data_276D
#
_entry.id 276D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 276D pdb_0000276d 10.2210/pdb276d/pdb
RCSB DDF066 ? ?
WWPDB D_1000177688 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1996-09-16
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 276D
_pdbx_database_status.recvd_initial_deposition_date 1996-07-22
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Gao, Y.-G.' 1
'Priebe, W.' 2
'Wang, A.H.-J.' 3
#
_citation.id primary
_citation.title
;Substitutions at C2' of daunosamine in the anticancer drug daunorubicin alter its DNA-binding sequence specificity.
;
_citation.journal_abbrev Eur.J.Biochem.
_citation.journal_volume 240
_citation.page_first 331
_citation.page_last 335
_citation.year 1996
_citation.journal_id_ASTM EJBCAI
_citation.country IX
_citation.journal_id_ISSN 0014-2956
_citation.journal_id_CSD 0262
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 8841395
_citation.pdbx_database_id_DOI 10.1111/j.1432-1033.1996.0331h.x
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Gao, Y.G.' 1 ?
primary 'Priebe, W.' 2 ?
primary 'Wang, A.H.' 3 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
;
1809.217 1 ? ? ? ?
2 non-polymer syn "2'-BROMO-4'-EPIDAUNORUBICIN" 606.416 1 ? ? ?
;2'-BROMO-4'-EPIDAUNORUBICIN IS A DAUNORUBICIN DERIVATIVE
WHICH HAS ALPHA-MANNO CONFIGURATION. IT HAS SIMILAR
ACTIVITY TO DAUNORUBICIN AND EXHIBITS PROMISING ACTIVITY
TOWARD MULTIDRUG RESISTANT CELLS.
;
3 water nat water 18.015 45 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGATCG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 "2'-BROMO-4'-EPIDAUNORUBICIN" DM8
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DA n
1 4 DT n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P'
331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P'
307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P'
347.221
DM8 non-polymer . "2'-BROMO-4'-EPIDAUNORUBICIN" 'WP401; DAUNOMYCIN DERIVATIVE; DAUNORUBICIN DERIVATIVE'
'C27 H28 Br N O10' 606.416
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P'
322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DA 3 3 3 DA A A . n
A 1 4 DT 4 4 4 DT T A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DM8 1 7 7 DM8 DM8 A .
C 3 HOH 1 8 8 HOH HOH A .
C 3 HOH 2 9 9 HOH HOH A .
C 3 HOH 3 10 10 HOH HOH A .
C 3 HOH 4 11 11 HOH HOH A .
C 3 HOH 5 12 12 HOH HOH A .
C 3 HOH 6 13 13 HOH HOH A .
C 3 HOH 7 14 14 HOH HOH A .
C 3 HOH 8 15 15 HOH HOH A .
C 3 HOH 9 16 16 HOH HOH A .
C 3 HOH 10 17 17 HOH HOH A .
C 3 HOH 11 18 18 HOH HOH A .
C 3 HOH 12 19 19 HOH HOH A .
C 3 HOH 13 20 20 HOH HOH A .
C 3 HOH 14 21 21 HOH HOH A .
C 3 HOH 15 22 22 HOH HOH A .
C 3 HOH 16 23 23 HOH HOH A .
C 3 HOH 17 24 24 HOH HOH A .
C 3 HOH 18 25 25 HOH HOH A .
C 3 HOH 19 26 26 HOH HOH A .
C 3 HOH 20 27 27 HOH HOH A .
C 3 HOH 21 28 28 HOH HOH A .
C 3 HOH 22 29 29 HOH HOH A .
C 3 HOH 23 30 30 HOH HOH A .
C 3 HOH 24 31 31 HOH HOH A .
C 3 HOH 25 32 32 HOH HOH A .
C 3 HOH 26 33 33 HOH HOH A .
C 3 HOH 27 34 34 HOH HOH A .
C 3 HOH 28 35 35 HOH HOH A .
C 3 HOH 29 36 36 HOH HOH A .
C 3 HOH 30 37 37 HOH HOH A .
C 3 HOH 31 38 38 HOH HOH A .
C 3 HOH 32 39 39 HOH HOH A .
C 3 HOH 33 40 40 HOH HOH A .
C 3 HOH 34 41 41 HOH HOH A .
C 3 HOH 35 42 42 HOH HOH A .
C 3 HOH 36 43 43 HOH HOH A .
C 3 HOH 37 44 44 HOH HOH A .
C 3 HOH 38 45 45 HOH HOH A .
C 3 HOH 39 46 46 HOH HOH A .
C 3 HOH 40 47 47 HOH HOH A .
C 3 HOH 41 48 48 HOH HOH A .
C 3 HOH 42 49 49 HOH HOH A .
C 3 HOH 43 50 50 HOH HOH A .
C 3 HOH 44 51 51 HOH HOH A .
C 3 HOH 45 52 52 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
MSC 'data collection' . ? 1
NUCLSQ refinement . ? 2
MSC 'data reduction' . ? 3
#
_cell.entry_id 276D
_cell.length_a 28.090
_cell.length_b 28.090
_cell.length_c 53.380
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 276D
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 92
#
_exptl.entry_id 276D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 55.86
_exptl_crystal.density_Matthews 2.79
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp 298.00
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH 6.00
_exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION, temperature 298.00K'
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 BACL2 ? ? ?
1 4 1 'NA CACODYLATE' ? ? ?
1 5 1 SPERMINE ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 293.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'RIGAKU RAXIS IIC'
_diffrn_detector.pdbx_collection_date 1995-07-12
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU RU200'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 276D
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high ?
_reflns.number_obs ?
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs 0.044
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 4.000
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 276D
_refine.ls_number_reflns_obs 1915
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 4.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 10.000
_refine.ls_d_res_high 1.800
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.207
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 39
_refine_hist.number_atoms_solvent 45
_refine_hist.number_atoms_total 204
_refine_hist.d_res_high 1.800
_refine_hist.d_res_low 10.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
n_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ?
n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 276D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 276D
_struct.title
;SUBSTITUTIONS AT C2' OF DAUNOSAMINE IN THE ANTICANCER DAUNORUBICIN ALTER ITS DNA-BINDING SEQUENCE SPECIFICITY
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 276D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 276D
_struct_ref.pdbx_db_accession 276D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 276D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 276D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.0900000000 -1.0000000000
0.0000000000 0.0000000000 28.0900000000 0.0000000000 0.0000000000 -1.0000000000 26.6900000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A DM8 7 ? 11 'BINDING SITE FOR RESIDUE DM8 A 7'
'DRUG BINDING SITE' ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 11 DC A 1 ? DC A 1 . ? 8_665 ?
2 AC1 11 DG A 2 ? DG A 2 . ? 8_665 ?
3 AC1 11 DA A 3 ? DA A 3 . ? 8_665 ?
4 AC1 11 DT A 4 ? DT A 4 . ? 8_665 ?
5 AC1 11 DC A 5 ? DC A 5 . ? 1_555 ?
6 AC1 11 DG A 6 ? DG A 6 . ? 1_555 ?
7 AC1 11 HOH C . ? HOH A 9 . ? 1_555 ?
8 AC1 11 HOH C . ? HOH A 19 . ? 1_555 ?
9 AC1 11 HOH C . ? HOH A 29 . ? 1_555 ?
10 AC1 11 HOH C . ? HOH A 34 . ? 1_555 ?
11 AC1 11 HOH C . ? HOH A 50 . ? 1_555 ?
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 OP1
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 DA
_pdbx_validate_close_contact.auth_seq_id_1 3
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 HOH
_pdbx_validate_close_contact.auth_seq_id_2 12
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.05
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.660 1.593 0.067 0.010 N
2 1 "O3'" A DA 3 ? ? P A DT 4 ? ? 1.690 1.607 0.083 0.012 Y
3 1 "O3'" A DT 4 ? ? P A DC 5 ? ? 1.704 1.607 0.097 0.012 Y
4 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.679 1.593 0.086 0.010 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 123.95 119.90 4.05 0.50 N
2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 118.36 121.90 -3.54 0.40 N
3 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 138.57 119.70 18.87 1.20 Y
4 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 97.58 102.40 -4.82 0.80 N
5 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 114.82 111.50 3.32 0.50 N
6 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.18 128.60 -4.42 0.60 N
7 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DA 3 ? ? 140.14 119.70 20.44 1.20 Y
8 1 "O5'" A DA 3 ? ? "C5'" A DA 3 ? ? "C4'" A DA 3 ? ? 103.46 109.40 -5.94 0.80 N
9 1 C6 A DA 3 ? ? N1 A DA 3 ? ? C2 A DA 3 ? ? 123.48 118.60 4.88 0.60 N
10 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 126.30 129.30 -3.00 0.50 N
11 1 C5 A DA 3 ? ? C6 A DA 3 ? ? N1 A DA 3 ? ? 112.58 117.70 -5.12 0.50 N
12 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 124.81 118.60 6.21 0.60 N
13 1 OP1 A DT 4 ? ? P A DT 4 ? ? OP2 A DT 4 ? ? 147.10 119.60 27.50 1.50 N
14 1 "O5'" A DT 4 ? ? P A DT 4 ? ? OP2 A DT 4 ? ? 97.08 105.70 -8.62 0.90 N
15 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 122.16 127.20 -5.04 0.60 N
16 1 N3 A DT 4 ? ? C4 A DT 4 ? ? C5 A DT 4 ? ? 120.18 115.20 4.98 0.60 N
17 1 N3 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 115.22 119.90 -4.68 0.60 N
18 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 119.72 108.30 11.42 0.30 N
19 1 OP1 A DG 6 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 134.67 119.60 15.07 1.50 N
20 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 100.34 104.50 -4.16 0.40 N
21 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 123.91 128.60 -4.69 0.60 N
#
_struct_site_keywords.site_id 'DRUG BINDING SITE'
_struct_site_keywords.text INTERCALATION
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DM8 C1 C Y N 108
DM8 C2 C Y N 109
DM8 C3 C Y N 110
DM8 C4 C Y N 111
DM8 C5 C N N 112
DM8 C6 C Y N 113
DM8 C7 C N S 114
DM8 C8 C N N 115
DM8 C9 C N S 116
DM8 C10 C N N 117
DM8 C11 C Y N 118
DM8 C12 C N N 119
DM8 C13 C N N 120
DM8 C14 C N N 121
DM8 C15 C Y N 122
DM8 C16 C Y N 123
DM8 C17 C Y N 124
DM8 C18 C Y N 125
DM8 C19 C Y N 126
DM8 C20 C Y N 127
DM8 C21 C N N 128
DM8 O4 O N N 129
DM8 O5 O N N 130
DM8 O6 O N N 131
DM8 O7 O N N 132
DM8 O9 O N N 133
DM8 O11 O N N 134
DM8 O12 O N N 135
DM8 O13 O N N 136
DM8 "C1'" C N R 137
DM8 "C2'" C N R 138
DM8 "C3'" C N R 139
DM8 "C4'" C N R 140
DM8 "C5'" C N S 141
DM8 "C6'" C N N 142
DM8 "O5'" O N N 143
DM8 "O4'" O N N 144
DM8 "N3'" N N N 145
DM8 BR BR N N 146
DM8 H1 H N N 147
DM8 H2 H N N 148
DM8 H3 H N N 149
DM8 H7 H N N 150
DM8 H81 H N N 151
DM8 H82 H N N 152
DM8 H101 H N N 153
DM8 H102 H N N 154
DM8 H141 H N N 155
DM8 H142 H N N 156
DM8 H143 H N N 157
DM8 H211 H N N 158
DM8 H212 H N N 159
DM8 H213 H N N 160
DM8 H6 H N N 161
DM8 H9 H N N 162
DM8 H11 H N N 163
DM8 "H1'" H N N 164
DM8 "H2'" H N N 165
DM8 "H3'" H N N 166
DM8 "H4'" H N N 167
DM8 "H5'" H N N 168
DM8 "H6'1" H N N 169
DM8 "H6'2" H N N 170
DM8 "H6'3" H N N 171
DM8 "HO4'" H N N 172
DM8 "HN'1" H N N 173
DM8 "HN'2" H N N 174
DT OP3 O N N 175
DT P P N N 176
DT OP1 O N N 177
DT OP2 O N N 178
DT "O5'" O N N 179
DT "C5'" C N N 180
DT "C4'" C N R 181
DT "O4'" O N N 182
DT "C3'" C N S 183
DT "O3'" O N N 184
DT "C2'" C N N 185
DT "C1'" C N R 186
DT N1 N N N 187
DT C2 C N N 188
DT O2 O N N 189
DT N3 N N N 190
DT C4 C N N 191
DT O4 O N N 192
DT C5 C N N 193
DT C7 C N N 194
DT C6 C N N 195
DT HOP3 H N N 196
DT HOP2 H N N 197
DT "H5'" H N N 198
DT "H5''" H N N 199
DT "H4'" H N N 200
DT "H3'" H N N 201
DT "HO3'" H N N 202
DT "H2'" H N N 203
DT "H2''" H N N 204
DT "H1'" H N N 205
DT H3 H N N 206
DT H71 H N N 207
DT H72 H N N 208
DT H73 H N N 209
DT H6 H N N 210
HOH O O N N 211
HOH H1 H N N 212
HOH H2 H N N 213
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DM8 C1 C2 doub Y N 113
DM8 C1 C15 sing Y N 114
DM8 C1 H1 sing N N 115
DM8 C2 C3 sing Y N 116
DM8 C2 H2 sing N N 117
DM8 C3 C4 doub Y N 118
DM8 C3 H3 sing N N 119
DM8 C4 C16 sing Y N 120
DM8 C4 O4 sing N N 121
DM8 C5 C16 sing N N 122
DM8 C5 C17 sing N N 123
DM8 C5 O5 doub N N 124
DM8 C6 C17 doub Y N 125
DM8 C6 C20 sing Y N 126
DM8 C6 O6 sing N N 127
DM8 C7 C8 sing N N 128
DM8 C7 C20 sing N N 129
DM8 C7 O7 sing N N 130
DM8 C7 H7 sing N N 131
DM8 C8 C9 sing N N 132
DM8 C8 H81 sing N N 133
DM8 C8 H82 sing N N 134
DM8 C9 C10 sing N N 135
DM8 C9 C13 sing N N 136
DM8 C9 O9 sing N N 137
DM8 C10 C19 sing N N 138
DM8 C10 H101 sing N N 139
DM8 C10 H102 sing N N 140
DM8 C11 C18 doub Y N 141
DM8 C11 C19 sing Y N 142
DM8 C11 O11 sing N N 143
DM8 C12 C15 sing N N 144
DM8 C12 C18 sing N N 145
DM8 C12 O12 doub N N 146
DM8 C13 C14 sing N N 147
DM8 C13 O13 doub N N 148
DM8 C14 H141 sing N N 149
DM8 C14 H142 sing N N 150
DM8 C14 H143 sing N N 151
DM8 C15 C16 doub Y N 152
DM8 C17 C18 sing Y N 153
DM8 C19 C20 doub Y N 154
DM8 C21 O4 sing N N 155
DM8 C21 H211 sing N N 156
DM8 C21 H212 sing N N 157
DM8 C21 H213 sing N N 158
DM8 O6 H6 sing N N 159
DM8 O7 "C1'" sing N N 160
DM8 O9 H9 sing N N 161
DM8 O11 H11 sing N N 162
DM8 "C1'" "C2'" sing N N 163
DM8 "C1'" "O5'" sing N N 164
DM8 "C1'" "H1'" sing N N 165
DM8 "C2'" "C3'" sing N N 166
DM8 "C2'" BR sing N N 167
DM8 "C2'" "H2'" sing N N 168
DM8 "C3'" "C4'" sing N N 169
DM8 "C3'" "N3'" sing N N 170
DM8 "C3'" "H3'" sing N N 171
DM8 "C4'" "C5'" sing N N 172
DM8 "C4'" "O4'" sing N N 173
DM8 "C4'" "H4'" sing N N 174
DM8 "C5'" "C6'" sing N N 175
DM8 "C5'" "O5'" sing N N 176
DM8 "C5'" "H5'" sing N N 177
DM8 "C6'" "H6'1" sing N N 178
DM8 "C6'" "H6'2" sing N N 179
DM8 "C6'" "H6'3" sing N N 180
DM8 "O4'" "HO4'" sing N N 181
DM8 "N3'" "HN'1" sing N N 182
DM8 "N3'" "HN'2" sing N N 183
DT OP3 P sing N N 184
DT OP3 HOP3 sing N N 185
DT P OP1 doub N N 186
DT P OP2 sing N N 187
DT P "O5'" sing N N 188
DT OP2 HOP2 sing N N 189
DT "O5'" "C5'" sing N N 190
DT "C5'" "C4'" sing N N 191
DT "C5'" "H5'" sing N N 192
DT "C5'" "H5''" sing N N 193
DT "C4'" "O4'" sing N N 194
DT "C4'" "C3'" sing N N 195
DT "C4'" "H4'" sing N N 196
DT "O4'" "C1'" sing N N 197
DT "C3'" "O3'" sing N N 198
DT "C3'" "C2'" sing N N 199
DT "C3'" "H3'" sing N N 200
DT "O3'" "HO3'" sing N N 201
DT "C2'" "C1'" sing N N 202
DT "C2'" "H2'" sing N N 203
DT "C2'" "H2''" sing N N 204
DT "C1'" N1 sing N N 205
DT "C1'" "H1'" sing N N 206
DT N1 C2 sing N N 207
DT N1 C6 sing N N 208
DT C2 O2 doub N N 209
DT C2 N3 sing N N 210
DT N3 C4 sing N N 211
DT N3 H3 sing N N 212
DT C4 O4 doub N N 213
DT C4 C5 sing N N 214
DT C5 C7 sing N N 215
DT C5 C6 doub N N 216
DT C7 H71 sing N N 217
DT C7 H72 sing N N 218
DT C7 H73 sing N N 219
DT C6 H6 sing N N 220
HOH O H1 sing N N 221
HOH O H2 sing N N 222
#
_ndb_struct_conf_na.entry_id 276D
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 8_665 0.219 -0.284 -0.089 5.845 1.810 -1.225 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 8_665 -0.267 -0.234 -0.191 -14.353 0.961 0.948 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DA 3 1_555 A DT 4 8_665 -0.056 -0.201 0.046 -8.830 -4.510 2.899 3 A_DA3:DT4_A A 3 ? A 4 ? 20 1
1 A DT 4 1_555 A DA 3 8_665 0.056 -0.201 0.046 8.830 -4.510 2.899 4 A_DT4:DA3_A A 4 ? A 3 ? 20 1
1 A DC 5 1_555 A DG 2 8_665 0.267 -0.234 -0.191 14.353 0.961 0.948 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 8_665 -0.219 -0.284 -0.089 -5.845 1.810 -1.225 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.145 0.962 7.010 0.118 -3.300 33.977 2.753 -1.912 6.892 -5.631 -0.202
34.132 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 8_665 A DA 3 1_555 A DT 4 8_665 -1.109 0.319 3.328 -4.917 0.744 32.574 0.431 1.082 3.460 1.317 8.703
32.942 2 AA_DG2DA3:DT4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DA 3 1_555 A DT 4 8_665 A DT 4 1_555 A DA 3 8_665 0.000 -0.454 3.034 0.000 2.104 30.446 -1.249 0.000 2.997 4.001 0.000
30.517 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DT 4 1_555 A DA 3 8_665 A DC 5 1_555 A DG 2 8_665 1.109 0.319 3.328 4.917 0.744 32.574 0.431 -1.082 3.460 1.317 -8.703
32.942 4 AA_DT4DC5:DG2DA3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.145 0.962 7.010 -0.118 -3.300 33.977 2.753 1.912 6.892 -5.631 0.202
34.132 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_atom_sites.entry_id 276D
_atom_sites.fract_transf_matrix[1][1] 0.035600
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.035600
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.018734
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
BR
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 9.508 20.322 22.856 1.00 24.54 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 9.927 21.317 23.822 1.00 23.85 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 11.393 21.072 24.158 1.00 23.70 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 11.536 19.966 25.017 1.00 22.87 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 12.295 20.789 22.920 1.00 23.65 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 13.407 21.682 22.957 1.00 24.80 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 12.733 19.351 23.048 1.00 23.05 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 12.570 19.095 24.585 1.00 21.94 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 12.146 17.710 24.766 1.00 20.94 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 13.134 16.735 24.900 1.00 20.14 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 14.309 17.106 24.905 1.00 20.11 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 12.722 15.452 24.969 1.00 19.73 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 11.432 15.078 24.980 1.00 19.38 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 11.064 13.797 25.065 1.00 19.25 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 10.441 16.078 24.836 1.00 19.94 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 10.851 17.345 24.718 1.00 20.23 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 13.929 22.954 22.183 1.00 29.87 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 14.786 23.727 23.122 1.00 29.45 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 12.800 23.572 21.425 1.00 29.91 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 15.011 22.230 21.153 1.00 26.14 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 16.047 21.291 21.495 1.00 24.85 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 16.353 20.483 20.272 1.00 24.61 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 15.491 19.339 20.230 1.00 23.92 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 16.185 21.162 18.900 1.00 24.56 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 17.342 20.952 18.110 1.00 26.10 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 14.969 20.483 18.271 1.00 23.72 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 15.196 19.106 18.836 1.00 22.66 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 14.025 18.272 18.714 1.00 21.22 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 12.710 18.629 18.730 1.00 20.89 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 11.927 17.623 18.543 1.00 20.72 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 12.764 16.516 18.441 1.00 20.21 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 12.519 15.123 18.313 1.00 19.82 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 11.373 14.612 18.228 1.00 20.15 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 13.632 14.345 18.324 1.00 19.28 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 14.868 14.842 18.463 1.00 18.99 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 15.859 13.957 18.409 1.00 19.13 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 15.185 16.123 18.612 1.00 19.70 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 14.084 16.907 18.586 1.00 20.34 ? 2 DG A C4 1
ATOM 39 P P . DA A 1 3 ? 18.381 21.780 17.176 1.00 34.00 ? 3 DA A P 1
ATOM 40 O OP1 . DA A 1 3 ? 19.064 22.648 18.265 1.00 34.32 ? 3 DA A OP1 1
ATOM 41 O OP2 . DA A 1 3 ? 17.637 22.261 16.013 1.00 32.94 ? 3 DA A OP2 1
ATOM 42 O "O5'" . DA A 1 3 ? 19.584 20.721 16.797 1.00 26.43 ? 3 DA A "O5'" 1
ATOM 43 C "C5'" . DA A 1 3 ? 20.336 19.935 17.753 1.00 24.85 ? 3 DA A "C5'" 1
ATOM 44 C "C4'" . DA A 1 3 ? 20.395 18.550 17.107 1.00 24.12 ? 3 DA A "C4'" 1
ATOM 45 O "O4'" . DA A 1 3 ? 19.134 17.907 17.208 1.00 23.40 ? 3 DA A "O4'" 1
ATOM 46 C "C3'" . DA A 1 3 ? 20.763 18.550 15.607 1.00 23.81 ? 3 DA A "C3'" 1
ATOM 47 O "O3'" . DA A 1 3 ? 22.013 17.893 15.415 1.00 24.81 ? 3 DA A "O3'" 1
ATOM 48 C "C2'" . DA A 1 3 ? 19.674 17.794 14.903 1.00 23.26 ? 3 DA A "C2'" 1
ATOM 49 C "C1'" . DA A 1 3 ? 19.005 17.056 16.023 1.00 22.09 ? 3 DA A "C1'" 1
ATOM 50 N N9 . DA A 1 3 ? 17.575 16.924 15.757 1.00 20.58 ? 3 DA A N9 1
ATOM 51 C C8 . DA A 1 3 ? 16.688 17.957 15.719 1.00 20.07 ? 3 DA A C8 1
ATOM 52 N N7 . DA A 1 3 ? 15.471 17.584 15.458 1.00 19.71 ? 3 DA A N7 1
ATOM 53 C C5 . DA A 1 3 ? 15.589 16.196 15.314 1.00 19.29 ? 3 DA A C5 1
ATOM 54 C C6 . DA A 1 3 ? 14.589 15.219 15.063 1.00 19.15 ? 3 DA A C6 1
ATOM 55 N N6 . DA A 1 3 ? 13.303 15.530 14.919 1.00 18.73 ? 3 DA A N6 1
ATOM 56 N N1 . DA A 1 3 ? 15.095 13.946 15.025 1.00 18.98 ? 3 DA A N1 1
ATOM 57 C C2 . DA A 1 3 ? 16.410 13.660 15.175 1.00 18.72 ? 3 DA A C2 1
ATOM 58 N N3 . DA A 1 3 ? 17.379 14.530 15.426 1.00 19.10 ? 3 DA A N3 1
ATOM 59 C C4 . DA A 1 3 ? 16.879 15.778 15.500 1.00 19.56 ? 3 DA A C4 1
ATOM 60 P P . DT A 1 4 ? 22.741 18.011 13.894 1.00 30.69 ? 4 DT A P 1
ATOM 61 O OP1 . DT A 1 4 ? 24.157 17.820 14.422 1.00 30.73 ? 4 DT A OP1 1
ATOM 62 O OP2 . DT A 1 4 ? 21.831 18.822 13.088 1.00 30.56 ? 4 DT A OP2 1
ATOM 63 O "O5'" . DT A 1 4 ? 22.336 16.570 13.264 1.00 25.29 ? 4 DT A "O5'" 1
ATOM 64 C "C5'" . DT A 1 4 ? 22.460 15.370 14.006 1.00 24.64 ? 4 DT A "C5'" 1
ATOM 65 C "C4'" . DT A 1 4 ? 21.867 14.269 13.130 1.00 24.39 ? 4 DT A "C4'" 1
ATOM 66 O "O4'" . DT A 1 4 ? 20.460 14.275 13.173 1.00 23.92 ? 4 DT A "O4'" 1
ATOM 67 C "C3'" . DT A 1 4 ? 22.230 14.292 11.625 1.00 24.24 ? 4 DT A "C3'" 1
ATOM 68 O "O3'" . DT A 1 4 ? 22.839 13.005 11.321 1.00 25.35 ? 4 DT A "O3'" 1
ATOM 69 C "C2'" . DT A 1 4 ? 20.915 14.564 10.915 1.00 23.66 ? 4 DT A "C2'" 1
ATOM 70 C "C1'" . DT A 1 4 ? 19.890 14.067 11.865 1.00 22.43 ? 4 DT A "C1'" 1
ATOM 71 N N1 . DT A 1 4 ? 18.629 14.837 11.855 1.00 21.39 ? 4 DT A N1 1
ATOM 72 C C2 . DT A 1 4 ? 17.491 14.050 11.871 1.00 20.53 ? 4 DT A C2 1
ATOM 73 O O2 . DT A 1 4 ? 17.584 12.809 11.844 1.00 20.97 ? 4 DT A O2 1
ATOM 74 N N3 . DT A 1 4 ? 16.311 14.674 11.801 1.00 20.26 ? 4 DT A N3 1
ATOM 75 C C4 . DT A 1 4 ? 16.205 16.011 11.860 1.00 19.91 ? 4 DT A C4 1
ATOM 76 O O4 . DT A 1 4 ? 15.036 16.452 11.881 1.00 19.81 ? 4 DT A O4 1
ATOM 77 C C5 . DT A 1 4 ? 17.365 16.814 11.892 1.00 20.17 ? 4 DT A C5 1
ATOM 78 C C7 . DT A 1 4 ? 17.219 18.322 11.930 1.00 20.14 ? 4 DT A C7 1
ATOM 79 C C6 . DT A 1 4 ? 18.550 16.202 11.887 1.00 20.59 ? 4 DT A C6 1
ATOM 80 P P . DC A 1 5 ? 23.805 12.879 9.923 1.00 30.27 ? 5 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? 24.735 11.797 10.323 1.00 31.26 ? 5 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? 24.109 14.325 9.720 1.00 30.83 ? 5 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? 22.541 12.418 8.919 1.00 26.03 ? 5 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? 21.966 11.059 8.978 1.00 24.89 ? 5 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? 20.814 11.061 7.980 1.00 24.44 ? 5 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 19.747 11.851 8.513 1.00 23.79 ? 5 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? 21.131 11.649 6.613 1.00 24.24 ? 5 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? 20.556 10.814 5.604 1.00 25.39 ? 5 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? 20.452 13.030 6.624 1.00 23.68 ? 5 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? 19.244 12.693 7.526 1.00 22.86 ? 5 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? 18.578 13.935 7.905 1.00 21.73 ? 5 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 17.213 13.775 8.102 1.00 20.93 ? 5 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 16.764 12.618 8.108 1.00 20.94 ? 5 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 16.474 14.890 8.311 1.00 20.43 ? 5 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 17.067 16.126 8.337 1.00 20.37 ? 5 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 16.292 17.188 8.545 1.00 20.04 ? 5 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? 18.463 16.289 8.161 1.00 20.67 ? 5 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? 19.185 15.165 7.926 1.00 21.19 ? 5 DC A C6 1
ATOM 99 P P . DG A 1 6 ? 21.485 9.941 4.526 1.00 29.19 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 22.067 8.840 5.450 1.00 29.88 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 22.067 11.078 3.752 1.00 26.31 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 20.216 9.202 3.790 1.00 24.34 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 19.179 8.432 4.420 1.00 22.47 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 18.241 7.817 3.437 1.00 21.95 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 17.219 8.668 2.984 1.00 21.35 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 18.792 7.306 2.092 1.00 21.42 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 17.966 6.202 1.751 1.00 22.34 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 18.662 8.466 1.158 1.00 20.87 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 17.339 9.050 1.607 1.00 19.89 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 17.359 10.533 1.553 1.00 18.64 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 18.443 11.359 1.569 1.00 18.10 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 18.143 12.609 1.585 1.00 17.94 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 16.735 12.612 1.580 1.00 17.54 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 15.814 13.691 1.569 1.00 17.31 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 16.151 14.898 1.575 1.00 17.72 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 14.516 13.309 1.543 1.00 17.12 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 14.129 12.005 1.537 1.00 16.87 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 12.834 11.750 1.500 1.00 16.89 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 14.960 10.966 1.548 1.00 17.40 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 16.249 11.354 1.537 1.00 17.78 ? 6 DG A C4 1
HETATM 121 C C1 . DM8 B 2 . ? 15.379 18.185 5.076 1.00 18.44 ? 7 DM8 A C1 1
HETATM 122 C C2 . DM8 B 2 . ? 16.499 18.977 5.103 1.00 18.60 ? 7 DM8 A C2 1
HETATM 123 C C3 . DM8 B 2 . ? 17.842 18.359 5.065 1.00 18.90 ? 7 DM8 A C3 1
HETATM 124 C C4 . DM8 B 2 . ? 17.904 16.896 4.969 1.00 18.65 ? 7 DM8 A C4 1
HETATM 125 C C5 . DM8 B 2 . ? 16.789 14.665 4.889 1.00 18.15 ? 7 DM8 A C5 1
HETATM 126 C C6 . DM8 B 2 . ? 15.491 12.539 4.852 1.00 18.41 ? 7 DM8 A C6 1
HETATM 127 C C7 . DM8 B 2 . ? 14.174 10.379 4.799 1.00 20.50 ? 7 DM8 A C7 1
HETATM 128 C C8 . DM8 B 2 . ? 12.814 9.817 4.750 1.00 20.33 ? 7 DM8 A C8 1
HETATM 129 C C9 . DM8 B 2 . ? 11.691 10.573 5.354 1.00 20.44 ? 7 DM8 A C9 1
HETATM 130 C C10 . DM8 B 2 . ? 11.626 12.064 4.836 1.00 19.62 ? 7 DM8 A C10 1
HETATM 131 C C11 . DM8 B 2 . ? 13.067 13.974 4.911 1.00 18.29 ? 7 DM8 A C11 1
HETATM 132 C C12 . DM8 B 2 . ? 14.233 16.140 5.007 1.00 17.95 ? 7 DM8 A C12 1
HETATM 133 C C13 . DM8 B 2 . ? 10.370 9.918 5.039 1.00 21.05 ? 7 DM8 A C13 1
HETATM 134 C C14 . DM8 B 2 . ? 10.087 8.901 5.823 1.00 21.57 ? 7 DM8 A C14 1
HETATM 135 C C15 . DM8 B 2 . ? 15.514 16.783 4.996 1.00 18.09 ? 7 DM8 A C15 1
HETATM 136 C C16 . DM8 B 2 . ? 16.710 16.168 4.948 1.00 18.31 ? 7 DM8 A C16 1
HETATM 137 C C17 . DM8 B 2 . ? 15.502 13.932 4.884 1.00 18.19 ? 7 DM8 A C17 1
HETATM 138 C C18 . DM8 B 2 . ? 14.230 14.696 4.905 1.00 18.04 ? 7 DM8 A C18 1
HETATM 139 C C19 . DM8 B 2 . ? 12.974 12.584 4.847 1.00 18.84 ? 7 DM8 A C19 1
HETATM 140 C C20 . DM8 B 2 . ? 14.213 11.946 4.825 1.00 19.15 ? 7 DM8 A C20 1
HETATM 141 C C21 . DM8 B 2 . ? 20.384 16.654 4.959 1.00 19.39 ? 7 DM8 A C21 1
HETATM 142 O O4 . DM8 B 2 . ? 19.064 16.249 4.921 1.00 19.23 ? 7 DM8 A O4 1
HETATM 143 O O5 . DM8 B 2 . ? 17.811 13.952 4.804 1.00 18.66 ? 7 DM8 A O5 1
HETATM 144 O O6 . DM8 B 2 . ? 16.578 11.837 4.836 1.00 18.97 ? 7 DM8 A O6 1
HETATM 145 O O7 . DM8 B 2 . ? 14.845 10.098 6.058 1.00 22.43 ? 7 DM8 A O7 1
HETATM 146 O O9 . DM8 B 2 . ? 11.741 10.637 6.811 1.00 20.58 ? 7 DM8 A O9 1
HETATM 147 O O11 . DM8 B 2 . ? 11.904 14.719 4.991 1.00 18.71 ? 7 DM8 A O11 1
HETATM 148 O O12 . DM8 B 2 . ? 13.221 16.823 5.028 1.00 18.27 ? 7 DM8 A O12 1
HETATM 149 O O13 . DM8 B 2 . ? 9.345 10.247 4.030 1.00 22.57 ? 7 DM8 A O13 1
HETATM 150 C "C1'" . DM8 B 2 . ? 15.674 9.000 6.213 1.00 25.08 ? 7 DM8 A "C1'" 1
HETATM 151 C "C2'" . DM8 B 2 . ? 16.317 9.050 7.675 1.00 25.67 ? 7 DM8 A "C2'" 1
HETATM 152 C "C3'" . DM8 B 2 . ? 15.202 8.803 8.652 1.00 26.20 ? 7 DM8 A "C3'" 1
HETATM 153 C "C4'" . DM8 B 2 . ? 14.505 7.413 8.439 1.00 25.99 ? 7 DM8 A "C4'" 1
HETATM 154 C "C5'" . DM8 B 2 . ? 13.761 7.483 7.051 1.00 25.82 ? 7 DM8 A "C5'" 1
HETATM 155 C "C6'" . DM8 B 2 . ? 13.134 6.168 6.555 1.00 25.66 ? 7 DM8 A "C6'" 1
HETATM 156 O "O5'" . DM8 B 2 . ? 14.825 7.764 6.021 1.00 25.32 ? 7 DM8 A "O5'" 1
HETATM 157 O "O4'" . DM8 B 2 . ? 13.553 7.182 9.560 1.00 26.34 ? 7 DM8 A "O4'" 1
HETATM 158 N "N3'" . DM8 B 2 . ? 15.640 8.814 10.141 1.00 25.96 ? 7 DM8 A "N3'" 1
HETATM 159 BR BR . DM8 B 2 . ? 17.862 8.047 7.574 1.00 28.76 ? 7 DM8 A BR 1
HETATM 160 O O . HOH C 3 . ? 19.803 8.469 11.108 1.00 43.78 ? 8 HOH A O 1
HETATM 161 O O . HOH C 3 . ? 17.688 10.609 10.195 1.00 31.83 ? 9 HOH A O 1
HETATM 162 O O . HOH C 3 . ? 20.923 18.435 10.670 1.00 38.79 ? 10 HOH A O 1
HETATM 163 O O . HOH C 3 . ? 20.432 21.199 13.061 1.00 36.10 ? 11 HOH A O 1
HETATM 164 O O . HOH C 3 . ? 19.460 22.531 20.276 1.00 45.47 ? 12 HOH A O 1
HETATM 165 O O . HOH C 3 . ? 17.957 19.606 8.316 1.00 36.28 ? 13 HOH A O 1
HETATM 166 O O . HOH C 3 . ? 22.508 18.766 7.184 1.00 54.14 ? 14 HOH A O 1
HETATM 167 O O . HOH C 3 . ? 14.662 21.151 7.403 1.00 53.98 ? 15 HOH A O 1
HETATM 168 O O . HOH C 3 . ? 21.038 24.629 16.095 1.00 69.34 ? 16 HOH A O 1
HETATM 169 O O . HOH C 3 . ? 19.811 14.435 2.370 1.00 34.71 ? 17 HOH A O 1
HETATM 170 O O . HOH C 3 . ? 13.696 8.222 1.414 1.00 49.33 ? 18 HOH A O 1
HETATM 171 O O . HOH C 3 . ? 9.283 11.823 1.841 1.00 34.41 ? 19 HOH A O 1
HETATM 172 O O . HOH C 3 . ? 8.451 12.760 24.996 1.00 36.66 ? 20 HOH A O 1
HETATM 173 O O . HOH C 3 . ? 13.500 18.747 12.052 1.00 37.09 ? 21 HOH A O 1
HETATM 174 O O . HOH C 3 . ? 12.653 18.670 14.791 1.00 38.15 ? 22 HOH A O 1
HETATM 175 O O . HOH C 3 . ? 13.095 19.342 8.423 1.00 40.95 ? 23 HOH A O 1
HETATM 176 O O . HOH C 3 . ? 15.546 25.555 18.901 1.00 47.40 ? 24 HOH A O 1
HETATM 177 O O . HOH C 3 . ? 17.735 22.216 -1.180 1.00 52.89 ? 25 HOH A O 1
HETATM 178 O O . HOH C 3 . ? 11.462 22.052 19.194 1.00 41.84 ? 26 HOH A O 1
HETATM 179 O O . HOH C 3 . ? 9.134 21.681 20.203 1.00 51.69 ? 27 HOH A O 1
HETATM 180 O O . HOH C 3 . ? 24.903 8.909 8.334 1.00 59.33 ? 28 HOH A O 1
HETATM 181 O O . HOH C 3 . ? 14.820 6.772 3.261 1.00 42.88 ? 29 HOH A O 1
HETATM 182 O O . HOH C 3 . ? 4.177 19.121 9.456 1.00 71.91 ? 30 HOH A O 1
HETATM 183 O O . HOH C 3 . ? 18.070 16.525 1.377 1.00 32.15 ? 31 HOH A O 1
HETATM 184 O O . HOH C 3 . ? 26.344 17.404 12.786 1.00 72.51 ? 32 HOH A O 1
HETATM 185 O O . HOH C 3 . ? 11.370 9.387 0.961 1.00 39.88 ? 33 HOH A O 1
HETATM 186 O O . HOH C 3 . ? 16.918 9.480 12.805 1.00 34.84 ? 34 HOH A O 1
HETATM 187 O O . HOH C 3 . ? 22.687 16.039 8.070 1.00 41.07 ? 35 HOH A O 1
HETATM 188 O O . HOH C 3 . ? 18.277 25.076 20.381 1.00 60.81 ? 36 HOH A O 1
HETATM 189 O O . HOH C 3 . ? 10.623 19.070 6.314 1.00 57.77 ? 37 HOH A O 1
HETATM 190 O O . HOH C 3 . ? 13.592 24.718 4.968 1.00 63.98 ? 38 HOH A O 1
HETATM 191 O O . HOH C 3 . ? 21.538 6.904 8.366 1.00 52.38 ? 39 HOH A O 1
HETATM 192 O O . HOH C 3 . ? -0.039 7.589 9.486 1.00 62.14 ? 40 HOH A O 1
HETATM 193 O O . HOH C 3 . ? 16.654 6.118 11.428 1.00 53.11 ? 41 HOH A O 1
HETATM 194 O O . HOH C 3 . ? 13.612 21.134 10.649 1.00 52.34 ? 42 HOH A O 1
HETATM 195 O O . HOH C 3 . ? 22.572 7.100 11.185 1.00 70.59 ? 43 HOH A O 1
HETATM 196 O O . HOH C 3 . ? 23.791 14.033 -0.902 1.00 56.66 ? 44 HOH A O 1
HETATM 197 O O . HOH C 3 . ? 17.055 25.620 7.406 1.00 62.88 ? 45 HOH A O 1
HETATM 198 O O . HOH C 3 . ? 14.162 21.538 14.631 1.00 51.44 ? 46 HOH A O 1
HETATM 199 O O . HOH C 3 . ? 8.842 19.491 10.408 1.00 56.81 ? 47 HOH A O 1
HETATM 200 O O . HOH C 3 . ? 19.606 21.350 10.798 1.00 47.95 ? 48 HOH A O 1
HETATM 201 O O . HOH C 3 . ? 10.666 25.561 22.490 1.00 53.93 ? 49 HOH A O 1
HETATM 202 O O . HOH C 3 . ? 6.651 9.385 2.770 1.00 47.37 ? 50 HOH A O 1
HETATM 203 O O . HOH C 3 . ? 23.685 14.014 2.973 1.00 55.30 ? 51 HOH A O 1
HETATM 204 O O . HOH C 3 . ? 5.280 11.195 0.642 1.00 55.78 ? 52 HOH A O 1
#