data_236D
#
_entry.id 236D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 236D pdb_0000236d 10.2210/pdb236d/pdb
RCSB DDF056 ? ?
WWPDB D_1000177623 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1996-01-31
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 236D
_pdbx_database_status.recvd_initial_deposition_date 1995-06-22
_pdbx_database_status.deposit_site BNL
_pdbx_database_status.process_site NDB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Gao, Y.-G.' 1
'Wang, A.H.-J.' 2
#
_citation.id primary
_citation.title
;Crystal structures of four morpholino-doxorubicin anticancer drugs complexed with d(CGTACG) and d(CGATCG): implications in drug-DNA crosslink.
;
_citation.journal_abbrev J.Biomol.Struct.Dyn.
_citation.journal_volume 13
_citation.page_first 103
_citation.page_last 117
_citation.year 1995
_citation.journal_id_ASTM JBSDD6
_citation.country US
_citation.journal_id_ISSN 0739-1102
_citation.journal_id_CSD 0646
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 8527023
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Gao, Y.G.' 1 ?
primary 'Wang, A.H.' 2 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
;
1809.217 1 ? ? ? ?
2 non-polymer syn "3'-DESAMINO-3'-(3-CYANO-4-MORPHOLINYL)-DOXORUBICIN" 638.619 1 ? ? ? ?
3 water nat water 18.015 61 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGATCG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 "3'-DESAMINO-3'-(3-CYANO-4-MORPHOLINYL)-DOXORUBICIN" CMD
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DA n
1 4 DT n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
CMD non-polymer . "3'-DESAMINO-3'-(3-CYANO-4-MORPHOLINYL)-DOXORUBICIN" ? 'C32 H34 N2 O12' 638.619
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DA 3 3 3 DA A A . n
A 1 4 DT 4 4 4 DT T A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CMD 1 7 7 CMD CMD A .
C 3 HOH 1 8 8 HOH HOH A .
C 3 HOH 2 9 9 HOH HOH A .
C 3 HOH 3 10 10 HOH HOH A .
C 3 HOH 4 11 11 HOH HOH A .
C 3 HOH 5 12 12 HOH HOH A .
C 3 HOH 6 13 13 HOH HOH A .
C 3 HOH 7 14 14 HOH HOH A .
C 3 HOH 8 15 15 HOH HOH A .
C 3 HOH 9 16 16 HOH HOH A .
C 3 HOH 10 17 17 HOH HOH A .
C 3 HOH 11 18 18 HOH HOH A .
C 3 HOH 12 19 19 HOH HOH A .
C 3 HOH 13 20 20 HOH HOH A .
C 3 HOH 14 21 21 HOH HOH A .
C 3 HOH 15 22 22 HOH HOH A .
C 3 HOH 16 23 23 HOH HOH A .
C 3 HOH 17 24 24 HOH HOH A .
C 3 HOH 18 25 25 HOH HOH A .
C 3 HOH 19 26 26 HOH HOH A .
C 3 HOH 20 27 27 HOH HOH A .
C 3 HOH 21 28 28 HOH HOH A .
C 3 HOH 22 29 29 HOH HOH A .
C 3 HOH 23 30 30 HOH HOH A .
C 3 HOH 24 31 31 HOH HOH A .
C 3 HOH 25 32 32 HOH HOH A .
C 3 HOH 26 33 33 HOH HOH A .
C 3 HOH 27 34 34 HOH HOH A .
C 3 HOH 28 35 35 HOH HOH A .
C 3 HOH 29 36 36 HOH HOH A .
C 3 HOH 30 37 37 HOH HOH A .
C 3 HOH 31 38 38 HOH HOH A .
C 3 HOH 32 39 39 HOH HOH A .
C 3 HOH 33 40 40 HOH HOH A .
C 3 HOH 34 41 41 HOH HOH A .
C 3 HOH 35 42 42 HOH HOH A .
C 3 HOH 36 43 43 HOH HOH A .
C 3 HOH 37 44 44 HOH HOH A .
C 3 HOH 38 45 45 HOH HOH A .
C 3 HOH 39 46 46 HOH HOH A .
C 3 HOH 40 47 47 HOH HOH A .
C 3 HOH 41 48 48 HOH HOH A .
C 3 HOH 42 49 49 HOH HOH A .
C 3 HOH 43 50 50 HOH HOH A .
C 3 HOH 44 51 51 HOH HOH A .
C 3 HOH 45 52 52 HOH HOH A .
C 3 HOH 46 53 53 HOH HOH A .
C 3 HOH 47 54 54 HOH HOH A .
C 3 HOH 48 55 55 HOH HOH A .
C 3 HOH 49 56 56 HOH HOH A .
C 3 HOH 50 57 57 HOH HOH A .
C 3 HOH 51 58 58 HOH HOH A .
C 3 HOH 52 59 59 HOH HOH A .
C 3 HOH 53 60 60 HOH HOH A .
C 3 HOH 54 61 61 HOH HOH A .
C 3 HOH 55 62 62 HOH HOH A .
C 3 HOH 56 63 63 HOH HOH A .
C 3 HOH 57 64 64 HOH HOH A .
C 3 HOH 58 65 65 HOH HOH A .
C 3 HOH 59 66 66 HOH HOH A .
C 3 HOH 60 67 67 HOH HOH A .
C 3 HOH 61 68 68 HOH HOH A .
#
_software.name NUCLSQ
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 236D
_cell.length_a 28.186
_cell.length_b 28.186
_cell.length_c 53.352
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 236D
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 92
#
_exptl.entry_id 236D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.93
_exptl_crystal.density_percent_sol 58.00
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH 6.00
_exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 BACL2 ? ? ?
1 4 1 'NA CACODYLATE' ? ? ?
1 5 1 SPERMINE ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 298.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'RIGAKU AFC-5'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type RIGAKU
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 236D
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high 1.700
_reflns.number_obs ?
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 236D
_refine.ls_number_reflns_obs 1652
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 1.800
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.2190000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 46
_refine_hist.number_atoms_solvent 61
_refine_hist.number_atoms_total 227
_refine_hist.d_res_high 1.800
_refine_hist.d_res_low .
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
n_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ?
n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 236D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 236D
_struct.title
;CRYSTAL STRUCTURE OF FOUR MORPHOLINO-DOXORUBICIN ANTICANCER DRUGS COMPLEXED WITH D(CGTACG) AND D(CGATCG): IMPLICATIONS IN DRUG-DNA CROSSLINK
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 236D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 236D
_struct_ref.pdbx_db_accession 236D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 236D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 236D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.1860000000 -1.0000000000
0.0000000000 0.0000000000 28.1860000000 0.0000000000 0.0000000000 -1.0000000000 26.6760000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A CMD 7 ? 10 'BINDING SITE FOR RESIDUE CMD A 7'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 10 DC A 1 ? DC A 1 . ? 8_665 ?
2 AC1 10 DG A 2 ? DG A 2 . ? 8_665 ?
3 AC1 10 DA A 3 ? DA A 3 . ? 8_665 ?
4 AC1 10 DT A 4 ? DT A 4 . ? 1_555 ?
5 AC1 10 DT A 4 ? DT A 4 . ? 8_665 ?
6 AC1 10 DC A 5 ? DC A 5 . ? 1_555 ?
7 AC1 10 DG A 6 ? DG A 6 . ? 1_555 ?
8 AC1 10 HOH C . ? HOH A 43 . ? 1_555 ?
9 AC1 10 HOH C . ? HOH A 58 . ? 5_545 ?
10 AC1 10 HOH C . ? HOH A 61 . ? 1_555 ?
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 O
_pdbx_validate_symm_contact.auth_asym_id_1 A
_pdbx_validate_symm_contact.auth_comp_id_1 HOH
_pdbx_validate_symm_contact.auth_seq_id_1 67
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 O
_pdbx_validate_symm_contact.auth_asym_id_2 A
_pdbx_validate_symm_contact.auth_comp_id_2 HOH
_pdbx_validate_symm_contact.auth_seq_id_2 67
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 7_555
_pdbx_validate_symm_contact.dist 1.60
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 P
_pdbx_validate_rmsd_bond.auth_asym_id_1 A
_pdbx_validate_rmsd_bond.auth_comp_id_1 DC
_pdbx_validate_rmsd_bond.auth_seq_id_1 5
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 "O5'"
_pdbx_validate_rmsd_bond.auth_asym_id_2 A
_pdbx_validate_rmsd_bond.auth_comp_id_2 DC
_pdbx_validate_rmsd_bond.auth_seq_id_2 5
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.659
_pdbx_validate_rmsd_bond.bond_target_value 1.593
_pdbx_validate_rmsd_bond.bond_deviation 0.066
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.010
_pdbx_validate_rmsd_bond.linker_flag N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 118.52 121.90 -3.38 0.40 N
2 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.55 118.90 3.65 0.60 N
3 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP1 A DG 2 ? ? 120.32 110.70 9.62 1.20 N
4 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 96.34 102.40 -6.06 0.80 N
5 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 114.92 108.30 6.62 0.30 N
6 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 123.46 116.20 7.26 0.90 N
7 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 113.03 119.90 -6.87 0.70 N
8 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 123.68 128.60 -4.92 0.60 N
9 1 "O5'" A DA 3 ? ? P A DA 3 ? ? OP1 A DA 3 ? ? 118.67 110.70 7.97 1.20 N
10 1 C6 A DA 3 ? ? N1 A DA 3 ? ? C2 A DA 3 ? ? 125.05 118.60 6.45 0.60 N
11 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 123.89 129.30 -5.41 0.50 N
12 1 C5 A DA 3 ? ? C6 A DA 3 ? ? N1 A DA 3 ? ? 113.24 117.70 -4.46 0.50 N
13 1 "O5'" A DT 4 ? ? P A DT 4 ? ? OP1 A DT 4 ? ? 122.70 110.70 12.00 1.20 N
14 1 "C3'" A DT 4 ? ? "O3'" A DT 4 ? ? P A DC 5 ? ? 132.31 119.70 12.61 1.20 Y
15 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 102.78 109.40 -6.62 0.80 N
16 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 96.82 102.40 -5.58 0.80 N
17 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 118.62 108.30 10.32 0.30 N
18 1 C2 A DC 5 ? ? N3 A DC 5 ? ? C4 A DC 5 ? ? 123.39 119.90 3.49 0.50 N
19 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 101.69 104.50 -2.81 0.40 N
20 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.25 108.30 2.95 0.30 N
21 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 115.16 111.50 3.66 0.50 N
22 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 115.58 119.90 -4.32 0.70 N
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text INTERCALATION
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
CMD C1 C Y N 1
CMD C2 C Y N 2
CMD C3 C Y N 3
CMD C4 C Y N 4
CMD O4 O N N 5
CMD C5 C Y N 6
CMD C6 C N N 7
CMD O6 O N N 8
CMD C7 C Y N 9
CMD C8 C Y N 10
CMD O8 O N N 11
CMD C9 C Y N 12
CMD C10 C N S 13
CMD O10 O N N 14
CMD C11 C N N 15
CMD C12 C N S 16
CMD O12 O N N 17
CMD C13 C N N 18
CMD O13 O N N 19
CMD C14 C N N 20
CMD O14 O N N 21
CMD C15 C N N 22
CMD C16 C Y N 23
CMD C17 C Y N 24
CMD O17 O N N 25
CMD C18 C Y N 26
CMD C19 C N N 27
CMD O19 O N N 28
CMD C20 C Y N 29
CMD C21 C N N 30
CMD "C1'" C N R 31
CMD "C2'" C N N 32
CMD "C3'" C N S 33
CMD "C4'" C N S 34
CMD "O4'" O N N 35
CMD "C5'" C N S 36
CMD "O5'" O N N 37
CMD "C6'" C N N 38
CMD "N3'" N N N 39
CMD C33 C N S 40
CMD C23 C N N 41
CMD O16 O N N 42
CMD C63 C N N 43
CMD C53 C N N 44
CMD C73 C N N 45
CMD N73 N N N 46
CMD H1 H N N 47
CMD H2 H N N 48
CMD H3 H N N 49
CMD HO8 H N N 50
CMD H10 H N N 51
CMD H111 H N N 52
CMD H112 H N N 53
CMD HO12 H N N 54
CMD H141 H N N 55
CMD H142 H N N 56
CMD HO14 H N N 57
CMD H151 H N N 58
CMD H152 H N N 59
CMD HO17 H N N 60
CMD H211 H N N 61
CMD H212 H N N 62
CMD H213 H N N 63
CMD "H1'" H N N 64
CMD "H2'1" H N N 65
CMD "H2'2" H N N 66
CMD "H3'" H N N 67
CMD "H4'" H N N 68
CMD "HO4'" H N N 69
CMD "H5'" H N N 70
CMD "H6'1" H N N 71
CMD "H6'2" H N N 72
CMD "H6'3" H N N 73
CMD H33 H N N 74
CMD H231 H N N 75
CMD H232 H N N 76
CMD H631 H N N 77
CMD H632 H N N 78
CMD H531 H N N 79
CMD H532 H N N 80
DA OP3 O N N 81
DA P P N N 82
DA OP1 O N N 83
DA OP2 O N N 84
DA "O5'" O N N 85
DA "C5'" C N N 86
DA "C4'" C N R 87
DA "O4'" O N N 88
DA "C3'" C N S 89
DA "O3'" O N N 90
DA "C2'" C N N 91
DA "C1'" C N R 92
DA N9 N Y N 93
DA C8 C Y N 94
DA N7 N Y N 95
DA C5 C Y N 96
DA C6 C Y N 97
DA N6 N N N 98
DA N1 N Y N 99
DA C2 C Y N 100
DA N3 N Y N 101
DA C4 C Y N 102
DA HOP3 H N N 103
DA HOP2 H N N 104
DA "H5'" H N N 105
DA "H5''" H N N 106
DA "H4'" H N N 107
DA "H3'" H N N 108
DA "HO3'" H N N 109
DA "H2'" H N N 110
DA "H2''" H N N 111
DA "H1'" H N N 112
DA H8 H N N 113
DA H61 H N N 114
DA H62 H N N 115
DA H2 H N N 116
DC OP3 O N N 117
DC P P N N 118
DC OP1 O N N 119
DC OP2 O N N 120
DC "O5'" O N N 121
DC "C5'" C N N 122
DC "C4'" C N R 123
DC "O4'" O N N 124
DC "C3'" C N S 125
DC "O3'" O N N 126
DC "C2'" C N N 127
DC "C1'" C N R 128
DC N1 N N N 129
DC C2 C N N 130
DC O2 O N N 131
DC N3 N N N 132
DC C4 C N N 133
DC N4 N N N 134
DC C5 C N N 135
DC C6 C N N 136
DC HOP3 H N N 137
DC HOP2 H N N 138
DC "H5'" H N N 139
DC "H5''" H N N 140
DC "H4'" H N N 141
DC "H3'" H N N 142
DC "HO3'" H N N 143
DC "H2'" H N N 144
DC "H2''" H N N 145
DC "H1'" H N N 146
DC H41 H N N 147
DC H42 H N N 148
DC H5 H N N 149
DC H6 H N N 150
DG OP3 O N N 151
DG P P N N 152
DG OP1 O N N 153
DG OP2 O N N 154
DG "O5'" O N N 155
DG "C5'" C N N 156
DG "C4'" C N R 157
DG "O4'" O N N 158
DG "C3'" C N S 159
DG "O3'" O N N 160
DG "C2'" C N N 161
DG "C1'" C N R 162
DG N9 N Y N 163
DG C8 C Y N 164
DG N7 N Y N 165
DG C5 C Y N 166
DG C6 C N N 167
DG O6 O N N 168
DG N1 N N N 169
DG C2 C N N 170
DG N2 N N N 171
DG N3 N N N 172
DG C4 C Y N 173
DG HOP3 H N N 174
DG HOP2 H N N 175
DG "H5'" H N N 176
DG "H5''" H N N 177
DG "H4'" H N N 178
DG "H3'" H N N 179
DG "HO3'" H N N 180
DG "H2'" H N N 181
DG "H2''" H N N 182
DG "H1'" H N N 183
DG H8 H N N 184
DG H1 H N N 185
DG H21 H N N 186
DG H22 H N N 187
DT OP3 O N N 188
DT P P N N 189
DT OP1 O N N 190
DT OP2 O N N 191
DT "O5'" O N N 192
DT "C5'" C N N 193
DT "C4'" C N R 194
DT "O4'" O N N 195
DT "C3'" C N S 196
DT "O3'" O N N 197
DT "C2'" C N N 198
DT "C1'" C N R 199
DT N1 N N N 200
DT C2 C N N 201
DT O2 O N N 202
DT N3 N N N 203
DT C4 C N N 204
DT O4 O N N 205
DT C5 C N N 206
DT C7 C N N 207
DT C6 C N N 208
DT HOP3 H N N 209
DT HOP2 H N N 210
DT "H5'" H N N 211
DT "H5''" H N N 212
DT "H4'" H N N 213
DT "H3'" H N N 214
DT "HO3'" H N N 215
DT "H2'" H N N 216
DT "H2''" H N N 217
DT "H1'" H N N 218
DT H3 H N N 219
DT H71 H N N 220
DT H72 H N N 221
DT H73 H N N 222
DT H6 H N N 223
HOH O O N N 224
HOH H1 H N N 225
HOH H2 H N N 226
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CMD C1 C2 doub Y N 1
CMD C1 C20 sing Y N 2
CMD C1 H1 sing N N 3
CMD C2 C3 sing Y N 4
CMD C2 H2 sing N N 5
CMD C3 C4 doub Y N 6
CMD C3 H3 sing N N 7
CMD C4 O4 sing N N 8
CMD C4 C5 sing Y N 9
CMD O4 C21 sing N N 10
CMD C5 C6 sing N N 11
CMD C5 C20 doub Y N 12
CMD C6 O6 doub N N 13
CMD C6 C7 sing N N 14
CMD C7 C8 doub Y N 15
CMD C7 C18 sing Y N 16
CMD C8 O8 sing N N 17
CMD C8 C9 sing Y N 18
CMD O8 HO8 sing N N 19
CMD C9 C10 sing N N 20
CMD C9 C16 doub Y N 21
CMD C10 O10 sing N N 22
CMD C10 C11 sing N N 23
CMD C10 H10 sing N N 24
CMD O10 "C1'" sing N N 25
CMD C11 C12 sing N N 26
CMD C11 H111 sing N N 27
CMD C11 H112 sing N N 28
CMD C12 O12 sing N N 29
CMD C12 C13 sing N N 30
CMD C12 C15 sing N N 31
CMD O12 HO12 sing N N 32
CMD C13 O13 doub N N 33
CMD C13 C14 sing N N 34
CMD C14 O14 sing N N 35
CMD C14 H141 sing N N 36
CMD C14 H142 sing N N 37
CMD O14 HO14 sing N N 38
CMD C15 C16 sing N N 39
CMD C15 H151 sing N N 40
CMD C15 H152 sing N N 41
CMD C16 C17 sing Y N 42
CMD C17 O17 sing N N 43
CMD C17 C18 doub Y N 44
CMD O17 HO17 sing N N 45
CMD C18 C19 sing N N 46
CMD C19 O19 doub N N 47
CMD C19 C20 sing N N 48
CMD C21 H211 sing N N 49
CMD C21 H212 sing N N 50
CMD C21 H213 sing N N 51
CMD "C1'" "C2'" sing N N 52
CMD "C1'" "O5'" sing N N 53
CMD "C1'" "H1'" sing N N 54
CMD "C2'" "C3'" sing N N 55
CMD "C2'" "H2'1" sing N N 56
CMD "C2'" "H2'2" sing N N 57
CMD "C3'" "C4'" sing N N 58
CMD "C3'" "N3'" sing N N 59
CMD "C3'" "H3'" sing N N 60
CMD "C4'" "O4'" sing N N 61
CMD "C4'" "C5'" sing N N 62
CMD "C4'" "H4'" sing N N 63
CMD "O4'" "HO4'" sing N N 64
CMD "C5'" "O5'" sing N N 65
CMD "C5'" "C6'" sing N N 66
CMD "C5'" "H5'" sing N N 67
CMD "C6'" "H6'1" sing N N 68
CMD "C6'" "H6'2" sing N N 69
CMD "C6'" "H6'3" sing N N 70
CMD "N3'" C33 sing N N 71
CMD "N3'" C53 sing N N 72
CMD C33 C23 sing N N 73
CMD C33 C73 sing N N 74
CMD C33 H33 sing N N 75
CMD C23 O16 sing N N 76
CMD C23 H231 sing N N 77
CMD C23 H232 sing N N 78
CMD O16 C63 sing N N 79
CMD C63 C53 sing N N 80
CMD C63 H631 sing N N 81
CMD C63 H632 sing N N 82
CMD C53 H531 sing N N 83
CMD C53 H532 sing N N 84
CMD C73 N73 trip N N 85
DA OP3 P sing N N 86
DA OP3 HOP3 sing N N 87
DA P OP1 doub N N 88
DA P OP2 sing N N 89
DA P "O5'" sing N N 90
DA OP2 HOP2 sing N N 91
DA "O5'" "C5'" sing N N 92
DA "C5'" "C4'" sing N N 93
DA "C5'" "H5'" sing N N 94
DA "C5'" "H5''" sing N N 95
DA "C4'" "O4'" sing N N 96
DA "C4'" "C3'" sing N N 97
DA "C4'" "H4'" sing N N 98
DA "O4'" "C1'" sing N N 99
DA "C3'" "O3'" sing N N 100
DA "C3'" "C2'" sing N N 101
DA "C3'" "H3'" sing N N 102
DA "O3'" "HO3'" sing N N 103
DA "C2'" "C1'" sing N N 104
DA "C2'" "H2'" sing N N 105
DA "C2'" "H2''" sing N N 106
DA "C1'" N9 sing N N 107
DA "C1'" "H1'" sing N N 108
DA N9 C8 sing Y N 109
DA N9 C4 sing Y N 110
DA C8 N7 doub Y N 111
DA C8 H8 sing N N 112
DA N7 C5 sing Y N 113
DA C5 C6 sing Y N 114
DA C5 C4 doub Y N 115
DA C6 N6 sing N N 116
DA C6 N1 doub Y N 117
DA N6 H61 sing N N 118
DA N6 H62 sing N N 119
DA N1 C2 sing Y N 120
DA C2 N3 doub Y N 121
DA C2 H2 sing N N 122
DA N3 C4 sing Y N 123
DC OP3 P sing N N 124
DC OP3 HOP3 sing N N 125
DC P OP1 doub N N 126
DC P OP2 sing N N 127
DC P "O5'" sing N N 128
DC OP2 HOP2 sing N N 129
DC "O5'" "C5'" sing N N 130
DC "C5'" "C4'" sing N N 131
DC "C5'" "H5'" sing N N 132
DC "C5'" "H5''" sing N N 133
DC "C4'" "O4'" sing N N 134
DC "C4'" "C3'" sing N N 135
DC "C4'" "H4'" sing N N 136
DC "O4'" "C1'" sing N N 137
DC "C3'" "O3'" sing N N 138
DC "C3'" "C2'" sing N N 139
DC "C3'" "H3'" sing N N 140
DC "O3'" "HO3'" sing N N 141
DC "C2'" "C1'" sing N N 142
DC "C2'" "H2'" sing N N 143
DC "C2'" "H2''" sing N N 144
DC "C1'" N1 sing N N 145
DC "C1'" "H1'" sing N N 146
DC N1 C2 sing N N 147
DC N1 C6 sing N N 148
DC C2 O2 doub N N 149
DC C2 N3 sing N N 150
DC N3 C4 doub N N 151
DC C4 N4 sing N N 152
DC C4 C5 sing N N 153
DC N4 H41 sing N N 154
DC N4 H42 sing N N 155
DC C5 C6 doub N N 156
DC C5 H5 sing N N 157
DC C6 H6 sing N N 158
DG OP3 P sing N N 159
DG OP3 HOP3 sing N N 160
DG P OP1 doub N N 161
DG P OP2 sing N N 162
DG P "O5'" sing N N 163
DG OP2 HOP2 sing N N 164
DG "O5'" "C5'" sing N N 165
DG "C5'" "C4'" sing N N 166
DG "C5'" "H5'" sing N N 167
DG "C5'" "H5''" sing N N 168
DG "C4'" "O4'" sing N N 169
DG "C4'" "C3'" sing N N 170
DG "C4'" "H4'" sing N N 171
DG "O4'" "C1'" sing N N 172
DG "C3'" "O3'" sing N N 173
DG "C3'" "C2'" sing N N 174
DG "C3'" "H3'" sing N N 175
DG "O3'" "HO3'" sing N N 176
DG "C2'" "C1'" sing N N 177
DG "C2'" "H2'" sing N N 178
DG "C2'" "H2''" sing N N 179
DG "C1'" N9 sing N N 180
DG "C1'" "H1'" sing N N 181
DG N9 C8 sing Y N 182
DG N9 C4 sing Y N 183
DG C8 N7 doub Y N 184
DG C8 H8 sing N N 185
DG N7 C5 sing Y N 186
DG C5 C6 sing N N 187
DG C5 C4 doub Y N 188
DG C6 O6 doub N N 189
DG C6 N1 sing N N 190
DG N1 C2 sing N N 191
DG N1 H1 sing N N 192
DG C2 N2 sing N N 193
DG C2 N3 doub N N 194
DG N2 H21 sing N N 195
DG N2 H22 sing N N 196
DG N3 C4 sing N N 197
DT OP3 P sing N N 198
DT OP3 HOP3 sing N N 199
DT P OP1 doub N N 200
DT P OP2 sing N N 201
DT P "O5'" sing N N 202
DT OP2 HOP2 sing N N 203
DT "O5'" "C5'" sing N N 204
DT "C5'" "C4'" sing N N 205
DT "C5'" "H5'" sing N N 206
DT "C5'" "H5''" sing N N 207
DT "C4'" "O4'" sing N N 208
DT "C4'" "C3'" sing N N 209
DT "C4'" "H4'" sing N N 210
DT "O4'" "C1'" sing N N 211
DT "C3'" "O3'" sing N N 212
DT "C3'" "C2'" sing N N 213
DT "C3'" "H3'" sing N N 214
DT "O3'" "HO3'" sing N N 215
DT "C2'" "C1'" sing N N 216
DT "C2'" "H2'" sing N N 217
DT "C2'" "H2''" sing N N 218
DT "C1'" N1 sing N N 219
DT "C1'" "H1'" sing N N 220
DT N1 C2 sing N N 221
DT N1 C6 sing N N 222
DT C2 O2 doub N N 223
DT C2 N3 sing N N 224
DT N3 C4 sing N N 225
DT N3 H3 sing N N 226
DT C4 O4 doub N N 227
DT C4 C5 sing N N 228
DT C5 C7 sing N N 229
DT C5 C6 doub N N 230
DT C7 H71 sing N N 231
DT C7 H72 sing N N 232
DT C7 H73 sing N N 233
DT C6 H6 sing N N 234
HOH O H1 sing N N 235
HOH O H2 sing N N 236
#
_ndb_struct_conf_na.entry_id 236D
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 8_665 0.114 -0.138 0.095 7.154 -0.087 -0.379 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 8_665 -0.075 -0.324 -0.153 -13.543 1.607 0.306 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DA 3 1_555 A DT 4 8_665 0.318 -0.153 -0.193 -9.483 -1.999 3.796 3 A_DA3:DT4_A A 3 ? A 4 ? 20 1
1 A DT 4 1_555 A DA 3 8_665 -0.318 -0.153 -0.193 9.483 -1.999 3.796 4 A_DT4:DA3_A A 4 ? A 3 ? 20 1
1 A DC 5 1_555 A DG 2 8_665 0.075 -0.324 -0.153 13.543 1.607 0.306 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 8_665 -0.114 -0.138 0.095 -7.154 -0.087 -0.379 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.151 0.936 7.012 1.891 -3.157 36.161 2.443 -1.281 6.958 -5.070 -3.037
36.341 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 8_665 A DA 3 1_555 A DT 4 8_665 -1.019 0.458 3.367 -1.843 2.120 32.936 0.432 1.466 3.439 3.731 3.243
33.052 2 AA_DG2DA3:DT4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DA 3 1_555 A DT 4 8_665 A DT 4 1_555 A DA 3 8_665 0.000 -0.286 2.977 0.000 3.660 26.384 -1.488 0.000 2.912 7.971 0.000
26.632 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DT 4 1_555 A DA 3 8_665 A DC 5 1_555 A DG 2 8_665 1.019 0.458 3.367 1.843 2.120 32.936 0.432 -1.466 3.439 3.731 -3.243
33.052 4 AA_DT4DC5:DG2DA3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.151 0.936 7.012 -1.891 -3.157 36.161 2.443 1.281 6.958 -5.070 3.037
36.341 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_atom_sites.entry_id 236D
_atom_sites.fract_transf_matrix[1][1] 0.035479
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.035479
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.018743
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 9.487 20.376 23.208 1.00 11.28 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 10.082 21.588 23.731 1.00 11.04 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 11.475 21.187 24.200 1.00 11.02 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 11.435 20.023 24.958 1.00 10.67 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 12.461 20.953 23.048 1.00 10.97 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 13.557 21.853 23.192 1.00 11.85 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 12.895 19.519 23.213 1.00 10.70 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 12.579 19.203 24.670 1.00 10.25 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 12.179 17.794 24.777 1.00 9.88 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 13.149 16.833 24.894 1.00 9.54 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 14.341 17.106 24.979 1.00 9.32 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 12.754 15.525 24.947 1.00 9.30 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 11.469 15.150 24.889 1.00 9.48 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 11.159 13.853 24.942 1.00 9.45 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 10.471 16.159 24.771 1.00 9.66 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 10.843 17.439 24.702 1.00 9.70 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 13.997 22.952 22.093 1.00 15.28 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 14.809 23.797 22.952 1.00 12.86 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 12.734 23.428 21.512 1.00 13.51 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 14.685 21.991 21.031 1.00 11.26 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 16.058 21.647 21.245 1.00 11.29 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 16.418 20.660 20.151 1.00 11.16 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 15.547 19.564 20.236 1.00 10.60 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 16.289 21.179 18.711 1.00 11.06 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 17.444 20.810 17.916 1.00 12.21 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 15.043 20.500 18.172 1.00 10.86 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 15.271 19.141 18.876 1.00 9.84 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 14.113 18.276 18.727 1.00 9.37 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 12.782 18.668 18.652 1.00 8.75 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 11.973 17.653 18.486 1.00 8.90 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 12.782 16.548 18.422 1.00 8.68 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 12.503 15.153 18.289 1.00 8.57 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 11.342 14.682 18.161 1.00 8.79 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 13.603 14.372 18.342 1.00 8.22 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 14.865 14.826 18.422 1.00 8.02 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 15.942 14.025 18.406 1.00 7.48 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 15.178 16.125 18.567 1.00 8.25 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 14.099 16.909 18.561 1.00 8.78 ? 2 DG A C4 1
ATOM 39 P P . DA A 1 3 ? 18.417 21.799 17.185 1.00 15.63 ? 3 DA A P 1
ATOM 40 O OP1 . DA A 1 3 ? 18.899 22.867 18.070 1.00 14.34 ? 3 DA A OP1 1
ATOM 41 O OP2 . DA A 1 3 ? 17.365 22.253 16.192 1.00 16.50 ? 3 DA A OP2 1
ATOM 42 O "O5'" . DA A 1 3 ? 19.482 20.855 16.480 1.00 12.35 ? 3 DA A "O5'" 1
ATOM 43 C "C5'" . DA A 1 3 ? 20.271 20.088 17.462 1.00 11.52 ? 3 DA A "C5'" 1
ATOM 44 C "C4'" . DA A 1 3 ? 20.418 18.710 16.854 1.00 11.28 ? 3 DA A "C4'" 1
ATOM 45 O "O4'" . DA A 1 3 ? 19.214 17.983 16.971 1.00 10.75 ? 3 DA A "O4'" 1
ATOM 46 C "C3'" . DA A 1 3 ? 20.773 18.747 15.365 1.00 11.38 ? 3 DA A "C3'" 1
ATOM 47 O "O3'" . DA A 1 3 ? 22.087 18.265 15.152 1.00 11.74 ? 3 DA A "O3'" 1
ATOM 48 C "C2'" . DA A 1 3 ? 19.696 17.921 14.698 1.00 11.10 ? 3 DA A "C2'" 1
ATOM 49 C "C1'" . DA A 1 3 ? 19.023 17.165 15.776 1.00 10.40 ? 3 DA A "C1'" 1
ATOM 50 N N9 . DA A 1 3 ? 17.582 17.044 15.568 1.00 9.84 ? 3 DA A N9 1
ATOM 51 C C8 . DA A 1 3 ? 16.711 18.104 15.568 1.00 9.81 ? 3 DA A C8 1
ATOM 52 N N7 . DA A 1 3 ? 15.468 17.774 15.371 1.00 9.65 ? 3 DA A N7 1
ATOM 53 C C5 . DA A 1 3 ? 15.508 16.385 15.259 1.00 9.38 ? 3 DA A C5 1
ATOM 54 C C6 . DA A 1 3 ? 14.485 15.432 15.077 1.00 9.13 ? 3 DA A C6 1
ATOM 55 N N6 . DA A 1 3 ? 13.185 15.669 14.965 1.00 9.03 ? 3 DA A N6 1
ATOM 56 N N1 . DA A 1 3 ? 14.941 14.161 15.040 1.00 8.78 ? 3 DA A N1 1
ATOM 57 C C2 . DA A 1 3 ? 16.227 13.800 15.163 1.00 8.89 ? 3 DA A C2 1
ATOM 58 N N3 . DA A 1 3 ? 17.224 14.660 15.344 1.00 9.11 ? 3 DA A N3 1
ATOM 59 C C4 . DA A 1 3 ? 16.799 15.925 15.387 1.00 9.47 ? 3 DA A C4 1
ATOM 60 P P . DT A 1 4 ? 22.600 18.177 13.610 1.00 16.50 ? 4 DT A P 1
ATOM 61 O OP1 . DT A 1 4 ? 24.014 18.459 13.936 1.00 17.21 ? 4 DT A OP1 1
ATOM 62 O OP2 . DT A 1 4 ? 21.785 19.172 12.906 1.00 16.83 ? 4 DT A OP2 1
ATOM 63 O "O5'" . DT A 1 4 ? 22.067 16.726 13.327 1.00 13.98 ? 4 DT A "O5'" 1
ATOM 64 C "C5'" . DT A 1 4 ? 22.478 15.483 13.877 1.00 13.60 ? 4 DT A "C5'" 1
ATOM 65 C "C4'" . DT A 1 4 ? 21.948 14.386 12.981 1.00 13.61 ? 4 DT A "C4'" 1
ATOM 66 O "O4'" . DT A 1 4 ? 20.539 14.304 13.034 1.00 13.40 ? 4 DT A "O4'" 1
ATOM 67 C "C3'" . DT A 1 4 ? 22.335 14.527 11.503 1.00 13.68 ? 4 DT A "C3'" 1
ATOM 68 O "O3'" . DT A 1 4 ? 22.831 13.287 11.017 1.00 14.24 ? 4 DT A "O3'" 1
ATOM 69 C "C2'" . DT A 1 4 ? 21.046 15.020 10.873 1.00 13.48 ? 4 DT A "C2'" 1
ATOM 70 C "C1'" . DT A 1 4 ? 20.012 14.282 11.684 1.00 13.01 ? 4 DT A "C1'" 1
ATOM 71 N N1 . DT A 1 4 ? 18.704 14.922 11.716 1.00 12.34 ? 4 DT A N1 1
ATOM 72 C C2 . DT A 1 4 ? 17.585 14.104 11.775 1.00 12.24 ? 4 DT A C2 1
ATOM 73 O O2 . DT A 1 4 ? 17.673 12.892 11.780 1.00 12.19 ? 4 DT A O2 1
ATOM 74 N N3 . DT A 1 4 ? 16.382 14.702 11.844 1.00 12.13 ? 4 DT A N3 1
ATOM 75 C C4 . DT A 1 4 ? 16.204 16.055 11.828 1.00 12.30 ? 4 DT A C4 1
ATOM 76 O O4 . DT A 1 4 ? 15.029 16.497 11.914 1.00 11.99 ? 4 DT A O4 1
ATOM 77 C C5 . DT A 1 4 ? 17.365 16.875 11.796 1.00 12.26 ? 4 DT A C5 1
ATOM 78 C C7 . DT A 1 4 ? 17.227 18.380 11.823 1.00 12.41 ? 4 DT A C7 1
ATOM 79 C C6 . DT A 1 4 ? 18.566 16.283 11.743 1.00 12.36 ? 4 DT A C6 1
ATOM 80 P P . DC A 1 5 ? 23.795 12.920 9.806 1.00 18.41 ? 5 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? 24.508 11.672 10.126 1.00 16.54 ? 5 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? 24.558 14.070 9.326 1.00 15.31 ? 5 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? 22.591 12.529 8.734 1.00 14.08 ? 5 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? 22.149 11.136 8.702 1.00 13.35 ? 5 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? 20.914 11.195 7.816 1.00 12.80 ? 5 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 19.970 12.066 8.488 1.00 12.51 ? 5 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? 21.111 11.768 6.429 1.00 12.71 ? 5 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? 20.443 11.015 5.410 1.00 12.81 ? 5 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? 20.500 13.177 6.536 1.00 12.38 ? 5 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? 19.330 12.799 7.491 1.00 11.79 ? 5 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? 18.608 14.017 7.869 1.00 11.14 ? 5 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 17.239 13.822 8.035 1.00 10.52 ? 5 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 16.762 12.698 7.987 1.00 10.16 ? 5 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 16.492 14.924 8.280 1.00 10.30 ? 5 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 16.999 16.167 8.318 1.00 10.24 ? 5 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 16.213 17.208 8.552 1.00 10.35 ? 5 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? 18.397 16.362 8.142 1.00 10.45 ? 5 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? 19.135 15.260 7.923 1.00 10.59 ? 5 DC A C6 1
ATOM 99 P P . DG A 1 6 ? 21.224 9.800 4.748 1.00 11.62 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 21.813 8.836 5.762 1.00 13.73 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 22.227 10.550 3.953 1.00 7.82 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 20.111 8.994 3.959 1.00 12.18 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 18.823 8.707 4.498 1.00 11.74 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 18.084 7.833 3.527 1.00 11.12 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 16.999 8.585 2.929 1.00 10.86 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 18.786 7.269 2.294 1.00 10.92 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 18.078 6.099 1.873 1.00 11.33 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 18.715 8.414 1.307 1.00 10.49 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 17.379 9.059 1.622 1.00 9.70 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 17.478 10.527 1.595 1.00 8.94 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 18.575 11.336 1.611 1.00 8.81 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 18.281 12.602 1.595 1.00 8.07 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 16.889 12.647 1.537 1.00 7.98 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 15.984 13.729 1.494 1.00 7.65 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 16.232 14.941 1.537 1.00 7.23 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 14.662 13.380 1.451 1.00 7.66 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 14.256 12.092 1.440 1.00 7.40 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 12.946 11.824 1.440 1.00 7.63 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 15.077 11.009 1.494 1.00 7.86 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 16.379 11.373 1.547 1.00 8.20 ? 6 DG A C4 1
HETATM 121 C C1 . CMD B 2 . ? 15.466 18.321 5.079 1.00 12.28 ? 7 CMD A C1 1
HETATM 122 C C2 . CMD B 2 . ? 16.658 19.042 5.036 1.00 12.14 ? 7 CMD A C2 1
HETATM 123 C C3 . CMD B 2 . ? 17.952 18.377 4.956 1.00 12.40 ? 7 CMD A C3 1
HETATM 124 C C4 . CMD B 2 . ? 17.974 16.909 4.866 1.00 11.96 ? 7 CMD A C4 1
HETATM 125 O O4 . CMD B 2 . ? 19.099 16.196 4.775 1.00 12.00 ? 7 CMD A O4 1
HETATM 126 C C5 . CMD B 2 . ? 16.711 16.272 4.892 1.00 12.03 ? 7 CMD A C5 1
HETATM 127 C C6 . CMD B 2 . ? 16.655 14.781 4.839 1.00 12.10 ? 7 CMD A C6 1
HETATM 128 O O6 . CMD B 2 . ? 17.642 14.051 4.743 1.00 12.03 ? 7 CMD A O6 1
HETATM 129 C C7 . CMD B 2 . ? 15.330 14.104 4.882 1.00 12.18 ? 7 CMD A C7 1
HETATM 130 C C8 . CMD B 2 . ? 15.288 12.703 4.818 1.00 12.42 ? 7 CMD A C8 1
HETATM 131 O O8 . CMD B 2 . ? 16.354 11.962 4.738 1.00 12.68 ? 7 CMD A O8 1
HETATM 132 C C9 . CMD B 2 . ? 14.023 12.081 4.828 1.00 13.00 ? 7 CMD A C9 1
HETATM 133 C C10 . CMD B 2 . ? 14.034 10.499 4.738 1.00 13.62 ? 7 CMD A C10 1
HETATM 134 O O10 . CMD B 2 . ? 14.817 10.127 5.901 1.00 14.54 ? 7 CMD A O10 1
HETATM 135 C C11 . CMD B 2 . ? 12.670 9.885 4.674 1.00 13.54 ? 7 CMD A C11 1
HETATM 136 C C12 . CMD B 2 . ? 11.621 10.632 5.442 1.00 13.43 ? 7 CMD A C12 1
HETATM 137 O O12 . CMD B 2 . ? 11.790 10.488 6.866 1.00 13.78 ? 7 CMD A O12 1
HETATM 138 C C13 . CMD B 2 . ? 10.229 10.009 5.159 1.00 13.69 ? 7 CMD A C13 1
HETATM 139 O O13 . CMD B 2 . ? 9.874 10.409 4.049 1.00 13.89 ? 7 CMD A O13 1
HETATM 140 C C14 . CMD B 2 . ? 9.854 8.577 5.554 1.00 14.02 ? 7 CMD A C14 1
HETATM 141 O O14 . CMD B 2 . ? 8.414 8.290 5.655 1.00 14.12 ? 7 CMD A O14 1
HETATM 142 C C15 . CMD B 2 . ? 11.503 12.134 4.983 1.00 13.17 ? 7 CMD A C15 1
HETATM 143 C C16 . CMD B 2 . ? 12.802 12.746 4.935 1.00 12.74 ? 7 CMD A C16 1
HETATM 144 C C17 . CMD B 2 . ? 12.884 14.152 4.994 1.00 12.30 ? 7 CMD A C17 1
HETATM 145 O O17 . CMD B 2 . ? 11.731 14.919 5.095 1.00 12.27 ? 7 CMD A O17 1
HETATM 146 C C18 . CMD B 2 . ? 14.073 14.888 4.999 1.00 12.22 ? 7 CMD A C18 1
HETATM 147 C C19 . CMD B 2 . ? 14.180 16.325 5.047 1.00 12.14 ? 7 CMD A C19 1
HETATM 148 O O19 . CMD B 2 . ? 13.197 17.047 5.154 1.00 12.22 ? 7 CMD A O19 1
HETATM 149 C C20 . CMD B 2 . ? 15.516 16.920 5.010 1.00 12.09 ? 7 CMD A C20 1
HETATM 150 C C21 . CMD B 2 . ? 20.398 17.007 4.770 1.00 11.95 ? 7 CMD A C21 1
HETATM 151 C "C1'" . CMD B 2 . ? 15.553 8.966 5.975 1.00 15.49 ? 7 CMD A "C1'" 1
HETATM 152 C "C2'" . CMD B 2 . ? 16.585 9.014 7.064 1.00 16.04 ? 7 CMD A "C2'" 1
HETATM 153 C "C3'" . CMD B 2 . ? 15.860 9.166 8.424 1.00 16.71 ? 7 CMD A "C3'" 1
HETATM 154 C "C4'" . CMD B 2 . ? 14.896 7.960 8.590 1.00 16.56 ? 7 CMD A "C4'" 1
HETATM 155 O "O4'" . CMD B 2 . ? 15.739 6.770 8.723 1.00 16.79 ? 7 CMD A "O4'" 1
HETATM 156 C "C5'" . CMD B 2 . ? 13.882 7.940 7.475 1.00 16.18 ? 7 CMD A "C5'" 1
HETATM 157 O "O5'" . CMD B 2 . ? 14.600 7.850 6.141 1.00 15.93 ? 7 CMD A "O5'" 1
HETATM 158 C "C6'" . CMD B 2 . ? 13.011 6.655 7.459 1.00 16.19 ? 7 CMD A "C6'" 1
HETATM 159 N "N3'" . CMD B 2 . ? 16.869 9.163 9.534 1.00 17.32 ? 7 CMD A "N3'" 1
HETATM 160 C C33 . CMD B 2 . ? 16.156 9.076 10.761 1.00 17.83 ? 7 CMD A C33 1
HETATM 161 C C23 . CMD B 2 . ? 16.669 10.113 11.839 1.00 17.85 ? 7 CMD A C23 1
HETATM 162 O O16 . CMD B 2 . ? 18.129 10.017 11.753 1.00 18.03 ? 7 CMD A O16 1
HETATM 163 C C63 . CMD B 2 . ? 18.631 10.626 10.542 1.00 17.82 ? 7 CMD A C63 1
HETATM 164 C C53 . CMD B 2 . ? 17.763 10.263 9.337 1.00 17.54 ? 7 CMD A C53 1
HETATM 165 C C73 . CMD B 2 . ? 16.432 7.672 11.305 1.00 18.36 ? 7 CMD A C73 1
HETATM 166 N N73 . CMD B 2 . ? 17.286 7.055 11.839 1.00 18.72 ? 7 CMD A N73 1
HETATM 167 O O . HOH C 3 . ? 19.857 14.386 2.177 1.00 19.43 ? 8 HOH A O 1
HETATM 168 O O . HOH C 3 . ? 12.503 19.037 14.805 1.00 31.79 ? 9 HOH A O 1
HETATM 169 O O . HOH C 3 . ? 22.143 15.488 7.219 1.00 19.89 ? 10 HOH A O 1
HETATM 170 O O . HOH C 3 . ? 19.107 21.393 3.911 1.00 14.60 ? 11 HOH A O 1
HETATM 171 O O . HOH C 3 . ? 13.462 18.597 11.588 1.00 27.85 ? 12 HOH A O 1
HETATM 172 O O . HOH C 3 . ? 11.954 27.194 5.239 1.00 30.22 ? 13 HOH A O 1
HETATM 173 O O . HOH C 3 . ? 9.352 21.032 2.593 1.00 43.78 ? 14 HOH A O 1
HETATM 174 O O . HOH C 3 . ? 7.399 18.329 6.210 1.00 34.79 ? 15 HOH A O 1
HETATM 175 O O . HOH C 3 . ? 9.595 5.011 3.190 1.00 33.06 ? 16 HOH A O 1
HETATM 176 O O . HOH C 3 . ? 17.870 17.067 1.547 1.00 26.06 ? 17 HOH A O 1
HETATM 177 O O . HOH C 3 . ? 15.485 19.189 1.478 1.00 30.48 ? 18 HOH A O 1
HETATM 178 O O . HOH C 3 . ? 11.599 21.898 9.545 1.00 34.97 ? 19 HOH A O 1
HETATM 179 O O . HOH C 3 . ? 12.292 20.029 5.351 1.00 37.57 ? 20 HOH A O 1
HETATM 180 O O . HOH C 3 . ? 12.024 0.273 -1.003 1.00 26.70 ? 21 HOH A O 1
HETATM 181 O O . HOH C 3 . ? 13.910 24.031 15.237 1.00 40.35 ? 22 HOH A O 1
HETATM 182 O O . HOH C 3 . ? 16.466 24.370 10.537 1.00 34.62 ? 23 HOH A O 1
HETATM 183 O O . HOH C 3 . ? 14.733 4.056 10.020 1.00 27.51 ? 24 HOH A O 1
HETATM 184 O O . HOH C 3 . ? 13.825 20.598 8.654 1.00 25.43 ? 25 HOH A O 1
HETATM 185 O O . HOH C 3 . ? 16.134 2.393 8.307 1.00 21.26 ? 26 HOH A O 1
HETATM 186 O O . HOH C 3 . ? 12.977 4.434 3.190 1.00 30.20 ? 27 HOH A O 1
HETATM 187 O O . HOH C 3 . ? 21.810 10.682 1.270 1.00 27.36 ? 28 HOH A O 1
HETATM 188 O O . HOH C 3 . ? 13.304 2.083 -1.014 1.00 39.83 ? 29 HOH A O 1
HETATM 189 O O . HOH C 3 . ? 5.446 14.716 0.091 1.00 36.63 ? 30 HOH A O 1
HETATM 190 O O . HOH C 3 . ? 10.437 19.009 8.414 1.00 31.74 ? 31 HOH A O 1
HETATM 191 O O . HOH C 3 . ? 14.107 21.960 5.591 1.00 28.36 ? 32 HOH A O 1
HETATM 192 O O . HOH C 3 . ? 22.399 12.889 3.201 1.00 21.14 ? 33 HOH A O 1
HETATM 193 O O . HOH C 3 . ? 11.452 4.312 0.822 1.00 34.34 ? 34 HOH A O 1
HETATM 194 O O . HOH C 3 . ? 13.743 8.484 1.425 1.00 25.29 ? 35 HOH A O 1
HETATM 195 O O . HOH C 3 . ? 11.226 9.265 0.955 1.00 16.66 ? 36 HOH A O 1
HETATM 196 O O . HOH C 3 . ? 15.843 2.655 1.131 1.00 14.35 ? 37 HOH A O 1
HETATM 197 O O . HOH C 3 . ? 20.164 21.075 -1.110 1.00 24.39 ? 38 HOH A O 1
HETATM 198 O O . HOH C 3 . ? 13.893 21.123 1.067 1.00 32.29 ? 39 HOH A O 1
HETATM 199 O O . HOH C 3 . ? 23.349 5.722 4.727 1.00 23.36 ? 40 HOH A O 1
HETATM 200 O O . HOH C 3 . ? 9.955 5.172 7.064 1.00 28.37 ? 41 HOH A O 1
HETATM 201 O O . HOH C 3 . ? 22.760 16.492 1.531 1.00 36.98 ? 42 HOH A O 1
HETATM 202 O O . HOH C 3 . ? 8.360 12.064 1.942 1.00 19.03 ? 43 HOH A O 1
HETATM 203 O O . HOH C 3 . ? 13.036 28.753 7.928 1.00 34.00 ? 44 HOH A O 1
HETATM 204 O O . HOH C 3 . ? 24.854 12.656 4.274 1.00 30.21 ? 45 HOH A O 1
HETATM 205 O O . HOH C 3 . ? 16.542 22.160 13.381 1.00 39.79 ? 46 HOH A O 1
HETATM 206 O O . HOH C 3 . ? 25.094 16.912 -0.667 1.00 27.06 ? 47 HOH A O 1
HETATM 207 O O . HOH C 3 . ? 17.278 23.558 7.405 1.00 16.98 ? 48 HOH A O 1
HETATM 208 O O . HOH C 3 . ? 26.190 18.487 8.382 1.00 34.89 ? 49 HOH A O 1
HETATM 209 O O . HOH C 3 . ? 7.140 9.662 2.022 1.00 22.90 ? 50 HOH A O 1
HETATM 210 O O . HOH C 3 . ? 12.216 21.512 3.046 1.00 32.92 ? 51 HOH A O 1
HETATM 211 O O . HOH C 3 . ? 18.141 3.805 8.766 1.00 32.36 ? 52 HOH A O 1
HETATM 212 O O . HOH C 3 . ? 20.263 4.420 3.975 1.00 32.20 ? 53 HOH A O 1
HETATM 213 O O . HOH C 3 . ? 12.599 23.896 18.711 1.00 23.71 ? 54 HOH A O 1
HETATM 214 O O . HOH C 3 . ? 8.842 20.827 10.654 1.00 35.38 ? 55 HOH A O 1
HETATM 215 O O . HOH C 3 . ? 11.948 3.284 10.222 1.00 19.10 ? 56 HOH A O 1
HETATM 216 O O . HOH C 3 . ? 14.882 25.731 6.808 1.00 32.55 ? 57 HOH A O 1
HETATM 217 O O . HOH C 3 . ? 7.858 22.013 7.539 1.00 35.98 ? 58 HOH A O 1
HETATM 218 O O . HOH C 3 . ? 9.789 23.758 6.941 1.00 38.79 ? 59 HOH A O 1
HETATM 219 O O . HOH C 3 . ? 12.467 22.402 12.602 1.00 35.26 ? 60 HOH A O 1
HETATM 220 O O . HOH C 3 . ? 12.929 9.544 9.193 1.00 57.93 ? 61 HOH A O 1
HETATM 221 O O . HOH C 3 . ? 13.930 25.181 4.375 1.00 42.72 ? 62 HOH A O 1
HETATM 222 O O . HOH C 3 . ? 26.709 13.149 11.348 1.00 36.54 ? 63 HOH A O 1
HETATM 223 O O . HOH C 3 . ? 9.952 7.289 2.219 1.00 32.29 ? 64 HOH A O 1
HETATM 224 O O . HOH C 3 . ? 13.419 23.617 2.001 1.00 40.45 ? 65 HOH A O 1
HETATM 225 O O . HOH C 3 . ? 23.888 14.090 1.104 1.00 35.60 ? 66 HOH A O 1
HETATM 226 O O . HOH C 3 . ? 7.692 7.359 0.763 1.00 35.88 ? 67 HOH A O 1
HETATM 227 O O . HOH C 3 . ? 18.386 5.302 6.658 1.00 28.73 ? 68 HOH A O 1
#