data_278D
#
_entry.id 278D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 278D pdb_0000278d 10.2210/pdb278d/pdb
RCSB DDF068 ? ?
WWPDB D_1000177690 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1996-09-16
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_conn
5 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
4 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
5 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
6 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 278D
_pdbx_database_status.recvd_initial_deposition_date 1996-07-22
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Gao, Y.-G.' 1
'Priebe, W.' 2
'Wang, A.H.-J.' 3
#
_citation.id primary
_citation.title
;Substitutions at C2' of daunosamine in the anticancer drug daunorubicin alter its DNA-binding sequence specificity.
;
_citation.journal_abbrev Eur.J.Biochem.
_citation.journal_volume 240
_citation.page_first 331
_citation.page_last 335
_citation.year 1996
_citation.journal_id_ASTM EJBCAI
_citation.country IX
_citation.journal_id_ISSN 0014-2956
_citation.journal_id_CSD 0262
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 8841395
_citation.pdbx_database_id_DOI 10.1111/j.1432-1033.1996.0331h.x
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Gao, Y.G.' 1 ?
primary 'Priebe, W.' 2 ?
primary 'Wang, A.H.' 3 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man
;DNA (5'-D(*CP*GP*(G49)P*CP*CP*G)-3'
;
1824.232 1 ? ? ? ?
2 non-polymer syn "2'-BROMO-4'-EPIDAUNORUBICIN" 606.416 1 ? ? ? ?
3 water nat water 18.015 43 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(G49)(DC)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGGCCG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 "2'-BROMO-4'-EPIDAUNORUBICIN" DM8
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 G49 n
1 4 DC n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ?
'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O7 P' 347.221
DM8 non-polymer . "2'-BROMO-4'-EPIDAUNORUBICIN" 'WP401; DAUNOMYCIN DERIVATIVE; DAUNORUBICIN DERIVATIVE'
'C27 H28 Br N O10' 606.416
G49 'DNA linking' n "N2-METHYL-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" ?
'C11 H16 N5 O7 P' 361.248
HOH non-polymer . WATER ? 'H2 O'
18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 G49 3 3 3 G49 +G A . n
A 1 4 DC 4 4 4 DC C A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DM8 1 7 7 DM8 DM8 A .
C 3 HOH 1 8 8 HOH HOH A .
C 3 HOH 2 9 9 HOH HOH A .
C 3 HOH 3 10 10 HOH HOH A .
C 3 HOH 4 11 11 HOH HOH A .
C 3 HOH 5 12 12 HOH HOH A .
C 3 HOH 6 13 13 HOH HOH A .
C 3 HOH 7 14 14 HOH HOH A .
C 3 HOH 8 15 15 HOH HOH A .
C 3 HOH 9 16 16 HOH HOH A .
C 3 HOH 10 17 17 HOH HOH A .
C 3 HOH 11 18 18 HOH HOH A .
C 3 HOH 12 19 19 HOH HOH A .
C 3 HOH 13 20 20 HOH HOH A .
C 3 HOH 14 21 21 HOH HOH A .
C 3 HOH 15 22 22 HOH HOH A .
C 3 HOH 16 23 23 HOH HOH A .
C 3 HOH 17 24 24 HOH HOH A .
C 3 HOH 18 25 25 HOH HOH A .
C 3 HOH 19 26 26 HOH HOH A .
C 3 HOH 20 27 27 HOH HOH A .
C 3 HOH 21 28 28 HOH HOH A .
C 3 HOH 22 29 29 HOH HOH A .
C 3 HOH 23 30 30 HOH HOH A .
C 3 HOH 24 31 31 HOH HOH A .
C 3 HOH 25 32 32 HOH HOH A .
C 3 HOH 26 33 33 HOH HOH A .
C 3 HOH 27 34 34 HOH HOH A .
C 3 HOH 28 35 35 HOH HOH A .
C 3 HOH 29 36 36 HOH HOH A .
C 3 HOH 30 37 37 HOH HOH A .
C 3 HOH 31 38 38 HOH HOH A .
C 3 HOH 32 39 39 HOH HOH A .
C 3 HOH 33 40 40 HOH HOH A .
C 3 HOH 34 41 41 HOH HOH A .
C 3 HOH 35 42 42 HOH HOH A .
C 3 HOH 36 43 43 HOH HOH A .
C 3 HOH 37 44 44 HOH HOH A .
C 3 HOH 38 45 45 HOH HOH A .
C 3 HOH 39 46 46 HOH HOH A .
C 3 HOH 40 47 47 HOH HOH A .
C 3 HOH 41 48 48 HOH HOH A .
C 3 HOH 42 49 49 HOH HOH A .
C 3 HOH 43 50 50 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
MSC 'data collection' . ? 1
NUCLSQ refinement . ? 2
MSC 'data reduction' . ? 3
#
_cell.entry_id 278D
_cell.length_a 28.250
_cell.length_b 28.250
_cell.length_c 53.670
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 278D
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 92
#
_exptl.entry_id 278D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 56.25
_exptl_crystal.density_Matthews 2.81
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp 298.00
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH 6.00
_exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION, temperature 298.00K'
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 BACL2 ? ? ?
1 4 1 'NA CACODYLATE' ? ? ?
1 5 1 SPERMINE ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 293.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'RIGAKU RAXIS IIC'
_diffrn_detector.pdbx_collection_date 1995-08-06
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU RU200'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 278D
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high ?
_reflns.number_obs ?
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs 0.06
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 4.000
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 278D
_refine.ls_number_reflns_obs 1860
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 4.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 10.000
_refine.ls_d_res_high 1.800
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.183
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 40
_refine_hist.number_atoms_solvent 43
_refine_hist.number_atoms_total 203
_refine_hist.d_res_high 1.800
_refine_hist.d_res_low 10.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
n_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ?
n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 278D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 278D
_struct.title
;SUBSTITUTIONS AT C2' OF DAUNOSAMINE IN THE ANTICANCER DAUNORUBICIN ALTER ITS DNA-BINDING SEQUENCE SPECIFICITY
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 278D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 278D
_struct_ref.pdbx_db_accession 278D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 278D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 278D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.2500000000 -1.0000000000
0.0000000000 0.0000000000 28.2500000000 0.0000000000 0.0000000000 -1.0000000000 26.8350000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 2 "O3'" ? ? ? 1_555 A G49 3 P ? ? A DG 2 A G49 3 1_555 ? ? ? ? ? ? ? 1.595 ? ?
covale2 covale one ? A G49 3 "O3'" ? ? ? 1_555 A DC 4 P ? ? A G49 3 A DC 4 1_555 ? ? ? ? ? ? ? 1.581 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A G49 3 N1 ? ? ? 1_555 A DC 4 N3 ? ? A G49 3 A DC 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A G49 3 N2 ? ? ? 1_555 A DC 4 O2 ? ? A G49 3 A DC 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A G49 3 O6 ? ? ? 1_555 A DC 4 N4 ? ? A G49 3 A DC 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A G49 3 N1 ? ? A DC 4 A G49 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A G49 3 O6 ? ? A DC 4 A G49 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A G49 3 N2 ? ? A DC 4 A G49 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A DM8 7 ? 8 'BINDING SITE FOR RESIDUE DM8 A 7'
'DRUG BINDING SITE' ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 8 DC A 1 ? DC A 1 . ? 8_665 ?
2 AC1 8 DG A 2 ? DG A 2 . ? 8_665 ?
3 AC1 8 G49 A 3 ? G49 A 3 . ? 8_665 ?
4 AC1 8 DC A 5 ? DC A 5 . ? 1_555 ?
5 AC1 8 DG A 6 ? DG A 6 . ? 1_555 ?
6 AC1 8 HOH C . ? HOH A 8 . ? 1_555 ?
7 AC1 8 HOH C . ? HOH A 12 . ? 1_555 ?
8 AC1 8 HOH C . ? HOH A 19 . ? 1_555 ?
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 O
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 HOH
_pdbx_validate_close_contact.auth_seq_id_1 32
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 HOH
_pdbx_validate_close_contact.auth_seq_id_2 34
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.11
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 CM2
_pdbx_validate_symm_contact.auth_asym_id_1 A
_pdbx_validate_symm_contact.auth_comp_id_1 G49
_pdbx_validate_symm_contact.auth_seq_id_1 3
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 "N3'"
_pdbx_validate_symm_contact.auth_asym_id_2 A
_pdbx_validate_symm_contact.auth_comp_id_2 DM8
_pdbx_validate_symm_contact.auth_seq_id_2 7
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 8_665
_pdbx_validate_symm_contact.dist 1.89
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.36 108.30 3.06 0.30 N
2 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 124.59 119.90 4.69 0.50 N
3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 119.19 121.90 -2.71 0.40 N
4 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 122.95 118.00 4.95 0.70 N
5 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 97.10 102.40 -5.30 0.80 N
6 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 114.03 108.30 5.73 0.30 N
7 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 114.53 111.50 3.03 0.50 N
8 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.15 128.60 -4.45 0.60 N
9 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A G49 3 ? ? 129.40 119.70 9.70 1.20 Y
10 1 OP1 A DC 5 ? ? P A DC 5 ? ? OP2 A DC 5 ? ? 133.01 119.60 13.41 1.50 N
11 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 104.51 109.40 -4.89 0.80 N
12 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 117.54 108.30 9.24 0.30 N
13 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 128.69 119.70 8.99 1.20 Y
14 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 124.77 128.60 -3.83 0.60 N
#
_pdbx_struct_mod_residue.id 1
_pdbx_struct_mod_residue.label_asym_id A
_pdbx_struct_mod_residue.label_comp_id G49
_pdbx_struct_mod_residue.label_seq_id 3
_pdbx_struct_mod_residue.auth_asym_id A
_pdbx_struct_mod_residue.auth_comp_id G49
_pdbx_struct_mod_residue.auth_seq_id 3
_pdbx_struct_mod_residue.PDB_ins_code ?
_pdbx_struct_mod_residue.parent_comp_id DG
_pdbx_struct_mod_residue.details ?
#
_struct_site_keywords.site_id 'DRUG BINDING SITE'
_struct_site_keywords.text INTERCALATION
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DC OP3 O N N 1
DC P P N N 2
DC OP1 O N N 3
DC OP2 O N N 4
DC "O5'" O N N 5
DC "C5'" C N N 6
DC "C4'" C N R 7
DC "O4'" O N N 8
DC "C3'" C N S 9
DC "O3'" O N N 10
DC "C2'" C N N 11
DC "C1'" C N R 12
DC N1 N N N 13
DC C2 C N N 14
DC O2 O N N 15
DC N3 N N N 16
DC C4 C N N 17
DC N4 N N N 18
DC C5 C N N 19
DC C6 C N N 20
DC HOP3 H N N 21
DC HOP2 H N N 22
DC "H5'" H N N 23
DC "H5''" H N N 24
DC "H4'" H N N 25
DC "H3'" H N N 26
DC "HO3'" H N N 27
DC "H2'" H N N 28
DC "H2''" H N N 29
DC "H1'" H N N 30
DC H41 H N N 31
DC H42 H N N 32
DC H5 H N N 33
DC H6 H N N 34
DG OP3 O N N 35
DG P P N N 36
DG OP1 O N N 37
DG OP2 O N N 38
DG "O5'" O N N 39
DG "C5'" C N N 40
DG "C4'" C N R 41
DG "O4'" O N N 42
DG "C3'" C N S 43
DG "O3'" O N N 44
DG "C2'" C N N 45
DG "C1'" C N R 46
DG N9 N Y N 47
DG C8 C Y N 48
DG N7 N Y N 49
DG C5 C Y N 50
DG C6 C N N 51
DG O6 O N N 52
DG N1 N N N 53
DG C2 C N N 54
DG N2 N N N 55
DG N3 N N N 56
DG C4 C Y N 57
DG HOP3 H N N 58
DG HOP2 H N N 59
DG "H5'" H N N 60
DG "H5''" H N N 61
DG "H4'" H N N 62
DG "H3'" H N N 63
DG "HO3'" H N N 64
DG "H2'" H N N 65
DG "H2''" H N N 66
DG "H1'" H N N 67
DG H8 H N N 68
DG H1 H N N 69
DG H21 H N N 70
DG H22 H N N 71
DM8 C1 C Y N 72
DM8 C2 C Y N 73
DM8 C3 C Y N 74
DM8 C4 C Y N 75
DM8 C5 C N N 76
DM8 C6 C Y N 77
DM8 C7 C N S 78
DM8 C8 C N N 79
DM8 C9 C N S 80
DM8 C10 C N N 81
DM8 C11 C Y N 82
DM8 C12 C N N 83
DM8 C13 C N N 84
DM8 C14 C N N 85
DM8 C15 C Y N 86
DM8 C16 C Y N 87
DM8 C17 C Y N 88
DM8 C18 C Y N 89
DM8 C19 C Y N 90
DM8 C20 C Y N 91
DM8 C21 C N N 92
DM8 O4 O N N 93
DM8 O5 O N N 94
DM8 O6 O N N 95
DM8 O7 O N N 96
DM8 O9 O N N 97
DM8 O11 O N N 98
DM8 O12 O N N 99
DM8 O13 O N N 100
DM8 "C1'" C N R 101
DM8 "C2'" C N R 102
DM8 "C3'" C N R 103
DM8 "C4'" C N R 104
DM8 "C5'" C N S 105
DM8 "C6'" C N N 106
DM8 "O5'" O N N 107
DM8 "O4'" O N N 108
DM8 "N3'" N N N 109
DM8 BR BR N N 110
DM8 H1 H N N 111
DM8 H2 H N N 112
DM8 H3 H N N 113
DM8 H7 H N N 114
DM8 H81 H N N 115
DM8 H82 H N N 116
DM8 H101 H N N 117
DM8 H102 H N N 118
DM8 H141 H N N 119
DM8 H142 H N N 120
DM8 H143 H N N 121
DM8 H211 H N N 122
DM8 H212 H N N 123
DM8 H213 H N N 124
DM8 H6 H N N 125
DM8 H9 H N N 126
DM8 H11 H N N 127
DM8 "H1'" H N N 128
DM8 "H2'" H N N 129
DM8 "H3'" H N N 130
DM8 "H4'" H N N 131
DM8 "H5'" H N N 132
DM8 "H6'1" H N N 133
DM8 "H6'2" H N N 134
DM8 "H6'3" H N N 135
DM8 "HO4'" H N N 136
DM8 "HN'1" H N N 137
DM8 "HN'2" H N N 138
G49 P P N N 139
G49 O1P O N N 140
G49 O2P O N N 141
G49 O3P O N N 142
G49 "O5'" O N N 143
G49 "C5'" C N N 144
G49 "C4'" C N R 145
G49 "O4'" O N N 146
G49 "C3'" C N S 147
G49 "O3'" O N N 148
G49 "C2'" C N N 149
G49 "C1'" C N R 150
G49 N9 N Y N 151
G49 C8 C Y N 152
G49 N7 N Y N 153
G49 C5 C Y N 154
G49 C6 C N N 155
G49 O6 O N N 156
G49 N1 N N N 157
G49 C2 C N N 158
G49 N2 N N N 159
G49 CM2 C N N 160
G49 N3 N N N 161
G49 C4 C Y N 162
G49 H2P H N N 163
G49 H3P H N N 164
G49 "H5'1" H N N 165
G49 "H5'2" H N N 166
G49 "H4'" H N N 167
G49 "H3'" H N N 168
G49 HA H N N 169
G49 "H2'1" H N N 170
G49 "H2'2" H N N 171
G49 "H1'" H N N 172
G49 H8 H N N 173
G49 H1 H N N 174
G49 H2 H N N 175
G49 HM21 H N N 176
G49 HM22 H N N 177
G49 HM23 H N N 178
HOH O O N N 179
HOH H1 H N N 180
HOH H2 H N N 181
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DC OP3 P sing N N 1
DC OP3 HOP3 sing N N 2
DC P OP1 doub N N 3
DC P OP2 sing N N 4
DC P "O5'" sing N N 5
DC OP2 HOP2 sing N N 6
DC "O5'" "C5'" sing N N 7
DC "C5'" "C4'" sing N N 8
DC "C5'" "H5'" sing N N 9
DC "C5'" "H5''" sing N N 10
DC "C4'" "O4'" sing N N 11
DC "C4'" "C3'" sing N N 12
DC "C4'" "H4'" sing N N 13
DC "O4'" "C1'" sing N N 14
DC "C3'" "O3'" sing N N 15
DC "C3'" "C2'" sing N N 16
DC "C3'" "H3'" sing N N 17
DC "O3'" "HO3'" sing N N 18
DC "C2'" "C1'" sing N N 19
DC "C2'" "H2'" sing N N 20
DC "C2'" "H2''" sing N N 21
DC "C1'" N1 sing N N 22
DC "C1'" "H1'" sing N N 23
DC N1 C2 sing N N 24
DC N1 C6 sing N N 25
DC C2 O2 doub N N 26
DC C2 N3 sing N N 27
DC N3 C4 doub N N 28
DC C4 N4 sing N N 29
DC C4 C5 sing N N 30
DC N4 H41 sing N N 31
DC N4 H42 sing N N 32
DC C5 C6 doub N N 33
DC C5 H5 sing N N 34
DC C6 H6 sing N N 35
DG OP3 P sing N N 36
DG OP3 HOP3 sing N N 37
DG P OP1 doub N N 38
DG P OP2 sing N N 39
DG P "O5'" sing N N 40
DG OP2 HOP2 sing N N 41
DG "O5'" "C5'" sing N N 42
DG "C5'" "C4'" sing N N 43
DG "C5'" "H5'" sing N N 44
DG "C5'" "H5''" sing N N 45
DG "C4'" "O4'" sing N N 46
DG "C4'" "C3'" sing N N 47
DG "C4'" "H4'" sing N N 48
DG "O4'" "C1'" sing N N 49
DG "C3'" "O3'" sing N N 50
DG "C3'" "C2'" sing N N 51
DG "C3'" "H3'" sing N N 52
DG "O3'" "HO3'" sing N N 53
DG "C2'" "C1'" sing N N 54
DG "C2'" "H2'" sing N N 55
DG "C2'" "H2''" sing N N 56
DG "C1'" N9 sing N N 57
DG "C1'" "H1'" sing N N 58
DG N9 C8 sing Y N 59
DG N9 C4 sing Y N 60
DG C8 N7 doub Y N 61
DG C8 H8 sing N N 62
DG N7 C5 sing Y N 63
DG C5 C6 sing N N 64
DG C5 C4 doub Y N 65
DG C6 O6 doub N N 66
DG C6 N1 sing N N 67
DG N1 C2 sing N N 68
DG N1 H1 sing N N 69
DG C2 N2 sing N N 70
DG C2 N3 doub N N 71
DG N2 H21 sing N N 72
DG N2 H22 sing N N 73
DG N3 C4 sing N N 74
DM8 C1 C2 doub Y N 75
DM8 C1 C15 sing Y N 76
DM8 C1 H1 sing N N 77
DM8 C2 C3 sing Y N 78
DM8 C2 H2 sing N N 79
DM8 C3 C4 doub Y N 80
DM8 C3 H3 sing N N 81
DM8 C4 C16 sing Y N 82
DM8 C4 O4 sing N N 83
DM8 C5 C16 sing N N 84
DM8 C5 C17 sing N N 85
DM8 C5 O5 doub N N 86
DM8 C6 C17 doub Y N 87
DM8 C6 C20 sing Y N 88
DM8 C6 O6 sing N N 89
DM8 C7 C8 sing N N 90
DM8 C7 C20 sing N N 91
DM8 C7 O7 sing N N 92
DM8 C7 H7 sing N N 93
DM8 C8 C9 sing N N 94
DM8 C8 H81 sing N N 95
DM8 C8 H82 sing N N 96
DM8 C9 C10 sing N N 97
DM8 C9 C13 sing N N 98
DM8 C9 O9 sing N N 99
DM8 C10 C19 sing N N 100
DM8 C10 H101 sing N N 101
DM8 C10 H102 sing N N 102
DM8 C11 C18 doub Y N 103
DM8 C11 C19 sing Y N 104
DM8 C11 O11 sing N N 105
DM8 C12 C15 sing N N 106
DM8 C12 C18 sing N N 107
DM8 C12 O12 doub N N 108
DM8 C13 C14 sing N N 109
DM8 C13 O13 doub N N 110
DM8 C14 H141 sing N N 111
DM8 C14 H142 sing N N 112
DM8 C14 H143 sing N N 113
DM8 C15 C16 doub Y N 114
DM8 C17 C18 sing Y N 115
DM8 C19 C20 doub Y N 116
DM8 C21 O4 sing N N 117
DM8 C21 H211 sing N N 118
DM8 C21 H212 sing N N 119
DM8 C21 H213 sing N N 120
DM8 O6 H6 sing N N 121
DM8 O7 "C1'" sing N N 122
DM8 O9 H9 sing N N 123
DM8 O11 H11 sing N N 124
DM8 "C1'" "C2'" sing N N 125
DM8 "C1'" "O5'" sing N N 126
DM8 "C1'" "H1'" sing N N 127
DM8 "C2'" "C3'" sing N N 128
DM8 "C2'" BR sing N N 129
DM8 "C2'" "H2'" sing N N 130
DM8 "C3'" "C4'" sing N N 131
DM8 "C3'" "N3'" sing N N 132
DM8 "C3'" "H3'" sing N N 133
DM8 "C4'" "C5'" sing N N 134
DM8 "C4'" "O4'" sing N N 135
DM8 "C4'" "H4'" sing N N 136
DM8 "C5'" "C6'" sing N N 137
DM8 "C5'" "O5'" sing N N 138
DM8 "C5'" "H5'" sing N N 139
DM8 "C6'" "H6'1" sing N N 140
DM8 "C6'" "H6'2" sing N N 141
DM8 "C6'" "H6'3" sing N N 142
DM8 "O4'" "HO4'" sing N N 143
DM8 "N3'" "HN'1" sing N N 144
DM8 "N3'" "HN'2" sing N N 145
G49 P O1P doub N N 146
G49 P O2P sing N N 147
G49 P O3P sing N N 148
G49 P "O5'" sing N N 149
G49 O2P H2P sing N N 150
G49 O3P H3P sing N N 151
G49 "O5'" "C5'" sing N N 152
G49 "C5'" "C4'" sing N N 153
G49 "C5'" "H5'1" sing N N 154
G49 "C5'" "H5'2" sing N N 155
G49 "C4'" "O4'" sing N N 156
G49 "C4'" "C3'" sing N N 157
G49 "C4'" "H4'" sing N N 158
G49 "O4'" "C1'" sing N N 159
G49 "C3'" "O3'" sing N N 160
G49 "C3'" "C2'" sing N N 161
G49 "C3'" "H3'" sing N N 162
G49 "O3'" HA sing N N 163
G49 "C2'" "C1'" sing N N 164
G49 "C2'" "H2'1" sing N N 165
G49 "C2'" "H2'2" sing N N 166
G49 "C1'" N9 sing N N 167
G49 "C1'" "H1'" sing N N 168
G49 N9 C8 sing Y N 169
G49 N9 C4 sing Y N 170
G49 C8 N7 doub Y N 171
G49 C8 H8 sing N N 172
G49 N7 C5 sing Y N 173
G49 C5 C6 sing N N 174
G49 C5 C4 doub Y N 175
G49 C6 O6 doub N N 176
G49 C6 N1 sing N N 177
G49 N1 C2 sing N N 178
G49 N1 H1 sing N N 179
G49 C2 N2 sing N N 180
G49 C2 N3 doub N N 181
G49 N2 CM2 sing N N 182
G49 N2 H2 sing N N 183
G49 CM2 HM21 sing N N 184
G49 CM2 HM22 sing N N 185
G49 CM2 HM23 sing N N 186
G49 N3 C4 sing N N 187
HOH O H1 sing N N 188
HOH O H2 sing N N 189
#
_ndb_struct_conf_na.entry_id 278D
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 8_665 0.146 -0.187 0.275 8.221 2.878 -3.049 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 8_665 -0.138 -0.173 0.343 -14.259 1.711 -0.691 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A G49 3 1_555 A DC 4 8_665 -0.140 -0.207 0.519 -6.746 -7.872 1.506 3 A_G493:DC4_A A 3 ? A 4 ? 19 1
1 A DC 4 1_555 A G49 3 8_665 0.140 -0.207 0.519 6.746 -7.872 1.506 4 A_DC4:G493_A A 4 ? A 3 ? 19 1
1 A DC 5 1_555 A DG 2 8_665 0.138 -0.173 0.343 14.259 1.711 -0.691 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 8_665 -0.146 -0.187 0.275 -8.221 2.878 -3.049 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.310 0.964 6.976 -0.453 -2.218 33.649 2.426 -2.415 6.882 -3.826
0.781 33.723 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 8_665 A G49 3 1_555 A DC 4 8_665 -1.409 0.729 3.203 -3.873 2.892 31.158 0.796 1.861 3.401 5.343
7.156 31.522 2 AA_DG2G493:DC4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A G49 3 1_555 A DC 4 8_665 A DC 4 1_555 A G49 3 8_665 0.000 -0.315 3.068 0.000 -0.205 32.351 -0.531 0.000 3.069 -0.367
0.000 32.352 3 AA_G493DC4:G493DC4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DC 4 1_555 A G49 3 8_665 A DC 5 1_555 A DG 2 8_665 1.409 0.729 3.203 3.873 2.892 31.158 0.796 -1.861 3.401 5.343
-7.156 31.522 4 AA_DC4DC5:DG2G493_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.310 0.964 6.976 0.453 -2.218 33.649 2.426 2.415 6.882 -3.826
-0.781 33.723 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_atom_sites.entry_id 278D
_atom_sites.fract_transf_matrix[1][1] 0.035398
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.035398
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.018632
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
BR
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 9.355 20.170 22.563 1.00 18.91 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 9.657 21.043 23.684 1.00 17.71 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 11.135 21.018 23.895 1.00 17.43 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 11.462 19.925 24.738 1.00 16.76 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 12.041 20.857 22.678 1.00 17.37 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 13.239 21.625 22.905 1.00 18.18 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 12.318 19.360 22.636 1.00 16.86 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 12.394 19.041 24.153 1.00 16.08 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 12.002 17.651 24.348 1.00 15.02 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 12.993 16.685 24.543 1.00 14.41 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 14.151 17.035 24.590 1.00 14.23 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 12.569 15.400 24.643 1.00 13.79 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 11.298 15.024 24.632 1.00 13.80 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 10.920 13.756 24.722 1.00 13.61 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 10.273 16.018 24.443 1.00 14.00 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 10.691 17.275 24.290 1.00 14.52 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 13.804 22.710 21.878 1.00 21.92 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 14.883 23.362 22.605 1.00 21.47 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 12.640 23.391 21.283 1.00 21.67 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 14.451 21.701 20.788 1.00 19.03 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 15.781 21.125 21.088 1.00 18.03 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 16.140 20.309 19.845 1.00 17.66 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 15.366 19.137 19.829 1.00 17.13 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 15.880 21.009 18.518 1.00 17.58 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 16.919 20.806 17.564 1.00 18.48 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 14.586 20.348 18.012 1.00 17.15 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 14.897 18.945 18.481 1.00 16.33 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 13.702 18.120 18.381 1.00 15.41 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 12.386 18.467 18.339 1.00 15.10 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 11.572 17.448 18.207 1.00 14.70 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 12.431 16.343 18.139 1.00 14.38 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 12.194 14.959 18.002 1.00 14.21 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 11.067 14.451 17.923 1.00 14.19 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 13.318 14.191 17.996 1.00 13.69 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 14.575 14.708 18.112 1.00 13.67 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 15.609 13.857 18.081 1.00 13.26 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 14.877 15.979 18.260 1.00 14.00 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 13.742 16.741 18.265 1.00 14.68 ? 2 DG A C4 1
HETATM 39 P P . G49 A 1 3 ? 17.911 21.868 16.906 1.00 22.12 ? 3 G49 A P 1
HETATM 40 O O1P . G49 A 1 3 ? 18.224 22.905 17.938 1.00 23.68 ? 3 G49 A O1P 1
HETATM 41 O O2P . G49 A 1 3 ? 17.174 22.306 15.700 1.00 22.89 ? 3 G49 A O2P 1
HETATM 42 O "O5'" . G49 A 1 3 ? 19.272 21.038 16.495 1.00 17.48 ? 3 G49 A "O5'" 1
HETATM 43 C "C5'" . G49 A 1 3 ? 20.148 20.371 17.396 1.00 16.32 ? 3 G49 A "C5'" 1
HETATM 44 C "C4'" . G49 A 1 3 ? 20.363 18.987 16.817 1.00 16.18 ? 3 G49 A "C4'" 1
HETATM 45 O "O4'" . G49 A 1 3 ? 19.199 18.193 16.838 1.00 15.94 ? 3 G49 A "O4'" 1
HETATM 46 C "C3'" . G49 A 1 3 ? 20.826 19.018 15.358 1.00 16.03 ? 3 G49 A "C3'" 1
HETATM 47 O "O3'" . G49 A 1 3 ? 22.071 18.337 15.268 1.00 16.26 ? 3 G49 A "O3'" 1
HETATM 48 C "C2'" . G49 A 1 3 ? 19.690 18.363 14.568 1.00 15.75 ? 3 G49 A "C2'" 1
HETATM 49 C "C1'" . G49 A 1 3 ? 19.083 17.439 15.589 1.00 15.14 ? 3 G49 A "C1'" 1
HETATM 50 N N9 . G49 A 1 3 ? 17.662 17.219 15.352 1.00 14.55 ? 3 G49 A N9 1
HETATM 51 C C8 . G49 A 1 3 ? 16.702 18.224 15.310 1.00 14.27 ? 3 G49 A C8 1
HETATM 52 N N7 . G49 A 1 3 ? 15.493 17.784 15.094 1.00 13.83 ? 3 G49 A N7 1
HETATM 53 C C5 . G49 A 1 3 ? 15.665 16.402 15.031 1.00 13.87 ? 3 G49 A C5 1
HETATM 54 C C6 . G49 A 1 3 ? 14.699 15.377 14.842 1.00 13.83 ? 3 G49 A C6 1
HETATM 55 O O6 . G49 A 1 3 ? 13.462 15.527 14.705 1.00 13.83 ? 3 G49 A O6 1
HETATM 56 N N1 . G49 A 1 3 ? 15.230 14.126 14.842 1.00 13.69 ? 3 G49 A N1 1
HETATM 57 C C2 . G49 A 1 3 ? 16.541 13.872 14.973 1.00 13.71 ? 3 G49 A C2 1
HETATM 58 N N2 . G49 A 1 3 ? 16.897 12.578 14.936 1.00 14.19 ? 3 G49 A N2 1
HETATM 59 C CM2 . G49 A 1 3 ? 18.334 12.423 15.036 1.00 14.45 ? 3 G49 A CM2 1
HETATM 60 N N3 . G49 A 1 3 ? 17.515 14.784 15.184 1.00 14.07 ? 3 G49 A N3 1
HETATM 61 C C4 . G49 A 1 3 ? 16.973 16.038 15.194 1.00 13.96 ? 3 G49 A C4 1
ATOM 62 P P . DC A 1 4 ? 22.913 18.168 13.941 1.00 18.51 ? 4 DC A P 1
ATOM 63 O OP1 . DC A 1 4 ? 24.289 17.970 14.510 1.00 18.96 ? 4 DC A OP1 1
ATOM 64 O OP2 . DC A 1 4 ? 22.549 19.349 13.146 1.00 19.90 ? 4 DC A OP2 1
ATOM 65 O "O5'" . DC A 1 4 ? 22.441 16.818 13.246 1.00 16.24 ? 4 DC A "O5'" 1
ATOM 66 C "C5'" . DC A 1 4 ? 22.634 15.564 13.894 1.00 15.64 ? 4 DC A "C5'" 1
ATOM 67 C "C4'" . DC A 1 4 ? 21.927 14.547 13.051 1.00 15.69 ? 4 DC A "C4'" 1
ATOM 68 O "O4'" . DC A 1 4 ? 20.529 14.730 13.088 1.00 15.22 ? 4 DC A "O4'" 1
ATOM 69 C "C3'" . DC A 1 4 ? 22.297 14.589 11.555 1.00 15.84 ? 4 DC A "C3'" 1
ATOM 70 O "O3'" . DC A 1 4 ? 22.913 13.332 11.208 1.00 16.87 ? 4 DC A "O3'" 1
ATOM 71 C "C2'" . DC A 1 4 ? 20.984 14.843 10.839 1.00 15.51 ? 4 DC A "C2'" 1
ATOM 72 C "C1'" . DC A 1 4 ? 19.990 14.309 11.808 1.00 14.66 ? 4 DC A "C1'" 1
ATOM 73 N N1 . DC A 1 4 ? 18.696 14.962 11.703 1.00 14.11 ? 4 DC A N1 1
ATOM 74 C C2 . DC A 1 4 ? 17.600 14.126 11.708 1.00 13.66 ? 4 DC A C2 1
ATOM 75 O O2 . DC A 1 4 ? 17.733 12.903 11.761 1.00 13.77 ? 4 DC A O2 1
ATOM 76 N N3 . DC A 1 4 ? 16.391 14.730 11.634 1.00 13.55 ? 4 DC A N3 1
ATOM 77 C C4 . DC A 1 4 ? 16.247 16.075 11.592 1.00 13.29 ? 4 DC A C4 1
ATOM 78 N N4 . DC A 1 4 ? 15.013 16.544 11.534 1.00 13.39 ? 4 DC A N4 1
ATOM 79 C C5 . DC A 1 4 ? 17.385 16.919 11.571 1.00 13.44 ? 4 DC A C5 1
ATOM 80 C C6 . DC A 1 4 ? 18.583 16.326 11.634 1.00 13.71 ? 4 DC A C6 1
ATOM 81 P P . DC A 1 5 ? 23.978 13.276 9.959 1.00 21.06 ? 5 DC A P 1
ATOM 82 O OP1 . DC A 1 5 ? 24.797 12.123 10.312 1.00 21.58 ? 5 DC A OP1 1
ATOM 83 O OP2 . DC A 1 5 ? 24.311 14.699 9.585 1.00 21.75 ? 5 DC A OP2 1
ATOM 84 O "O5'" . DC A 1 5 ? 22.916 12.852 8.801 1.00 17.77 ? 5 DC A "O5'" 1
ATOM 85 C "C5'" . DC A 1 5 ? 22.379 11.524 8.811 1.00 17.07 ? 5 DC A "C5'" 1
ATOM 86 C "C4'" . DC A 1 5 ? 21.230 11.572 7.826 1.00 16.80 ? 5 DC A "C4'" 1
ATOM 87 O "O4'" . DC A 1 5 ? 20.196 12.383 8.421 1.00 16.35 ? 5 DC A "O4'" 1
ATOM 88 C "C3'" . DC A 1 5 ? 21.543 12.149 6.457 1.00 16.70 ? 5 DC A "C3'" 1
ATOM 89 O "O3'" . DC A 1 5 ? 20.956 11.355 5.425 1.00 17.70 ? 5 DC A "O3'" 1
ATOM 90 C "C2'" . DC A 1 5 ? 20.905 13.538 6.504 1.00 16.38 ? 5 DC A "C2'" 1
ATOM 91 C "C1'" . DC A 1 5 ? 19.676 13.182 7.394 1.00 15.69 ? 5 DC A "C1'" 1
ATOM 92 N N1 . DC A 1 5 ? 18.976 14.408 7.779 1.00 15.13 ? 5 DC A N1 1
ATOM 93 C C2 . DC A 1 5 ? 17.603 14.208 7.995 1.00 14.74 ? 5 DC A C2 1
ATOM 94 O O2 . DC A 1 5 ? 17.162 13.047 7.984 1.00 14.37 ? 5 DC A O2 1
ATOM 95 N N3 . DC A 1 5 ? 16.854 15.321 8.206 1.00 14.58 ? 5 DC A N3 1
ATOM 96 C C4 . DC A 1 5 ? 17.416 16.558 8.237 1.00 14.51 ? 5 DC A C4 1
ATOM 97 N N4 . DC A 1 5 ? 16.626 17.634 8.453 1.00 14.40 ? 5 DC A N4 1
ATOM 98 C C5 . DC A 1 5 ? 18.803 16.733 8.053 1.00 14.54 ? 5 DC A C5 1
ATOM 99 C C6 . DC A 1 5 ? 19.541 15.643 7.821 1.00 14.82 ? 5 DC A C6 1
ATOM 100 P P . DG A 1 6 ? 21.670 10.219 4.466 1.00 21.37 ? 6 DG A P 1
ATOM 101 O OP1 . DG A 1 6 ? 22.371 9.284 5.414 1.00 24.25 ? 6 DG A OP1 1
ATOM 102 O OP2 . DG A 1 6 ? 22.393 11.140 3.566 1.00 20.89 ? 6 DG A OP2 1
ATOM 103 O "O5'" . DG A 1 6 ? 20.442 9.448 3.818 1.00 17.86 ? 6 DG A "O5'" 1
ATOM 104 C "C5'" . DG A 1 6 ? 19.518 8.584 4.450 1.00 16.65 ? 6 DG A "C5'" 1
ATOM 105 C "C4'" . DG A 1 6 ? 18.527 8.070 3.439 1.00 16.30 ? 6 DG A "C4'" 1
ATOM 106 O "O4'" . DG A 1 6 ? 17.626 9.092 3.049 1.00 16.21 ? 6 DG A "O4'" 1
ATOM 107 C "C3'" . DG A 1 6 ? 19.114 7.561 2.117 1.00 16.06 ? 6 DG A "C3'" 1
ATOM 108 O "O3'" . DG A 1 6 ? 18.295 6.474 1.701 1.00 16.59 ? 6 DG A "O3'" 1
ATOM 109 C "C2'" . DG A 1 6 ? 19.083 8.810 1.238 1.00 15.54 ? 6 DG A "C2'" 1
ATOM 110 C "C1'" . DG A 1 6 ? 17.789 9.457 1.622 1.00 14.80 ? 6 DG A "C1'" 1
ATOM 111 N N9 . DG A 1 6 ? 17.758 10.917 1.559 1.00 13.80 ? 6 DG A N9 1
ATOM 112 C C8 . DG A 1 6 ? 18.815 11.784 1.627 1.00 13.52 ? 6 DG A C8 1
ATOM 113 N N7 . DG A 1 6 ? 18.464 13.036 1.606 1.00 13.37 ? 6 DG A N7 1
ATOM 114 C C5 . DG A 1 6 ? 17.094 13.004 1.585 1.00 13.03 ? 6 DG A C5 1
ATOM 115 C C6 . DG A 1 6 ? 16.131 14.067 1.601 1.00 12.93 ? 6 DG A C6 1
ATOM 116 O O6 . DG A 1 6 ? 16.408 15.261 1.633 1.00 12.86 ? 6 DG A O6 1
ATOM 117 N N1 . DG A 1 6 ? 14.829 13.640 1.564 1.00 12.70 ? 6 DG A N1 1
ATOM 118 C C2 . DG A 1 6 ? 14.487 12.321 1.522 1.00 12.53 ? 6 DG A C2 1
ATOM 119 N N2 . DG A 1 6 ? 13.191 12.055 1.490 1.00 12.15 ? 6 DG A N2 1
ATOM 120 N N3 . DG A 1 6 ? 15.355 11.290 1.506 1.00 12.62 ? 6 DG A N3 1
ATOM 121 C C4 . DG A 1 6 ? 16.628 11.714 1.554 1.00 13.25 ? 6 DG A C4 1
HETATM 122 C C1 . DM8 B 2 . ? 15.708 18.527 5.040 1.00 14.07 ? 7 DM8 A C1 1
HETATM 123 C C2 . DM8 B 2 . ? 16.860 19.306 5.003 1.00 14.27 ? 7 DM8 A C2 1
HETATM 124 C C3 . DM8 B 2 . ? 18.199 18.682 4.919 1.00 14.24 ? 7 DM8 A C3 1
HETATM 125 C C4 . DM8 B 2 . ? 18.241 17.210 4.882 1.00 14.15 ? 7 DM8 A C4 1
HETATM 126 C C5 . DM8 B 2 . ? 17.004 15.013 4.803 1.00 13.65 ? 7 DM8 A C5 1
HETATM 127 C C6 . DM8 B 2 . ? 15.705 12.886 4.808 1.00 13.46 ? 7 DM8 A C6 1
HETATM 128 C C7 . DM8 B 2 . ? 14.408 10.722 4.819 1.00 14.27 ? 7 DM8 A C7 1
HETATM 129 C C8 . DM8 B 2 . ? 13.058 10.106 4.766 1.00 14.27 ? 7 DM8 A C8 1
HETATM 130 C C9 . DM8 B 2 . ? 11.940 10.846 5.425 1.00 14.26 ? 7 DM8 A C9 1
HETATM 131 C C10 . DM8 B 2 . ? 11.863 12.327 4.877 1.00 13.96 ? 7 DM8 A C10 1
HETATM 132 C C11 . DM8 B 2 . ? 13.245 14.332 4.909 1.00 13.54 ? 7 DM8 A C11 1
HETATM 133 C C12 . DM8 B 2 . ? 14.473 16.504 4.956 1.00 13.64 ? 7 DM8 A C12 1
HETATM 134 C C13 . DM8 B 2 . ? 10.612 10.169 5.109 1.00 14.70 ? 7 DM8 A C13 1
HETATM 135 C C14 . DM8 B 2 . ? 10.259 9.236 5.941 1.00 15.03 ? 7 DM8 A C14 1
HETATM 136 C C15 . DM8 B 2 . ? 15.784 17.137 4.951 1.00 13.81 ? 7 DM8 A C15 1
HETATM 137 C C16 . DM8 B 2 . ? 17.001 16.501 4.872 1.00 13.96 ? 7 DM8 A C16 1
HETATM 138 C C17 . DM8 B 2 . ? 15.710 14.284 4.866 1.00 13.49 ? 7 DM8 A C17 1
HETATM 139 C C18 . DM8 B 2 . ? 14.434 15.066 4.930 1.00 13.53 ? 7 DM8 A C18 1
HETATM 140 C C19 . DM8 B 2 . ? 13.174 12.923 4.851 1.00 13.53 ? 7 DM8 A C19 1
HETATM 141 C C20 . DM8 B 2 . ? 14.411 12.281 4.819 1.00 13.79 ? 7 DM8 A C20 1
HETATM 142 C C21 . DM8 B 2 . ? 20.699 17.120 4.819 1.00 14.95 ? 7 DM8 A C21 1
HETATM 143 O O4 . DM8 B 2 . ? 19.394 16.583 4.840 1.00 14.57 ? 7 DM8 A O4 1
HETATM 144 O O5 . DM8 B 2 . ? 18.041 14.315 4.729 1.00 13.84 ? 7 DM8 A O5 1
HETATM 145 O O6 . DM8 B 2 . ? 16.798 12.120 4.777 1.00 13.49 ? 7 DM8 A O6 1
HETATM 146 O O7 . DM8 B 2 . ? 15.044 10.479 6.146 1.00 15.00 ? 7 DM8 A O7 1
HETATM 147 O O9 . DM8 B 2 . ? 12.044 10.880 6.873 1.00 14.46 ? 7 DM8 A O9 1
HETATM 148 O O11 . DM8 B 2 . ? 12.098 15.106 4.966 1.00 13.36 ? 7 DM8 A O11 1
HETATM 149 O O12 . DM8 B 2 . ? 13.473 17.239 5.009 1.00 13.71 ? 7 DM8 A O12 1
HETATM 150 O O13 . DM8 B 2 . ? 9.632 10.386 4.008 1.00 15.79 ? 7 DM8 A O13 1
HETATM 151 C "C1'" . DM8 B 2 . ? 15.934 9.380 6.294 1.00 16.08 ? 7 DM8 A "C1'" 1
HETATM 152 C "C2'" . DM8 B 2 . ? 16.716 9.561 7.637 1.00 16.18 ? 7 DM8 A "C2'" 1
HETATM 153 C "C3'" . DM8 B 2 . ? 15.829 9.335 8.822 1.00 16.07 ? 7 DM8 A "C3'" 1
HETATM 154 C "C4'" . DM8 B 2 . ? 15.047 7.971 8.759 1.00 16.02 ? 7 DM8 A "C4'" 1
HETATM 155 C "C5'" . DM8 B 2 . ? 14.146 8.025 7.463 1.00 16.06 ? 7 DM8 A "C5'" 1
HETATM 156 C "C6'" . DM8 B 2 . ? 13.377 6.700 7.284 1.00 16.22 ? 7 DM8 A "C6'" 1
HETATM 157 O "O5'" . DM8 B 2 . ? 15.078 8.152 6.294 1.00 15.88 ? 7 DM8 A "O5'" 1
HETATM 158 O "O4'" . DM8 B 2 . ? 14.157 7.886 9.922 1.00 16.02 ? 7 DM8 A "O4'" 1
HETATM 159 N "N3'" . DM8 B 2 . ? 16.623 9.341 10.186 1.00 15.52 ? 7 DM8 A "N3'" 1
HETATM 160 BR BR . DM8 B 2 . ? 18.241 8.561 7.626 1.00 18.57 ? 7 DM8 A BR 1
HETATM 161 O O . HOH C 3 . ? 17.626 6.807 11.097 1.00 22.35 ? 8 HOH A O 1
HETATM 162 O O . HOH C 3 . ? 20.029 9.287 12.129 1.00 55.73 ? 9 HOH A O 1
HETATM 163 O O . HOH C 3 . ? 20.490 18.939 11.113 1.00 29.16 ? 10 HOH A O 1
HETATM 164 O O . HOH C 3 . ? 15.021 4.822 10.360 1.00 33.86 ? 11 HOH A O 1
HETATM 165 O O . HOH C 3 . ? 18.978 11.135 10.291 1.00 19.20 ? 12 HOH A O 1
HETATM 166 O O . HOH C 3 . ? 10.128 24.760 22.349 1.00 33.65 ? 13 HOH A O 1
HETATM 167 O O . HOH C 3 . ? 18.521 20.015 8.516 1.00 32.82 ? 14 HOH A O 1
HETATM 168 O O . HOH C 3 . ? 22.509 16.222 7.663 1.00 33.78 ? 15 HOH A O 1
HETATM 169 O O . HOH C 3 . ? 8.724 18.604 19.841 1.00 41.10 ? 16 HOH A O 1
HETATM 170 O O . HOH C 3 . ? 7.179 20.294 19.642 1.00 47.79 ? 17 HOH A O 1
HETATM 171 O O . HOH C 3 . ? 14.352 8.567 1.517 1.00 29.52 ? 18 HOH A O 1
HETATM 172 O O . HOH C 3 . ? 9.332 12.021 1.922 1.00 22.76 ? 19 HOH A O 1
HETATM 173 O O . HOH C 3 . ? 20.481 14.934 2.333 1.00 24.49 ? 20 HOH A O 1
HETATM 174 O O . HOH C 3 . ? 8.221 13.330 25.345 1.00 40.79 ? 21 HOH A O 1
HETATM 175 O O . HOH C 3 . ? 21.038 23.641 15.208 1.00 46.91 ? 22 HOH A O 1
HETATM 176 O O . HOH C 3 . ? 6.112 12.733 0.911 1.00 38.61 ? 23 HOH A O 1
HETATM 177 O O . HOH C 3 . ? 18.733 16.676 1.369 1.00 36.56 ? 24 HOH A O 1
HETATM 178 O O . HOH C 3 . ? 12.101 9.700 0.922 1.00 42.39 ? 25 HOH A O 1
HETATM 179 O O . HOH C 3 . ? 13.158 19.361 14.685 1.00 37.09 ? 26 HOH A O 1
HETATM 180 O O . HOH C 3 . ? 10.804 21.303 12.345 1.00 48.09 ? 27 HOH A O 1
HETATM 181 O O . HOH C 3 . ? 14.773 19.608 11.460 1.00 29.27 ? 28 HOH A O 1
HETATM 182 O O . HOH C 3 . ? 17.657 23.071 12.630 1.00 52.69 ? 29 HOH A O 1
HETATM 183 O O . HOH C 3 . ? 22.049 18.176 9.275 1.00 45.55 ? 30 HOH A O 1
HETATM 184 O O . HOH C 3 . ? 8.837 16.296 18.150 1.00 46.43 ? 31 HOH A O 1
HETATM 185 O O . HOH C 3 . ? 11.407 21.999 19.862 1.00 34.41 ? 32 HOH A O 1
HETATM 186 O O . HOH C 3 . ? 15.631 2.621 6.683 1.00 52.85 ? 33 HOH A O 1
HETATM 187 O O . HOH C 3 . ? 9.442 22.607 20.328 1.00 45.97 ? 34 HOH A O 1
HETATM 188 O O . HOH C 3 . ? 22.433 19.755 6.641 1.00 40.41 ? 35 HOH A O 1
HETATM 189 O O . HOH C 3 . ? 6.755 15.658 20.573 1.00 55.75 ? 36 HOH A O 1
HETATM 190 O O . HOH C 3 . ? 22.168 7.619 8.956 1.00 46.69 ? 37 HOH A O 1
HETATM 191 O O . HOH C 3 . ? 9.686 6.166 3.655 1.00 52.17 ? 38 HOH A O 1
HETATM 192 O O . HOH C 3 . ? 14.815 6.090 3.260 1.00 35.22 ? 39 HOH A O 1
HETATM 193 O O . HOH C 3 . ? 26.453 16.543 13.097 1.00 42.44 ? 40 HOH A O 1
HETATM 194 O O . HOH C 3 . ? 4.175 10.911 -0.716 1.00 54.04 ? 41 HOH A O 1
HETATM 195 O O . HOH C 3 . ? 15.671 6.112 0.695 1.00 41.42 ? 42 HOH A O 1
HETATM 196 O O . HOH C 3 . ? 11.565 18.833 11.735 1.00 56.96 ? 43 HOH A O 1
HETATM 197 O O . HOH C 3 . ? 20.018 5.635 10.949 1.00 44.57 ? 44 HOH A O 1
HETATM 198 O O . HOH C 3 . ? 2.068 11.762 10.402 1.00 54.82 ? 45 HOH A O 1
HETATM 199 O O . HOH C 3 . ? 16.041 21.233 8.853 1.00 50.74 ? 46 HOH A O 1
HETATM 200 O O . HOH C 3 . ? 14.378 25.914 19.340 1.00 46.60 ? 47 HOH A O 1
HETATM 201 O O . HOH C 3 . ? 23.518 15.679 4.171 1.00 47.52 ? 48 HOH A O 1
HETATM 202 O O . HOH C 3 . ? 24.543 9.048 9.594 1.00 45.55 ? 49 HOH A O 1
HETATM 203 O O . HOH C 3 . ? 7.807 8.813 1.501 1.00 51.17 ? 50 HOH A O 1
#