data_257D
#
_entry.id 257D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 257D pdb_0000257d 10.2210/pdb257d/pdb
RCSB ADF073 ? ?
WWPDB D_1000177667 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1996-04-15
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 257D
_pdbx_database_status.recvd_initial_deposition_date 1996-03-31
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Mooers, B.H.' 1
'Schroth, G.P.' 2
'Baxter, W.W.' 3
'Ho, P.S.' 4
#
_citation.id primary
_citation.title 'Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA.'
_citation.journal_abbrev J.Mol.Biol.
_citation.journal_volume 249
_citation.page_first 772
_citation.page_last 784
_citation.year 1995
_citation.journal_id_ASTM JMOBAK
_citation.country UK
_citation.journal_id_ISSN 0022-2836
_citation.journal_id_CSD 0070
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 7602589
_citation.pdbx_database_id_DOI 10.1006/jmbi.1995.0336
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Mooers, B.H.' 1 ?
primary 'Schroth, G.P.' 2 ?
primary 'Baxter, W.W.' 3 ?
primary 'Ho, P.S.' 4 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*CP*CP*GP*GP*C)-3')
;
1810.205 2 ? ? ? ?
2 water nat water 18.015 22 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DC)(DG)(DG)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GCCGGC
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DC n
1 3 DC n
1 4 DG n
1 5 DG n
1 6 DC n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 DC 2 2 2 DC C A . n
A 1 3 DC 3 3 3 DC C A . n
A 1 4 DG 4 4 4 DG G A . n
A 1 5 DG 5 5 5 DG G A . n
A 1 6 DC 6 6 6 DC C A . n
B 1 1 DG 1 7 7 DG G B . n
B 1 2 DC 2 8 8 DC C B . n
B 1 3 DC 3 9 9 DC C B . n
B 1 4 DG 4 10 10 DG G B . n
B 1 5 DG 5 11 11 DG G B . n
B 1 6 DC 6 12 12 DC C B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HOH 1 13 13 HOH HOH A .
C 2 HOH 2 14 14 HOH HOH A .
C 2 HOH 3 17 17 HOH HOH A .
C 2 HOH 4 18 18 HOH HOH A .
C 2 HOH 5 19 19 HOH HOH A .
C 2 HOH 6 21 21 HOH HOH A .
C 2 HOH 7 22 22 HOH HOH A .
C 2 HOH 8 23 23 HOH HOH A .
C 2 HOH 9 24 24 HOH HOH A .
C 2 HOH 10 26 26 HOH HOH A .
C 2 HOH 11 28 28 HOH HOH A .
C 2 HOH 12 32 32 HOH HOH A .
C 2 HOH 13 34 34 HOH HOH A .
D 2 HOH 1 15 15 HOH HOH B .
D 2 HOH 2 16 16 HOH HOH B .
D 2 HOH 3 20 20 HOH HOH B .
D 2 HOH 4 25 25 HOH HOH B .
D 2 HOH 5 27 27 HOH HOH B .
D 2 HOH 6 29 29 HOH HOH B .
D 2 HOH 7 30 30 HOH HOH B .
D 2 HOH 8 31 31 HOH HOH B .
D 2 HOH 9 33 33 HOH HOH B .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
X-PLOR refinement . ? 1
XSCANS 'data reduction' . ? 2
#
_cell.entry_id 257D
_cell.length_a 39.100
_cell.length_b 45.550
_cell.length_c 39.110
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 16
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 257D
_symmetry.space_group_name_H-M 'C 2 2 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 20
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 257D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 48.86
_exptl_crystal.density_Matthews 2.40
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 'NA CACODYLATE' ? ? ?
1 4 1 SPERMINE ? ? ?
1 5 1 MGCL2 ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.crystal_id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'SIEMENS P4'
_diffrn_detector.pdbx_collection_date 1994-03-01
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'SEALED TUBE'
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 257D
_reflns.observed_criterion_sigma_I 0.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 30.000
_reflns.d_resolution_high 2.100
_reflns.number_obs 1344
_reflns.number_all 1677
_reflns.percent_possible_obs 80.400
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 257D
_refine.ls_number_reflns_obs 929
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.000
_refine.ls_d_res_high 2.300
_refine.ls_percent_reflns_obs 78.800
_refine.ls_R_factor_obs 0.1640000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.1640000
_refine.ls_R_factor_R_free 0.1610000
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_overall_phase_error ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 257D
_refine_analyze.Luzzati_coordinate_error_obs 0.25
_refine_analyze.Luzzati_sigma_a_obs 0.30
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 240
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 22
_refine_hist.number_atoms_total 262
_refine_hist.d_res_high 2.300
_refine_hist.d_res_low 8.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.018 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 3.90 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d 34.3 ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d 1.52 ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 257D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 257D
_struct.title 'ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 257D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'A-DNA, DOUBLE HELIX, MODIFIED, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 2 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 257D
_struct_ref.pdbx_db_accession 257D
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 257D A 1 ? 6 ? 257D 1 ? 6 ? 1 6
2 1 257D B 1 ? 6 ? 257D 7 ? 12 ? 7 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 "O5'"
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 DG
_pdbx_validate_close_contact.auth_seq_id_1 4
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 HOH
_pdbx_validate_close_contact.auth_seq_id_2 28
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.19
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? 1.459 1.516 -0.057 0.008 N
2 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 1.455 1.516 -0.061 0.008 N
3 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.382 1.446 -0.064 0.010 N
4 1 "C3'" A DC 6 ? ? "C2'" A DC 6 ? ? 1.449 1.516 -0.067 0.008 N
5 1 "C3'" B DG 10 ? ? "C2'" B DG 10 ? ? 1.464 1.516 -0.052 0.008 N
6 1 "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? 1.466 1.516 -0.050 0.008 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C4'" A DG 1 ? ? "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? 97.70 102.20 -4.50 0.70 N
2 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 114.04 108.30 5.74 0.30 N
3 1 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.18 113.10 3.08 0.50 N
4 1 "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 97.86 102.20 -4.34 0.70 N
5 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 114.00 108.30 5.70 0.30 N
6 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 113.41 108.30 5.11 0.30 N
7 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.85 118.90 3.95 0.60 N
8 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 117.41 121.90 -4.49 0.70 N
9 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.90 104.50 -2.60 0.40 N
10 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.49 108.30 3.19 0.30 N
11 1 "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 100.47 104.50 -4.03 0.40 N
12 1 "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? "C2'" A DG 5 ? ? 97.94 102.20 -4.26 0.70 N
13 1 N3 A DG 5 ? ? C2 A DG 5 ? ? N2 A DG 5 ? ? 113.79 119.90 -6.11 0.70 N
14 1 "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? 99.34 104.50 -5.16 0.40 N
15 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 115.43 108.30 7.13 0.30 N
16 1 C2 A DC 6 ? ? N3 A DC 6 ? ? C4 A DC 6 ? ? 122.99 119.90 3.09 0.50 N
17 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 124.05 118.90 5.15 0.60 N
18 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.79 108.30 3.49 0.30 N
19 1 N7 B DG 7 ? ? C8 B DG 7 ? ? N9 B DG 7 ? ? 116.67 113.10 3.57 0.50 N
20 1 C8 B DG 7 ? ? N9 B DG 7 ? ? C4 B DG 7 ? ? 103.67 106.40 -2.73 0.40 N
21 1 N1 B DG 7 ? ? C6 B DG 7 ? ? O6 B DG 7 ? ? 115.13 119.90 -4.77 0.60 N
22 1 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 111.00 108.30 2.70 0.30 N
23 1 "C4'" B DC 9 ? ? "C3'" B DC 9 ? ? "C2'" B DC 9 ? ? 96.98 102.20 -5.22 0.70 N
24 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 113.51 108.30 5.21 0.30 N
25 1 "O4'" B DG 10 ? ? "C4'" B DG 10 ? ? "C3'" B DG 10 ? ? 99.94 104.50 -4.56 0.40 N
26 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 112.66 108.30 4.36 0.30 N
27 1 "C4'" B DG 11 ? ? "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? 97.19 102.20 -5.01 0.70 N
28 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 115.04 108.30 6.74 0.30 N
29 1 N1 B DG 11 ? ? C6 B DG 11 ? ? O6 B DG 11 ? ? 115.50 119.90 -4.40 0.60 N
30 1 "O4'" B DC 12 ? ? "C4'" B DC 12 ? ? "C3'" B DC 12 ? ? 101.25 104.50 -3.25 0.40 N
31 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 113.73 108.30 5.43 0.30 N
32 1 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 123.45 118.90 4.55 0.60 N
#
_pdbx_validate_planes.id 1
_pdbx_validate_planes.PDB_model_num 1
_pdbx_validate_planes.auth_comp_id DC
_pdbx_validate_planes.auth_asym_id B
_pdbx_validate_planes.auth_seq_id 8
_pdbx_validate_planes.PDB_ins_code ?
_pdbx_validate_planes.label_alt_id ?
_pdbx_validate_planes.rmsd 0.090
_pdbx_validate_planes.type 'SIDE CHAIN'
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DC OP3 O N N 1
DC P P N N 2
DC OP1 O N N 3
DC OP2 O N N 4
DC "O5'" O N N 5
DC "C5'" C N N 6
DC "C4'" C N R 7
DC "O4'" O N N 8
DC "C3'" C N S 9
DC "O3'" O N N 10
DC "C2'" C N N 11
DC "C1'" C N R 12
DC N1 N N N 13
DC C2 C N N 14
DC O2 O N N 15
DC N3 N N N 16
DC C4 C N N 17
DC N4 N N N 18
DC C5 C N N 19
DC C6 C N N 20
DC HOP3 H N N 21
DC HOP2 H N N 22
DC "H5'" H N N 23
DC "H5''" H N N 24
DC "H4'" H N N 25
DC "H3'" H N N 26
DC "HO3'" H N N 27
DC "H2'" H N N 28
DC "H2''" H N N 29
DC "H1'" H N N 30
DC H41 H N N 31
DC H42 H N N 32
DC H5 H N N 33
DC H6 H N N 34
DG OP3 O N N 35
DG P P N N 36
DG OP1 O N N 37
DG OP2 O N N 38
DG "O5'" O N N 39
DG "C5'" C N N 40
DG "C4'" C N R 41
DG "O4'" O N N 42
DG "C3'" C N S 43
DG "O3'" O N N 44
DG "C2'" C N N 45
DG "C1'" C N R 46
DG N9 N Y N 47
DG C8 C Y N 48
DG N7 N Y N 49
DG C5 C Y N 50
DG C6 C N N 51
DG O6 O N N 52
DG N1 N N N 53
DG C2 C N N 54
DG N2 N N N 55
DG N3 N N N 56
DG C4 C Y N 57
DG HOP3 H N N 58
DG HOP2 H N N 59
DG "H5'" H N N 60
DG "H5''" H N N 61
DG "H4'" H N N 62
DG "H3'" H N N 63
DG "HO3'" H N N 64
DG "H2'" H N N 65
DG "H2''" H N N 66
DG "H1'" H N N 67
DG H8 H N N 68
DG H1 H N N 69
DG H21 H N N 70
DG H22 H N N 71
HOH O O N N 72
HOH H1 H N N 73
HOH H2 H N N 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DC OP3 P sing N N 1
DC OP3 HOP3 sing N N 2
DC P OP1 doub N N 3
DC P OP2 sing N N 4
DC P "O5'" sing N N 5
DC OP2 HOP2 sing N N 6
DC "O5'" "C5'" sing N N 7
DC "C5'" "C4'" sing N N 8
DC "C5'" "H5'" sing N N 9
DC "C5'" "H5''" sing N N 10
DC "C4'" "O4'" sing N N 11
DC "C4'" "C3'" sing N N 12
DC "C4'" "H4'" sing N N 13
DC "O4'" "C1'" sing N N 14
DC "C3'" "O3'" sing N N 15
DC "C3'" "C2'" sing N N 16
DC "C3'" "H3'" sing N N 17
DC "O3'" "HO3'" sing N N 18
DC "C2'" "C1'" sing N N 19
DC "C2'" "H2'" sing N N 20
DC "C2'" "H2''" sing N N 21
DC "C1'" N1 sing N N 22
DC "C1'" "H1'" sing N N 23
DC N1 C2 sing N N 24
DC N1 C6 sing N N 25
DC C2 O2 doub N N 26
DC C2 N3 sing N N 27
DC N3 C4 doub N N 28
DC C4 N4 sing N N 29
DC C4 C5 sing N N 30
DC N4 H41 sing N N 31
DC N4 H42 sing N N 32
DC C5 C6 doub N N 33
DC C5 H5 sing N N 34
DC C6 H6 sing N N 35
DG OP3 P sing N N 36
DG OP3 HOP3 sing N N 37
DG P OP1 doub N N 38
DG P OP2 sing N N 39
DG P "O5'" sing N N 40
DG OP2 HOP2 sing N N 41
DG "O5'" "C5'" sing N N 42
DG "C5'" "C4'" sing N N 43
DG "C5'" "H5'" sing N N 44
DG "C5'" "H5''" sing N N 45
DG "C4'" "O4'" sing N N 46
DG "C4'" "C3'" sing N N 47
DG "C4'" "H4'" sing N N 48
DG "O4'" "C1'" sing N N 49
DG "C3'" "O3'" sing N N 50
DG "C3'" "C2'" sing N N 51
DG "C3'" "H3'" sing N N 52
DG "O3'" "HO3'" sing N N 53
DG "C2'" "C1'" sing N N 54
DG "C2'" "H2'" sing N N 55
DG "C2'" "H2''" sing N N 56
DG "C1'" N9 sing N N 57
DG "C1'" "H1'" sing N N 58
DG N9 C8 sing Y N 59
DG N9 C4 sing Y N 60
DG C8 N7 doub Y N 61
DG C8 H8 sing N N 62
DG N7 C5 sing Y N 63
DG C5 C6 sing N N 64
DG C5 C4 doub Y N 65
DG C6 O6 doub N N 66
DG C6 N1 sing N N 67
DG N1 C2 sing N N 68
DG N1 H1 sing N N 69
DG C2 N2 sing N N 70
DG C2 N3 doub N N 71
DG N2 H21 sing N N 72
DG N2 H22 sing N N 73
DG N3 C4 sing N N 74
HOH O H1 sing N N 75
HOH O H2 sing N N 76
#
_ndb_struct_conf_na.entry_id 257D
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 B DC 6 1_555 -0.619 0.077 -0.112 -3.741 1.402 3.415 1 A_DG1:DC12_B A 1 ? B 12 ? 19 1
1 A DC 2 1_555 B DG 5 1_555 0.096 -0.254 0.135 6.596 -13.242 -2.799 2 A_DC2:DG11_B A 2 ? B 11 ? 19 1
1 A DC 3 1_555 B DG 4 1_555 0.851 -0.133 0.406 6.129 -20.695 4.544 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1
1 A DG 4 1_555 B DC 3 1_555 -0.141 0.048 -0.366 -7.434 -10.612 6.220 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1
1 A DG 5 1_555 B DC 2 1_555 -0.522 -0.034 -0.128 -10.474 -12.508 4.743 5 A_DG5:DC8_B A 5 ? B 8 ? 19 1
1 A DC 6 1_555 B DG 1 1_555 0.619 -0.307 -0.078 3.681 0.982 -4.863 6 A_DC6:DG7_B A 6 ? B 7 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 B DC 6 1_555 A DC 2 1_555 B DG 5 1_555 -0.654 -1.480 3.147 -1.701 5.787 35.416 -3.172 0.835 2.904 9.429 2.771
35.910 1 AA_DG1DC2:DG11DC12_BB A 1 ? B 12 ? A 2 ? B 11 ?
1 A DC 2 1_555 B DG 5 1_555 A DC 3 1_555 B DG 4 1_555 0.398 -1.722 3.352 -0.817 8.770 32.511 -4.344 -0.815 2.795 15.317 1.427
33.651 2 AA_DC2DC3:DG10DG11_BB A 2 ? B 11 ? A 3 ? B 10 ?
1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.017 -1.719 3.512 3.690 16.858 24.897 -6.452 0.723 1.958 34.330 -7.516
30.215 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ?
1 A DG 4 1_555 B DC 3 1_555 A DG 5 1_555 B DC 2 1_555 0.010 -1.643 3.390 -0.669 11.767 25.663 -5.930 -0.166 2.416 24.888 1.416
28.199 4 AA_DG4DG5:DC8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ?
1 A DG 5 1_555 B DC 2 1_555 A DC 6 1_555 B DG 1 1_555 0.044 -1.219 2.985 -0.767 2.517 37.279 -2.202 -0.159 2.898 3.932 1.198
37.369 5 AA_DG5DC6:DG7DC8_BB A 5 ? B 8 ? A 6 ? B 7 ?
#
_atom_sites.entry_id 257D
_atom_sites.fract_transf_matrix[1][1] 0.025575
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.021954
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.025569
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 21.792 12.500 3.537 1.00 31.64 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 22.682 13.476 2.978 1.00 24.29 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 22.533 13.651 1.467 1.00 19.62 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 22.772 12.419 0.798 1.00 19.82 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 21.197 14.142 1.000 1.00 18.01 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 21.229 15.561 0.914 1.00 21.74 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 21.285 13.658 -0.398 1.00 21.16 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 21.918 12.304 -0.335 1.00 19.11 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 20.923 11.239 -0.225 1.00 18.27 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 20.584 10.519 0.876 1.00 21.99 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 19.642 9.626 0.714 1.00 22.92 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 19.323 9.766 -0.628 1.00 17.35 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 18.353 9.074 -1.376 1.00 15.43 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 17.559 8.210 -1.018 1.00 10.90 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 18.361 9.517 -2.696 1.00 18.37 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 19.178 10.492 -3.190 1.00 16.23 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 19.043 10.779 -4.471 1.00 9.48 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 20.093 11.170 -2.490 1.00 16.23 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 20.103 10.746 -1.219 1.00 16.41 ? 1 DG A C4 1
ATOM 20 P P . DC A 1 2 ? 19.941 16.527 0.714 1.00 25.42 ? 2 DC A P 1
ATOM 21 O OP1 . DC A 1 2 ? 20.416 17.911 0.774 1.00 25.56 ? 2 DC A OP1 1
ATOM 22 O OP2 . DC A 1 2 ? 18.846 16.040 1.595 1.00 26.20 ? 2 DC A OP2 1
ATOM 23 O "O5'" . DC A 1 2 ? 19.443 16.315 -0.763 1.00 20.99 ? 2 DC A "O5'" 1
ATOM 24 C "C5'" . DC A 1 2 ? 20.057 17.022 -1.840 1.00 16.49 ? 2 DC A "C5'" 1
ATOM 25 C "C4'" . DC A 1 2 ? 19.286 16.697 -3.059 1.00 16.89 ? 2 DC A "C4'" 1
ATOM 26 O "O4'" . DC A 1 2 ? 19.366 15.302 -3.244 1.00 17.78 ? 2 DC A "O4'" 1
ATOM 27 C "C3'" . DC A 1 2 ? 17.794 16.967 -2.919 1.00 17.27 ? 2 DC A "C3'" 1
ATOM 28 O "O3'" . DC A 1 2 ? 17.501 18.329 -3.190 1.00 22.90 ? 2 DC A "O3'" 1
ATOM 29 C "C2'" . DC A 1 2 ? 17.326 16.100 -4.028 1.00 15.99 ? 2 DC A "C2'" 1
ATOM 30 C "C1'" . DC A 1 2 ? 18.103 14.843 -3.777 1.00 14.55 ? 2 DC A "C1'" 1
ATOM 31 N N1 . DC A 1 2 ? 17.419 13.839 -2.927 1.00 12.04 ? 2 DC A N1 1
ATOM 32 C C2 . DC A 1 2 ? 16.514 12.989 -3.509 1.00 13.06 ? 2 DC A C2 1
ATOM 33 O O2 . DC A 1 2 ? 16.251 13.064 -4.711 1.00 10.93 ? 2 DC A O2 1
ATOM 34 N N3 . DC A 1 2 ? 15.884 12.063 -2.729 1.00 9.42 ? 2 DC A N3 1
ATOM 35 C C4 . DC A 1 2 ? 16.146 11.972 -1.407 1.00 10.45 ? 2 DC A C4 1
ATOM 36 N N4 . DC A 1 2 ? 15.575 10.986 -0.679 1.00 3.34 ? 2 DC A N4 1
ATOM 37 C C5 . DC A 1 2 ? 17.067 12.886 -0.780 1.00 12.58 ? 2 DC A C5 1
ATOM 38 C C6 . DC A 1 2 ? 17.664 13.777 -1.593 1.00 11.02 ? 2 DC A C6 1
ATOM 39 P P . DC A 1 3 ? 16.230 19.090 -2.571 1.00 25.15 ? 3 DC A P 1
ATOM 40 O OP1 . DC A 1 3 ? 16.304 20.500 -3.014 1.00 22.24 ? 3 DC A OP1 1
ATOM 41 O OP2 . DC A 1 3 ? 16.219 18.763 -1.123 1.00 28.89 ? 3 DC A OP2 1
ATOM 42 O "O5'" . DC A 1 3 ? 14.940 18.383 -3.245 1.00 22.52 ? 3 DC A "O5'" 1
ATOM 43 C "C5'" . DC A 1 3 ? 14.682 18.545 -4.670 1.00 23.39 ? 3 DC A "C5'" 1
ATOM 44 C "C4'" . DC A 1 3 ? 13.688 17.536 -5.275 1.00 20.31 ? 3 DC A "C4'" 1
ATOM 45 O "O4'" . DC A 1 3 ? 14.103 16.195 -5.041 1.00 21.42 ? 3 DC A "O4'" 1
ATOM 46 C "C3'" . DC A 1 3 ? 12.363 17.591 -4.636 1.00 18.05 ? 3 DC A "C3'" 1
ATOM 47 O "O3'" . DC A 1 3 ? 11.598 18.664 -5.141 1.00 19.90 ? 3 DC A "O3'" 1
ATOM 48 C "C2'" . DC A 1 3 ? 11.801 16.317 -5.070 1.00 17.49 ? 3 DC A "C2'" 1
ATOM 49 C "C1'" . DC A 1 3 ? 12.949 15.401 -4.784 1.00 19.08 ? 3 DC A "C1'" 1
ATOM 50 N N1 . DC A 1 3 ? 12.945 14.784 -3.428 1.00 16.63 ? 3 DC A N1 1
ATOM 51 C C2 . DC A 1 3 ? 12.173 13.673 -3.207 1.00 16.90 ? 3 DC A C2 1
ATOM 52 O O2 . DC A 1 3 ? 11.438 13.190 -4.066 1.00 20.03 ? 3 DC A O2 1
ATOM 53 N N3 . DC A 1 3 ? 12.197 13.074 -2.007 1.00 15.72 ? 3 DC A N3 1
ATOM 54 C C4 . DC A 1 3 ? 12.933 13.570 -1.028 1.00 18.99 ? 3 DC A C4 1
ATOM 55 N N4 . DC A 1 3 ? 12.830 12.978 0.161 1.00 23.18 ? 3 DC A N4 1
ATOM 56 C C5 . DC A 1 3 ? 13.751 14.721 -1.219 1.00 18.94 ? 3 DC A C5 1
ATOM 57 C C6 . DC A 1 3 ? 13.718 15.288 -2.436 1.00 17.69 ? 3 DC A C6 1
ATOM 58 P P . DG A 1 4 ? 10.610 19.440 -4.105 1.00 21.15 ? 4 DG A P 1
ATOM 59 O OP1 . DG A 1 4 ? 10.081 20.635 -4.787 1.00 24.66 ? 4 DG A OP1 1
ATOM 60 O OP2 . DG A 1 4 ? 11.276 19.573 -2.796 1.00 15.49 ? 4 DG A OP2 1
ATOM 61 O "O5'" . DG A 1 4 ? 9.461 18.343 -3.992 1.00 19.13 ? 4 DG A "O5'" 1
ATOM 62 C "C5'" . DG A 1 4 ? 8.517 18.214 -5.077 1.00 14.51 ? 4 DG A "C5'" 1
ATOM 63 C "C4'" . DG A 1 4 ? 7.496 17.186 -4.719 1.00 11.41 ? 4 DG A "C4'" 1
ATOM 64 O "O4'" . DG A 1 4 ? 8.255 16.057 -4.474 1.00 13.03 ? 4 DG A "O4'" 1
ATOM 65 C "C3'" . DG A 1 4 ? 6.808 17.401 -3.373 1.00 11.98 ? 4 DG A "C3'" 1
ATOM 66 O "O3'" . DG A 1 4 ? 5.654 18.206 -3.500 1.00 14.01 ? 4 DG A "O3'" 1
ATOM 67 C "C2'" . DG A 1 4 ? 6.322 16.054 -3.115 1.00 14.25 ? 4 DG A "C2'" 1
ATOM 68 C "C1'" . DG A 1 4 ? 7.538 15.295 -3.519 1.00 13.22 ? 4 DG A "C1'" 1
ATOM 69 N N9 . DG A 1 4 ? 8.334 15.032 -2.349 1.00 10.77 ? 4 DG A N9 1
ATOM 70 C C8 . DG A 1 4 ? 9.476 15.625 -1.909 1.00 11.30 ? 4 DG A C8 1
ATOM 71 N N7 . DG A 1 4 ? 9.984 15.039 -0.847 1.00 11.85 ? 4 DG A N7 1
ATOM 72 C C5 . DG A 1 4 ? 9.070 13.998 -0.583 1.00 8.25 ? 4 DG A C5 1
ATOM 73 C C6 . DG A 1 4 ? 9.053 12.981 0.419 1.00 10.11 ? 4 DG A C6 1
ATOM 74 O O6 . DG A 1 4 ? 9.855 12.731 1.316 1.00 15.45 ? 4 DG A O6 1
ATOM 75 N N1 . DG A 1 4 ? 7.937 12.144 0.300 1.00 3.27 ? 4 DG A N1 1
ATOM 76 C C2 . DG A 1 4 ? 6.999 12.261 -0.652 1.00 3.16 ? 4 DG A C2 1
ATOM 77 N N2 . DG A 1 4 ? 6.025 11.403 -0.630 1.00 3.14 ? 4 DG A N2 1
ATOM 78 N N3 . DG A 1 4 ? 6.980 13.161 -1.616 1.00 4.09 ? 4 DG A N3 1
ATOM 79 C C4 . DG A 1 4 ? 8.051 13.995 -1.502 1.00 7.59 ? 4 DG A C4 1
ATOM 80 P P . DG A 1 5 ? 5.020 19.004 -2.292 1.00 16.36 ? 5 DG A P 1
ATOM 81 O OP1 . DG A 1 5 ? 3.925 19.794 -2.898 1.00 14.36 ? 5 DG A OP1 1
ATOM 82 O OP2 . DG A 1 5 ? 6.083 19.685 -1.496 1.00 9.52 ? 5 DG A OP2 1
ATOM 83 O "O5'" . DG A 1 5 ? 4.367 17.813 -1.427 1.00 10.97 ? 5 DG A "O5'" 1
ATOM 84 C "C5'" . DG A 1 5 ? 3.066 17.343 -1.810 1.00 10.01 ? 5 DG A "C5'" 1
ATOM 85 C "C4'" . DG A 1 5 ? 2.634 16.222 -0.939 1.00 7.39 ? 5 DG A "C4'" 1
ATOM 86 O "O4'" . DG A 1 5 ? 3.793 15.408 -0.864 1.00 10.04 ? 5 DG A "O4'" 1
ATOM 87 C "C3'" . DG A 1 5 ? 2.431 16.540 0.509 1.00 4.74 ? 5 DG A "C3'" 1
ATOM 88 O "O3'" . DG A 1 5 ? 1.157 17.089 0.786 1.00 6.56 ? 5 DG A "O3'" 1
ATOM 89 C "C2'" . DG A 1 5 ? 2.471 15.150 1.032 1.00 2.31 ? 5 DG A "C2'" 1
ATOM 90 C "C1'" . DG A 1 5 ? 3.648 14.646 0.297 1.00 3.07 ? 5 DG A "C1'" 1
ATOM 91 N N9 . DG A 1 5 ? 4.825 14.856 1.072 1.00 3.47 ? 5 DG A N9 1
ATOM 92 C C8 . DG A 1 5 ? 5.906 15.690 0.918 1.00 8.13 ? 5 DG A C8 1
ATOM 93 N N7 . DG A 1 5 ? 6.883 15.453 1.776 1.00 8.41 ? 5 DG A N7 1
ATOM 94 C C5 . DG A 1 5 ? 6.370 14.378 2.541 1.00 7.18 ? 5 DG A C5 1
ATOM 95 C C6 . DG A 1 5 ? 6.925 13.610 3.625 1.00 9.46 ? 5 DG A C6 1
ATOM 96 O O6 . DG A 1 5 ? 7.986 13.707 4.228 1.00 12.70 ? 5 DG A O6 1
ATOM 97 N N1 . DG A 1 5 ? 6.059 12.611 4.039 1.00 5.17 ? 5 DG A N1 1
ATOM 98 C C2 . DG A 1 5 ? 4.820 12.399 3.517 1.00 6.99 ? 5 DG A C2 1
ATOM 99 N N2 . DG A 1 5 ? 4.094 11.414 3.968 1.00 4.75 ? 5 DG A N2 1
ATOM 100 N N3 . DG A 1 5 ? 4.249 13.079 2.563 1.00 7.94 ? 5 DG A N3 1
ATOM 101 C C4 . DG A 1 5 ? 5.104 14.041 2.117 1.00 6.28 ? 5 DG A C4 1
ATOM 102 P P . DC A 1 6 ? 0.975 18.356 1.814 1.00 14.36 ? 6 DC A P 1
ATOM 103 O OP1 . DC A 1 6 ? -0.193 19.158 1.344 1.00 9.88 ? 6 DC A OP1 1
ATOM 104 O OP2 . DC A 1 6 ? 2.259 19.052 2.094 1.00 15.11 ? 6 DC A OP2 1
ATOM 105 O "O5'" . DC A 1 6 ? 0.687 17.593 3.200 1.00 11.84 ? 6 DC A "O5'" 1
ATOM 106 C "C5'" . DC A 1 6 ? -0.482 16.877 3.594 1.00 13.98 ? 6 DC A "C5'" 1
ATOM 107 C "C4'" . DC A 1 6 ? -0.103 15.871 4.657 1.00 14.43 ? 6 DC A "C4'" 1
ATOM 108 O "O4'" . DC A 1 6 ? 1.103 15.266 4.192 1.00 15.49 ? 6 DC A "O4'" 1
ATOM 109 C "C3'" . DC A 1 6 ? 0.367 16.366 5.968 1.00 12.15 ? 6 DC A "C3'" 1
ATOM 110 O "O3'" . DC A 1 6 ? -0.678 16.687 6.846 1.00 21.52 ? 6 DC A "O3'" 1
ATOM 111 C "C2'" . DC A 1 6 ? 0.998 15.167 6.481 1.00 11.86 ? 6 DC A "C2'" 1
ATOM 112 C "C1'" . DC A 1 6 ? 1.790 14.735 5.311 1.00 8.41 ? 6 DC A "C1'" 1
ATOM 113 N N1 . DC A 1 6 ? 3.175 15.107 5.419 1.00 6.67 ? 6 DC A N1 1
ATOM 114 C C2 . DC A 1 6 ? 3.974 14.413 6.295 1.00 5.52 ? 6 DC A C2 1
ATOM 115 O O2 . DC A 1 6 ? 3.579 13.465 6.996 1.00 5.85 ? 6 DC A O2 1
ATOM 116 N N3 . DC A 1 6 ? 5.261 14.776 6.358 1.00 5.68 ? 6 DC A N3 1
ATOM 117 C C4 . DC A 1 6 ? 5.765 15.735 5.631 1.00 7.78 ? 6 DC A C4 1
ATOM 118 N N4 . DC A 1 6 ? 7.083 15.913 5.677 1.00 8.35 ? 6 DC A N4 1
ATOM 119 C C5 . DC A 1 6 ? 4.961 16.495 4.766 1.00 7.43 ? 6 DC A C5 1
ATOM 120 C C6 . DC A 1 6 ? 3.672 16.120 4.685 1.00 9.69 ? 6 DC A C6 1
ATOM 121 O "O5'" . DG B 1 1 ? 12.591 9.117 11.223 1.00 30.15 ? 7 DG B "O5'" 1
ATOM 122 C "C5'" . DG B 1 1 ? 12.096 8.549 12.439 1.00 20.13 ? 7 DG B "C5'" 1
ATOM 123 C "C4'" . DG B 1 1 ? 10.610 8.767 12.559 1.00 16.39 ? 7 DG B "C4'" 1
ATOM 124 O "O4'" . DG B 1 1 ? 10.251 10.140 12.714 1.00 18.57 ? 7 DG B "O4'" 1
ATOM 125 C "C3'" . DG B 1 1 ? 9.871 8.272 11.342 1.00 17.52 ? 7 DG B "C3'" 1
ATOM 126 O "O3'" . DG B 1 1 ? 9.728 6.860 11.395 1.00 17.58 ? 7 DG B "O3'" 1
ATOM 127 C "C2'" . DG B 1 1 ? 8.548 8.957 11.569 1.00 19.24 ? 7 DG B "C2'" 1
ATOM 128 C "C1'" . DG B 1 1 ? 8.964 10.359 12.041 1.00 15.86 ? 7 DG B "C1'" 1
ATOM 129 N N9 . DG B 1 1 ? 9.071 11.376 10.964 1.00 9.00 ? 7 DG B N9 1
ATOM 130 C C8 . DG B 1 1 ? 10.136 12.145 10.663 1.00 8.89 ? 7 DG B C8 1
ATOM 131 N N7 . DG B 1 1 ? 9.962 13.049 9.747 1.00 10.96 ? 7 DG B N7 1
ATOM 132 C C5 . DG B 1 1 ? 8.647 12.861 9.383 1.00 9.94 ? 7 DG B C5 1
ATOM 133 C C6 . DG B 1 1 ? 7.847 13.536 8.428 1.00 11.45 ? 7 DG B C6 1
ATOM 134 O O6 . DG B 1 1 ? 8.099 14.450 7.666 1.00 14.48 ? 7 DG B O6 1
ATOM 135 N N1 . DG B 1 1 ? 6.576 13.076 8.373 1.00 12.43 ? 7 DG B N1 1
ATOM 136 C C2 . DG B 1 1 ? 6.105 12.090 9.152 1.00 15.69 ? 7 DG B C2 1
ATOM 137 N N2 . DG B 1 1 ? 4.817 11.878 9.072 1.00 16.27 ? 7 DG B N2 1
ATOM 138 N N3 . DG B 1 1 ? 6.820 11.382 10.037 1.00 17.88 ? 7 DG B N3 1
ATOM 139 C C4 . DG B 1 1 ? 8.084 11.835 10.109 1.00 11.47 ? 7 DG B C4 1
ATOM 140 P P . DC B 1 2 ? 9.901 5.989 10.071 1.00 16.44 ? 8 DC B P 1
ATOM 141 O OP1 . DC B 1 2 ? 9.986 4.584 10.468 1.00 17.17 ? 8 DC B OP1 1
ATOM 142 O OP2 . DC B 1 2 ? 10.938 6.630 9.217 1.00 17.17 ? 8 DC B OP2 1
ATOM 143 O "O5'" . DC B 1 2 ? 8.500 6.215 9.386 1.00 14.57 ? 8 DC B "O5'" 1
ATOM 144 C "C5'" . DC B 1 2 ? 7.322 5.844 10.103 1.00 10.73 ? 8 DC B "C5'" 1
ATOM 145 C "C4'" . DC B 1 2 ? 6.096 6.365 9.386 1.00 13.19 ? 8 DC B "C4'" 1
ATOM 146 O "O4'" . DC B 1 2 ? 6.031 7.787 9.381 1.00 15.15 ? 8 DC B "O4'" 1
ATOM 147 C "C3'" . DC B 1 2 ? 6.165 6.009 7.952 1.00 11.73 ? 8 DC B "C3'" 1
ATOM 148 O "O3'" . DC B 1 2 ? 5.730 4.692 7.769 1.00 19.05 ? 8 DC B "O3'" 1
ATOM 149 C "C2'" . DC B 1 2 ? 5.240 6.990 7.355 1.00 11.32 ? 8 DC B "C2'" 1
ATOM 150 C "C1'" . DC B 1 2 ? 5.655 8.205 8.082 1.00 11.74 ? 8 DC B "C1'" 1
ATOM 151 N N1 . DC B 1 2 ? 6.717 8.994 7.457 1.00 9.77 ? 8 DC B N1 1
ATOM 152 C C2 . DC B 1 2 ? 6.339 9.961 6.614 1.00 11.78 ? 8 DC B C2 1
ATOM 153 O O2 . DC B 1 2 ? 5.169 10.062 6.248 1.00 13.52 ? 8 DC B O2 1
ATOM 154 N N3 . DC B 1 2 ? 7.261 10.832 6.170 1.00 7.64 ? 8 DC B N3 1
ATOM 155 C C4 . DC B 1 2 ? 8.518 10.739 6.537 1.00 10.15 ? 8 DC B C4 1
ATOM 156 N N4 . DC B 1 2 ? 9.362 11.714 6.169 1.00 14.60 ? 8 DC B N4 1
ATOM 157 C C5 . DC B 1 2 ? 8.959 9.670 7.341 1.00 9.63 ? 8 DC B C5 1
ATOM 158 C C6 . DC B 1 2 ? 8.010 8.843 7.786 1.00 11.22 ? 8 DC B C6 1
ATOM 159 P P . DC B 1 3 ? 6.342 3.813 6.592 1.00 20.02 ? 9 DC B P 1
ATOM 160 O OP1 . DC B 1 3 ? 5.626 2.516 6.588 1.00 23.95 ? 9 DC B OP1 1
ATOM 161 O OP2 . DC B 1 3 ? 7.815 3.838 6.606 1.00 17.93 ? 9 DC B OP2 1
ATOM 162 O "O5'" . DC B 1 3 ? 5.861 4.700 5.339 1.00 23.24 ? 9 DC B "O5'" 1
ATOM 163 C "C5'" . DC B 1 3 ? 4.513 4.521 4.847 1.00 23.25 ? 9 DC B "C5'" 1
ATOM 164 C "C4'" . DC B 1 3 ? 4.225 5.409 3.648 1.00 20.82 ? 9 DC B "C4'" 1
ATOM 165 O "O4'" . DC B 1 3 ? 4.412 6.786 3.990 1.00 23.95 ? 9 DC B "O4'" 1
ATOM 166 C "C3'" . DC B 1 3 ? 5.142 5.178 2.506 1.00 17.69 ? 9 DC B "C3'" 1
ATOM 167 O "O3'" . DC B 1 3 ? 4.774 4.026 1.759 1.00 23.20 ? 9 DC B "O3'" 1
ATOM 168 C "C2'" . DC B 1 3 ? 4.795 6.399 1.747 1.00 18.53 ? 9 DC B "C2'" 1
ATOM 169 C "C1'" . DC B 1 3 ? 4.790 7.456 2.798 1.00 18.21 ? 9 DC B "C1'" 1
ATOM 170 N N1 . DC B 1 3 ? 6.084 8.127 2.892 1.00 12.68 ? 9 DC B N1 1
ATOM 171 C C2 . DC B 1 3 ? 6.271 9.261 2.166 1.00 11.21 ? 9 DC B C2 1
ATOM 172 O O2 . DC B 1 3 ? 5.460 9.606 1.304 1.00 13.95 ? 9 DC B O2 1
ATOM 173 N N3 . DC B 1 3 ? 7.378 9.965 2.334 1.00 6.13 ? 9 DC B N3 1
ATOM 174 C C4 . DC B 1 3 ? 8.348 9.514 3.126 1.00 11.28 ? 9 DC B C4 1
ATOM 175 N N4 . DC B 1 3 ? 9.487 10.220 3.186 1.00 14.28 ? 9 DC B N4 1
ATOM 176 C C5 . DC B 1 3 ? 8.207 8.323 3.865 1.00 8.60 ? 9 DC B C5 1
ATOM 177 C C6 . DC B 1 3 ? 7.041 7.683 3.719 1.00 12.21 ? 9 DC B C6 1
ATOM 178 P P . DG B 1 4 ? 5.747 3.440 0.591 1.00 25.09 ? 10 DG B P 1
ATOM 179 O OP1 . DG B 1 4 ? 5.176 2.170 0.086 1.00 26.94 ? 10 DG B OP1 1
ATOM 180 O OP2 . DG B 1 4 ? 7.152 3.483 1.078 1.00 23.79 ? 10 DG B OP2 1
ATOM 181 O "O5'" . DG B 1 4 ? 5.694 4.549 -0.559 1.00 25.79 ? 10 DG B "O5'" 1
ATOM 182 C "C5'" . DG B 1 4 ? 4.712 4.665 -1.587 1.00 20.28 ? 10 DG B "C5'" 1
ATOM 183 C "C4'" . DG B 1 4 ? 5.144 5.769 -2.554 1.00 18.63 ? 10 DG B "C4'" 1
ATOM 184 O "O4'" . DG B 1 4 ? 5.329 6.961 -1.832 1.00 18.18 ? 10 DG B "O4'" 1
ATOM 185 C "C3'" . DG B 1 4 ? 6.532 5.609 -3.157 1.00 17.52 ? 10 DG B "C3'" 1
ATOM 186 O "O3'" . DG B 1 4 ? 6.614 4.640 -4.170 1.00 17.91 ? 10 DG B "O3'" 1
ATOM 187 C "C2'" . DG B 1 4 ? 6.680 6.948 -3.730 1.00 16.83 ? 10 DG B "C2'" 1
ATOM 188 C "C1'" . DG B 1 4 ? 6.276 7.750 -2.537 1.00 16.93 ? 10 DG B "C1'" 1
ATOM 189 N N9 . DG B 1 4 ? 7.462 8.038 -1.749 1.00 14.09 ? 10 DG B N9 1
ATOM 190 C C8 . DG B 1 4 ? 7.951 7.438 -0.636 1.00 15.32 ? 10 DG B C8 1
ATOM 191 N N7 . DG B 1 4 ? 9.073 7.955 -0.206 1.00 17.00 ? 10 DG B N7 1
ATOM 192 C C5 . DG B 1 4 ? 9.330 8.990 -1.134 1.00 20.47 ? 10 DG B C5 1
ATOM 193 C C6 . DG B 1 4 ? 10.403 9.973 -1.235 1.00 24.06 ? 10 DG B C6 1
ATOM 194 O O6 . DG B 1 4 ? 11.374 10.220 -0.510 1.00 27.62 ? 10 DG B O6 1
ATOM 195 N N1 . DG B 1 4 ? 10.227 10.804 -2.331 1.00 21.28 ? 10 DG B N1 1
ATOM 196 C C2 . DG B 1 4 ? 9.190 10.730 -3.180 1.00 18.38 ? 10 DG B C2 1
ATOM 197 N N2 . DG B 1 4 ? 9.157 11.604 -4.141 1.00 19.44 ? 10 DG B N2 1
ATOM 198 N N3 . DG B 1 4 ? 8.196 9.872 -3.122 1.00 20.53 ? 10 DG B N3 1
ATOM 199 C C4 . DG B 1 4 ? 8.334 9.035 -2.073 1.00 17.31 ? 10 DG B C4 1
ATOM 200 P P . DG B 1 5 ? 8.019 4.030 -4.607 1.00 21.43 ? 11 DG B P 1
ATOM 201 O OP1 . DG B 1 5 ? 7.690 2.846 -5.420 1.00 18.19 ? 11 DG B OP1 1
ATOM 202 O OP2 . DG B 1 5 ? 8.953 3.877 -3.457 1.00 21.70 ? 11 DG B OP2 1
ATOM 203 O "O5'" . DG B 1 5 ? 8.587 5.235 -5.498 1.00 16.80 ? 11 DG B "O5'" 1
ATOM 204 C "C5'" . DG B 1 5 ? 8.136 5.529 -6.826 1.00 16.51 ? 11 DG B "C5'" 1
ATOM 205 C "C4'" . DG B 1 5 ? 9.056 6.528 -7.452 1.00 13.44 ? 11 DG B "C4'" 1
ATOM 206 O "O4'" . DG B 1 5 ? 9.010 7.615 -6.574 1.00 14.46 ? 11 DG B "O4'" 1
ATOM 207 C "C3'" . DG B 1 5 ? 10.498 6.056 -7.388 1.00 12.70 ? 11 DG B "C3'" 1
ATOM 208 O "O3'" . DG B 1 5 ? 10.804 5.249 -8.504 1.00 15.21 ? 11 DG B "O3'" 1
ATOM 209 C "C2'" . DG B 1 5 ? 11.128 7.373 -7.516 1.00 14.79 ? 11 DG B "C2'" 1
ATOM 210 C "C1'" . DG B 1 5 ? 10.314 8.189 -6.550 1.00 11.81 ? 11 DG B "C1'" 1
ATOM 211 N N9 . DG B 1 5 ? 10.987 8.137 -5.259 1.00 9.91 ? 11 DG B N9 1
ATOM 212 C C8 . DG B 1 5 ? 10.811 7.306 -4.194 1.00 11.03 ? 11 DG B C8 1
ATOM 213 N N7 . DG B 1 5 ? 11.673 7.530 -3.211 1.00 10.38 ? 11 DG B N7 1
ATOM 214 C C5 . DG B 1 5 ? 12.440 8.621 -3.667 1.00 7.87 ? 11 DG B C5 1
ATOM 215 C C6 . DG B 1 5 ? 13.550 9.364 -3.072 1.00 10.31 ? 11 DG B C6 1
ATOM 216 O O6 . DG B 1 5 ? 14.155 9.205 -2.023 1.00 6.82 ? 11 DG B O6 1
ATOM 217 N N1 . DG B 1 5 ? 14.027 10.387 -3.891 1.00 9.50 ? 11 DG B N1 1
ATOM 218 C C2 . DG B 1 5 ? 13.513 10.674 -5.109 1.00 7.64 ? 11 DG B C2 1
ATOM 219 N N2 . DG B 1 5 ? 14.053 11.660 -5.788 1.00 4.71 ? 11 DG B N2 1
ATOM 220 N N3 . DG B 1 5 ? 12.503 10.025 -5.682 1.00 8.15 ? 11 DG B N3 1
ATOM 221 C C4 . DG B 1 5 ? 12.015 9.004 -4.911 1.00 8.12 ? 11 DG B C4 1
ATOM 222 P P . DC B 1 6 ? 12.165 4.419 -8.729 1.00 12.10 ? 12 DC B P 1
ATOM 223 O OP1 . DC B 1 6 ? 11.968 3.803 -10.044 1.00 19.66 ? 12 DC B OP1 1
ATOM 224 O OP2 . DC B 1 6 ? 12.496 3.546 -7.568 1.00 10.28 ? 12 DC B OP2 1
ATOM 225 O "O5'" . DC B 1 6 ? 13.301 5.581 -8.939 1.00 12.45 ? 12 DC B "O5'" 1
ATOM 226 C "C5'" . DC B 1 6 ? 13.693 6.083 -10.235 1.00 8.40 ? 12 DC B "C5'" 1
ATOM 227 C "C4'" . DC B 1 6 ? 14.874 6.981 -10.063 1.00 10.65 ? 12 DC B "C4'" 1
ATOM 228 O "O4'" . DC B 1 6 ? 14.552 7.800 -8.948 1.00 15.14 ? 12 DC B "O4'" 1
ATOM 229 C "C3'" . DC B 1 6 ? 16.137 6.354 -9.606 1.00 12.50 ? 12 DC B "C3'" 1
ATOM 230 O "O3'" . DC B 1 6 ? 16.896 5.729 -10.643 1.00 15.36 ? 12 DC B "O3'" 1
ATOM 231 C "C2'" . DC B 1 6 ? 16.806 7.526 -8.948 1.00 10.23 ? 12 DC B "C2'" 1
ATOM 232 C "C1'" . DC B 1 6 ? 15.696 8.138 -8.149 1.00 12.69 ? 12 DC B "C1'" 1
ATOM 233 N N1 . DC B 1 6 ? 15.558 7.758 -6.709 1.00 15.07 ? 12 DC B N1 1
ATOM 234 C C2 . DC B 1 6 ? 16.332 8.377 -5.745 1.00 11.21 ? 12 DC B C2 1
ATOM 235 O O2 . DC B 1 6 ? 17.059 9.344 -5.976 1.00 7.19 ? 12 DC B O2 1
ATOM 236 N N3 . DC B 1 6 ? 16.233 7.934 -4.481 1.00 10.33 ? 12 DC B N3 1
ATOM 237 C C4 . DC B 1 6 ? 15.408 6.957 -4.134 1.00 15.20 ? 12 DC B C4 1
ATOM 238 N N4 . DC B 1 6 ? 15.392 6.521 -2.859 1.00 18.10 ? 12 DC B N4 1
ATOM 239 C C5 . DC B 1 6 ? 14.552 6.367 -5.088 1.00 14.40 ? 12 DC B C5 1
ATOM 240 C C6 . DC B 1 6 ? 14.692 6.783 -6.347 1.00 12.47 ? 12 DC B C6 1
HETATM 241 O O . HOH C 2 . ? 8.244 18.460 0.187 1.00 9.92 ? 13 HOH A O 1
HETATM 242 O O . HOH C 2 . ? 21.336 14.031 -5.822 1.00 50.04 ? 14 HOH A O 1
HETATM 243 O O . HOH C 2 . ? 18.415 19.858 2.269 1.00 2.96 ? 17 HOH A O 1
HETATM 244 O O . HOH C 2 . ? 6.654 19.189 5.492 1.00 17.06 ? 18 HOH A O 1
HETATM 245 O O . HOH C 2 . ? 10.536 15.023 3.876 1.00 33.08 ? 19 HOH A O 1
HETATM 246 O O . HOH C 2 . ? 8.872 16.989 1.978 1.00 15.94 ? 21 HOH A O 1
HETATM 247 O O . HOH C 2 . ? 16.538 6.548 1.290 1.00 47.26 ? 22 HOH A O 1
HETATM 248 O O . HOH C 2 . ? 6.414 19.032 2.477 1.00 29.84 ? 23 HOH A O 1
HETATM 249 O O . HOH C 2 . ? 20.804 21.929 1.589 1.00 29.25 ? 24 HOH A O 1
HETATM 250 O O . HOH C 2 . ? 21.416 20.879 -1.208 1.00 56.70 ? 26 HOH A O 1
HETATM 251 O O . HOH C 2 . ? 8.413 19.319 -2.330 1.00 18.65 ? 28 HOH A O 1
HETATM 252 O O . HOH C 2 . ? 11.887 17.588 -0.085 1.00 55.01 ? 32 HOH A O 1
HETATM 253 O O . HOH C 2 . ? 11.596 22.287 -5.817 1.00 35.56 ? 34 HOH A O 1
HETATM 254 O O . HOH D 2 . ? 3.381 8.019 10.608 1.00 60.91 ? 15 HOH B O 1
HETATM 255 O O . HOH D 2 . ? 15.343 2.967 -12.193 1.00 8.06 ? 16 HOH B O 1
HETATM 256 O O . HOH D 2 . ? 2.166 11.450 9.748 1.00 75.15 ? 20 HOH B O 1
HETATM 257 O O . HOH D 2 . ? 15.527 4.576 -0.876 1.00 28.16 ? 25 HOH B O 1
HETATM 258 O O . HOH D 2 . ? 11.996 9.956 8.125 1.00 54.15 ? 27 HOH B O 1
HETATM 259 O O . HOH D 2 . ? 14.450 1.936 -5.882 1.00 64.03 ? 29 HOH B O 1
HETATM 260 O O . HOH D 2 . ? 12.466 6.513 -0.182 1.00 46.30 ? 30 HOH B O 1
HETATM 261 O O . HOH D 2 . ? 10.784 14.911 7.133 1.00 77.64 ? 31 HOH B O 1
HETATM 262 O O . HOH D 2 . ? 17.275 3.072 -10.083 1.00 43.53 ? 33 HOH B O 1
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