data_254D
#
_entry.id 254D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 254D pdb_0000254d 10.2210/pdb254d/pdb
RCSB ADFB62 ? ?
WWPDB D_1000177660 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1996-04-15
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 254D
_pdbx_database_status.recvd_initial_deposition_date 1995-09-29
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Mooers, B.H.' 1
'Schroth, G.P.' 2
'Baxter, W.W.' 3
'Ho, P.S.' 4
#
_citation.id primary
_citation.title 'Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA.'
_citation.journal_abbrev J.Mol.Biol.
_citation.journal_volume 249
_citation.page_first 772
_citation.page_last 784
_citation.year 1995
_citation.journal_id_ASTM JMOBAK
_citation.country UK
_citation.journal_id_ISSN 0022-2836
_citation.journal_id_CSD 0070
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 7602589
_citation.pdbx_database_id_DOI 10.1006/jmbi.1995.0336
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Mooers, B.H.' 1 ?
primary 'Schroth, G.P.' 2 ?
primary 'Baxter, W.W.' 3 ?
primary 'Ho, P.S.' 4 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*C)-3')
;
1838.259 2 ? ? ? ?
2 water nat water 18.015 34 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(5CM)(DG)(5CM)(DG)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GCGCGC
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 5CM n
1 3 DG n
1 4 5CM n
1 5 DG n
1 6 DC n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 5CM 2 2 2 5CM +C A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 5CM 4 4 4 5CM +C A . n
A 1 5 DG 5 5 5 DG G A . n
A 1 6 DC 6 6 6 DC C A . n
B 1 1 DG 1 7 7 DG G B . n
B 1 2 5CM 2 8 8 5CM +C B . n
B 1 3 DG 3 9 9 DG G B . n
B 1 4 5CM 4 10 10 5CM +C B . n
B 1 5 DG 5 11 11 DG G B . n
B 1 6 DC 6 12 12 DC C B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HOH 1 14 14 HOH HOH A .
C 2 HOH 2 15 15 HOH HOH A .
C 2 HOH 3 16 16 HOH HOH A .
C 2 HOH 4 20 20 HOH HOH A .
C 2 HOH 5 22 22 HOH HOH A .
C 2 HOH 6 23 23 HOH HOH A .
C 2 HOH 7 26 26 HOH HOH A .
C 2 HOH 8 27 27 HOH HOH A .
C 2 HOH 9 31 31 HOH HOH A .
C 2 HOH 10 32 32 HOH HOH A .
C 2 HOH 11 33 33 HOH HOH A .
C 2 HOH 12 36 36 HOH HOH A .
C 2 HOH 13 38 38 HOH HOH A .
C 2 HOH 14 39 39 HOH HOH A .
C 2 HOH 15 40 40 HOH HOH A .
C 2 HOH 16 41 41 HOH HOH A .
C 2 HOH 17 42 42 HOH HOH A .
C 2 HOH 18 43 43 HOH HOH A .
C 2 HOH 19 44 44 HOH HOH A .
C 2 HOH 20 45 45 HOH HOH A .
C 2 HOH 21 46 46 HOH HOH A .
D 2 HOH 1 13 13 HOH HOH B .
D 2 HOH 2 17 17 HOH HOH B .
D 2 HOH 3 18 18 HOH HOH B .
D 2 HOH 4 19 19 HOH HOH B .
D 2 HOH 5 21 21 HOH HOH B .
D 2 HOH 6 24 24 HOH HOH B .
D 2 HOH 7 25 25 HOH HOH B .
D 2 HOH 8 28 28 HOH HOH B .
D 2 HOH 9 29 29 HOH HOH B .
D 2 HOH 10 30 30 HOH HOH B .
D 2 HOH 11 34 34 HOH HOH B .
D 2 HOH 12 35 35 HOH HOH B .
D 2 HOH 13 37 37 HOH HOH B .
#
_software.name X-PLOR
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 254D
_cell.length_a 39.670
_cell.length_b 45.980
_cell.length_c 39.960
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 16
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 254D
_symmetry.space_group_name_H-M 'C 2 2 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 20
#
_exptl.entry_id 254D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.48
_exptl_crystal.density_percent_sol 50.37
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 'NA CACODYLATE' ? ? ?
1 4 1 SPERMINE ? ? ?
1 5 1 MGCL2 ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 298.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type RIGAKU
_diffrn_detector.pdbx_collection_date 1992-01-01
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 254D
_reflns.observed_criterion_sigma_I 2.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 32.000
_reflns.d_resolution_high 1.900
_reflns.number_obs 2937
_reflns.number_all 2937
_reflns.percent_possible_obs 68.300
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 254D
_refine.ls_number_reflns_obs 1994
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.000
_refine.ls_d_res_high 1.900
_refine.ls_percent_reflns_obs 76.900
_refine.ls_R_factor_obs 0.197
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.197
_refine.ls_R_factor_R_free 0.186
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean 20.20
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 240
_refine_hist.pdbx_number_atoms_ligand 4
_refine_hist.number_atoms_solvent 34
_refine_hist.number_atoms_total 278
_refine_hist.d_res_high 1.900
_refine_hist.d_res_low 8.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 3.58 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d 34.3 ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d 1.84 ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 254D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 254D
_struct.title 'ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 254D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'A-DNA, DOUBLE HELIX, MODIFIED, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 2 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 254D
_struct_ref.pdbx_db_accession 254D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 254D A 1 ? 6 ? 254D 1 ? 6 ? 1 6
2 1 254D B 1 ? 6 ? 254D 7 ? 12 ? 7 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A 5CM 2 P ? ? A DG 1 A 5CM 2 1_555 ? ? ? ? ? ? ? 1.598 ? ?
covale2 covale both ? A 5CM 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A 5CM 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.589 ? ?
covale3 covale both ? A DG 3 "O3'" ? ? ? 1_555 A 5CM 4 P ? ? A DG 3 A 5CM 4 1_555 ? ? ? ? ? ? ? 1.609 ? ?
covale4 covale both ? A 5CM 4 "O3'" ? ? ? 1_555 A DG 5 P ? ? A 5CM 4 A DG 5 1_555 ? ? ? ? ? ? ? 1.647 ? ?
covale5 covale both ? B DG 1 "O3'" ? ? ? 1_555 B 5CM 2 P ? ? B DG 7 B 5CM 8 1_555 ? ? ? ? ? ? ? 1.581 ? ?
covale6 covale both ? B 5CM 2 "O3'" ? ? ? 1_555 B DG 3 P ? ? B 5CM 8 B DG 9 1_555 ? ? ? ? ? ? ? 1.627 ? ?
covale7 covale both ? B DG 3 "O3'" ? ? ? 1_555 B 5CM 4 P ? ? B DG 9 B 5CM 10 1_555 ? ? ? ? ? ? ? 1.603 ? ?
covale8 covale both ? B 5CM 4 "O3'" ? ? ? 1_555 B DG 5 P ? ? B 5CM 10 B DG 11 1_555 ? ? ? ? ? ? ? 1.591 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A 5CM 2 N3 ? ? ? 1_555 B DG 5 N1 ? ? A 5CM 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A 5CM 2 N4 ? ? ? 1_555 B DG 5 O6 ? ? A 5CM 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A 5CM 2 O2 ? ? ? 1_555 B DG 5 N2 ? ? A 5CM 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B 5CM 4 N3 ? ? A DG 3 B 5CM 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B 5CM 4 O2 ? ? A DG 3 B 5CM 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B 5CM 4 N4 ? ? A DG 3 B 5CM 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A 5CM 4 N3 ? ? ? 1_555 B DG 3 N1 ? ? A 5CM 4 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A 5CM 4 N4 ? ? ? 1_555 B DG 3 O6 ? ? A 5CM 4 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A 5CM 4 O2 ? ? ? 1_555 B DG 3 N2 ? ? A 5CM 4 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B 5CM 2 N3 ? ? A DG 5 B 5CM 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B 5CM 2 O2 ? ? A DG 5 B 5CM 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B 5CM 2 N4 ? ? A DG 5 B 5CM 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 O A HOH 39 ? ? O A HOH 45 ? ? 2.16
2 1 O A HOH 27 ? ? O A HOH 46 ? ? 2.18
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 O
_pdbx_validate_symm_contact.auth_asym_id_1 A
_pdbx_validate_symm_contact.auth_comp_id_1 HOH
_pdbx_validate_symm_contact.auth_seq_id_1 44
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 O
_pdbx_validate_symm_contact.auth_asym_id_2 B
_pdbx_validate_symm_contact.auth_comp_id_2 HOH
_pdbx_validate_symm_contact.auth_seq_id_2 37
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 6_555
_pdbx_validate_symm_contact.dist 2.14
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.39 113.10 3.29 0.50 N
2 1 "C1'" A DG 5 ? ? "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? 103.28 110.10 -6.82 1.00 N
3 1 "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? "C2'" A DG 5 ? ? 97.96 102.20 -4.24 0.70 N
4 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.13 108.30 2.83 0.30 N
5 1 "O5'" B DG 9 ? ? "C5'" B DG 9 ? ? "C4'" B DG 9 ? ? 100.25 109.40 -9.15 0.80 N
6 1 "O4'" B DG 9 ? ? "C4'" B DG 9 ? ? "C3'" B DG 9 ? ? 110.19 106.00 4.19 0.60 N
7 1 "C4'" B DG 9 ? ? "C3'" B DG 9 ? ? "C2'" B DG 9 ? ? 95.85 102.20 -6.35 0.70 N
8 1 "C4'" B DG 11 ? ? "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? 96.37 102.20 -5.83 0.70 N
9 1 C5 B DG 11 ? ? N7 B DG 11 ? ? C8 B DG 11 ? ? 100.81 104.30 -3.49 0.50 N
10 1 N7 B DG 11 ? ? C8 B DG 11 ? ? N9 B DG 11 ? ? 116.59 113.10 3.49 0.50 N
11 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 115.18 108.30 6.88 0.30 N
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DG A 3 ? ? 0.065 'SIDE CHAIN'
2 1 DG A 5 ? ? 0.089 'SIDE CHAIN'
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A 5CM 2 A 5CM 2 ? DC ?
2 A 5CM 4 A 5CM 4 ? DC ?
3 B 5CM 2 B 5CM 8 ? DC ?
4 B 5CM 4 B 5CM 10 ? DC ?
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 33 ? C HOH .
2 1 A HOH 43 ? C HOH .
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
5CM N1 N N N 1
5CM C2 C N N 2
5CM N3 N N N 3
5CM C4 C N N 4
5CM C5 C N N 5
5CM C5A C N N 6
5CM C6 C N N 7
5CM O2 O N N 8
5CM N4 N N N 9
5CM "C1'" C N R 10
5CM "C2'" C N N 11
5CM "C3'" C N S 12
5CM "C4'" C N R 13
5CM "O4'" O N N 14
5CM "O3'" O N N 15
5CM "C5'" C N N 16
5CM "O5'" O N N 17
5CM P P N N 18
5CM OP1 O N N 19
5CM OP2 O N N 20
5CM OP3 O N N 21
5CM H5A1 H N N 22
5CM H5A2 H N N 23
5CM H5A3 H N N 24
5CM H6 H N N 25
5CM HN41 H N N 26
5CM HN42 H N N 27
5CM "H1'" H N N 28
5CM "H2'" H N N 29
5CM "H2''" H N N 30
5CM "H3'" H N N 31
5CM "H4'" H N N 32
5CM "HO3'" H N N 33
5CM "H5'" H N N 34
5CM "H5''" H N N 35
5CM HOP2 H N N 36
5CM HOP3 H N N 37
DC OP3 O N N 38
DC P P N N 39
DC OP1 O N N 40
DC OP2 O N N 41
DC "O5'" O N N 42
DC "C5'" C N N 43
DC "C4'" C N R 44
DC "O4'" O N N 45
DC "C3'" C N S 46
DC "O3'" O N N 47
DC "C2'" C N N 48
DC "C1'" C N R 49
DC N1 N N N 50
DC C2 C N N 51
DC O2 O N N 52
DC N3 N N N 53
DC C4 C N N 54
DC N4 N N N 55
DC C5 C N N 56
DC C6 C N N 57
DC HOP3 H N N 58
DC HOP2 H N N 59
DC "H5'" H N N 60
DC "H5''" H N N 61
DC "H4'" H N N 62
DC "H3'" H N N 63
DC "HO3'" H N N 64
DC "H2'" H N N 65
DC "H2''" H N N 66
DC "H1'" H N N 67
DC H41 H N N 68
DC H42 H N N 69
DC H5 H N N 70
DC H6 H N N 71
DG OP3 O N N 72
DG P P N N 73
DG OP1 O N N 74
DG OP2 O N N 75
DG "O5'" O N N 76
DG "C5'" C N N 77
DG "C4'" C N R 78
DG "O4'" O N N 79
DG "C3'" C N S 80
DG "O3'" O N N 81
DG "C2'" C N N 82
DG "C1'" C N R 83
DG N9 N Y N 84
DG C8 C Y N 85
DG N7 N Y N 86
DG C5 C Y N 87
DG C6 C N N 88
DG O6 O N N 89
DG N1 N N N 90
DG C2 C N N 91
DG N2 N N N 92
DG N3 N N N 93
DG C4 C Y N 94
DG HOP3 H N N 95
DG HOP2 H N N 96
DG "H5'" H N N 97
DG "H5''" H N N 98
DG "H4'" H N N 99
DG "H3'" H N N 100
DG "HO3'" H N N 101
DG "H2'" H N N 102
DG "H2''" H N N 103
DG "H1'" H N N 104
DG H8 H N N 105
DG H1 H N N 106
DG H21 H N N 107
DG H22 H N N 108
HOH O O N N 109
HOH H1 H N N 110
HOH H2 H N N 111
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5CM N1 C2 sing N N 1
5CM N1 C6 sing N N 2
5CM N1 "C1'" sing N N 3
5CM C2 N3 sing N N 4
5CM C2 O2 doub N N 5
5CM N3 C4 doub N N 6
5CM C4 C5 sing N N 7
5CM C4 N4 sing N N 8
5CM C5 C5A sing N N 9
5CM C5 C6 doub N N 10
5CM C5A H5A1 sing N N 11
5CM C5A H5A2 sing N N 12
5CM C5A H5A3 sing N N 13
5CM C6 H6 sing N N 14
5CM N4 HN41 sing N N 15
5CM N4 HN42 sing N N 16
5CM "C1'" "C2'" sing N N 17
5CM "C1'" "O4'" sing N N 18
5CM "C1'" "H1'" sing N N 19
5CM "C2'" "C3'" sing N N 20
5CM "C2'" "H2'" sing N N 21
5CM "C2'" "H2''" sing N N 22
5CM "C3'" "C4'" sing N N 23
5CM "C3'" "O3'" sing N N 24
5CM "C3'" "H3'" sing N N 25
5CM "C4'" "O4'" sing N N 26
5CM "C4'" "C5'" sing N N 27
5CM "C4'" "H4'" sing N N 28
5CM "O3'" "HO3'" sing N N 29
5CM "C5'" "O5'" sing N N 30
5CM "C5'" "H5'" sing N N 31
5CM "C5'" "H5''" sing N N 32
5CM "O5'" P sing N N 33
5CM P OP1 doub N N 34
5CM P OP2 sing N N 35
5CM P OP3 sing N N 36
5CM OP2 HOP2 sing N N 37
5CM OP3 HOP3 sing N N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
HOH O H1 sing N N 113
HOH O H2 sing N N 114
#
_ndb_struct_conf_na.entry_id 254D
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 B DC 6 1_555 -0.436 -0.101 0.264 -2.689 -5.258 -4.801 1 A_DG1:DC12_B A 1 ? B 12 ? 19 1
1 A 5CM 2 1_555 B DG 5 1_555 -0.008 -0.164 0.041 1.444 -8.570 -1.147 2 A_5CM2:DG11_B A 2 ? B 11 ? 19 1
1 A DG 3 1_555 B 5CM 4 1_555 -0.376 -0.072 -0.067 2.525 -8.020 3.468 3 A_DG3:5CM10_B A 3 ? B 10 ? 19 1
1 A 5CM 4 1_555 B DG 3 1_555 0.181 -0.148 0.097 1.834 -12.583 3.168 4 A_5CM4:DG9_B A 4 ? B 9 ? 19 1
1 A DG 5 1_555 B 5CM 2 1_555 0.038 -0.182 0.227 1.266 -10.444 -1.699 5 A_DG5:5CM8_B A 5 ? B 8 ? 19 1
1 A DC 6 1_555 B DG 1 1_555 0.918 -0.084 0.162 3.130 -2.123 -2.407 6 A_DC6:DG7_B A 6 ? B 7 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 B DC 6 1_555 A 5CM 2 1_555 B DG 5 1_555 -0.484 -1.645 3.211 3.110 4.242 34.474 -3.355 1.255 2.941 7.106
-5.211 34.861 1 AA_DG15CM2:DG11DC12_BB A 1 ? B 12 ? A 2 ? B 11 ?
1 A 5CM 2 1_555 B DG 5 1_555 A DG 3 1_555 B 5CM 4 1_555 0.706 -1.820 3.275 0.490 15.358 22.907 -6.990 -1.383 1.744 34.172
-1.089 27.526 2 AA_5CM2DG3:5CM10DG11_BB A 2 ? B 11 ? A 3 ? B 10 ?
1 A DG 3 1_555 B 5CM 4 1_555 A 5CM 4 1_555 B DG 3 1_555 -0.001 -2.077 3.409 -1.929 7.744 33.448 -4.693 -0.293 2.867 13.222
3.294 34.361 3 AA_DG35CM4:DG95CM10_BB A 3 ? B 10 ? A 4 ? B 9 ?
1 A 5CM 4 1_555 B DG 3 1_555 A DG 5 1_555 B 5CM 2 1_555 -0.763 -1.990 3.245 -0.075 13.527 24.228 -6.905 1.579 1.890 29.472
0.163 27.699 4 AA_5CM4DG5:5CM8DG9_BB A 4 ? B 9 ? A 5 ? B 8 ?
1 A DG 5 1_555 B 5CM 2 1_555 A DC 6 1_555 B DG 1 1_555 0.597 -1.622 3.357 0.440 1.476 35.590 -2.869 -0.910 3.296 2.413
-0.719 35.622 5 AA_DG5DC6:DG75CM8_BB A 5 ? B 8 ? A 6 ? B 7 ?
#
_atom_sites.entry_id 254D
_atom_sites.fract_transf_matrix[1][1] 0.025208
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.021749
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.025025
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 22.191 13.528 2.739 1.00 30.85 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 23.304 14.271 2.195 1.00 28.78 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 23.380 14.148 0.680 1.00 26.17 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 23.440 12.781 0.229 1.00 27.71 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 22.130 14.687 0.029 1.00 26.17 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 22.234 16.107 -0.016 1.00 25.93 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 22.244 14.056 -1.342 1.00 26.33 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 22.667 12.645 -0.984 1.00 26.57 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 21.544 11.723 -0.740 1.00 17.67 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 21.187 11.080 0.404 1.00 17.26 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 20.168 10.283 0.323 1.00 16.55 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 19.814 10.401 -1.026 1.00 16.32 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 18.780 9.759 -1.759 1.00 12.49 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 17.933 8.974 -1.357 1.00 16.11 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 18.786 10.141 -3.075 1.00 6.42 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 19.675 11.045 -3.605 1.00 7.42 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 19.576 11.323 -4.878 1.00 6.45 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 20.633 11.671 -2.957 1.00 10.05 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 20.649 11.293 -1.668 1.00 14.49 ? 1 DG A C4 1
HETATM 20 N N1 . 5CM A 1 2 ? 17.874 14.339 -3.549 1.00 17.37 ? 2 5CM A N1 1
HETATM 21 C C2 . 5CM A 1 2 ? 16.919 13.459 -4.007 1.00 18.27 ? 2 5CM A C2 1
HETATM 22 N N3 . 5CM A 1 2 ? 16.364 12.585 -3.127 1.00 15.51 ? 2 5CM A N3 1
HETATM 23 C C4 . 5CM A 1 2 ? 16.742 12.586 -1.876 1.00 13.07 ? 2 5CM A C4 1
HETATM 24 C C5 . 5CM A 1 2 ? 17.708 13.487 -1.360 1.00 15.35 ? 2 5CM A C5 1
HETATM 25 C C5A . 5CM A 1 2 ? 18.109 13.468 0.130 1.00 8.91 ? 2 5CM A C5A 1
HETATM 26 C C6 . 5CM A 1 2 ? 18.253 14.348 -2.229 1.00 18.19 ? 2 5CM A C6 1
HETATM 27 O O2 . 5CM A 1 2 ? 16.544 13.482 -5.185 1.00 21.52 ? 2 5CM A O2 1
HETATM 28 N N4 . 5CM A 1 2 ? 16.215 11.656 -1.101 1.00 23.62 ? 2 5CM A N4 1
HETATM 29 C "C1'" . 5CM A 1 2 ? 18.477 15.246 -4.534 1.00 18.98 ? 2 5CM A "C1'" 1
HETATM 30 C "C2'" . 5CM A 1 2 ? 17.852 16.609 -4.558 1.00 22.97 ? 2 5CM A "C2'" 1
HETATM 31 C "C3'" . 5CM A 1 2 ? 18.635 17.394 -3.552 1.00 23.25 ? 2 5CM A "C3'" 1
HETATM 32 C "C4'" . 5CM A 1 2 ? 19.993 16.898 -3.958 1.00 18.68 ? 2 5CM A "C4'" 1
HETATM 33 O "O4'" . 5CM A 1 2 ? 19.846 15.500 -4.238 1.00 21.97 ? 2 5CM A "O4'" 1
HETATM 34 O "O3'" . 5CM A 1 2 ? 18.542 18.812 -3.733 1.00 28.19 ? 2 5CM A "O3'" 1
HETATM 35 C "C5'" . 5CM A 1 2 ? 20.896 17.190 -2.823 1.00 15.11 ? 2 5CM A "C5'" 1
HETATM 36 O "O5'" . 5CM A 1 2 ? 20.346 16.676 -1.621 1.00 21.21 ? 2 5CM A "O5'" 1
HETATM 37 P P . 5CM A 1 2 ? 20.980 17.083 -0.189 1.00 27.51 ? 2 5CM A P 1
HETATM 38 O OP1 . 5CM A 1 2 ? 21.544 18.444 -0.363 1.00 28.45 ? 2 5CM A OP1 1
HETATM 39 O OP2 . 5CM A 1 2 ? 19.981 16.804 0.894 1.00 22.24 ? 2 5CM A OP2 1
ATOM 40 P P . DG A 1 3 ? 17.408 19.678 -3.034 1.00 27.22 ? 3 DG A P 1
ATOM 41 O OP1 . DG A 1 3 ? 17.571 21.104 -3.375 1.00 30.89 ? 3 DG A OP1 1
ATOM 42 O OP2 . DG A 1 3 ? 17.337 19.241 -1.631 1.00 28.51 ? 3 DG A OP2 1
ATOM 43 O "O5'" . DG A 1 3 ? 16.142 19.173 -3.888 1.00 21.36 ? 3 DG A "O5'" 1
ATOM 44 C "C5'" . DG A 1 3 ? 14.854 18.927 -3.383 1.00 14.91 ? 3 DG A "C5'" 1
ATOM 45 C "C4'" . DG A 1 3 ? 14.028 18.201 -4.423 1.00 14.44 ? 3 DG A "C4'" 1
ATOM 46 O "O4'" . DG A 1 3 ? 14.481 16.833 -4.603 1.00 16.60 ? 3 DG A "O4'" 1
ATOM 47 C "C3'" . DG A 1 3 ? 12.579 18.083 -3.964 1.00 16.81 ? 3 DG A "C3'" 1
ATOM 48 O "O3'" . DG A 1 3 ? 11.843 19.291 -4.230 1.00 17.36 ? 3 DG A "O3'" 1
ATOM 49 C "C2'" . DG A 1 3 ? 12.105 16.875 -4.750 1.00 10.78 ? 3 DG A "C2'" 1
ATOM 50 C "C1'" . DG A 1 3 ? 13.310 15.976 -4.629 1.00 12.69 ? 3 DG A "C1'" 1
ATOM 51 N N9 . DG A 1 3 ? 13.365 15.225 -3.371 1.00 14.90 ? 3 DG A N9 1
ATOM 52 C C8 . DG A 1 3 ? 14.205 15.386 -2.305 1.00 14.02 ? 3 DG A C8 1
ATOM 53 N N7 . DG A 1 3 ? 14.082 14.487 -1.388 1.00 14.02 ? 3 DG A N7 1
ATOM 54 C C5 . DG A 1 3 ? 13.077 13.644 -1.886 1.00 10.94 ? 3 DG A C5 1
ATOM 55 C C6 . DG A 1 3 ? 12.486 12.458 -1.360 1.00 13.84 ? 3 DG A C6 1
ATOM 56 O O6 . DG A 1 3 ? 12.721 11.849 -0.325 1.00 15.80 ? 3 DG A O6 1
ATOM 57 N N1 . DG A 1 3 ? 11.485 11.974 -2.156 1.00 11.01 ? 3 DG A N1 1
ATOM 58 C C2 . DG A 1 3 ? 11.120 12.547 -3.306 1.00 8.63 ? 3 DG A C2 1
ATOM 59 N N2 . DG A 1 3 ? 10.066 12.079 -3.867 1.00 7.76 ? 3 DG A N2 1
ATOM 60 N N3 . DG A 1 3 ? 11.692 13.587 -3.855 1.00 14.92 ? 3 DG A N3 1
ATOM 61 C C4 . DG A 1 3 ? 12.638 14.107 -3.081 1.00 14.02 ? 3 DG A C4 1
HETATM 62 N N1 . 5CM A 1 4 ? 8.548 14.835 -1.816 1.00 16.31 ? 4 5CM A N1 1
HETATM 63 C C2 . 5CM A 1 4 ? 8.151 13.735 -1.075 1.00 14.10 ? 4 5CM A C2 1
HETATM 64 N N3 . 5CM A 1 4 ? 8.858 13.371 0.006 1.00 11.02 ? 4 5CM A N3 1
HETATM 65 C C4 . 5CM A 1 4 ? 9.892 14.119 0.382 1.00 8.21 ? 4 5CM A C4 1
HETATM 66 C C5 . 5CM A 1 4 ? 10.281 15.310 -0.297 1.00 9.40 ? 4 5CM A C5 1
HETATM 67 C C5A . 5CM A 1 4 ? 11.360 16.228 0.309 1.00 11.51 ? 4 5CM A C5A 1
HETATM 68 C C6 . 5CM A 1 4 ? 9.610 15.612 -1.423 1.00 10.06 ? 4 5CM A C6 1
HETATM 69 O O2 . 5CM A 1 4 ? 7.137 13.112 -1.349 1.00 20.05 ? 4 5CM A O2 1
HETATM 70 N N4 . 5CM A 1 4 ? 10.574 13.735 1.426 1.00 10.56 ? 4 5CM A N4 1
HETATM 71 C "C1'" . 5CM A 1 4 ? 7.786 15.138 -3.040 1.00 13.94 ? 4 5CM A "C1'" 1
HETATM 72 C "C2'" . 5CM A 1 4 ? 6.594 15.981 -2.741 1.00 16.85 ? 4 5CM A "C2'" 1
HETATM 73 C "C3'" . 5CM A 1 4 ? 7.076 17.393 -2.947 1.00 19.83 ? 4 5CM A "C3'" 1
HETATM 74 C "C4'" . 5CM A 1 4 ? 7.839 17.149 -4.233 1.00 17.84 ? 4 5CM A "C4'" 1
HETATM 75 O "O4'" . 5CM A 1 4 ? 8.539 15.908 -3.988 1.00 21.05 ? 4 5CM A "O4'" 1
HETATM 76 O "O3'" . 5CM A 1 4 ? 5.997 18.364 -3.030 1.00 24.71 ? 4 5CM A "O3'" 1
HETATM 77 C "C5'" . 5CM A 1 4 ? 8.810 18.264 -4.495 1.00 18.10 ? 4 5CM A "C5'" 1
HETATM 78 O "O5'" . 5CM A 1 4 ? 9.633 18.423 -3.337 1.00 24.00 ? 4 5CM A "O5'" 1
HETATM 79 P P . 5CM A 1 4 ? 10.705 19.606 -3.137 1.00 25.27 ? 4 5CM A P 1
HETATM 80 O OP1 . 5CM A 1 4 ? 10.020 20.874 -3.500 1.00 29.22 ? 4 5CM A OP1 1
HETATM 81 O OP2 . 5CM A 1 4 ? 11.292 19.430 -1.783 1.00 20.73 ? 4 5CM A OP2 1
ATOM 82 P P . DG A 1 5 ? 5.438 19.162 -1.702 1.00 29.77 ? 5 DG A P 1
ATOM 83 O OP1 . DG A 1 5 ? 4.527 20.252 -2.149 1.00 30.49 ? 5 DG A OP1 1
ATOM 84 O OP2 . DG A 1 5 ? 6.564 19.480 -0.780 1.00 22.80 ? 5 DG A OP2 1
ATOM 85 O "O5'" . DG A 1 5 ? 4.548 18.025 -0.979 1.00 26.28 ? 5 DG A "O5'" 1
ATOM 86 C "C5'" . DG A 1 5 ? 3.315 17.497 -1.497 1.00 22.95 ? 5 DG A "C5'" 1
ATOM 87 C "C4'" . DG A 1 5 ? 2.809 16.316 -0.649 1.00 18.57 ? 5 DG A "C4'" 1
ATOM 88 O "O4'" . DG A 1 5 ? 3.749 15.216 -0.656 1.00 15.47 ? 5 DG A "O4'" 1
ATOM 89 C "C3'" . DG A 1 5 ? 2.612 16.670 0.834 1.00 18.63 ? 5 DG A "C3'" 1
ATOM 90 O "O3'" . DG A 1 5 ? 1.457 17.456 1.092 1.00 19.29 ? 5 DG A "O3'" 1
ATOM 91 C "C2'" . DG A 1 5 ? 2.408 15.287 1.351 1.00 17.37 ? 5 DG A "C2'" 1
ATOM 92 C "C1'" . DG A 1 5 ? 3.524 14.578 0.625 1.00 15.92 ? 5 DG A "C1'" 1
ATOM 93 N N9 . DG A 1 5 ? 4.705 14.629 1.444 1.00 5.61 ? 5 DG A N9 1
ATOM 94 C C8 . DG A 1 5 ? 5.791 15.430 1.383 1.00 11.41 ? 5 DG A C8 1
ATOM 95 N N7 . DG A 1 5 ? 6.732 15.158 2.225 1.00 5.55 ? 5 DG A N7 1
ATOM 96 C C5 . DG A 1 5 ? 6.222 14.060 2.900 1.00 6.38 ? 5 DG A C5 1
ATOM 97 C C6 . DG A 1 5 ? 6.792 13.221 3.903 1.00 7.27 ? 5 DG A C6 1
ATOM 98 O O6 . DG A 1 5 ? 7.947 13.188 4.312 1.00 11.45 ? 5 DG A O6 1
ATOM 99 N N1 . DG A 1 5 ? 5.884 12.252 4.338 1.00 2.46 ? 5 DG A N1 1
ATOM 100 C C2 . DG A 1 5 ? 4.623 12.079 3.828 1.00 5.68 ? 5 DG A C2 1
ATOM 101 N N2 . DG A 1 5 ? 3.815 11.201 4.401 1.00 14.89 ? 5 DG A N2 1
ATOM 102 N N3 . DG A 1 5 ? 4.117 12.769 2.828 1.00 3.64 ? 5 DG A N3 1
ATOM 103 C C4 . DG A 1 5 ? 4.966 13.754 2.426 1.00 8.73 ? 5 DG A C4 1
ATOM 104 P P . DC A 1 6 ? 1.295 18.490 2.326 1.00 18.57 ? 6 DC A P 1
ATOM 105 O OP1 . DC A 1 6 ? 0.125 19.331 1.995 1.00 18.89 ? 6 DC A OP1 1
ATOM 106 O OP2 . DC A 1 6 ? 2.611 19.122 2.664 1.00 11.42 ? 6 DC A OP2 1
ATOM 107 O "O5'" . DC A 1 6 ? 0.880 17.532 3.575 1.00 17.54 ? 6 DC A "O5'" 1
ATOM 108 C "C5'" . DC A 1 6 ? -0.219 16.605 3.564 1.00 17.56 ? 6 DC A "C5'" 1
ATOM 109 C "C4'" . DC A 1 6 ? 0.039 15.577 4.628 1.00 13.09 ? 6 DC A "C4'" 1
ATOM 110 O "O4'" . DC A 1 6 ? 1.295 14.960 4.374 1.00 11.84 ? 6 DC A "O4'" 1
ATOM 111 C "C3'" . DC A 1 6 ? 0.240 16.196 5.994 1.00 18.64 ? 6 DC A "C3'" 1
ATOM 112 O "O3'" . DC A 1 6 ? -0.940 16.586 6.708 1.00 18.51 ? 6 DC A "O3'" 1
ATOM 113 C "C2'" . DC A 1 6 ? 0.938 15.070 6.652 1.00 17.06 ? 6 DC A "C2'" 1
ATOM 114 C "C1'" . DC A 1 6 ? 1.856 14.546 5.587 1.00 7.97 ? 6 DC A "C1'" 1
ATOM 115 N N1 . DC A 1 6 ? 3.229 15.001 5.680 1.00 11.35 ? 6 DC A N1 1
ATOM 116 C C2 . DC A 1 6 ? 4.039 14.337 6.574 1.00 12.20 ? 6 DC A C2 1
ATOM 117 O O2 . DC A 1 6 ? 3.644 13.356 7.201 1.00 14.05 ? 6 DC A O2 1
ATOM 118 N N3 . DC A 1 6 ? 5.298 14.753 6.728 1.00 12.58 ? 6 DC A N3 1
ATOM 119 C C4 . DC A 1 6 ? 5.750 15.743 5.984 1.00 12.03 ? 6 DC A C4 1
ATOM 120 N N4 . DC A 1 6 ? 7.010 16.070 6.157 1.00 15.25 ? 6 DC A N4 1
ATOM 121 C C5 . DC A 1 6 ? 4.955 16.418 5.029 1.00 7.75 ? 6 DC A C5 1
ATOM 122 C C6 . DC A 1 6 ? 3.687 16.017 4.925 1.00 7.45 ? 6 DC A C6 1
ATOM 123 O "O5'" . DG B 1 1 ? 12.344 9.002 12.097 1.00 16.68 ? 7 DG B "O5'" 1
ATOM 124 C "C5'" . DG B 1 1 ? 11.823 8.373 13.242 1.00 19.26 ? 7 DG B "C5'" 1
ATOM 125 C "C4'" . DG B 1 1 ? 10.342 8.599 13.302 1.00 21.58 ? 7 DG B "C4'" 1
ATOM 126 O "O4'" . DG B 1 1 ? 9.982 9.974 13.357 1.00 25.70 ? 7 DG B "O4'" 1
ATOM 127 C "C3'" . DG B 1 1 ? 9.644 8.126 12.066 1.00 26.71 ? 7 DG B "C3'" 1
ATOM 128 O "O3'" . DG B 1 1 ? 9.465 6.733 12.244 1.00 34.17 ? 7 DG B "O3'" 1
ATOM 129 C "C2'" . DG B 1 1 ? 8.303 8.805 12.196 1.00 22.69 ? 7 DG B "C2'" 1
ATOM 130 C "C1'" . DG B 1 1 ? 8.703 10.163 12.702 1.00 24.05 ? 7 DG B "C1'" 1
ATOM 131 N N9 . DG B 1 1 ? 8.893 11.159 11.637 1.00 19.83 ? 7 DG B N9 1
ATOM 132 C C8 . DG B 1 1 ? 10.013 11.893 11.367 1.00 19.39 ? 7 DG B C8 1
ATOM 133 N N7 . DG B 1 1 ? 9.896 12.769 10.422 1.00 17.41 ? 7 DG B N7 1
ATOM 134 C C5 . DG B 1 1 ? 8.583 12.583 10.007 1.00 18.18 ? 7 DG B C5 1
ATOM 135 C C6 . DG B 1 1 ? 7.879 13.222 8.975 1.00 15.39 ? 7 DG B C6 1
ATOM 136 O O6 . DG B 1 1 ? 8.299 14.037 8.164 1.00 12.86 ? 7 DG B O6 1
ATOM 137 N N1 . DG B 1 1 ? 6.588 12.782 8.916 1.00 11.26 ? 7 DG B N1 1
ATOM 138 C C2 . DG B 1 1 ? 6.054 11.825 9.739 1.00 14.19 ? 7 DG B C2 1
ATOM 139 N N2 . DG B 1 1 ? 4.760 11.607 9.674 1.00 10.61 ? 7 DG B N2 1
ATOM 140 N N3 . DG B 1 1 ? 6.715 11.148 10.650 1.00 12.57 ? 7 DG B N3 1
ATOM 141 C C4 . DG B 1 1 ? 7.969 11.599 10.744 1.00 15.24 ? 7 DG B C4 1
HETATM 142 N N1 . 5CM B 1 2 ? 6.274 8.752 7.945 1.00 18.74 ? 8 5CM B N1 1
HETATM 143 C C2 . 5CM B 1 2 ? 5.825 9.546 6.900 1.00 15.27 ? 8 5CM B C2 1
HETATM 144 N N3 . 5CM B 1 2 ? 6.702 10.408 6.331 1.00 15.93 ? 8 5CM B N3 1
HETATM 145 C C4 . 5CM B 1 2 ? 7.970 10.440 6.759 1.00 17.91 ? 8 5CM B C4 1
HETATM 146 C C5 . 5CM B 1 2 ? 8.478 9.567 7.777 1.00 17.45 ? 8 5CM B C5 1
HETATM 147 C C5A . 5CM B 1 2 ? 9.949 9.619 8.218 1.00 13.81 ? 8 5CM B C5A 1
HETATM 148 C C6 . 5CM B 1 2 ? 7.597 8.731 8.341 1.00 16.60 ? 8 5CM B C6 1
HETATM 149 O O2 . 5CM B 1 2 ? 4.680 9.413 6.448 1.00 17.57 ? 8 5CM B O2 1
HETATM 150 N N4 . 5CM B 1 2 ? 8.760 11.371 6.242 1.00 24.60 ? 8 5CM B N4 1
HETATM 151 C "C1'" . 5CM B 1 2 ? 5.245 7.989 8.678 1.00 16.53 ? 8 5CM B "C1'" 1
HETATM 152 C "C2'" . 5CM B 1 2 ? 4.920 6.731 7.971 1.00 20.29 ? 8 5CM B "C2'" 1
HETATM 153 C "C3'" . 5CM B 1 2 ? 5.866 5.746 8.620 1.00 23.04 ? 8 5CM B "C3'" 1
HETATM 154 C "C4'" . 5CM B 1 2 ? 5.721 6.220 10.079 1.00 20.56 ? 8 5CM B "C4'" 1
HETATM 155 O "O4'" . 5CM B 1 2 ? 5.742 7.624 9.971 1.00 12.72 ? 8 5CM B "O4'" 1
HETATM 156 O "O3'" . 5CM B 1 2 ? 5.413 4.392 8.356 1.00 26.69 ? 8 5CM B "O3'" 1
HETATM 157 C "C5'" . 5CM B 1 2 ? 6.852 5.733 10.938 1.00 13.46 ? 8 5CM B "C5'" 1
HETATM 158 O "O5'" . 5CM B 1 2 ? 8.048 6.089 10.316 1.00 22.80 ? 8 5CM B "O5'" 1
HETATM 159 P P . 5CM B 1 2 ? 9.455 5.758 10.999 1.00 30.68 ? 8 5CM B P 1
HETATM 160 O OP1 . 5CM B 1 2 ? 9.448 4.379 11.533 1.00 33.97 ? 8 5CM B OP1 1
HETATM 161 O OP2 . 5CM B 1 2 ? 10.538 6.219 10.095 1.00 36.50 ? 8 5CM B OP2 1
ATOM 162 P P . DG B 1 3 ? 6.251 3.476 7.305 1.00 28.03 ? 9 DG B P 1
ATOM 163 O OP1 . DG B 1 3 ? 5.652 2.117 7.347 1.00 33.79 ? 9 DG B OP1 1
ATOM 164 O OP2 . DG B 1 3 ? 7.704 3.705 7.542 1.00 20.43 ? 9 DG B OP2 1
ATOM 165 O "O5'" . DG B 1 3 ? 5.828 4.051 5.885 1.00 26.94 ? 9 DG B "O5'" 1
ATOM 166 C "C5'" . DG B 1 3 ? 6.643 4.339 4.756 1.00 17.23 ? 9 DG B "C5'" 1
ATOM 167 C "C4'" . DG B 1 3 ? 5.664 5.108 3.908 1.00 19.51 ? 9 DG B "C4'" 1
ATOM 168 O "O4'" . DG B 1 3 ? 5.300 6.375 4.530 1.00 15.36 ? 9 DG B "O4'" 1
ATOM 169 C "C3'" . DG B 1 3 ? 6.089 5.337 2.441 1.00 18.42 ? 9 DG B "C3'" 1
ATOM 170 O "O3'" . DG B 1 3 ? 5.838 4.132 1.677 1.00 19.46 ? 9 DG B "O3'" 1
ATOM 171 C "C2'" . DG B 1 3 ? 5.088 6.471 2.163 1.00 15.98 ? 9 DG B "C2'" 1
ATOM 172 C "C1'" . DG B 1 3 ? 5.227 7.307 3.440 1.00 16.67 ? 9 DG B "C1'" 1
ATOM 173 N N9 . DG B 1 3 ? 6.517 8.034 3.482 1.00 15.93 ? 9 DG B N9 1
ATOM 174 C C8 . DG B 1 3 ? 7.571 7.841 4.321 1.00 15.26 ? 9 DG B C8 1
ATOM 175 N N7 . DG B 1 3 ? 8.551 8.683 4.168 1.00 15.17 ? 9 DG B N7 1
ATOM 176 C C5 . DG B 1 3 ? 8.097 9.500 3.116 1.00 11.79 ? 9 DG B C5 1
ATOM 177 C C6 . DG B 1 3 ? 8.712 10.605 2.455 1.00 12.50 ? 9 DG B C6 1
ATOM 178 O O6 . DG B 1 3 ? 9.835 11.079 2.610 1.00 13.86 ? 9 DG B O6 1
ATOM 179 N N1 . DG B 1 3 ? 7.917 11.110 1.446 1.00 12.49 ? 9 DG B N1 1
ATOM 180 C C2 . DG B 1 3 ? 6.724 10.614 1.087 1.00 6.41 ? 9 DG B C2 1
ATOM 181 N N2 . DG B 1 3 ? 6.160 11.138 0.026 1.00 8.17 ? 9 DG B N2 1
ATOM 182 N N3 . DG B 1 3 ? 6.129 9.621 1.712 1.00 10.94 ? 9 DG B N3 1
ATOM 183 C C4 . DG B 1 3 ? 6.867 9.103 2.703 1.00 10.72 ? 9 DG B C4 1
HETATM 184 N N1 . 5CM B 1 4 ? 8.225 8.198 -1.401 1.00 15.43 ? 10 5CM B N1 1
HETATM 185 C C2 . 5CM B 1 4 ? 8.963 9.281 -1.776 1.00 13.28 ? 10 5CM B C2 1
HETATM 186 N N3 . 5CM B 1 4 ? 10.029 9.645 -1.046 1.00 8.84 ? 10 5CM B N3 1
HETATM 187 C C4 . 5CM B 1 4 ? 10.351 8.930 0.024 1.00 10.46 ? 10 5CM B C4 1
HETATM 188 C C5 . 5CM B 1 4 ? 9.637 7.772 0.384 1.00 12.74 ? 10 5CM B C5 1
HETATM 189 C C5A . 5CM B 1 4 ? 10.090 6.924 1.570 1.00 16.04 ? 10 5CM B C5A 1
HETATM 190 C C6 . 5CM B 1 4 ? 8.565 7.449 -0.344 1.00 13.17 ? 10 5CM B C6 1
HETATM 191 O O2 . 5CM B 1 4 ? 8.688 9.903 -2.796 1.00 20.65 ? 10 5CM B O2 1
HETATM 192 N N4 . 5CM B 1 4 ? 11.329 9.348 0.818 1.00 11.44 ? 10 5CM B N4 1
HETATM 193 C "C1'" . 5CM B 1 4 ? 7.030 7.884 -2.188 1.00 15.92 ? 10 5CM B "C1'" 1
HETATM 194 C "C2'" . 5CM B 1 4 ? 7.341 7.091 -3.424 1.00 15.57 ? 10 5CM B "C2'" 1
HETATM 195 C "C3'" . 5CM B 1 4 ? 7.176 5.711 -2.938 1.00 19.61 ? 10 5CM B "C3'" 1
HETATM 196 C "C4'" . 5CM B 1 4 ? 5.878 5.902 -2.118 1.00 21.05 ? 10 5CM B "C4'" 1
HETATM 197 O "O4'" . 5CM B 1 4 ? 6.077 7.131 -1.413 1.00 19.57 ? 10 5CM B "O4'" 1
HETATM 198 O "O3'" . 5CM B 1 4 ? 7.016 4.801 -4.026 1.00 22.88 ? 10 5CM B "O3'" 1
HETATM 199 C "C5'" . 5CM B 1 4 ? 5.644 4.683 -1.218 1.00 18.98 ? 10 5CM B "C5'" 1
HETATM 200 O "O5'" . 5CM B 1 4 ? 6.848 4.399 -0.493 1.00 17.69 ? 10 5CM B "O5'" 1
HETATM 201 P P . 5CM B 1 4 ? 6.901 3.414 0.716 1.00 19.54 ? 10 5CM B P 1
HETATM 202 O OP1 . 5CM B 1 4 ? 6.379 2.102 0.282 1.00 20.84 ? 10 5CM B OP1 1
HETATM 203 O OP2 . 5CM B 1 4 ? 8.238 3.498 1.314 1.00 21.96 ? 10 5CM B OP2 1
ATOM 204 P P . DG B 1 5 ? 8.236 3.943 -4.580 1.00 28.08 ? 11 DG B P 1
ATOM 205 O OP1 . DG B 1 5 ? 7.632 2.938 -5.471 1.00 30.12 ? 11 DG B OP1 1
ATOM 206 O OP2 . DG B 1 5 ? 9.148 3.545 -3.465 1.00 22.16 ? 11 DG B OP2 1
ATOM 207 O "O5'" . DG B 1 5 ? 9.057 5.004 -5.472 1.00 27.42 ? 11 DG B "O5'" 1
ATOM 208 C "C5'" . DG B 1 5 ? 8.562 5.496 -6.738 1.00 24.71 ? 11 DG B "C5'" 1
ATOM 209 C "C4'" . DG B 1 5 ? 9.387 6.650 -7.241 1.00 17.68 ? 11 DG B "C4'" 1
ATOM 210 O "O4'" . DG B 1 5 ? 9.470 7.615 -6.180 1.00 14.45 ? 11 DG B "O4'" 1
ATOM 211 C "C3'" . DG B 1 5 ? 10.836 6.312 -7.519 1.00 15.37 ? 11 DG B "C3'" 1
ATOM 212 O "O3'" . DG B 1 5 ? 11.024 5.539 -8.702 1.00 17.93 ? 11 DG B "O3'" 1
ATOM 213 C "C2'" . DG B 1 5 ? 11.313 7.725 -7.656 1.00 14.12 ? 11 DG B "C2'" 1
ATOM 214 C "C1'" . DG B 1 5 ? 10.682 8.333 -6.420 1.00 14.03 ? 11 DG B "C1'" 1
ATOM 215 N N9 . DG B 1 5 ? 11.479 8.345 -5.214 1.00 9.35 ? 11 DG B N9 1
ATOM 216 C C8 . DG B 1 5 ? 11.371 7.588 -4.097 1.00 16.59 ? 11 DG B C8 1
ATOM 217 N N7 . DG B 1 5 ? 12.166 7.890 -3.108 1.00 14.36 ? 11 DG B N7 1
ATOM 218 C C5 . DG B 1 5 ? 12.874 8.964 -3.659 1.00 11.28 ? 11 DG B C5 1
ATOM 219 C C6 . DG B 1 5 ? 13.880 9.787 -3.080 1.00 14.34 ? 11 DG B C6 1
ATOM 220 O O6 . DG B 1 5 ? 14.279 9.783 -1.910 1.00 13.88 ? 11 DG B O6 1
ATOM 221 N N1 . DG B 1 5 ? 14.329 10.757 -3.982 1.00 12.64 ? 11 DG B N1 1
ATOM 222 C C2 . DG B 1 5 ? 13.842 10.932 -5.250 1.00 14.25 ? 11 DG B C2 1
ATOM 223 N N2 . DG B 1 5 ? 14.384 11.871 -5.997 1.00 19.35 ? 11 DG B N2 1
ATOM 224 N N3 . DG B 1 5 ? 12.890 10.194 -5.792 1.00 11.36 ? 11 DG B N3 1
ATOM 225 C C4 . DG B 1 5 ? 12.455 9.230 -4.939 1.00 9.47 ? 11 DG B C4 1
ATOM 226 P P . DC B 1 6 ? 12.253 4.490 -8.877 1.00 17.00 ? 12 DC B P 1
ATOM 227 O OP1 . DC B 1 6 ? 12.036 3.681 -10.094 1.00 21.76 ? 12 DC B OP1 1
ATOM 228 O OP2 . DC B 1 6 ? 12.487 3.804 -7.594 1.00 13.80 ? 12 DC B OP2 1
ATOM 229 O "O5'" . DC B 1 6 ? 13.494 5.500 -9.198 1.00 11.20 ? 12 DC B "O5'" 1
ATOM 230 C "C5'" . DC B 1 6 ? 13.597 6.382 -10.275 1.00 6.59 ? 12 DC B "C5'" 1
ATOM 231 C "C4'" . DC B 1 6 ? 14.649 7.370 -9.906 1.00 7.85 ? 12 DC B "C4'" 1
ATOM 232 O "O4'" . DC B 1 6 ? 14.261 8.045 -8.684 1.00 10.31 ? 12 DC B "O4'" 1
ATOM 233 C "C3'" . DC B 1 6 ? 15.962 6.728 -9.555 1.00 9.58 ? 12 DC B "C3'" 1
ATOM 234 O "O3'" . DC B 1 6 ? 16.818 6.318 -10.591 1.00 5.51 ? 12 DC B "O3'" 1
ATOM 235 C "C2'" . DC B 1 6 ? 16.599 7.899 -8.868 1.00 15.14 ? 12 DC B "C2'" 1
ATOM 236 C "C1'" . DC B 1 6 ? 15.473 8.514 -8.062 1.00 12.57 ? 12 DC B "C1'" 1
ATOM 237 N N1 . DC B 1 6 ? 15.649 8.118 -6.659 1.00 17.16 ? 12 DC B N1 1
ATOM 238 C C2 . DC B 1 6 ? 16.620 8.799 -5.890 1.00 17.54 ? 12 DC B C2 1
ATOM 239 O O2 . DC B 1 6 ? 17.368 9.662 -6.391 1.00 15.63 ? 12 DC B O2 1
ATOM 240 N N3 . DC B 1 6 ? 16.750 8.445 -4.576 1.00 11.14 ? 12 DC B N3 1
ATOM 241 C C4 . DC B 1 6 ? 16.000 7.470 -4.061 1.00 11.19 ? 12 DC B C4 1
ATOM 242 N N4 . DC B 1 6 ? 16.209 7.114 -2.800 1.00 9.65 ? 12 DC B N4 1
ATOM 243 C C5 . DC B 1 6 ? 15.016 6.781 -4.829 1.00 11.50 ? 12 DC B C5 1
ATOM 244 C C6 . DC B 1 6 ? 14.885 7.127 -6.127 1.00 13.05 ? 12 DC B C6 1
HETATM 245 O O . HOH C 2 . ? 8.800 19.056 0.839 1.00 40.82 ? 14 HOH A O 1
HETATM 246 O O . HOH C 2 . ? 15.467 15.287 -7.110 1.00 30.93 ? 15 HOH A O 1
HETATM 247 O O . HOH C 2 . ? 6.057 11.487 -3.840 1.00 45.05 ? 16 HOH A O 1
HETATM 248 O O . HOH C 2 . ? 16.803 12.886 -7.597 1.00 35.47 ? 20 HOH A O 1
HETATM 249 O O . HOH C 2 . ? -0.934 17.248 0.213 1.00 34.80 ? 22 HOH A O 1
HETATM 250 O O . HOH C 2 . ? 14.000 12.546 1.797 1.00 64.66 ? 23 HOH A O 1
HETATM 251 O O . HOH C 2 . ? -2.734 19.599 0.232 1.00 47.71 ? 26 HOH A O 1
HETATM 252 O O . HOH C 2 . ? 5.084 19.129 3.352 1.00 32.89 ? 27 HOH A O 1
HETATM 253 O O . HOH C 2 . ? 10.906 20.726 -6.758 1.00 50.65 ? 31 HOH A O 1
HETATM 254 O O . HOH C 2 . ? 13.985 18.958 0.518 1.00 55.96 ? 32 HOH A O 1
HETATM 255 O O . HOH C 2 . ? 0.000 22.991 0.000 0.50 67.27 ? 33 HOH A O 1
HETATM 256 O O . HOH C 2 . ? 8.149 23.237 -3.202 1.00 35.02 ? 36 HOH A O 1
HETATM 257 O O . HOH C 2 . ? 19.555 8.106 2.516 1.00 45.28 ? 38 HOH A O 1
HETATM 258 O O . HOH C 2 . ? 15.824 23.317 -1.767 1.00 42.63 ? 39 HOH A O 1
HETATM 259 O O . HOH C 2 . ? 17.310 17.175 -0.027 1.00 56.26 ? 40 HOH A O 1
HETATM 260 O O . HOH C 2 . ? 15.446 14.597 0.387 1.00 41.09 ? 41 HOH A O 1
HETATM 261 O O . HOH C 2 . ? 8.208 15.784 4.021 1.00 42.78 ? 42 HOH A O 1
HETATM 262 O O . HOH C 2 . ? 9.917 22.991 0.000 0.50 45.97 ? 43 HOH A O 1
HETATM 263 O O . HOH C 2 . ? 9.279 18.624 6.656 1.00 56.34 ? 44 HOH A O 1
HETATM 264 O O . HOH C 2 . ? 15.370 21.764 -0.338 1.00 57.52 ? 45 HOH A O 1
HETATM 265 O O . HOH C 2 . ? 7.137 18.665 3.901 1.00 53.89 ? 46 HOH A O 1
HETATM 266 O O . HOH D 2 . ? 6.071 -0.119 2.511 1.00 37.17 ? 13 HOH B O 1
HETATM 267 O O . HOH D 2 . ? 11.095 7.617 5.254 1.00 52.47 ? 17 HOH B O 1
HETATM 268 O O . HOH D 2 . ? 15.755 3.864 -12.721 1.00 36.28 ? 18 HOH B O 1
HETATM 269 O O . HOH D 2 . ? 13.030 3.929 -5.222 1.00 32.83 ? 19 HOH B O 1
HETATM 270 O O . HOH D 2 . ? 13.853 4.546 -2.533 1.00 45.83 ? 21 HOH B O 1
HETATM 271 O O . HOH D 2 . ? 8.907 0.755 -1.216 1.00 30.72 ? 24 HOH B O 1
HETATM 272 O O . HOH D 2 . ? 10.257 3.907 3.336 1.00 24.87 ? 25 HOH B O 1
HETATM 273 O O . HOH D 2 . ? 2.673 4.001 5.900 1.00 46.74 ? 28 HOH B O 1
HETATM 274 O O . HOH D 2 . ? 9.353 5.717 7.499 1.00 16.68 ? 29 HOH B O 1
HETATM 275 O O . HOH D 2 . ? 14.339 6.291 12.992 1.00 51.95 ? 30 HOH B O 1
HETATM 276 O O . HOH D 2 . ? 2.719 7.977 5.061 1.00 35.97 ? 34 HOH B O 1
HETATM 277 O O . HOH D 2 . ? 10.280 15.447 7.163 1.00 49.55 ? 35 HOH B O 1
HETATM 278 O O . HOH D 2 . ? 10.210 4.953 -11.297 1.00 38.22 ? 37 HOH B O 1
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