data_215D
#
_entry.id 215D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 215D pdb_0000215d 10.2210/pdb215d/pdb
RCSB DDF053 ? ?
WWPDB D_1000177577 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1996-01-31
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 215D
_pdbx_database_status.recvd_initial_deposition_date 1995-06-22
_pdbx_database_status.deposit_site BNL
_pdbx_database_status.process_site NDB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Gao, Y.-G.' 1
'Wang, A.H.-J.' 2
#
_citation.id primary
_citation.title
;Crystal structures of four morpholino-doxorubicin anticancer drugs complexed with d(CGTACG) and d(CGATCG): implications in drug-DNA crosslink.
;
_citation.journal_abbrev J.Biomol.Struct.Dyn.
_citation.journal_volume 13
_citation.page_first 103
_citation.page_last 117
_citation.year 1995
_citation.journal_id_ASTM JBSDD6
_citation.country US
_citation.journal_id_ISSN 0739-1102
_citation.journal_id_CSD 0646
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 8527023
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Gao, Y.G.' 1 ?
primary 'Wang, A.H.' 2 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
;
1809.217 1 ? ? ? ?
2 non-polymer syn "3'-DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN" 643.635 1 ? ? ? ?
3 water nat water 18.015 47 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGTACG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 "3'-DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN" DMM
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DT n
1 4 DA n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DMM non-polymer . "3'-DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN" ? 'C32 H37 N O13' 643.635
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DT 3 3 3 DT T A . n
A 1 4 DA 4 4 4 DA A A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMM 1 7 7 DMM DMM A .
C 3 HOH 1 8 8 HOH HOH A .
C 3 HOH 2 9 9 HOH HOH A .
C 3 HOH 3 10 10 HOH HOH A .
C 3 HOH 4 11 11 HOH HOH A .
C 3 HOH 5 12 12 HOH HOH A .
C 3 HOH 6 13 13 HOH HOH A .
C 3 HOH 7 14 14 HOH HOH A .
C 3 HOH 8 15 15 HOH HOH A .
C 3 HOH 9 16 16 HOH HOH A .
C 3 HOH 10 17 17 HOH HOH A .
C 3 HOH 11 18 18 HOH HOH A .
C 3 HOH 12 19 19 HOH HOH A .
C 3 HOH 13 20 20 HOH HOH A .
C 3 HOH 14 21 21 HOH HOH A .
C 3 HOH 15 22 22 HOH HOH A .
C 3 HOH 16 23 23 HOH HOH A .
C 3 HOH 17 24 24 HOH HOH A .
C 3 HOH 18 25 25 HOH HOH A .
C 3 HOH 19 26 26 HOH HOH A .
C 3 HOH 20 27 27 HOH HOH A .
C 3 HOH 21 28 28 HOH HOH A .
C 3 HOH 22 29 29 HOH HOH A .
C 3 HOH 23 30 30 HOH HOH A .
C 3 HOH 24 31 31 HOH HOH A .
C 3 HOH 25 32 32 HOH HOH A .
C 3 HOH 26 33 33 HOH HOH A .
C 3 HOH 27 34 34 HOH HOH A .
C 3 HOH 28 35 35 HOH HOH A .
C 3 HOH 29 36 36 HOH HOH A .
C 3 HOH 30 37 37 HOH HOH A .
C 3 HOH 31 38 38 HOH HOH A .
C 3 HOH 32 39 39 HOH HOH A .
C 3 HOH 33 40 40 HOH HOH A .
C 3 HOH 34 41 41 HOH HOH A .
C 3 HOH 35 42 42 HOH HOH A .
C 3 HOH 36 43 43 HOH HOH A .
C 3 HOH 37 44 44 HOH HOH A .
C 3 HOH 38 45 45 HOH HOH A .
C 3 HOH 39 46 46 HOH HOH A .
C 3 HOH 40 47 47 HOH HOH A .
C 3 HOH 41 48 48 HOH HOH A .
C 3 HOH 42 49 49 HOH HOH A .
C 3 HOH 43 50 50 HOH HOH A .
C 3 HOH 44 51 51 HOH HOH A .
C 3 HOH 45 52 52 HOH HOH A .
C 3 HOH 46 53 53 HOH HOH A .
C 3 HOH 47 54 54 HOH HOH A .
#
_software.name NUCLSQ
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 215D
_cell.length_a 28.122
_cell.length_b 28.122
_cell.length_c 53.029
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 215D
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 92
#
_exptl.entry_id 215D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.90
_exptl_crystal.density_percent_sol 57.55
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH 6.00
_exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 BACL2 ? ? ?
1 4 1 'NA CACODYLATE' ? ? ?
1 5 1 SPERMINE ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 298.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'RIGAKU AFC-5'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type RIGAKU
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 215D
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high 1.700
_reflns.number_obs ?
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 215D
_refine.ls_number_reflns_obs 1635
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 1.700
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1890000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 46
_refine_hist.number_atoms_solvent 47
_refine_hist.number_atoms_total 213
_refine_hist.d_res_high 1.700
_refine_hist.d_res_low .
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
n_bond_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ?
n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 215D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 215D
_struct.title
;CRYSTAL STRUCTURE OF FOUR MORPHOLINO-DOXORUBICIN ANTICANCER DRUGS COMPLEXED WITH D(CGTACG) AND D(CGATCG): IMPLICATIONS IN DRUG-DNA CROSSLINK
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 215D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 215D
_struct_ref.pdbx_db_accession 215D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 215D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 215D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.1220000000 -1.0000000000
0.0000000000 0.0000000000 28.1220000000 0.0000000000 0.0000000000 -1.0000000000 26.5145000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 3 A DA 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 3 A DA 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 4 A DT 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 4 A DT 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A DMM 7 ? 15 'BINDING SITE FOR RESIDUE DMM A 7'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 15 DC A 1 ? DC A 1 . ? 8_665 ?
2 AC1 15 DG A 2 ? DG A 2 . ? 8_665 ?
3 AC1 15 DT A 3 ? DT A 3 . ? 8_665 ?
4 AC1 15 DA A 4 ? DA A 4 . ? 8_665 ?
5 AC1 15 DA A 4 ? DA A 4 . ? 1_555 ?
6 AC1 15 DC A 5 ? DC A 5 . ? 1_555 ?
7 AC1 15 DG A 6 ? DG A 6 . ? 1_555 ?
8 AC1 15 HOH C . ? HOH A 11 . ? 1_555 ?
9 AC1 15 HOH C . ? HOH A 13 . ? 1_555 ?
10 AC1 15 HOH C . ? HOH A 15 . ? 1_555 ?
11 AC1 15 HOH C . ? HOH A 17 . ? 1_555 ?
12 AC1 15 HOH C . ? HOH A 23 . ? 1_555 ?
13 AC1 15 HOH C . ? HOH A 27 . ? 1_555 ?
14 AC1 15 HOH C . ? HOH A 28 . ? 1_555 ?
15 AC1 15 HOH C . ? HOH A 53 . ? 1_555 ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "O3'" A DT 3 ? ? "C3'" A DT 3 ? ? 1.359 1.419 -0.060 0.006 N
2 1 P A DG 6 ? ? "O5'" A DG 6 ? ? 1.663 1.593 0.070 0.010 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 123.22 119.90 3.32 0.50 N
2 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 136.54 119.70 16.84 1.20 Y
3 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 95.74 102.40 -6.66 0.80 N
4 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 115.32 108.30 7.02 0.30 N
5 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 135.37 119.70 15.67 1.20 Y
6 1 "O5'" A DT 3 ? ? "C5'" A DT 3 ? ? "C4'" A DT 3 ? ? 101.29 109.40 -8.11 0.80 N
7 1 "C1'" A DT 3 ? ? "O4'" A DT 3 ? ? "C4'" A DT 3 ? ? 103.59 110.10 -6.51 1.00 N
8 1 C2 A DT 3 ? ? N3 A DT 3 ? ? C4 A DT 3 ? ? 121.22 127.20 -5.98 0.60 N
9 1 N3 A DT 3 ? ? C4 A DT 3 ? ? C5 A DT 3 ? ? 120.57 115.20 5.37 0.60 N
10 1 N3 A DT 3 ? ? C4 A DT 3 ? ? O4 A DT 3 ? ? 113.85 119.90 -6.05 0.60 N
11 1 "C3'" A DT 3 ? ? "O3'" A DT 3 ? ? P A DA 4 ? ? 136.99 119.70 17.29 1.20 Y
12 1 C6 A DA 4 ? ? N1 A DA 4 ? ? C2 A DA 4 ? ? 123.46 118.60 4.86 0.60 N
13 1 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 113.71 117.70 -3.99 0.50 N
14 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 102.15 109.40 -7.25 0.80 N
15 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 97.33 102.40 -5.07 0.80 N
16 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 99.79 105.90 -6.11 0.80 N
17 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.84 108.30 6.54 0.30 N
18 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP1 A DG 6 ? ? 118.82 110.70 8.12 1.20 N
19 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 120.57 125.10 -4.53 0.60 N
20 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 115.16 111.50 3.66 0.50 N
21 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 124.78 128.60 -3.82 0.60 N
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text INTERCALATION
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DMM C1 C Y N 108
DMM C2 C Y N 109
DMM C3 C Y N 110
DMM C4 C Y N 111
DMM O4 O N N 112
DMM C5 C Y N 113
DMM C6 C N N 114
DMM O6 O N N 115
DMM C7 C Y N 116
DMM C8 C Y N 117
DMM O8 O N N 118
DMM C9 C Y N 119
DMM C10 C N S 120
DMM O10 O N N 121
DMM C11 C N N 122
DMM C12 C N S 123
DMM O12 O N N 124
DMM C13 C N N 125
DMM O13 O N N 126
DMM C14 C N N 127
DMM O14 O N N 128
DMM C15 C N N 129
DMM C16 C Y N 130
DMM C17 C Y N 131
DMM O17 O N N 132
DMM C18 C Y N 133
DMM C19 C N N 134
DMM O19 O N N 135
DMM C20 C Y N 136
DMM C21 C N N 137
DMM "C1'" C N R 138
DMM "C2'" C N N 139
DMM "C3'" C N S 140
DMM "C4'" C N S 141
DMM "O4'" O N N 142
DMM "C5'" C N S 143
DMM "O5'" O N N 144
DMM "C6'" C N N 145
DMM "N3'" N N N 146
DMM C33 C N N 147
DMM C23 C N S 148
DMM O16 O N N 149
DMM C63 C N N 150
DMM C53 C N N 151
DMM O23 O N N 152
DMM C73 C N N 153
DMM H1 H N N 154
DMM H2 H N N 155
DMM H3 H N N 156
DMM HO8 H N N 157
DMM H10 H N N 158
DMM H111 H N N 159
DMM H112 H N N 160
DMM HO12 H N N 161
DMM H141 H N N 162
DMM H142 H N N 163
DMM HO14 H N N 164
DMM H151 H N N 165
DMM H152 H N N 166
DMM HO17 H N N 167
DMM H211 H N N 168
DMM H212 H N N 169
DMM H213 H N N 170
DMM "H1'" H N N 171
DMM "H2'1" H N N 172
DMM "H2'2" H N N 173
DMM "H3'" H N N 174
DMM "H4'" H N N 175
DMM "HO4'" H N N 176
DMM "H5'" H N N 177
DMM "H6'1" H N N 178
DMM "H6'2" H N N 179
DMM "H6'3" H N N 180
DMM H331 H N N 181
DMM H332 H N N 182
DMM H23 H N N 183
DMM H631 H N N 184
DMM H632 H N N 185
DMM H531 H N N 186
DMM H532 H N N 187
DMM H731 H N N 188
DMM H732 H N N 189
DMM H733 H N N 190
DT OP3 O N N 191
DT P P N N 192
DT OP1 O N N 193
DT OP2 O N N 194
DT "O5'" O N N 195
DT "C5'" C N N 196
DT "C4'" C N R 197
DT "O4'" O N N 198
DT "C3'" C N S 199
DT "O3'" O N N 200
DT "C2'" C N N 201
DT "C1'" C N R 202
DT N1 N N N 203
DT C2 C N N 204
DT O2 O N N 205
DT N3 N N N 206
DT C4 C N N 207
DT O4 O N N 208
DT C5 C N N 209
DT C7 C N N 210
DT C6 C N N 211
DT HOP3 H N N 212
DT HOP2 H N N 213
DT "H5'" H N N 214
DT "H5''" H N N 215
DT "H4'" H N N 216
DT "H3'" H N N 217
DT "HO3'" H N N 218
DT "H2'" H N N 219
DT "H2''" H N N 220
DT "H1'" H N N 221
DT H3 H N N 222
DT H71 H N N 223
DT H72 H N N 224
DT H73 H N N 225
DT H6 H N N 226
HOH O O N N 227
HOH H1 H N N 228
HOH H2 H N N 229
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DMM C1 C2 doub Y N 113
DMM C1 C20 sing Y N 114
DMM C1 H1 sing N N 115
DMM C2 C3 sing Y N 116
DMM C2 H2 sing N N 117
DMM C3 C4 doub Y N 118
DMM C3 H3 sing N N 119
DMM C4 O4 sing N N 120
DMM C4 C5 sing Y N 121
DMM O4 C21 sing N N 122
DMM C5 C6 sing N N 123
DMM C5 C20 doub Y N 124
DMM C6 O6 doub N N 125
DMM C6 C7 sing N N 126
DMM C7 C8 doub Y N 127
DMM C7 C18 sing Y N 128
DMM C8 O8 sing N N 129
DMM C8 C9 sing Y N 130
DMM O8 HO8 sing N N 131
DMM C9 C10 sing N N 132
DMM C9 C16 doub Y N 133
DMM C10 O10 sing N N 134
DMM C10 C11 sing N N 135
DMM C10 H10 sing N N 136
DMM O10 "C1'" sing N N 137
DMM C11 C12 sing N N 138
DMM C11 H111 sing N N 139
DMM C11 H112 sing N N 140
DMM C12 O12 sing N N 141
DMM C12 C13 sing N N 142
DMM C12 C15 sing N N 143
DMM O12 HO12 sing N N 144
DMM C13 O13 doub N N 145
DMM C13 C14 sing N N 146
DMM C14 O14 sing N N 147
DMM C14 H141 sing N N 148
DMM C14 H142 sing N N 149
DMM O14 HO14 sing N N 150
DMM C15 C16 sing N N 151
DMM C15 H151 sing N N 152
DMM C15 H152 sing N N 153
DMM C16 C17 sing Y N 154
DMM C17 O17 sing N N 155
DMM C17 C18 doub Y N 156
DMM O17 HO17 sing N N 157
DMM C18 C19 sing N N 158
DMM C19 O19 doub N N 159
DMM C19 C20 sing N N 160
DMM C21 H211 sing N N 161
DMM C21 H212 sing N N 162
DMM C21 H213 sing N N 163
DMM "C1'" "C2'" sing N N 164
DMM "C1'" "O5'" sing N N 165
DMM "C1'" "H1'" sing N N 166
DMM "C2'" "C3'" sing N N 167
DMM "C2'" "H2'1" sing N N 168
DMM "C2'" "H2'2" sing N N 169
DMM "C3'" "C4'" sing N N 170
DMM "C3'" "N3'" sing N N 171
DMM "C3'" "H3'" sing N N 172
DMM "C4'" "O4'" sing N N 173
DMM "C4'" "C5'" sing N N 174
DMM "C4'" "H4'" sing N N 175
DMM "O4'" "HO4'" sing N N 176
DMM "C5'" "O5'" sing N N 177
DMM "C5'" "C6'" sing N N 178
DMM "C5'" "H5'" sing N N 179
DMM "C6'" "H6'1" sing N N 180
DMM "C6'" "H6'2" sing N N 181
DMM "C6'" "H6'3" sing N N 182
DMM "N3'" C33 sing N N 183
DMM "N3'" C53 sing N N 184
DMM C33 C23 sing N N 185
DMM C33 H331 sing N N 186
DMM C33 H332 sing N N 187
DMM C23 O16 sing N N 188
DMM C23 O23 sing N N 189
DMM C23 H23 sing N N 190
DMM O16 C63 sing N N 191
DMM C63 C53 sing N N 192
DMM C63 H631 sing N N 193
DMM C63 H632 sing N N 194
DMM C53 H531 sing N N 195
DMM C53 H532 sing N N 196
DMM O23 C73 sing N N 197
DMM C73 H731 sing N N 198
DMM C73 H732 sing N N 199
DMM C73 H733 sing N N 200
DT OP3 P sing N N 201
DT OP3 HOP3 sing N N 202
DT P OP1 doub N N 203
DT P OP2 sing N N 204
DT P "O5'" sing N N 205
DT OP2 HOP2 sing N N 206
DT "O5'" "C5'" sing N N 207
DT "C5'" "C4'" sing N N 208
DT "C5'" "H5'" sing N N 209
DT "C5'" "H5''" sing N N 210
DT "C4'" "O4'" sing N N 211
DT "C4'" "C3'" sing N N 212
DT "C4'" "H4'" sing N N 213
DT "O4'" "C1'" sing N N 214
DT "C3'" "O3'" sing N N 215
DT "C3'" "C2'" sing N N 216
DT "C3'" "H3'" sing N N 217
DT "O3'" "HO3'" sing N N 218
DT "C2'" "C1'" sing N N 219
DT "C2'" "H2'" sing N N 220
DT "C2'" "H2''" sing N N 221
DT "C1'" N1 sing N N 222
DT "C1'" "H1'" sing N N 223
DT N1 C2 sing N N 224
DT N1 C6 sing N N 225
DT C2 O2 doub N N 226
DT C2 N3 sing N N 227
DT N3 C4 sing N N 228
DT N3 H3 sing N N 229
DT C4 O4 doub N N 230
DT C4 C5 sing N N 231
DT C5 C7 sing N N 232
DT C5 C6 doub N N 233
DT C7 H71 sing N N 234
DT C7 H72 sing N N 235
DT C7 H73 sing N N 236
DT C6 H6 sing N N 237
HOH O H1 sing N N 238
HOH O H2 sing N N 239
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
215D 'double helix'
215D 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 8_665 0.185 -0.226 -0.023 6.743 2.222 -1.153 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 8_665 -0.160 -0.123 -0.301 -12.982 1.949 1.482 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DT 3 1_555 A DA 4 8_665 -0.032 -0.135 0.055 -6.825 -8.310 1.834 3 A_DT3:DA4_A A 3 ? A 4 ? 20 1
1 A DA 4 1_555 A DT 3 8_665 0.032 -0.135 0.055 6.825 -8.310 1.834 4 A_DA4:DT3_A A 4 ? A 3 ? 20 1
1 A DC 5 1_555 A DG 2 8_665 0.160 -0.123 -0.301 12.982 1.949 1.482 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 8_665 -0.185 -0.226 -0.023 -6.743 2.222 -1.153 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.051 1.187 7.018 1.208 -4.145 34.838 3.291 -1.358 6.867 -6.891 -2.008
35.096 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 8_665 A DT 3 1_555 A DA 4 8_665 -0.902 -0.231 3.268 -2.924 -1.810 30.898 -0.080 1.116 3.345 -3.384 5.466
31.084 2 AA_DG2DT3:DA4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DT 3 1_555 A DA 4 8_665 A DA 4 1_555 A DT 3 8_665 0.000 0.371 3.093 0.000 9.875 35.866 -0.685 0.000 3.085 15.673 0.000
37.157 3 AA_DT3DA4:DT3DA4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DA 4 1_555 A DT 3 8_665 A DC 5 1_555 A DG 2 8_665 0.902 -0.231 3.268 2.924 -1.810 30.898 -0.080 -1.116 3.345 -3.384 -5.466
31.084 4 AA_DA4DC5:DG2DT3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.051 1.187 7.018 -1.208 -4.145 34.838 3.291 1.358 6.867 -6.891 2.008
35.096 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_atom_sites.entry_id 215D
_atom_sites.fract_transf_matrix[1][1] 0.035559
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.035559
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.018858
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 9.182 20.450 23.110 1.00 12.14 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 9.789 21.345 24.059 1.00 11.32 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 11.249 20.985 24.218 1.00 11.13 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 11.367 19.753 24.934 1.00 10.95 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 12.084 20.841 22.951 1.00 11.30 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 13.102 21.834 22.972 1.00 12.04 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 12.680 19.427 23.009 1.00 10.67 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 12.481 18.994 24.425 1.00 10.03 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 12.078 17.596 24.547 1.00 9.31 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 13.082 16.657 24.717 1.00 8.88 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 14.238 17.028 24.759 1.00 8.63 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 12.711 15.360 24.791 1.00 8.56 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 11.432 14.961 24.786 1.00 8.39 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 11.184 13.664 24.908 1.00 8.10 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 10.391 15.903 24.648 1.00 8.74 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 10.776 17.202 24.563 1.00 9.08 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 13.738 22.872 21.927 1.00 20.11 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 14.660 23.603 22.850 1.00 16.50 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 12.627 23.445 21.185 1.00 16.70 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 14.525 21.879 20.893 1.00 15.06 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 15.790 21.353 21.339 1.00 13.87 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 16.395 20.675 20.146 1.00 13.44 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 15.779 19.401 19.950 1.00 12.78 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 16.218 21.381 18.815 1.00 13.33 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 17.289 20.962 18.003 1.00 14.51 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 14.874 20.824 18.327 1.00 12.88 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 15.183 19.351 18.672 1.00 12.11 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 14.005 18.493 18.565 1.00 11.15 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 12.706 18.819 18.481 1.00 11.03 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 11.890 17.784 18.332 1.00 11.04 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 12.762 16.702 18.306 1.00 10.51 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 12.517 15.304 18.168 1.00 10.31 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 11.395 14.778 18.072 1.00 10.15 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 13.639 14.542 18.178 1.00 9.60 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 14.860 15.059 18.343 1.00 9.70 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 15.880 14.202 18.332 1.00 9.58 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 15.172 16.359 18.433 1.00 10.22 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 14.050 17.118 18.406 1.00 10.57 ? 2 DG A C4 1
ATOM 39 P P . DT A 1 3 ? 18.341 21.682 17.070 1.00 20.18 ? 3 DT A P 1
ATOM 40 O OP1 . DT A 1 3 ? 18.949 22.829 17.722 1.00 20.17 ? 3 DT A OP1 1
ATOM 41 O OP2 . DT A 1 3 ? 17.334 21.868 15.919 1.00 18.85 ? 3 DT A OP2 1
ATOM 42 O "O5'" . DT A 1 3 ? 19.342 20.549 16.587 1.00 15.05 ? 3 DT A "O5'" 1
ATOM 43 C "C5'" . DT A 1 3 ? 20.265 19.789 17.409 1.00 13.62 ? 3 DT A "C5'" 1
ATOM 44 C "C4'" . DT A 1 3 ? 20.099 18.395 16.831 1.00 12.82 ? 3 DT A "C4'" 1
ATOM 45 O "O4'" . DT A 1 3 ? 18.746 18.060 16.895 1.00 12.15 ? 3 DT A "O4'" 1
ATOM 46 C "C3'" . DT A 1 3 ? 20.400 18.265 15.331 1.00 12.70 ? 3 DT A "C3'" 1
ATOM 47 O "O3'" . DT A 1 3 ? 21.724 18.215 15.028 1.00 12.71 ? 3 DT A "O3'" 1
ATOM 48 C "C2'" . DT A 1 3 ? 19.697 16.896 15.018 1.00 12.38 ? 3 DT A "C2'" 1
ATOM 49 C "C1'" . DT A 1 3 ? 18.651 16.842 16.068 1.00 11.64 ? 3 DT A "C1'" 1
ATOM 50 N N1 . DT A 1 3 ? 17.253 16.794 15.585 1.00 11.25 ? 3 DT A N1 1
ATOM 51 C C2 . DT A 1 3 ? 16.758 15.506 15.453 1.00 10.67 ? 3 DT A C2 1
ATOM 52 O O2 . DT A 1 3 ? 17.506 14.542 15.591 1.00 10.64 ? 3 DT A O2 1
ATOM 53 N N3 . DT A 1 3 ? 15.442 15.366 15.124 1.00 10.46 ? 3 DT A N3 1
ATOM 54 C C4 . DT A 1 3 ? 14.629 16.457 14.970 1.00 10.07 ? 3 DT A C4 1
ATOM 55 O O4 . DT A 1 3 ? 13.451 16.173 14.747 1.00 10.22 ? 3 DT A O4 1
ATOM 56 C C5 . DT A 1 3 ? 15.138 17.762 15.145 1.00 10.45 ? 3 DT A C5 1
ATOM 57 C C7 . DT A 1 3 ? 14.244 18.971 14.954 1.00 10.02 ? 3 DT A C7 1
ATOM 58 C C6 . DT A 1 3 ? 16.451 17.902 15.463 1.00 10.60 ? 3 DT A C6 1
ATOM 59 P P . DA A 1 4 ? 22.621 17.964 13.719 1.00 15.01 ? 4 DA A P 1
ATOM 60 O OP1 . DA A 1 4 ? 23.977 17.911 14.403 1.00 14.13 ? 4 DA A OP1 1
ATOM 61 O OP2 . DA A 1 4 ? 22.309 19.075 12.881 1.00 15.32 ? 4 DA A OP2 1
ATOM 62 O "O5'" . DA A 1 4 ? 22.087 16.575 13.199 1.00 11.25 ? 4 DA A "O5'" 1
ATOM 63 C "C5'" . DA A 1 4 ? 22.768 15.481 13.809 1.00 11.19 ? 4 DA A "C5'" 1
ATOM 64 C "C4'" . DA A 1 4 ? 22.309 14.247 13.045 1.00 10.85 ? 4 DA A "C4'" 1
ATOM 65 O "O4'" . DA A 1 4 ? 20.917 14.190 13.088 1.00 10.89 ? 4 DA A "O4'" 1
ATOM 66 C "C3'" . DA A 1 4 ? 22.731 14.308 11.576 1.00 10.93 ? 4 DA A "C3'" 1
ATOM 67 O "O3'" . DA A 1 4 ? 23.178 13.057 11.152 1.00 11.44 ? 4 DA A "O3'" 1
ATOM 68 C "C2'" . DA A 1 4 ? 21.451 14.840 10.908 1.00 10.84 ? 4 DA A "C2'" 1
ATOM 69 C "C1'" . DA A 1 4 ? 20.408 14.117 11.730 1.00 10.34 ? 4 DA A "C1'" 1
ATOM 70 N N9 . DA A 1 4 ? 19.126 14.812 11.714 1.00 9.97 ? 4 DA A N9 1
ATOM 71 C C8 . DA A 1 4 ? 18.904 16.176 11.815 1.00 9.71 ? 4 DA A C8 1
ATOM 72 N N7 . DA A 1 4 ? 17.661 16.505 11.804 1.00 9.52 ? 4 DA A N7 1
ATOM 73 C C5 . DA A 1 4 ? 16.994 15.298 11.772 1.00 9.41 ? 4 DA A C5 1
ATOM 74 C C6 . DA A 1 4 ? 15.616 14.975 11.746 1.00 9.23 ? 4 DA A C6 1
ATOM 75 N N6 . DA A 1 4 ? 14.643 15.852 11.741 1.00 9.08 ? 4 DA A N6 1
ATOM 76 N N1 . DA A 1 4 ? 15.371 13.653 11.682 1.00 9.22 ? 4 DA A N1 1
ATOM 77 C C2 . DA A 1 4 ? 16.345 12.714 11.661 1.00 9.31 ? 4 DA A C2 1
ATOM 78 N N3 . DA A 1 4 ? 17.652 12.933 11.645 1.00 9.59 ? 4 DA A N3 1
ATOM 79 C C4 . DA A 1 4 ? 17.891 14.255 11.704 1.00 9.54 ? 4 DA A C4 1
ATOM 80 P P . DC A 1 5 ? 23.867 12.742 9.694 1.00 14.44 ? 5 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? 24.832 11.741 9.954 1.00 15.04 ? 5 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? 24.188 14.137 9.269 1.00 15.27 ? 5 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? 22.557 12.270 8.914 1.00 12.91 ? 5 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? 22.045 10.897 9.041 1.00 12.45 ? 5 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? 20.816 10.934 8.166 1.00 12.20 ? 5 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 19.941 11.941 8.723 1.00 11.88 ? 5 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? 20.990 11.347 6.703 1.00 12.19 ? 5 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? 20.284 10.470 5.838 1.00 12.42 ? 5 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? 20.383 12.762 6.655 1.00 11.77 ? 5 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? 19.221 12.511 7.636 1.00 11.24 ? 5 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? 18.518 13.743 7.949 1.00 10.73 ? 5 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 17.140 13.634 8.113 1.00 10.14 ? 5 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 16.631 12.517 8.044 1.00 10.25 ? 5 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 16.437 14.739 8.373 1.00 10.06 ? 5 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 17.034 15.970 8.432 1.00 10.11 ? 5 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 16.311 17.067 8.607 1.00 10.04 ? 5 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? 18.431 16.091 8.225 1.00 10.38 ? 5 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? 19.120 14.955 8.023 1.00 10.37 ? 5 DC A C6 1
ATOM 99 P P . DG A 1 6 ? 21.120 9.477 4.868 1.00 13.93 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 21.783 8.496 5.738 1.00 17.01 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 21.870 10.478 4.083 1.00 15.97 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 19.888 8.965 3.876 1.00 12.34 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 18.920 8.144 4.555 1.00 10.83 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 17.962 7.632 3.500 1.00 10.24 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 17.112 8.695 3.086 1.00 10.03 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 18.597 7.064 2.248 1.00 10.02 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 17.902 5.852 1.856 1.00 10.66 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 18.521 8.192 1.257 1.00 9.64 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 17.301 8.962 1.649 1.00 9.01 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 17.413 10.414 1.564 1.00 7.96 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 18.504 11.201 1.591 1.00 7.88 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 18.251 12.500 1.612 1.00 7.65 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 16.834 12.537 1.564 1.00 7.26 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 15.956 13.631 1.517 1.00 6.78 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 16.300 14.795 1.506 1.00 6.62 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 14.607 13.305 1.506 1.00 6.66 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 14.210 12.005 1.501 1.00 6.55 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 12.902 11.792 1.453 1.00 6.90 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 15.003 10.939 1.511 1.00 7.24 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 16.319 11.280 1.548 1.00 7.46 ? 6 DG A C4 1
HETATM 121 C C1 . DMM B 2 . ? 15.402 18.142 5.154 1.00 9.96 ? 7 DMM A C1 1
HETATM 122 C C2 . DMM B 2 . ? 16.586 18.856 5.218 1.00 10.34 ? 7 DMM A C2 1
HETATM 123 C C3 . DMM B 2 . ? 17.883 18.167 5.181 1.00 10.32 ? 7 DMM A C3 1
HETATM 124 C C4 . DMM B 2 . ? 17.905 16.707 5.075 1.00 10.07 ? 7 DMM A C4 1
HETATM 125 O O4 . DMM B 2 . ? 19.005 15.973 4.990 1.00 10.80 ? 7 DMM A O4 1
HETATM 126 C C5 . DMM B 2 . ? 16.657 16.058 5.017 1.00 9.80 ? 7 DMM A C5 1
HETATM 127 C C6 . DMM B 2 . ? 16.626 14.562 4.926 1.00 9.42 ? 7 DMM A C6 1
HETATM 128 O O6 . DMM B 2 . ? 17.602 13.799 4.873 1.00 9.59 ? 7 DMM A O6 1
HETATM 129 C C7 . DMM B 2 . ? 15.298 13.887 4.889 1.00 9.27 ? 7 DMM A C7 1
HETATM 130 C C8 . DMM B 2 . ? 15.256 12.495 4.815 1.00 9.54 ? 7 DMM A C8 1
HETATM 131 O O8 . DMM B 2 . ? 16.305 11.744 4.746 1.00 9.53 ? 7 DMM A O8 1
HETATM 132 C C9 . DMM B 2 . ? 13.977 11.887 4.804 1.00 9.85 ? 7 DMM A C9 1
HETATM 133 C C10 . DMM B 2 . ? 13.951 10.304 4.698 1.00 10.70 ? 7 DMM A C10 1
HETATM 134 O O10 . DMM B 2 . ? 14.671 9.961 5.907 1.00 11.16 ? 7 DMM A O10 1
HETATM 135 C C11 . DMM B 2 . ? 12.599 9.716 4.651 1.00 10.68 ? 7 DMM A C11 1
HETATM 136 C C12 . DMM B 2 . ? 11.488 10.509 5.239 1.00 10.88 ? 7 DMM A C12 1
HETATM 137 O O12 . DMM B 2 . ? 11.561 10.515 6.719 1.00 11.21 ? 7 DMM A O12 1
HETATM 138 C C13 . DMM B 2 . ? 10.144 9.826 4.942 1.00 11.76 ? 7 DMM A C13 1
HETATM 139 O O13 . DMM B 2 . ? 9.528 10.295 4.014 1.00 12.18 ? 7 DMM A O13 1
HETATM 140 C C14 . DMM B 2 . ? 9.559 8.723 5.833 1.00 12.77 ? 7 DMM A C14 1
HETATM 141 O O14 . DMM B 2 . ? 8.389 7.981 5.600 1.00 13.69 ? 7 DMM A O14 1
HETATM 142 C C15 . DMM B 2 . ? 11.448 12.000 4.810 1.00 10.40 ? 7 DMM A C15 1
HETATM 143 C C16 . DMM B 2 . ? 12.770 12.568 4.842 1.00 9.71 ? 7 DMM A C16 1
HETATM 144 C C17 . DMM B 2 . ? 12.874 13.979 4.916 1.00 9.25 ? 7 DMM A C17 1
HETATM 145 O O17 . DMM B 2 . ? 11.732 14.730 4.974 1.00 9.20 ? 7 DMM A O17 1
HETATM 146 C C18 . DMM B 2 . ? 14.053 14.682 4.969 1.00 9.26 ? 7 DMM A C18 1
HETATM 147 C C19 . DMM B 2 . ? 14.148 16.125 5.059 1.00 9.42 ? 7 DMM A C19 1
HETATM 148 O O19 . DMM B 2 . ? 13.172 16.856 5.107 1.00 9.61 ? 7 DMM A O19 1
HETATM 149 C C20 . DMM B 2 . ? 15.461 16.727 5.059 1.00 9.79 ? 7 DMM A C20 1
HETATM 150 C C21 . DMM B 2 . ? 20.380 16.665 5.054 1.00 10.37 ? 7 DMM A C21 1
HETATM 151 C "C1'" . DMM B 2 . ? 15.422 8.813 6.013 1.00 12.10 ? 7 DMM A "C1'" 1
HETATM 152 C "C2'" . DMM B 2 . ? 16.319 8.988 7.201 1.00 12.29 ? 7 DMM A "C2'" 1
HETATM 153 C "C3'" . DMM B 2 . ? 15.484 8.861 8.511 1.00 12.42 ? 7 DMM A "C3'" 1
HETATM 154 C "C4'" . DMM B 2 . ? 14.635 7.599 8.469 1.00 12.67 ? 7 DMM A "C4'" 1
HETATM 155 O "O4'" . DMM B 2 . ? 15.526 6.420 8.357 1.00 12.66 ? 7 DMM A "O4'" 1
HETATM 156 C "C5'" . DMM B 2 . ? 13.653 7.666 7.302 1.00 12.65 ? 7 DMM A "C5'" 1
HETATM 157 O "O5'" . DMM B 2 . ? 14.567 7.638 6.082 1.00 12.28 ? 7 DMM A "O5'" 1
HETATM 158 C "C6'" . DMM B 2 . ? 12.753 6.426 7.185 1.00 12.77 ? 7 DMM A "C6'" 1
HETATM 159 N "N3'" . DMM B 2 . ? 16.477 8.729 9.635 1.00 12.89 ? 7 DMM A "N3'" 1
HETATM 160 C C33 . DMM B 2 . ? 15.678 8.577 10.871 1.00 13.15 ? 7 DMM A C33 1
HETATM 161 C C23 . DMM B 2 . ? 16.727 8.349 12.032 1.00 13.10 ? 7 DMM A C23 1
HETATM 162 O O16 . DMM B 2 . ? 17.483 9.595 12.043 1.00 13.15 ? 7 DMM A O16 1
HETATM 163 C C63 . DMM B 2 . ? 18.417 9.651 10.887 1.00 13.17 ? 7 DMM A C63 1
HETATM 164 C C53 . DMM B 2 . ? 17.438 9.725 9.619 1.00 12.88 ? 7 DMM A C53 1
HETATM 165 O O23 . DMM B 2 . ? 17.607 7.171 11.995 1.00 13.24 ? 7 DMM A O23 1
HETATM 166 C C73 . DMM B 2 . ? 18.423 6.434 12.960 1.00 14.07 ? 7 DMM A C73 1
HETATM 167 O O . HOH C 3 . ? 16.347 18.853 11.794 1.00 22.78 ? 8 HOH A O 1
HETATM 168 O O . HOH C 3 . ? 12.900 18.771 10.574 1.00 30.51 ? 9 HOH A O 1
HETATM 169 O O . HOH C 3 . ? 18.215 19.486 8.946 1.00 27.67 ? 10 HOH A O 1
HETATM 170 O O . HOH C 3 . ? 18.873 7.011 8.755 1.00 18.60 ? 11 HOH A O 1
HETATM 171 O O . HOH C 3 . ? 22.588 15.622 7.695 1.00 19.27 ? 12 HOH A O 1
HETATM 172 O O . HOH C 3 . ? 14.216 5.745 3.892 1.00 25.72 ? 13 HOH A O 1
HETATM 173 O O . HOH C 3 . ? 21.342 23.749 16.041 1.00 36.08 ? 14 HOH A O 1
HETATM 174 O O . HOH C 3 . ? 19.759 14.590 2.482 1.00 34.13 ? 15 HOH A O 1
HETATM 175 O O . HOH C 3 . ? 6.280 9.086 3.564 1.00 48.29 ? 16 HOH A O 1
HETATM 176 O O . HOH C 3 . ? 8.572 11.820 1.745 1.00 28.72 ? 17 HOH A O 1
HETATM 177 O O . HOH C 3 . ? 21.769 10.855 0.928 1.00 47.37 ? 18 HOH A O 1
HETATM 178 O O . HOH C 3 . ? 10.993 9.559 0.795 1.00 23.42 ? 19 HOH A O 1
HETATM 179 O O . HOH C 3 . ? 13.957 8.552 1.395 1.00 18.71 ? 20 HOH A O 1
HETATM 180 O O . HOH C 3 . ? 14.477 22.855 15.618 1.00 37.00 ? 21 HOH A O 1
HETATM 181 O O . HOH C 3 . ? 9.202 3.181 2.975 1.00 38.50 ? 22 HOH A O 1
HETATM 182 O O . HOH C 3 . ? 15.093 4.651 10.298 1.00 28.45 ? 23 HOH A O 1
HETATM 183 O O . HOH C 3 . ? 24.483 17.464 17.277 1.00 24.71 ? 24 HOH A O 1
HETATM 184 O O . HOH C 3 . ? 5.141 5.883 6.040 1.00 33.68 ? 25 HOH A O 1
HETATM 185 O O . HOH C 3 . ? 7.840 2.953 5.504 1.00 32.89 ? 26 HOH A O 1
HETATM 186 O O . HOH C 3 . ? 8.847 5.554 6.745 1.00 35.55 ? 27 HOH A O 1
HETATM 187 O O . HOH C 3 . ? 17.202 5.236 6.183 1.00 26.15 ? 28 HOH A O 1
HETATM 188 O O . HOH C 3 . ? 24.719 10.709 4.852 1.00 34.87 ? 29 HOH A O 1
HETATM 189 O O . HOH C 3 . ? 10.563 6.145 3.887 1.00 52.99 ? 30 HOH A O 1
HETATM 190 O O . HOH C 3 . ? 20.341 21.041 12.605 1.00 36.67 ? 31 HOH A O 1
HETATM 191 O O . HOH C 3 . ? 14.320 20.923 11.306 1.00 41.25 ? 32 HOH A O 1
HETATM 192 O O . HOH C 3 . ? 3.369 9.294 1.972 1.00 53.52 ? 33 HOH A O 1
HETATM 193 O O . HOH C 3 . ? 27.014 9.005 6.745 1.00 44.02 ? 34 HOH A O 1
HETATM 194 O O . HOH C 3 . ? 22.036 25.782 18.348 1.00 45.50 ? 35 HOH A O 1
HETATM 195 O O . HOH C 3 . ? 25.524 16.710 10.537 1.00 30.61 ? 36 HOH A O 1
HETATM 196 O O . HOH C 3 . ? 18.091 16.921 1.517 1.00 28.50 ? 37 HOH A O 1
HETATM 197 O O . HOH C 3 . ? 13.878 19.941 8.310 1.00 36.47 ? 38 HOH A O 1
HETATM 198 O O . HOH C 3 . ? 26.747 14.559 12.107 1.00 29.61 ? 39 HOH A O 1
HETATM 199 O O . HOH C 3 . ? 21.004 18.434 8.925 1.00 39.27 ? 40 HOH A O 1
HETATM 200 O O . HOH C 3 . ? 17.610 19.736 1.776 1.00 41.11 ? 41 HOH A O 1
HETATM 201 O O . HOH C 3 . ? 20.855 15.771 0.345 1.00 48.07 ? 42 HOH A O 1
HETATM 202 O O . HOH C 3 . ? 10.914 17.332 12.006 1.00 37.13 ? 43 HOH A O 1
HETATM 203 O O . HOH C 3 . ? 14.244 25.164 13.608 1.00 45.69 ? 44 HOH A O 1
HETATM 204 O O . HOH C 3 . ? 6.147 5.920 3.070 1.00 47.94 ? 45 HOH A O 1
HETATM 205 O O . HOH C 3 . ? 11.983 24.854 5.955 1.00 35.96 ? 46 HOH A O 1
HETATM 206 O O . HOH C 3 . ? 23.741 14.826 5.234 1.00 33.35 ? 47 HOH A O 1
HETATM 207 O O . HOH C 3 . ? 14.477 21.286 3.341 1.00 33.78 ? 48 HOH A O 1
HETATM 208 O O . HOH C 3 . ? 25.723 14.418 2.010 1.00 44.02 ? 49 HOH A O 1
HETATM 209 O O . HOH C 3 . ? 11.957 6.204 -0.164 1.00 47.07 ? 50 HOH A O 1
HETATM 210 O O . HOH C 3 . ? 15.352 5.312 0.339 1.00 29.22 ? 51 HOH A O 1
HETATM 211 O O . HOH C 3 . ? 24.632 8.566 8.495 1.00 40.44 ? 52 HOH A O 1
HETATM 212 O O . HOH C 3 . ? 18.479 3.858 11.841 1.00 40.72 ? 53 HOH A O 1
HETATM 213 O O . HOH C 3 . ? 1.676 13.859 1.103 1.00 35.44 ? 54 HOH A O 1
#