data_253D
#
_entry.id 253D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 253D pdb_0000253d 10.2210/pdb253d/pdb
RCSB UDI047 ? ?
WWPDB D_1000177658 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1996-04-15
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' pdbx_struct_conn_angle
5 4 'Structure model' struct_conn
6 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
15 4 'Structure model' '_pdbx_struct_conn_angle.value'
16 4 'Structure model' '_struct_conn.pdbx_dist_value'
17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'
23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
28 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
29 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
30 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 253D
_pdbx_database_status.recvd_initial_deposition_date 1996-03-20
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Mooers, B.H.M.' 1
'Ho, P.S.' 2
#
_citation.id primary
_citation.title
'Crystal Structure of the B-DNA Nonamer d(GCGTACGCG) with a Novel d[G*(G.C)] Base-triplet Involving the Minor Groove'
_citation.journal_abbrev 'To be Published'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year 1996
_citation.journal_id_ASTM ?
_citation.country ?
_citation.journal_id_ISSN ?
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Mooers, B.H.M.' 1 ?
primary 'Ho, P.S.' 2 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*CP*G)-3')
;
2756.811 1 ? ? ? ?
2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ?
3 water nat water 18.015 29 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DT)(DA)(DC)(DG)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can GCGTACGCG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'MAGNESIUM ION' MG
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DC n
1 3 DG n
1 4 DT n
1 5 DA n
1 6 DC n
1 7 DG n
1 8 DC n
1 9 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 DC 2 2 2 DC C A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 DT 4 4 4 DT T A . n
A 1 5 DA 5 5 5 DA A A . n
A 1 6 DC 6 6 6 DC C A . n
A 1 7 DG 7 7 7 DG G A . n
A 1 8 DC 8 8 8 DC C A . n
A 1 9 DG 9 9 9 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG 1 10 10 MG MO4 A .
C 3 HOH 1 11 11 HOH HOH A .
C 3 HOH 2 12 12 HOH HOH A .
C 3 HOH 3 13 13 HOH HOH A .
C 3 HOH 4 14 14 HOH HOH A .
C 3 HOH 5 15 15 HOH HOH A .
C 3 HOH 6 16 16 HOH HOH A .
C 3 HOH 7 17 17 HOH HOH A .
C 3 HOH 8 18 18 HOH HOH A .
C 3 HOH 9 19 19 HOH HOH A .
C 3 HOH 10 20 20 HOH HOH A .
C 3 HOH 11 21 21 HOH HOH A .
C 3 HOH 12 22 22 HOH HOH A .
C 3 HOH 13 23 23 HOH HOH A .
C 3 HOH 14 24 24 HOH HOH A .
C 3 HOH 15 25 25 HOH HOH A .
C 3 HOH 16 26 26 HOH HOH A .
C 3 HOH 17 27 27 HOH HOH A .
C 3 HOH 18 28 28 HOH HOH A .
C 3 HOH 19 29 29 HOH HOH A .
C 3 HOH 20 30 30 HOH HOH A .
C 3 HOH 21 31 31 HOH HOH A .
C 3 HOH 22 32 32 HOH HOH A .
C 3 HOH 23 33 33 HOH HOH A .
C 3 HOH 24 34 34 HOH HOH A .
C 3 HOH 25 35 35 HOH HOH A .
C 3 HOH 26 36 36 HOH HOH A .
C 3 HOH 27 37 37 HOH HOH A .
C 3 HOH 28 38 10 HOH MO4 A .
C 3 HOH 29 39 10 HOH MO4 A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
X-PLOR refinement . ? 1
XSCANS 'data reduction' . ? 2
#
_cell.entry_id 253D
_cell.length_a 38.915
_cell.length_b 38.915
_cell.length_c 33.026
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 253D
_symmetry.space_group_name_H-M 'P 42 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 94
#
_exptl.entry_id 253D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.27
_exptl_crystal.density_percent_sol 45.76
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH 6.00
_exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 'NA CACODYLATE' ? ? ?
1 4 1 MGCL2 ? ? ?
1 5 1 SPERMINE ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.crystal_id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'SIEMENS P4'
_diffrn_detector.pdbx_collection_date 1995-08-20
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'SEALED TUBE'
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 253D
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 32.000
_reflns.d_resolution_high 2.200
_reflns.number_obs 1126
_reflns.number_all 1958
_reflns.percent_possible_obs 76.430
_reflns.pdbx_Rmerge_I_obs 0.0420000
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 253D
_refine.ls_number_reflns_obs 920
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.000
_refine.ls_d_res_high 2.200
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1931000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.1931000
_refine.ls_R_factor_R_free 0.2137000
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 253D
_refine_analyze.Luzzati_coordinate_error_obs 0.27
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 183
_refine_hist.pdbx_number_atoms_ligand 3
_refine_hist.number_atoms_solvent 27
_refine_hist.number_atoms_total 213
_refine_hist.d_res_high 2.200
_refine_hist.d_res_low 8.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 1.62 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 253D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 253D
_struct.title
'CRYSTAL STRUCTURE OF THE B-DNA NONAMER D(GCGTACGCG) WITH A NOVEL D[G*(G.C)] BASE-TRIPLET INVOLVING THE MINOR GROOVE'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 253D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'B-DNA, DOUBLE HELIX, BASE TRIPLET, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 253D
_struct_ref.pdbx_db_accession 253D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 253D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 9
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 253D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 9
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 9
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A DG 9 OP1 ? ? ? 1_555 B MG . MG ? ? A DG 9 A MG 10 1_555 ? ? ? ? ? ? ? 2.326 ? ?
metalc2 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 10 A HOH 38 1_555 ? ? ? ? ? ? ? 2.147 ? ?
metalc3 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 10 A HOH 39 1_555 ? ? ? ? ? ? ? 2.177 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 5 A DT 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 5 A DT 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 OP1 ? A DG 9 ? A DG 9 ? 1_555 MG ? B MG . ? A MG 10 ? 1_555 O ? C HOH . ? A HOH 38 ? 1_555 90.6 ?
2 OP1 ? A DG 9 ? A DG 9 ? 1_555 MG ? B MG . ? A MG 10 ? 1_555 O ? C HOH . ? A HOH 39 ? 1_555 76.3 ?
3 O ? C HOH . ? A HOH 38 ? 1_555 MG ? B MG . ? A MG 10 ? 1_555 O ? C HOH . ? A HOH 39 ? 1_555 83.4 ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id MG
_struct_site.pdbx_auth_seq_id 10
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 6
_struct_site.details 'BINDING SITE FOR RESIDUE MG A 10'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 6 DG A 9 ? DG A 9 . ? 1_555 ?
2 AC1 6 DG A 9 ? DG A 9 . ? 2_565 ?
3 AC1 6 HOH C . ? HOH A 38 . ? 2_565 ?
4 AC1 6 HOH C . ? HOH A 38 . ? 1_555 ?
5 AC1 6 HOH C . ? HOH A 39 . ? 2_565 ?
6 AC1 6 HOH C . ? HOH A 39 . ? 1_555 ?
#
_pdbx_validate_planes.id 1
_pdbx_validate_planes.PDB_model_num 1
_pdbx_validate_planes.auth_comp_id DG
_pdbx_validate_planes.auth_asym_id A
_pdbx_validate_planes.auth_seq_id 1
_pdbx_validate_planes.PDB_ins_code ?
_pdbx_validate_planes.label_alt_id ?
_pdbx_validate_planes.rmsd 0.098
_pdbx_validate_planes.type 'SIDE CHAIN'
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A MG 10 ? B MG .
2 1 A HOH 13 ? C HOH .
3 1 A HOH 28 ? C HOH .
4 1 A HOH 36 ? C HOH .
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' fix 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
HOH O O N N 144
HOH H1 H N N 145
HOH H2 H N N 146
MG MG MG N N 147
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
#
_ndb_struct_conf_na.entry_id 253D
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 7_555 -0.417 -0.194 -0.061 -7.590 8.181 -6.276 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A DC 2 1_555 A DG 7 7_555 -0.040 -0.240 0.199 -3.517 1.535 0.988 2 A_DC2:DG7_A A 2 ? A 7 ? 19 1
1 A DG 3 1_555 A DC 6 7_555 0.056 -0.396 0.316 12.770 -9.832 -3.695 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1
1 A DT 4 1_555 A DA 5 7_555 -0.194 0.084 0.174 5.855 -17.443 8.770 4 A_DT4:DA5_A A 4 ? A 5 ? 20 1
1 A DA 5 1_555 A DT 4 7_555 0.194 0.084 0.174 -5.855 -17.443 8.770 5 A_DA5:DT4_A A 5 ? A 4 ? 20 1
1 A DC 6 1_555 A DG 3 7_555 -0.056 -0.396 0.316 -12.770 -9.832 -3.695 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1
1 A DG 7 1_555 A DC 2 7_555 0.040 -0.240 0.199 3.517 1.535 0.988 7 A_DG7:DC2_A A 7 ? A 2 ? 19 1
1 A DC 8 1_555 A DG 1 7_555 0.417 -0.194 -0.061 7.590 8.181 -6.276 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 7_555 A DC 2 1_555 A DG 7 7_555 0.565 -0.160 3.408 -2.733 -3.200 33.380 0.266 -1.439 3.353 -5.544 4.735
33.637 1 AA_DG1DC2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A DC 2 1_555 A DG 7 7_555 A DG 3 1_555 A DC 6 7_555 -1.026 0.915 3.064 1.156 0.606 33.937 1.476 1.929 3.044 1.038 -1.980
33.961 2 AA_DC2DG3:DC6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DG 3 1_555 A DC 6 7_555 A DT 4 1_555 A DA 5 7_555 0.655 0.402 3.655 3.710 -1.149 35.323 0.848 -0.463 3.688 -1.887 -6.091
35.530 3 AA_DG3DT4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A DT 4 1_555 A DA 5 7_555 A DA 5 1_555 A DT 4 7_555 0.000 1.775 3.707 0.000 0.366 49.270 2.098 0.000 3.719 0.439 0.000
49.271 4 AA_DT4DA5:DT4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DA 5 1_555 A DT 4 7_555 A DC 6 1_555 A DG 3 7_555 -0.655 0.402 3.655 -3.710 -1.149 35.323 0.848 0.463 3.688 -1.887 6.091
35.530 5 AA_DA5DC6:DG3DT4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A DC 6 1_555 A DG 3 7_555 A DG 7 1_555 A DC 2 7_555 1.026 0.915 3.064 -1.156 0.606 33.937 1.476 -1.929 3.044 1.038 1.980
33.961 6 AA_DC6DG7:DC2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A DG 7 1_555 A DC 2 7_555 A DC 8 1_555 A DG 1 7_555 -0.565 -0.160 3.408 2.733 -3.200 33.380 0.266 1.439 3.353 -5.544 -4.735
33.637 7 AA_DG7DC8:DG1DC2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_atom_sites.entry_id 253D
_atom_sites.fract_transf_matrix[1][1] 0.025690
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.025690
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.030280
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
MG
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 26.936 6.184 5.813 1.00 24.94 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 25.826 5.320 5.532 1.00 22.91 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 25.382 5.640 4.124 1.00 20.23 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 24.322 4.778 3.658 1.00 16.62 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 24.868 7.055 3.949 1.00 20.91 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 25.393 7.497 2.708 1.00 26.23 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 23.357 6.889 3.951 1.00 18.23 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 23.193 5.549 3.266 1.00 15.66 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 22.025 4.763 3.605 1.00 10.63 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 21.651 4.375 4.859 1.00 9.02 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 20.689 3.491 4.853 1.00 9.27 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 20.375 3.320 3.512 1.00 4.07 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 19.487 2.430 2.904 1.00 3.04 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 18.787 1.573 3.426 1.00 2.00 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 19.469 2.581 1.523 1.00 6.87 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 20.239 3.465 0.823 1.00 7.92 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 20.017 3.480 -0.495 1.00 10.63 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 21.137 4.271 1.375 1.00 6.68 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 21.146 4.146 2.726 1.00 8.36 ? 1 DG A C4 1
ATOM 20 P P . DC A 1 2 ? 25.099 8.982 2.204 1.00 30.11 ? 2 DC A P 1
ATOM 21 O OP1 . DC A 1 2 ? 26.244 9.362 1.318 1.00 32.72 ? 2 DC A OP1 1
ATOM 22 O OP2 . DC A 1 2 ? 24.734 9.846 3.363 1.00 30.45 ? 2 DC A OP2 1
ATOM 23 O "O5'" . DC A 1 2 ? 23.823 8.791 1.284 1.00 27.51 ? 2 DC A "O5'" 1
ATOM 24 C "C5'" . DC A 1 2 ? 23.822 7.767 0.312 1.00 20.35 ? 2 DC A "C5'" 1
ATOM 25 C "C4'" . DC A 1 2 ? 22.574 7.860 -0.520 1.00 17.56 ? 2 DC A "C4'" 1
ATOM 26 O "O4'" . DC A 1 2 ? 21.578 6.986 0.043 1.00 17.34 ? 2 DC A "O4'" 1
ATOM 27 C "C3'" . DC A 1 2 ? 21.927 9.240 -0.641 1.00 17.43 ? 2 DC A "C3'" 1
ATOM 28 O "O3'" . DC A 1 2 ? 21.611 9.427 -2.031 1.00 21.02 ? 2 DC A "O3'" 1
ATOM 29 C "C2'" . DC A 1 2 ? 20.691 9.117 0.222 1.00 15.06 ? 2 DC A "C2'" 1
ATOM 30 C "C1'" . DC A 1 2 ? 20.341 7.647 0.074 1.00 13.08 ? 2 DC A "C1'" 1
ATOM 31 N N1 . DC A 1 2 ? 19.583 7.083 1.172 1.00 9.33 ? 2 DC A N1 1
ATOM 32 C C2 . DC A 1 2 ? 18.547 6.223 0.905 1.00 9.00 ? 2 DC A C2 1
ATOM 33 O O2 . DC A 1 2 ? 18.304 5.964 -0.241 1.00 11.17 ? 2 DC A O2 1
ATOM 34 N N3 . DC A 1 2 ? 17.830 5.689 1.923 1.00 7.74 ? 2 DC A N3 1
ATOM 35 C C4 . DC A 1 2 ? 18.143 6.015 3.184 1.00 7.78 ? 2 DC A C4 1
ATOM 36 N N4 . DC A 1 2 ? 17.429 5.485 4.191 1.00 6.09 ? 2 DC A N4 1
ATOM 37 C C5 . DC A 1 2 ? 19.204 6.895 3.479 1.00 7.25 ? 2 DC A C5 1
ATOM 38 C C6 . DC A 1 2 ? 19.898 7.398 2.455 1.00 9.15 ? 2 DC A C6 1
ATOM 39 P P . DG A 1 3 ? 21.419 10.896 -2.664 1.00 21.52 ? 3 DG A P 1
ATOM 40 O OP1 . DG A 1 3 ? 22.602 11.242 -3.471 1.00 24.47 ? 3 DG A OP1 1
ATOM 41 O OP2 . DG A 1 3 ? 20.876 11.863 -1.694 1.00 22.20 ? 3 DG A OP2 1
ATOM 42 O "O5'" . DG A 1 3 ? 20.277 10.653 -3.726 1.00 23.03 ? 3 DG A "O5'" 1
ATOM 43 C "C5'" . DG A 1 3 ? 20.339 9.531 -4.551 1.00 21.66 ? 3 DG A "C5'" 1
ATOM 44 C "C4'" . DG A 1 3 ? 18.961 9.246 -5.081 1.00 23.64 ? 3 DG A "C4'" 1
ATOM 45 O "O4'" . DG A 1 3 ? 18.152 8.652 -4.049 1.00 19.12 ? 3 DG A "O4'" 1
ATOM 46 C "C3'" . DG A 1 3 ? 18.235 10.501 -5.538 1.00 23.59 ? 3 DG A "C3'" 1
ATOM 47 O "O3'" . DG A 1 3 ? 17.688 10.227 -6.843 1.00 30.88 ? 3 DG A "O3'" 1
ATOM 48 C "C2'" . DG A 1 3 ? 17.234 10.766 -4.419 1.00 20.96 ? 3 DG A "C2'" 1
ATOM 49 C "C1'" . DG A 1 3 ? 16.985 9.398 -3.804 1.00 16.85 ? 3 DG A "C1'" 1
ATOM 50 N N9 . DG A 1 3 ? 16.764 9.364 -2.339 1.00 13.00 ? 3 DG A N9 1
ATOM 51 C C8 . DG A 1 3 ? 17.339 10.166 -1.387 1.00 11.80 ? 3 DG A C8 1
ATOM 52 N N7 . DG A 1 3 ? 16.978 9.854 -0.166 1.00 10.58 ? 3 DG A N7 1
ATOM 53 C C5 . DG A 1 3 ? 16.117 8.783 -0.323 1.00 7.86 ? 3 DG A C5 1
ATOM 54 C C6 . DG A 1 3 ? 15.420 8.025 0.632 1.00 7.60 ? 3 DG A C6 1
ATOM 55 O O6 . DG A 1 3 ? 15.449 8.115 1.865 1.00 11.27 ? 3 DG A O6 1
ATOM 56 N N1 . DG A 1 3 ? 14.616 7.071 0.037 1.00 7.22 ? 3 DG A N1 1
ATOM 57 C C2 . DG A 1 3 ? 14.529 6.856 -1.317 1.00 5.30 ? 3 DG A C2 1
ATOM 58 N N2 . DG A 1 3 ? 13.686 5.907 -1.729 1.00 6.40 ? 3 DG A N2 1
ATOM 59 N N3 . DG A 1 3 ? 15.202 7.522 -2.205 1.00 5.09 ? 3 DG A N3 1
ATOM 60 C C4 . DG A 1 3 ? 15.959 8.477 -1.653 1.00 8.53 ? 3 DG A C4 1
ATOM 61 P P . DT A 1 4 ? 16.630 11.238 -7.523 1.00 34.26 ? 4 DT A P 1
ATOM 62 O OP1 . DT A 1 4 ? 16.764 11.193 -9.012 1.00 35.16 ? 4 DT A OP1 1
ATOM 63 O OP2 . DT A 1 4 ? 16.697 12.555 -6.802 1.00 34.65 ? 4 DT A OP2 1
ATOM 64 O "O5'" . DT A 1 4 ? 15.221 10.561 -7.192 1.00 34.82 ? 4 DT A "O5'" 1
ATOM 65 C "C5'" . DT A 1 4 ? 14.947 9.203 -7.573 1.00 31.71 ? 4 DT A "C5'" 1
ATOM 66 C "C4'" . DT A 1 4 ? 13.608 8.771 -7.025 1.00 30.64 ? 4 DT A "C4'" 1
ATOM 67 O "O4'" . DT A 1 4 ? 13.609 8.862 -5.568 1.00 30.55 ? 4 DT A "O4'" 1
ATOM 68 C "C3'" . DT A 1 4 ? 12.387 9.572 -7.503 1.00 30.35 ? 4 DT A "C3'" 1
ATOM 69 O "O3'" . DT A 1 4 ? 11.389 8.601 -7.868 1.00 31.09 ? 4 DT A "O3'" 1
ATOM 70 C "C2'" . DT A 1 4 ? 12.039 10.447 -6.299 1.00 27.52 ? 4 DT A "C2'" 1
ATOM 71 C "C1'" . DT A 1 4 ? 12.474 9.589 -5.110 1.00 25.60 ? 4 DT A "C1'" 1
ATOM 72 N N1 . DT A 1 4 ? 12.877 10.301 -3.855 1.00 21.60 ? 4 DT A N1 1
ATOM 73 C C2 . DT A 1 4 ? 12.473 9.803 -2.593 1.00 18.56 ? 4 DT A C2 1
ATOM 74 O O2 . DT A 1 4 ? 11.771 8.816 -2.409 1.00 17.45 ? 4 DT A O2 1
ATOM 75 N N3 . DT A 1 4 ? 12.933 10.503 -1.541 1.00 15.59 ? 4 DT A N3 1
ATOM 76 C C4 . DT A 1 4 ? 13.734 11.589 -1.562 1.00 18.00 ? 4 DT A C4 1
ATOM 77 O O4 . DT A 1 4 ? 14.084 12.072 -0.511 1.00 21.66 ? 4 DT A O4 1
ATOM 78 C C5 . DT A 1 4 ? 14.112 12.076 -2.870 1.00 20.07 ? 4 DT A C5 1
ATOM 79 C C7 . DT A 1 4 ? 14.985 13.281 -2.954 1.00 20.58 ? 4 DT A C7 1
ATOM 80 C C6 . DT A 1 4 ? 13.663 11.420 -3.951 1.00 19.66 ? 4 DT A C6 1
ATOM 81 P P . DA A 1 5 ? 10.013 9.037 -8.611 1.00 34.96 ? 5 DA A P 1
ATOM 82 O OP1 . DA A 1 5 ? 9.828 8.090 -9.760 1.00 31.79 ? 5 DA A OP1 1
ATOM 83 O OP2 . DA A 1 5 ? 9.934 10.520 -8.846 1.00 30.52 ? 5 DA A OP2 1
ATOM 84 O "O5'" . DA A 1 5 ? 8.938 8.587 -7.519 1.00 30.44 ? 5 DA A "O5'" 1
ATOM 85 C "C5'" . DA A 1 5 ? 9.047 7.278 -6.936 1.00 27.42 ? 5 DA A "C5'" 1
ATOM 86 C "C4'" . DA A 1 5 ? 7.989 7.070 -5.879 1.00 25.06 ? 5 DA A "C4'" 1
ATOM 87 O "O4'" . DA A 1 5 ? 8.351 7.857 -4.725 1.00 24.02 ? 5 DA A "O4'" 1
ATOM 88 C "C3'" . DA A 1 5 ? 6.593 7.530 -6.284 1.00 24.06 ? 5 DA A "C3'" 1
ATOM 89 O "O3'" . DA A 1 5 ? 5.589 6.634 -5.835 1.00 25.67 ? 5 DA A "O3'" 1
ATOM 90 C "C2'" . DA A 1 5 ? 6.435 8.893 -5.636 1.00 22.17 ? 5 DA A "C2'" 1
ATOM 91 C "C1'" . DA A 1 5 ? 7.378 8.871 -4.455 1.00 20.02 ? 5 DA A "C1'" 1
ATOM 92 N N9 . DA A 1 5 ? 8.121 10.122 -4.283 1.00 15.77 ? 5 DA A N9 1
ATOM 93 C C8 . DA A 1 5 ? 8.639 10.926 -5.269 1.00 13.47 ? 5 DA A C8 1
ATOM 94 N N7 . DA A 1 5 ? 9.361 11.921 -4.814 1.00 9.80 ? 5 DA A N7 1
ATOM 95 C C5 . DA A 1 5 ? 9.280 11.776 -3.435 1.00 11.93 ? 5 DA A C5 1
ATOM 96 C C6 . DA A 1 5 ? 9.838 12.498 -2.408 1.00 8.69 ? 5 DA A C6 1
ATOM 97 N N6 . DA A 1 5 ? 10.615 13.553 -2.626 1.00 8.96 ? 5 DA A N6 1
ATOM 98 N N1 . DA A 1 5 ? 9.576 12.101 -1.132 1.00 11.87 ? 5 DA A N1 1
ATOM 99 C C2 . DA A 1 5 ? 8.775 11.040 -0.942 1.00 12.72 ? 5 DA A C2 1
ATOM 100 N N3 . DA A 1 5 ? 8.190 10.271 -1.852 1.00 12.67 ? 5 DA A N3 1
ATOM 101 C C4 . DA A 1 5 ? 8.497 10.693 -3.091 1.00 11.84 ? 5 DA A C4 1
ATOM 102 P P . DC A 1 6 ? 4.050 7.069 -5.949 1.00 26.64 ? 6 DC A P 1
ATOM 103 O OP1 . DC A 1 6 ? 3.262 5.852 -6.229 1.00 26.34 ? 6 DC A OP1 1
ATOM 104 O OP2 . DC A 1 6 ? 3.956 8.242 -6.838 1.00 25.57 ? 6 DC A OP2 1
ATOM 105 O "O5'" . DC A 1 6 ? 3.722 7.627 -4.493 1.00 27.34 ? 6 DC A "O5'" 1
ATOM 106 C "C5'" . DC A 1 6 ? 4.451 7.147 -3.377 1.00 25.22 ? 6 DC A "C5'" 1
ATOM 107 C "C4'" . DC A 1 6 ? 3.834 7.640 -2.091 1.00 23.94 ? 6 DC A "C4'" 1
ATOM 108 O "O4'" . DC A 1 6 ? 4.548 8.799 -1.609 1.00 23.28 ? 6 DC A "O4'" 1
ATOM 109 C "C3'" . DC A 1 6 ? 2.361 8.036 -2.159 1.00 24.55 ? 6 DC A "C3'" 1
ATOM 110 O "O3'" . DC A 1 6 ? 1.718 7.512 -0.988 1.00 26.53 ? 6 DC A "O3'" 1
ATOM 111 C "C2'" . DC A 1 6 ? 2.391 9.558 -2.205 1.00 22.30 ? 6 DC A "C2'" 1
ATOM 112 C "C1'" . DC A 1 6 ? 3.673 9.916 -1.471 1.00 20.19 ? 6 DC A "C1'" 1
ATOM 113 N N1 . DC A 1 6 ? 4.385 11.084 -2.007 1.00 15.55 ? 6 DC A N1 1
ATOM 114 C C2 . DC A 1 6 ? 4.953 11.998 -1.129 1.00 12.32 ? 6 DC A C2 1
ATOM 115 O O2 . DC A 1 6 ? 4.785 11.840 0.095 1.00 7.70 ? 6 DC A O2 1
ATOM 116 N N3 . DC A 1 6 ? 5.672 13.041 -1.633 1.00 9.55 ? 6 DC A N3 1
ATOM 117 C C4 . DC A 1 6 ? 5.810 13.181 -2.943 1.00 9.62 ? 6 DC A C4 1
ATOM 118 N N4 . DC A 1 6 ? 6.520 14.196 -3.386 1.00 12.60 ? 6 DC A N4 1
ATOM 119 C C5 . DC A 1 6 ? 5.222 12.279 -3.862 1.00 11.79 ? 6 DC A C5 1
ATOM 120 C C6 . DC A 1 6 ? 4.515 11.256 -3.359 1.00 16.23 ? 6 DC A C6 1
ATOM 121 P P . DG A 1 7 ? 0.190 7.861 -0.679 1.00 27.66 ? 7 DG A P 1
ATOM 122 O OP1 . DG A 1 7 ? -0.210 6.958 0.444 1.00 30.02 ? 7 DG A OP1 1
ATOM 123 O OP2 . DG A 1 7 ? -0.615 7.878 -1.927 1.00 26.92 ? 7 DG A OP2 1
ATOM 124 O "O5'" . DG A 1 7 ? 0.300 9.309 -0.047 1.00 26.61 ? 7 DG A "O5'" 1
ATOM 125 C "C5'" . DG A 1 7 ? 1.028 9.465 1.173 1.00 24.45 ? 7 DG A "C5'" 1
ATOM 126 C "C4'" . DG A 1 7 ? 0.622 10.736 1.870 1.00 21.34 ? 7 DG A "C4'" 1
ATOM 127 O "O4'" . DG A 1 7 ? 1.375 11.819 1.283 1.00 19.68 ? 7 DG A "O4'" 1
ATOM 128 C "C3'" . DG A 1 7 ? -0.860 11.110 1.747 1.00 20.67 ? 7 DG A "C3'" 1
ATOM 129 O "O3'" . DG A 1 7 ? -1.310 11.606 3.033 1.00 22.73 ? 7 DG A "O3'" 1
ATOM 130 C "C2'" . DG A 1 7 ? -0.867 12.084 0.578 1.00 19.69 ? 7 DG A "C2'" 1
ATOM 131 C "C1'" . DG A 1 7 ? 0.501 12.743 0.660 1.00 17.66 ? 7 DG A "C1'" 1
ATOM 132 N N9 . DG A 1 7 ? 1.104 13.133 -0.603 1.00 13.53 ? 7 DG A N9 1
ATOM 133 C C8 . DG A 1 7 ? 0.835 12.670 -1.865 1.00 12.26 ? 7 DG A C8 1
ATOM 134 N N7 . DG A 1 7 ? 1.536 13.286 -2.794 1.00 11.93 ? 7 DG A N7 1
ATOM 135 C C5 . DG A 1 7 ? 2.311 14.202 -2.088 1.00 9.92 ? 7 DG A C5 1
ATOM 136 C C6 . DG A 1 7 ? 3.207 15.198 -2.532 1.00 7.26 ? 7 DG A C6 1
ATOM 137 O O6 . DG A 1 7 ? 3.517 15.499 -3.684 1.00 5.18 ? 7 DG A O6 1
ATOM 138 N N1 . DG A 1 7 ? 3.754 15.901 -1.467 1.00 4.25 ? 7 DG A N1 1
ATOM 139 C C2 . DG A 1 7 ? 3.464 15.692 -0.178 1.00 5.66 ? 7 DG A C2 1
ATOM 140 N N2 . DG A 1 7 ? 4.083 16.440 0.675 1.00 8.34 ? 7 DG A N2 1
ATOM 141 N N3 . DG A 1 7 ? 2.623 14.806 0.261 1.00 10.91 ? 7 DG A N3 1
ATOM 142 C C4 . DG A 1 7 ? 2.079 14.097 -0.742 1.00 11.54 ? 7 DG A C4 1
ATOM 143 P P . DC A 1 8 ? -2.635 12.519 3.184 1.00 24.51 ? 8 DC A P 1
ATOM 144 O OP1 . DC A 1 8 ? -3.321 11.971 4.377 1.00 27.07 ? 8 DC A OP1 1
ATOM 145 O OP2 . DC A 1 8 ? -3.392 12.709 1.921 1.00 23.85 ? 8 DC A OP2 1
ATOM 146 O "O5'" . DC A 1 8 ? -2.068 13.927 3.630 1.00 20.65 ? 8 DC A "O5'" 1
ATOM 147 C "C5'" . DC A 1 8 ? -1.020 13.977 4.542 1.00 14.64 ? 8 DC A "C5'" 1
ATOM 148 C "C4'" . DC A 1 8 ? -0.623 15.407 4.752 1.00 14.68 ? 8 DC A "C4'" 1
ATOM 149 O "O4'" . DC A 1 8 ? 0.035 15.881 3.561 1.00 16.01 ? 8 DC A "O4'" 1
ATOM 150 C "C3'" . DC A 1 8 ? -1.797 16.345 4.959 1.00 15.65 ? 8 DC A "C3'" 1
ATOM 151 O "O3'" . DC A 1 8 ? -1.311 17.402 5.798 1.00 15.19 ? 8 DC A "O3'" 1
ATOM 152 C "C2'" . DC A 1 8 ? -2.104 16.797 3.538 1.00 13.75 ? 8 DC A "C2'" 1
ATOM 153 C "C1'" . DC A 1 8 ? -0.710 16.918 2.970 1.00 12.67 ? 8 DC A "C1'" 1
ATOM 154 N N1 . DC A 1 8 ? -0.544 16.816 1.513 1.00 9.44 ? 8 DC A N1 1
ATOM 155 C C2 . DC A 1 8 ? 0.407 17.642 0.893 1.00 9.16 ? 8 DC A C2 1
ATOM 156 O O2 . DC A 1 8 ? 1.083 18.422 1.592 1.00 6.76 ? 8 DC A O2 1
ATOM 157 N N3 . DC A 1 8 ? 0.571 17.575 -0.468 1.00 11.69 ? 8 DC A N3 1
ATOM 158 C C4 . DC A 1 8 ? -0.174 16.737 -1.188 1.00 10.64 ? 8 DC A C4 1
ATOM 159 N N4 . DC A 1 8 ? -0.017 16.764 -2.500 1.00 11.31 ? 8 DC A N4 1
ATOM 160 C C5 . DC A 1 8 ? -1.132 15.858 -0.581 1.00 9.67 ? 8 DC A C5 1
ATOM 161 C C6 . DC A 1 8 ? -1.284 15.935 0.769 1.00 11.22 ? 8 DC A C6 1
ATOM 162 P P . DG A 1 9 ? -2.319 18.259 6.699 1.00 19.07 ? 9 DG A P 1
ATOM 163 O OP1 . DG A 1 9 ? -1.512 19.132 7.630 1.00 14.01 ? 9 DG A OP1 1
ATOM 164 O OP2 . DG A 1 9 ? -3.333 17.316 7.255 1.00 14.91 ? 9 DG A OP2 1
ATOM 165 O "O5'" . DG A 1 9 ? -2.972 19.211 5.612 1.00 15.25 ? 9 DG A "O5'" 1
ATOM 166 C "C5'" . DG A 1 9 ? -2.142 20.098 4.872 1.00 15.19 ? 9 DG A "C5'" 1
ATOM 167 C "C4'" . DG A 1 9 ? -2.998 20.948 3.977 1.00 11.87 ? 9 DG A "C4'" 1
ATOM 168 O "O4'" . DG A 1 9 ? -3.784 19.980 3.269 1.00 9.67 ? 9 DG A "O4'" 1
ATOM 169 C "C3'" . DG A 1 9 ? -3.977 21.841 4.745 1.00 12.82 ? 9 DG A "C3'" 1
ATOM 170 O "O3'" . DG A 1 9 ? -3.997 23.262 4.481 1.00 15.25 ? 9 DG A "O3'" 1
ATOM 171 C "C2'" . DG A 1 9 ? -5.324 21.160 4.615 1.00 10.16 ? 9 DG A "C2'" 1
ATOM 172 C "C1'" . DG A 1 9 ? -5.160 20.109 3.545 1.00 9.37 ? 9 DG A "C1'" 1
ATOM 173 N N9 . DG A 1 9 ? -5.599 18.819 3.981 1.00 9.63 ? 9 DG A N9 1
ATOM 174 C C8 . DG A 1 9 ? -6.247 18.522 5.142 1.00 8.32 ? 9 DG A C8 1
ATOM 175 N N7 . DG A 1 9 ? -6.509 17.249 5.260 1.00 10.19 ? 9 DG A N7 1
ATOM 176 C C5 . DG A 1 9 ? -6.009 16.675 4.095 1.00 9.01 ? 9 DG A C5 1
ATOM 177 C C6 . DG A 1 9 ? -5.950 15.299 3.675 1.00 12.59 ? 9 DG A C6 1
ATOM 178 O O6 . DG A 1 9 ? -6.415 14.265 4.253 1.00 11.97 ? 9 DG A O6 1
ATOM 179 N N1 . DG A 1 9 ? -5.274 15.175 2.464 1.00 11.27 ? 9 DG A N1 1
ATOM 180 C C2 . DG A 1 9 ? -4.738 16.222 1.763 1.00 10.40 ? 9 DG A C2 1
ATOM 181 N N2 . DG A 1 9 ? -4.153 15.925 0.610 1.00 11.71 ? 9 DG A N2 1
ATOM 182 N N3 . DG A 1 9 ? -4.774 17.473 2.153 1.00 9.04 ? 9 DG A N3 1
ATOM 183 C C4 . DG A 1 9 ? -5.428 17.628 3.308 1.00 8.73 ? 9 DG A C4 1
HETATM 184 MG MG . MG B 2 . ? 0.000 19.428 9.372 0.50 20.30 ? 10 MG A MG 1
HETATM 185 O O . HOH C 3 . ? 26.429 3.286 3.239 1.00 27.10 ? 11 HOH A O 1
HETATM 186 O O . HOH C 3 . ? 27.454 10.602 4.095 1.00 14.21 ? 12 HOH A O 1
HETATM 187 O O . HOH C 3 . ? 26.222 12.693 0.000 0.50 75.80 ? 13 HOH A O 1
HETATM 188 O O . HOH C 3 . ? 18.148 4.834 7.522 1.00 28.76 ? 14 HOH A O 1
HETATM 189 O O . HOH C 3 . ? 25.411 11.316 -2.887 1.00 80.41 ? 15 HOH A O 1
HETATM 190 O O . HOH C 3 . ? 16.352 9.517 3.361 1.00 18.47 ? 16 HOH A O 1
HETATM 191 O O . HOH C 3 . ? 19.306 12.225 -9.644 1.00 77.06 ? 17 HOH A O 1
HETATM 192 O O . HOH C 3 . ? 15.842 12.790 1.693 1.00 5.82 ? 18 HOH A O 1
HETATM 193 O O . HOH C 3 . ? 10.566 13.936 -5.544 1.00 33.01 ? 19 HOH A O 1
HETATM 194 O O . HOH C 3 . ? 2.554 7.720 -8.506 1.00 43.49 ? 20 HOH A O 1
HETATM 195 O O . HOH C 3 . ? 3.096 12.173 3.779 1.00 24.42 ? 21 HOH A O 1
HETATM 196 O O . HOH C 3 . ? -6.287 10.699 2.119 1.00 32.92 ? 22 HOH A O 1
HETATM 197 O O . HOH C 3 . ? 31.545 7.415 -3.188 1.00 37.06 ? 23 HOH A O 1
HETATM 198 O O . HOH C 3 . ? 1.720 4.290 -10.051 1.00 58.58 ? 24 HOH A O 1
HETATM 199 O O . HOH C 3 . ? -2.991 22.107 8.899 1.00 26.74 ? 25 HOH A O 1
HETATM 200 O O . HOH C 3 . ? -4.652 16.180 8.791 1.00 21.38 ? 26 HOH A O 1
HETATM 201 O O . HOH C 3 . ? -2.299 24.274 7.171 1.00 42.65 ? 27 HOH A O 1
HETATM 202 O O . HOH C 3 . ? 17.030 17.030 0.000 0.50 82.68 ? 28 HOH A O 1
HETATM 203 O O . HOH C 3 . ? 15.138 16.386 -5.918 1.00 44.56 ? 29 HOH A O 1
HETATM 204 O O . HOH C 3 . ? -9.104 13.708 5.200 1.00 28.18 ? 30 HOH A O 1
HETATM 205 O O . HOH C 3 . ? -7.489 18.292 8.224 1.00 31.97 ? 31 HOH A O 1
HETATM 206 O O . HOH C 3 . ? 13.760 15.319 -8.351 1.00 38.42 ? 32 HOH A O 1
HETATM 207 O O . HOH C 3 . ? 22.220 17.375 -13.695 1.00 70.09 ? 33 HOH A O 1
HETATM 208 O O . HOH C 3 . ? 23.012 17.726 -3.853 1.00 61.20 ? 34 HOH A O 1
HETATM 209 O O . HOH C 3 . ? -0.139 3.921 -4.502 1.00 58.52 ? 35 HOH A O 1
HETATM 210 O O . HOH C 3 . ? 0.000 0.000 0.000 0.25 72.26 ? 36 HOH A O 1
HETATM 211 O O . HOH C 3 . ? 5.293 2.964 -3.405 1.00 67.58 ? 37 HOH A O 1
HETATM 212 O O . HOH C 3 . ? 0.701 17.412 9.137 1.00 19.34 ? 38 HOH A O 1
HETATM 213 O O . HOH C 3 . ? -1.700 18.458 10.324 1.00 21.09 ? 39 HOH A O 1
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