50.00 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? -8.489 -14.321 34.497 1.00 50.00 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? -7.191 -14.391 34.090 1.00 50.00 ? 2 DG A C4 1
ATOM 39 P P . DA A 1 3 ? -9.929 -18.903 30.380 1.00 50.00 ? 3 DA A P 1
ATOM 40 O OP1 . DA A 1 3 ? -10.504 -20.260 30.531 1.00 50.00 ? 3 DA A OP1 1
ATOM 41 O OP2 . DA A 1 3 ? -9.113 -18.565 29.182 1.00 50.00 ? 3 DA A OP2 1
ATOM 42 O "O5'" . DA A 1 3 ? -11.118 -17.828 30.493 1.00 50.00 ? 3 DA A "O5'" 1
ATOM 43 C "C5'" . DA A 1 3 ? -11.652 -17.386 31.756 1.00 50.00 ? 3 DA A "C5'" 1
ATOM 44 C "C4'" . DA A 1 3 ? -12.345 -16.023 31.650 1.00 50.00 ? 3 DA A "C4'" 1
ATOM 45 O "O4'" . DA A 1 3 ? -11.492 -14.947 32.150 1.00 50.00 ? 3 DA A "O4'" 1
ATOM 46 C "C3'" . DA A 1 3 ? -12.769 -15.573 30.250 1.00 50.00 ? 3 DA A "C3'" 1
ATOM 47 O "O3'" . DA A 1 3 ? -14.084 -15.023 30.319 1.00 50.00 ? 3 DA A "O3'" 1
ATOM 48 C "C2'" . DA A 1 3 ? -11.718 -14.520 29.892 1.00 50.00 ? 3 DA A "C2'" 1
ATOM 49 C "C1'" . DA A 1 3 ? -11.586 -13.852 31.255 1.00 50.00 ? 3 DA A "C1'" 1
ATOM 50 N N9 . DA A 1 3 ? -10.501 -12.885 31.497 1.00 50.00 ? 3 DA A N9 1
ATOM 51 C C8 . DA A 1 3 ? -10.720 -11.615 31.956 1.00 50.00 ? 3 DA A C8 1
ATOM 52 N N7 . DA A 1 3 ? -9.635 -10.893 32.131 1.00 50.00 ? 3 DA A N7 1
ATOM 53 C C5 . DA A 1 3 ? -8.608 -11.744 31.776 1.00 50.00 ? 3 DA A C5 1
ATOM 54 C C6 . DA A 1 3 ? -7.206 -11.554 31.749 1.00 50.00 ? 3 DA A C6 1
ATOM 55 N N6 . DA A 1 3 ? -6.602 -10.417 32.104 1.00 50.00 ? 3 DA A N6 1
ATOM 56 N N1 . DA A 1 3 ? -6.447 -12.590 31.347 1.00 50.00 ? 3 DA A N1 1
ATOM 57 C C2 . DA A 1 3 ? -7.074 -13.720 30.988 1.00 50.00 ? 3 DA A C2 1
ATOM 58 N N3 . DA A 1 3 ? -8.381 -14.024 30.982 1.00 50.00 ? 3 DA A N3 1
ATOM 59 C C4 . DA A 1 3 ? -9.120 -12.982 31.387 1.00 50.00 ? 3 DA A C4 1
ATOM 60 P P . DT A 1 4 ? -15.086 -15.147 29.076 1.00 50.00 ? 4 DT A P 1
ATOM 61 O OP1 . DT A 1 4 ? -16.356 -15.752 29.549 1.00 50.00 ? 4 DT A OP1 1
ATOM 62 O OP2 . DT A 1 4 ? -14.350 -15.770 27.951 1.00 50.00 ? 4 DT A OP2 1
ATOM 63 O "O5'" . DT A 1 4 ? -15.341 -13.616 28.709 1.00 50.00 ? 4 DT A "O5'" 1
ATOM 64 C "C5'" . DT A 1 4 ? -16.210 -12.868 29.542 1.00 50.00 ? 4 DT A "C5'" 1
ATOM 65 C "C4'" . DT A 1 4 ? -15.730 -11.440 29.664 1.00 50.00 ? 4 DT A "C4'" 1
ATOM 66 O "O4'" . DT A 1 4 ? -14.293 -11.447 29.858 1.00 50.00 ? 4 DT A "O4'" 1
ATOM 67 C "C3'" . DT A 1 4 ? -16.015 -10.588 28.426 1.00 50.00 ? 4 DT A "C3'" 1
ATOM 68 O "O3'" . DT A 1 4 ? -17.038 -9.592 28.690 1.00 50.00 ? 4 DT A "O3'" 1
ATOM 69 C "C2'" . DT A 1 4 ? -14.648 -9.991 28.086 1.00 50.00 ? 4 DT A "C2'" 1
ATOM 70 C "C1'" . DT A 1 4 ? -13.836 -10.208 29.364 1.00 50.00 ? 4 DT A "C1'" 1
ATOM 71 N N1 . DT A 1 4 ? -12.313 -10.178 29.234 1.00 50.00 ? 4 DT A N1 1
ATOM 72 C C2 . DT A 1 4 ? -11.635 -9.010 29.572 1.00 50.00 ? 4 DT A C2 1
ATOM 73 O O2 . DT A 1 4 ? -12.185 -7.991 29.961 1.00 50.00 ? 4 DT A O2 1
ATOM 74 N N3 . DT A 1 4 ? -10.265 -9.063 29.437 1.00 50.00 ? 4 DT A N3 1
ATOM 75 C C4 . DT A 1 4 ? -9.516 -10.141 29.009 1.00 50.00 ? 4 DT A C4 1
ATOM 76 O O4 . DT A 1 4 ? -8.297 -10.084 28.922 1.00 50.00 ? 4 DT A O4 1
ATOM 77 C C5 . DT A 1 4 ? -10.268 -11.326 28.674 1.00 50.00 ? 4 DT A C5 1
ATOM 78 C C7 . DT A 1 4 ? -9.540 -12.546 28.196 1.00 50.00 ? 4 DT A C7 1
ATOM 79 C C6 . DT A 1 4 ? -11.609 -11.291 28.795 1.00 50.00 ? 4 DT A C6 1
ATOM 80 P P . DA A 1 5 ? -17.780 -8.753 27.518 1.00 50.00 ? 5 DA A P 1
ATOM 81 O OP1 . DA A 1 5 ? -19.122 -8.349 28.004 1.00 50.00 ? 5 DA A OP1 1
ATOM 82 O OP2 . DA A 1 5 ? -17.677 -9.513 26.241 1.00 50.00 ? 5 DA A OP2 1
ATOM 83 O "O5'" . DA A 1 5 ? -16.879 -7.422 27.435 1.00 50.00 ? 5 DA A "O5'" 1
ATOM 84 C "C5'" . DA A 1 5 ? -16.630 -6.651 28.618 1.00 50.00 ? 5 DA A "C5'" 1
ATOM 85 C "C4'" . DA A 1 5 ? -15.690 -5.486 28.359 1.00 50.00 ? 5 DA A "C4'" 1
ATOM 86 O "O4'" . DA A 1 5 ? -14.302 -5.916 28.389 1.00 50.00 ? 5 DA A "O4'" 1
ATOM 87 C "C3'" . DA A 1 5 ? -15.881 -4.780 27.021 1.00 50.00 ? 5 DA A "C3'" 1
ATOM 88 O "O3'" . DA A 1 5 ? -16.047 -3.388 27.260 1.00 50.00 ? 5 DA A "O3'" 1
ATOM 89 C "C2'" . DA A 1 5 ? -14.594 -5.095 26.262 1.00 50.00 ? 5 DA A "C2'" 1
ATOM 90 C "C1'" . DA A 1 5 ? -13.599 -5.172 27.412 1.00 50.00 ? 5 DA A "C1'" 1
ATOM 91 N N9 . DA A 1 5 ? -12.270 -5.766 27.156 1.00 50.00 ? 5 DA A N9 1
ATOM 92 C C8 . DA A 1 5 ? -11.078 -5.105 27.294 1.00 50.00 ? 5 DA A C8 1
ATOM 93 N N7 . DA A 1 5 ? -10.009 -5.819 27.035 1.00 50.00 ? 5 DA A N7 1
ATOM 94 C C5 . DA A 1 5 ? -10.524 -7.052 26.703 1.00 50.00 ? 5 DA A C5 1
ATOM 95 C C6 . DA A 1 5 ? -9.890 -8.255 26.322 1.00 50.00 ? 5 DA A C6 1
ATOM 96 N N6 . DA A 1 5 ? -8.563 -8.385 26.222 1.00 50.00 ? 5 DA A N6 1
ATOM 97 N N1 . DA A 1 5 ? -10.680 -9.320 26.055 1.00 50.00 ? 5 DA A N1 1
ATOM 98 C C2 . DA A 1 5 ? -12.010 -9.169 26.159 1.00 50.00 ? 5 DA A C2 1
ATOM 99 N N3 . DA A 1 5 ? -12.717 -8.087 26.508 1.00 50.00 ? 5 DA A N3 1
ATOM 100 C C4 . DA A 1 5 ? -11.913 -7.045 26.772 1.00 50.00 ? 5 DA A C4 1
ATOM 101 P P . DT A 1 6 ? -16.716 -2.431 26.155 1.00 50.00 ? 6 DT A P 1
ATOM 102 O OP1 . DT A 1 6 ? -17.819 -1.651 26.762 1.00 50.00 ? 6 DT A OP1 1
ATOM 103 O OP2 . DT A 1 6 ? -16.991 -3.230 24.939 1.00 50.00 ? 6 DT A OP2 1
ATOM 104 O "O5'" . DT A 1 6 ? -15.518 -1.426 25.873 1.00 50.00 ? 6 DT A "O5'" 1
ATOM 105 C "C5'" . DT A 1 6 ? -14.530 -1.232 26.871 1.00 50.00 ? 6 DT A "C5'" 1
ATOM 106 C "C4'" . DT A 1 6 ? -13.252 -0.810 26.187 1.00 50.00 ? 6 DT A "C4'" 1
ATOM 107 O "O4'" . DT A 1 6 ? -12.434 -1.984 25.967 1.00 50.00 ? 6 DT A "O4'" 1
ATOM 108 C "C3'" . DT A 1 6 ? -13.463 -0.181 24.813 1.00 50.00 ? 6 DT A "C3'" 1
ATOM 109 O "O3'" . DT A 1 6 ? -12.755 1.053 24.751 1.00 50.00 ? 6 DT A "O3'" 1
ATOM 110 C "C2'" . DT A 1 6 ? -12.948 -1.235 23.825 1.00 50.00 ? 6 DT A "C2'" 1
ATOM 111 C "C1'" . DT A 1 6 ? -11.877 -1.916 24.668 1.00 50.00 ? 6 DT A "C1'" 1
ATOM 112 N N1 . DT A 1 6 ? -11.429 -3.299 24.247 1.00 50.00 ? 6 DT A N1 1
ATOM 113 C C2 . DT A 1 6 ? -10.073 -3.528 24.132 1.00 50.00 ? 6 DT A C2 1
ATOM 114 O O2 . DT A 1 6 ? -9.235 -2.670 24.343 1.00 50.00 ? 6 DT A O2 1
ATOM 115 N N3 . DT A 1 6 ? -9.725 -4.803 23.753 1.00 50.00 ? 6 DT A N3 1
ATOM 116 C C4 . DT A 1 6 ? -10.582 -5.855 23.489 1.00 50.00 ? 6 DT A C4 1
ATOM 117 O O4 . DT A 1 6 ? -10.168 -6.961 23.161 1.00 50.00 ? 6 DT A O4 1
ATOM 118 C C5 . DT A 1 6 ? -11.987 -5.556 23.629 1.00 50.00 ? 6 DT A C5 1
ATOM 119 C C7 . DT A 1 6 ? -13.011 -6.617 23.366 1.00 50.00 ? 6 DT A C7 1
ATOM 120 C C6 . DT A 1 6 ? -12.339 -4.312 23.996 1.00 50.00 ? 6 DT A C6 1
ATOM 121 P P . DA A 1 7 ? -12.985 2.056 23.525 1.00 50.00 ? 7 DA A P 1
ATOM 122 O OP1 . DA A 1 7 ? -13.010 3.451 24.024 1.00 50.00 ? 7 DA A OP1 1
ATOM 123 O OP2 . DA A 1 7 ? -14.130 1.555 22.721 1.00 50.00 ? 7 DA A OP2 1
ATOM 124 O "O5'" . DA A 1 7 ? -11.602 1.845 22.753 1.00 50.00 ? 7 DA A "O5'" 1
ATOM 125 C "C5'" . DA A 1 7 ? -10.392 2.160 23.422 1.00 50.00 ? 7 DA A "C5'" 1
ATOM 126 C "C4'" . DA A 1 7 ? -9.205 1.827 22.546 1.00 50.00 ? 7 DA A "C4'" 1
ATOM 127 O "O4'" . DA A 1 7 ? -9.155 0.409 22.274 1.00 50.00 ? 7 DA A "O4'" 1
ATOM 128 C "C3'" . DA A 1 7 ? -9.196 2.471 21.165 1.00 50.00 ? 7 DA A "C3'" 1
ATOM 129 O "O3'" . DA A 1 7 ? -7.949 3.144 21.054 1.00 50.00 ? 7 DA A "O3'" 1
ATOM 130 C "C2'" . DA A 1 7 ? -9.341 1.281 20.204 1.00 50.00 ? 7 DA A "C2'" 1
ATOM 131 C "C1'" . DA A 1 7 ? -8.548 0.272 21.008 1.00 50.00 ? 7 DA A "C1'" 1
ATOM 132 N N9 . DA A 1 7 ? -8.534 -1.148 20.650 1.00 50.00 ? 7 DA A N9 1
ATOM 133 C C8 . DA A 1 7 ? -7.433 -1.844 20.242 1.00 50.00 ? 7 DA A C8 1
ATOM 134 N N7 . DA A 1 7 ? -7.655 -3.112 20.013 1.00 50.00 ? 7 DA A N7 1
ATOM 135 C C5 . DA A 1 7 ? -8.987 -3.273 20.308 1.00 50.00 ? 7 DA A C5 1
ATOM 136 C C6 . DA A 1 7 ? -9.824 -4.403 20.269 1.00 50.00 ? 7 DA A C6 1
ATOM 137 N N6 . DA A 1 7 ? -9.403 -5.614 19.899 1.00 50.00 ? 7 DA A N6 1
ATOM 138 N N1 . DA A 1 7 ? -11.114 -4.239 20.629 1.00 50.00 ? 7 DA A N1 1
ATOM 139 C C2 . DA A 1 7 ? -11.519 -3.014 20.990 1.00 50.00 ? 7 DA A C2 1
ATOM 140 N N3 . DA A 1 7 ? -10.824 -1.876 21.067 1.00 50.00 ? 7 DA A N3 1
ATOM 141 C C4 . DA A 1 7 ? -9.549 -2.075 20.708 1.00 50.00 ? 7 DA A C4 1
ATOM 142 P P . DT A 1 8 ? -7.508 3.873 19.705 1.00 50.00 ? 8 DT A P 1
ATOM 143 O OP1 . DT A 1 8 ? -6.456 4.861 20.032 1.00 50.00 ? 8 DT A OP1 1
ATOM 144 O OP2 . DT A 1 8 ? -8.734 4.324 19.012 1.00 50.00 ? 8 DT A OP2 1
ATOM 145 O "O5'" . DT A 1 8 ? -6.874 2.669 18.880 1.00 50.00 ? 8 DT A "O5'" 1
ATOM 146 C "C5'" . DT A 1 8 ? -5.667 2.093 19.331 1.00 50.00 ? 8 DT A "C5'" 1
ATOM 147 C "C4'" . DT A 1 8 ? -4.969 1.350 18.202 1.00 50.00 ? 8 DT A "C4'" 1
ATOM 148 O "O4'" . DT A 1 8 ? -5.625 0.091 17.904 1.00 50.00 ? 8 DT A "O4'" 1
ATOM 149 C "C3'" . DT A 1 8 ? -4.933 2.030 16.848 1.00 50.00 ? 8 DT A "C3'" 1
ATOM 150 O "O3'" . DT A 1 8 ? -3.880 1.411 16.165 1.00 50.00 ? 8 DT A "O3'" 1
ATOM 151 C "C2'" . DT A 1 8 ? -6.260 1.610 16.226 1.00 50.00 ? 8 DT A "C2'" 1
ATOM 152 C "C1'" . DT A 1 8 ? -6.210 0.135 16.612 1.00 50.00 ? 8 DT A "C1'" 1
ATOM 153 N N1 . DT A 1 8 ? -7.484 -0.612 16.753 1.00 50.00 ? 8 DT A N1 1
ATOM 154 C C2 . DT A 1 8 ? -7.389 -1.985 16.708 1.00 50.00 ? 8 DT A C2 1
ATOM 155 O O2 . DT A 1 8 ? -6.335 -2.568 16.537 1.00 50.00 ? 8 DT A O2 1
ATOM 156 N N3 . DT A 1 8 ? -8.566 -2.661 16.864 1.00 50.00 ? 8 DT A N3 1
ATOM 157 C C4 . DT A 1 8 ? -9.806 -2.099 17.064 1.00 50.00 ? 8 DT A C4 1
ATOM 158 O O4 . DT A 1 8 ? -10.800 -2.810 17.190 1.00 50.00 ? 8 DT A O4 1
ATOM 159 C C5 . DT A 1 8 ? -9.830 -0.647 17.108 1.00 50.00 ? 8 DT A C5 1
ATOM 160 C C7 . DT A 1 8 ? -11.112 0.097 17.316 1.00 50.00 ? 8 DT A C7 1
ATOM 161 C C6 . DT A 1 8 ? -8.685 0.028 16.958 1.00 50.00 ? 8 DT A C6 1
ATOM 162 P P . DA A 1 9 ? -3.108 2.277 15.095 1.00 50.00 ? 9 DA A P 1
ATOM 163 O OP1 . DA A 1 9 ? -1.736 2.509 15.598 1.00 50.00 ? 9 DA A OP1 1
ATOM 164 O OP2 . DA A 1 9 ? -3.993 3.416 14.747 1.00 50.00 ? 9 DA A OP2 1
ATOM 165 O "O5'" . DA A 1 9 ? -3.011 1.289 13.853 1.00 50.00 ? 9 DA A "O5'" 1
ATOM 166 C "C5'" . DA A 1 9 ? -2.001 0.313 13.892 1.00 50.00 ? 9 DA A "C5'" 1
ATOM 167 C "C4'" . DA A 1 9 ? -2.533 -0.946 13.258 1.00 50.00 ? 9 DA A "C4'" 1
ATOM 168 O "O4'" . DA A 1 9 ? -3.920 -1.164 13.602 1.00 50.00 ? 9 DA A "O4'" 1
ATOM 169 C "C3'" . DA A 1 9 ? -2.551 -0.926 11.738 1.00 50.00 ? 9 DA A "C3'" 1
ATOM 170 O "O3'" . DA A 1 9 ? -1.431 -1.656 11.278 1.00 50.00 ? 9 DA A "O3'" 1
ATOM 171 C "C2'" . DA A 1 9 ? -3.877 -1.607 11.375 1.00 50.00 ? 9 DA A "C2'" 1
ATOM 172 C "C1'" . DA A 1 9 ? -4.284 -2.197 12.713 1.00 50.00 ? 9 DA A "C1'" 1
ATOM 173 N N9 . DA A 1 9 ? -5.681 -2.586 12.901 1.00 50.00 ? 9 DA A N9 1
ATOM 174 C C8 . DA A 1 9 ? -6.130 -3.870 13.013 1.00 50.00 ? 9 DA A C8 1
ATOM 175 N N7 . DA A 1 9 ? -7.420 -3.971 13.199 1.00 50.00 ? 9 DA A N7 1
ATOM 176 C C5 . DA A 1 9 ? -7.848 -2.665 13.214 1.00 50.00 ? 9 DA A C5 1
ATOM 177 C C6 . DA A 1 9 ? -9.125 -2.106 13.376 1.00 50.00 ? 9 DA A C6 1
ATOM 178 N N6 . DA A 1 9 ? -10.220 -2.849 13.552 1.00 50.00 ? 9 DA A N6 1
ATOM 179 N N1 . DA A 1 9 ? -9.228 -0.759 13.346 1.00 50.00 ? 9 DA A N1 1
ATOM 180 C C2 . DA A 1 9 ? -8.116 -0.031 13.166 1.00 50.00 ? 9 DA A C2 1
ATOM 181 N N3 . DA A 1 9 ? -6.859 -0.452 13.002 1.00 50.00 ? 9 DA A N3 1
ATOM 182 C C4 . DA A 1 9 ? -6.792 -1.791 13.035 1.00 50.00 ? 9 DA A C4 1
ATOM 183 P P . DT A 1 10 ? -1.140 -1.780 9.715 1.00 50.00 ? 10 DT A P 1
ATOM 184 O OP1 . DT A 1 10 ? 0.291 -2.127 9.573 1.00 50.00 ? 10 DT A OP1 1
ATOM 185 O OP2 . DT A 1 10 ? -1.674 -0.586 9.018 1.00 50.00 ? 10 DT A OP2 1
ATOM 186 O "O5'" . DT A 1 10 ? -2.037 -3.041 9.324 1.00 50.00 ? 10 DT A "O5'" 1
ATOM 187 C "C5'" . DT A 1 10 ? -1.456 -4.340 9.271 1.00 50.00 ? 10 DT A "C5'" 1
ATOM 188 C "C4'" . DT A 1 10 ? -2.290 -5.212 8.351 1.00 50.00 ? 10 DT A "C4'" 1
ATOM 189 O "O4'" . DT A 1 10 ? -3.658 -5.223 8.840 1.00 50.00 ? 10 DT A "O4'" 1
ATOM 190 C "C3'" . DT A 1 10 ? -2.331 -4.750 6.891 1.00 50.00 ? 10 DT A "C3'" 1
ATOM 191 O "O3'" . DT A 1 10 ? -2.043 -5.868 5.998 1.00 50.00 ? 10 DT A "O3'" 1
ATOM 192 C "C2'" . DT A 1 10 ? -3.702 -4.072 6.757 1.00 50.00 ? 10 DT A "C2'" 1
ATOM 193 C "C1'" . DT A 1 10 ? -4.543 -4.750 7.844 1.00 50.00 ? 10 DT A "C1'" 1
ATOM 194 N N1 . DT A 1 10 ? -5.647 -3.937 8.491 1.00 50.00 ? 10 DT A N1 1
ATOM 195 C C2 . DT A 1 10 ? -6.761 -4.633 8.915 1.00 50.00 ? 10 DT A C2 1
ATOM 196 O O2 . DT A 1 10 ? -6.869 -5.839 8.792 1.00 50.00 ? 10 DT A O2 1
ATOM 197 N N3 . DT A 1 10 ? -7.748 -3.870 9.490 1.00 50.00 ? 10 DT A N3 1
ATOM 198 C C4 . DT A 1 10 ? -7.733 -2.503 9.685 1.00 50.00 ? 10 DT A C4 1
ATOM 199 O O4 . DT A 1 10 ? -8.668 -1.914 10.212 1.00 50.00 ? 10 DT A O4 1
ATOM 200 C C5 . DT A 1 10 ? -6.550 -1.823 9.222 1.00 50.00 ? 10 DT A C5 1
ATOM 201 C C7 . DT A 1 10 ? -6.451 -0.334 9.385 1.00 50.00 ? 10 DT A C7 1
ATOM 202 C C6 . DT A 1 10 ? -5.572 -2.558 8.652 1.00 50.00 ? 10 DT A C6 1
ATOM 203 P P . DA A 1 11 ? -3.075 -6.702 5.080 1.00 50.00 ? 11 DA A P 1
ATOM 204 O OP1 . DA A 1 11 ? -2.279 -7.752 4.399 1.00 50.00 ? 11 DA A OP1 1
ATOM 205 O OP2 . DA A 1 11 ? -3.832 -5.724 4.264 1.00 50.00 ? 11 DA A OP2 1
ATOM 206 O "O5'" . DA A 1 11 ? -4.092 -7.417 6.102 1.00 50.00 ? 11 DA A "O5'" 1
ATOM 207 C "C5'" . DA A 1 11 ? -4.588 -8.756 5.893 1.00 50.00 ? 11 DA A "C5'" 1
ATOM 208 C "C4'" . DA A 1 11 ? -5.931 -8.812 5.158 1.00 50.00 ? 11 DA A "C4'" 1
ATOM 209 O "O4'" . DA A 1 11 ? -6.970 -7.993 5.780 1.00 50.00 ? 11 DA A "O4'" 1
ATOM 210 C "C3'" . DA A 1 11 ? -5.900 -8.380 3.694 1.00 50.00 ? 11 DA A "C3'" 1
ATOM 211 O "O3'" . DA A 1 11 ? -6.735 -9.246 2.921 1.00 50.00 ? 11 DA A "O3'" 1
ATOM 212 C "C2'" . DA A 1 11 ? -6.481 -6.977 3.793 1.00 50.00 ? 11 DA A "C2'" 1
ATOM 213 C "C1'" . DA A 1 11 ? -7.630 -7.327 4.723 1.00 50.00 ? 11 DA A "C1'" 1
ATOM 214 N N9 . DA A 1 11 ? -8.507 -6.224 5.130 1.00 50.00 ? 11 DA A N9 1
ATOM 215 C C8 . DA A 1 11 ? -9.846 -6.356 5.383 1.00 50.00 ? 11 DA A C8 1
ATOM 216 N N7 . DA A 1 11 ? -10.446 -5.238 5.716 1.00 50.00 ? 11 DA A N7 1
ATOM 217 C C5 . DA A 1 11 ? -9.433 -4.301 5.671 1.00 50.00 ? 11 DA A C5 1
ATOM 218 C C6 . DA A 1 11 ? -9.434 -2.922 5.930 1.00 50.00 ? 11 DA A C6 1
ATOM 219 N N6 . DA A 1 11 ? -10.534 -2.257 6.289 1.00 50.00 ? 11 DA A N6 1
ATOM 220 N N1 . DA A 1 11 ? -8.270 -2.257 5.794 1.00 50.00 ? 11 DA A N1 1
ATOM 221 C C2 . DA A 1 11 ? -7.178 -2.943 5.427 1.00 50.00 ? 11 DA A C2 1
ATOM 222 N N3 . DA A 1 11 ? -7.055 -4.243 5.165 1.00 50.00 ? 11 DA A N3 1
ATOM 223 C C4 . DA A 1 11 ? -8.230 -4.879 5.303 1.00 50.00 ? 11 DA A C4 1
ATOM 224 P P . DT A 1 12 ? -7.520 -8.728 1.616 1.00 50.00 ? 12 DT A P 1
ATOM 225 O OP1 . DT A 1 12 ? -7.549 -9.861 0.664 1.00 50.00 ? 12 DT A OP1 1
ATOM 226 O OP2 . DT A 1 12 ? -6.954 -7.429 1.169 1.00 50.00 ? 12 DT A OP2 1
ATOM 227 O "O5'" . DT A 1 12 ? -9.000 -8.469 2.172 1.00 50.00 ? 12 DT A "O5'" 1
ATOM 228 C "C5'" . DT A 1 12 ? -9.985 -9.500 2.156 1.00 50.00 ? 12 DT A "C5'" 1
ATOM 229 C "C4'" . DT A 1 12 ? -11.298 -8.980 1.587 1.00 50.00 ? 12 DT A "C4'" 1
ATOM 230 O "O4'" . DT A 1 12 ? -11.610 -7.704 2.197 1.00 50.00 ? 12 DT A "O4'" 1
ATOM 231 C "C3'" . DT A 1 12 ? -11.337 -8.754 0.075 1.00 50.00 ? 12 DT A "C3'" 1
ATOM 232 O "O3'" . DT A 1 12 ? -12.599 -9.155 -0.452 1.00 50.00 ? 12 DT A "O3'" 1
ATOM 233 C "C2'" . DT A 1 12 ? -11.124 -7.250 -0.059 1.00 50.00 ? 12 DT A "C2'" 1
ATOM 234 C "C1'" . DT A 1 12 ? -11.841 -6.741 1.190 1.00 50.00 ? 12 DT A "C1'" 1
ATOM 235 N N1 . DT A 1 12 ? -11.413 -5.421 1.758 1.00 50.00 ? 12 DT A N1 1
ATOM 236 C C2 . DT A 1 12 ? -12.249 -4.844 2.688 1.00 50.00 ? 12 DT A C2 1
ATOM 237 O O2 . DT A 1 12 ? -13.295 -5.355 3.046 1.00 50.00 ? 12 DT A O2 1
ATOM 238 N N3 . DT A 1 12 ? -11.819 -3.639 3.186 1.00 50.00 ? 12 DT A N3 1
ATOM 239 C C4 . DT A 1 12 ? -10.656 -2.971 2.859 1.00 50.00 ? 12 DT A C4 1
ATOM 240 O O4 . DT A 1 12 ? -10.377 -1.893 3.371 1.00 50.00 ? 12 DT A O4 1
ATOM 241 C C5 . DT A 1 12 ? -9.819 -3.630 1.881 1.00 50.00 ? 12 DT A C5 1
ATOM 242 C C7 . DT A 1 12 ? -8.530 -3.003 1.436 1.00 50.00 ? 12 DT A C7 1
ATOM 243 C C6 . DT A 1 12 ? -10.228 -4.810 1.390 1.00 50.00 ? 12 DT A C6 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DA 3 3 3 DA A A . n
A 1 4 DT 4 4 4 DT T A . n
A 1 5 DA 5 5 5 DA A A . n
A 1 6 DT 6 6 6 DT T A . n
A 1 7 DA 7 7 7 DA A A . n
A 1 8 DT 8 8 8 DT T A . n
A 1 9 DA 9 9 9 DA A A . n
A 1 10 DT 10 10 10 DT T A . n
A 1 11 DA 11 11 11 DA A A . n
A 1 12 DT 12 12 12 DT T A . n
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 36.7545000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2006-03-07
2 'Structure model' 1 1 2008-04-30
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2023-08-23
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_refine_tls.id 1
_pdbx_refine_tls.details ?
_pdbx_refine_tls.method refined
_pdbx_refine_tls.origin_x 17.8580
_pdbx_refine_tls.origin_y 6.8570
_pdbx_refine_tls.origin_z 89.5250
_pdbx_refine_tls.T[1][1] 0.3179
_pdbx_refine_tls.T[2][2] 0.4424
_pdbx_refine_tls.T[3][3] 0.2198
_pdbx_refine_tls.T[1][2] -0.0465
_pdbx_refine_tls.T[1][3] -0.0543
_pdbx_refine_tls.T[2][3] 0.0078
_pdbx_refine_tls.L[1][1] 3.1157
_pdbx_refine_tls.L[2][2] 8.7648
_pdbx_refine_tls.L[3][3] 18.1706
_pdbx_refine_tls.L[1][2] 1.2362
_pdbx_refine_tls.L[1][3] -6.2853
_pdbx_refine_tls.L[2][3] -9.2344
_pdbx_refine_tls.S[1][1] -0.0855
_pdbx_refine_tls.S[1][2] -0.0718
_pdbx_refine_tls.S[1][3] 0.5401
_pdbx_refine_tls.S[2][1] -0.7330
_pdbx_refine_tls.S[2][2] -0.6916
_pdbx_refine_tls.S[2][3] -0.1924
_pdbx_refine_tls.S[3][1] -0.5044
_pdbx_refine_tls.S[3][2] 1.3114
_pdbx_refine_tls.S[3][3] 0.7770
_pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_pdbx_refine_tls_group.id 1
_pdbx_refine_tls_group.refine_tls_id 1
_pdbx_refine_tls_group.beg_auth_asym_id A
_pdbx_refine_tls_group.beg_auth_seq_id 1
_pdbx_refine_tls_group.beg_label_asym_id A
_pdbx_refine_tls_group.beg_label_seq_id 1
_pdbx_refine_tls_group.end_auth_asym_id A
_pdbx_refine_tls_group.end_auth_seq_id 12
_pdbx_refine_tls_group.end_label_asym_id A
_pdbx_refine_tls_group.end_label_seq_id 12
_pdbx_refine_tls_group.selection ?
_pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls_group.selection_details ?
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.2.0019 ? 1
HKL-2000 'data reduction' . ? 2
SCALEPACK 'data scaling' . ? 3
AMoRE phasing . ? 4
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C1'" A DC 1 ? ? "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 103.99 110.10 -6.11 1.00 N
2 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 95.94 102.40 -6.46 0.80 N
3 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.50 108.30 5.20 0.30 N
4 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.12 108.30 2.82 0.30 N
5 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.76 108.30 2.46 0.30 N
6 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.71 108.30 3.41 0.30 N
7 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.79 108.30 2.49 0.30 N
8 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? "C2'" A DA 7 ? ? 100.74 105.90 -5.16 0.80 N
9 1 "C1'" A DA 9 ? ? "O4'" A DA 9 ? ? "C4'" A DA 9 ? ? 102.01 110.10 -8.09 1.00 N
10 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.12 108.30 2.82 0.30 N
11 1 "C3'" A DT 10 ? ? "O3'" A DT 10 ? ? P A DA 11 ? ? 128.16 119.70 8.46 1.20 Y
12 1 "C3'" A DA 11 ? ? "C2'" A DA 11 ? ? "C1'" A DA 11 ? ? 96.67 102.40 -5.73 0.80 N
13 1 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 115.22 108.30 6.92 0.30 N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
#
_ndb_struct_conf_na.entry_id 2AF1
_ndb_struct_conf_na.feature 'double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DA 3 1_555 A DT 12 12_555 0.188 -3.044 0.905 -20.004 12.296 70.816 1 A_DA3:DT12_A A 3 ? A 12 ? 23 3
1 A DT 4 1_555 A DA 11 12_555 -0.096 2.880 0.833 -0.817 -3.513 -73.240 2 A_DT4:DA11_A A 4 ? A 11 ? 23 3
1 A DA 5 1_555 A DT 10 12_555 0.103 -3.447 0.827 -11.707 4.863 65.166 3 A_DA5:DT10_A A 5 ? A 10 ? 23 3
1 A DT 6 1_555 A DA 9 12_555 -0.266 2.939 0.304 -12.530 -0.183 -66.018 4 A_DT6:DA9_A A 6 ? A 9 ? 23 3
1 A DA 7 1_555 A DT 8 12_555 -0.566 -2.227 0.297 -15.918 5.878 66.740 5 A_DA7:DT8_A A 7 ? A 8 ? 23 3
1 A DT 8 1_555 A DA 7 12_555 0.566 2.227 -0.297 15.918 -5.878 -66.740 6 A_DT8:DA7_A A 8 ? A 7 ? 23 3
1 A DA 9 1_555 A DT 6 12_555 0.266 -2.939 -0.304 12.530 0.183 66.018 7 A_DA9:DT6_A A 9 ? A 6 ? 23 3
1 A DT 10 1_555 A DA 5 12_555 -0.103 3.447 -0.827 11.707 -4.863 -65.166 8 A_DT10:DA5_A A 10 ? A 5 ? 23 3
1 A DA 11 1_555 A DT 4 12_555 0.096 -2.880 -0.833 0.817 3.513 73.240 9 A_DA11:DT4_A A 11 ? A 4 ? 23 3
1 A DT 12 1_555 A DA 3 12_555 -0.188 3.044 -0.905 20.004 -12.296 -70.816 10 A_DT12:DA3_A A 12 ? A 3 ? 23 3
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DA 3 1_555 A DT 12 12_555 A DT 4 1_555 A DA 11 12_555 -2.086 -2.178 -2.935 81.474 -145.259 52.102 -2.034 0.522 -0.507
-75.910 -42.577 167.920 1 AA_DA3DT4:DA11DT12_AA A 3 ? A 12 ? A 4 ? A 11 ?
1 A DT 4 1_555 A DA 11 12_555 A DA 5 1_555 A DT 10 12_555 -1.203 -3.529 3.010 -154.631 78.831 16.883 -2.342 -0.524 -0.083
40.662 79.761 173.635 2 AA_DT4DA5:DT10DA11_AA A 4 ? A 11 ? A 5 ? A 10 ?
1 A DA 5 1_555 A DT 10 12_555 A DT 6 1_555 A DA 9 12_555 -1.372 -3.771 -0.119 82.897 -148.474 161.549 -1.879 0.690 0.301
-74.293 -41.480 178.407 3 AA_DA5DT6:DA9DT10_AA A 5 ? A 10 ? A 6 ? A 9 ?
1 A DT 6 1_555 A DA 9 12_555 A DA 7 1_555 A DT 8 12_555 0.340 3.861 -3.019 151.798 -82.678 -56.879 -2.375 -0.641 -0.079
42.233 77.541 -173.716 4 AA_DT6DA7:DT8DA9_AA A 6 ? A 9 ? A 7 ? A 8 ?
1 A DA 7 1_555 A DT 8 12_555 A DT 8 1_555 A DA 7 12_555 -2.382 -2.864 0.000 69.385 -165.180 180.000 -1.432 1.191 0.000
-82.590 -34.693 180.000 5 AA_DA7DT8:DA7DT8_AA A 7 ? A 8 ? A 8 ? A 7 ?
1 A DT 8 1_555 A DA 7 12_555 A DA 9 1_555 A DT 6 12_555 -0.340 -3.861 3.019 -151.798 82.678 56.879 -2.375 -0.641 0.079
42.233 77.541 173.716 6 AA_DT8DA9:DT6DA7_AA A 8 ? A 7 ? A 9 ? A 6 ?
1 A DA 9 1_555 A DT 6 12_555 A DT 10 1_555 A DA 5 12_555 1.372 3.771 0.119 -82.897 148.474 -161.550 -1.879 0.690 -0.301
-74.293 -41.480 -178.407 7 AA_DA9DT10:DA5DT6_AA A 9 ? A 6 ? A 10 ? A 5 ?
1 A DT 10 1_555 A DA 5 12_555 A DA 11 1_555 A DT 4 12_555 1.203 3.529 -3.010 154.631 -78.831 -16.883 -2.342 -0.524 0.083
40.662 79.761 -173.636 8 AA_DT10DA11:DT4DA5_AA A 10 ? A 5 ? A 11 ? A 4 ?
1 A DA 11 1_555 A DT 4 12_555 A DT 12 1_555 A DA 3 12_555 2.086 2.178 2.935 -81.474 145.259 -52.102 -2.034 0.522 0.507
-75.910 -42.577 -167.920 9 AA_DA11DT12:DA3DT4_AA A 11 ? A 4 ? A 12 ? A 3 ?
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1GQU
_pdbx_initial_refinement_model.details 'pdb entry 1GQU'
#