data_211D
#
_entry.id 211D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 211D pdb_0000211d 10.2210/pdb211d/pdb
RCSB ZDFB42 ? ?
WWPDB D_1000177569 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1996-03-22
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2018-04-18
5 'Structure model' 1 4 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Database references'
6 5 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' diffrn_detector
2 5 'Structure model' chem_comp_atom
3 5 'Structure model' chem_comp_bond
4 5 'Structure model' database_2
5 5 'Structure model' struct_conn
6 5 'Structure model' struct_conn_type
7 5 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_diffrn_detector.detector'
2 5 'Structure model' '_database_2.pdbx_DOI'
3 5 'Structure model' '_database_2.pdbx_database_accession'
4 5 'Structure model' '_struct_conn.conn_type_id'
5 5 'Structure model' '_struct_conn.id'
6 5 'Structure model' '_struct_conn.pdbx_dist_value'
7 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
8 5 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id'
9 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
10 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
11 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'
12 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
13 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'
14 5 'Structure model' '_struct_conn.ptnr1_label_seq_id'
15 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
16 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
17 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
18 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'
19 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'
20 5 'Structure model' '_struct_conn.ptnr2_label_seq_id'
21 5 'Structure model' '_struct_conn_type.id'
22 5 'Structure model' '_struct_site.pdbx_auth_asym_id'
23 5 'Structure model' '_struct_site.pdbx_auth_comp_id'
24 5 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 211D
_pdbx_database_status.recvd_initial_deposition_date 1995-06-13
_pdbx_database_status.deposit_site BNL
_pdbx_database_status.process_site NDB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Parkinson, G.N.' 1
'Arvantis, G.M.' 2
'Lessinger, L.' 3
'Ginell, S.L.' 4
'Jones, R.' 5
'Gaffney, B.' 6
'Berman, H.M.' 7
#
_citation.id primary
_citation.title
'Crystal and molecular structure of a new Z-DNA crystal form: d[CGT(2-NH2-A)CG] and its platinated derivative.'
_citation.journal_abbrev Biochemistry
_citation.journal_volume 34
_citation.page_first 15487
_citation.page_last 15495
_citation.year 1995
_citation.journal_id_ASTM BICHAW
_citation.country US
_citation.journal_id_ISSN 0006-2960
_citation.journal_id_CSD 0033
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 7492550
_citation.pdbx_database_id_DOI 10.1021/bi00047a014
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Parkinson, G.N.' 1 ?
primary 'Arvanitis, G.M.' 2 ?
primary 'Lessinger, L.' 3 ?
primary 'Ginell, S.L.' 4 ?
primary 'Jones, R.' 5 ?
primary 'Gaffney, B.' 6 ?
primary 'Berman, H.M.' 7 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*GP*TP*(1AP)P*CP*(PT(NH3)3)G)-3')
;
1824.231 1 ? ? ? ?
2 non-polymer syn 'PLATINUM TRIAMINE ION' 246.170 1 ? ? ? ?
3 non-polymer syn SPERMINE 202.340 1 ? ? ? ?
4 water nat water 18.015 23 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(1AP)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGTACG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'PLATINUM TRIAMINE ION' PTN
3 SPERMINE SPM
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DT n
1 4 1AP n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
1AP 'DNA linking' n '2,6-DIAMINOPURINE NUCLEOTIDE' ? 'C10 H15 N6 O6 P' 346.236
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
PTN non-polymer . 'PLATINUM TRIAMINE ION' ? 'H9 N3 Pt 2' 246.170
SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DT 3 3 3 DT T A . n
A 1 4 1AP 4 4 4 1AP +A A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG +G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PTN 1 7 6 PTN G A .
C 3 SPM 1 8 7 SPM SPM A .
D 4 HOH 1 9 8 HOH HOH A .
D 4 HOH 2 10 9 HOH HOH A .
D 4 HOH 3 11 10 HOH HOH A .
D 4 HOH 4 12 11 HOH HOH A .
D 4 HOH 5 13 12 HOH HOH A .
D 4 HOH 6 14 13 HOH HOH A .
D 4 HOH 7 15 14 HOH HOH A .
D 4 HOH 8 16 15 HOH HOH A .
D 4 HOH 9 17 16 HOH HOH A .
D 4 HOH 10 18 17 HOH HOH A .
D 4 HOH 11 19 18 HOH HOH A .
D 4 HOH 12 20 19 HOH HOH A .
D 4 HOH 13 21 20 HOH HOH A .
D 4 HOH 14 22 21 HOH HOH A .
D 4 HOH 15 23 22 HOH HOH A .
D 4 HOH 16 24 23 HOH HOH A .
D 4 HOH 17 25 24 HOH HOH A .
D 4 HOH 18 26 25 HOH HOH A .
D 4 HOH 19 27 26 HOH HOH A .
D 4 HOH 20 28 27 HOH HOH A .
D 4 HOH 21 29 28 HOH HOH A .
D 4 HOH 22 30 29 HOH HOH A .
D 4 HOH 23 31 30 HOH HOH A .
#
_software.name X-PLOR
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 211D
_cell.length_a 25.193
_cell.length_b 25.193
_cell.length_c 38.948
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 6
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 211D
_symmetry.space_group_name_H-M 'P 32 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 154
#
_exptl.entry_id 211D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas 1.4500
_exptl_crystal.density_Matthews 1.89
_exptl_crystal.density_percent_sol 34.91
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 SPERMINE ? ? ?
1 4 1 MGCL2 ? ? ?
1 5 1 'NA CACODYLATE' ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 277.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'ENRAF-NONIUS CAD4'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'ELLIOTT GX-21'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 211D
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F 2.000
_reflns.d_resolution_low ?
_reflns.d_resolution_high 1.600
_reflns.number_obs 1741
_reflns.number_all 2129
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 211D
_refine.ls_number_reflns_obs 1583
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 4.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 12.000
_refine.ls_d_res_high 1.600
_refine.ls_percent_reflns_obs 70.400
_refine.ls_R_factor_obs 0.17
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.17
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 123
_refine_hist.pdbx_number_atoms_ligand 19
_refine_hist.number_atoms_solvent 23
_refine_hist.number_atoms_total 165
_refine_hist.d_res_high 1.600
_refine_hist.d_res_low 12.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 1.66 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 211D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 211D
_struct.title
'THE CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A) CG] AND ITS PLATINATED DERIVATIVE'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 211D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Z-DNA, DOUBLE HELIX, MODIFIED, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 211D
_struct_ref.pdbx_db_accession 211D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 211D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 211D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 38.9480000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DT 3 "O3'" ? ? ? 1_555 A 1AP 4 P ? ? A DT 3 A 1AP 4 1_555 ? ? ? ? ? ? ? 1.615 ? ?
covale2 covale one ? A 1AP 4 "O3'" ? ? ? 1_555 A DC 5 P A ? A 1AP 4 A DC 5 1_555 ? ? ? ? ? ? ? 1.688 ? ?
covale3 covale one ? A 1AP 4 "O3'" ? ? ? 1_555 A DC 5 P B ? A 1AP 4 A DC 5 1_555 ? ? ? ? ? ? ? 1.589 ? ?
metalc1 metalc ? ? A DG 6 N7 ? ? ? 1_555 B PTN . PT ? ? A DG 6 A PTN 7 1_555 ? ? ? ? ? ? ? 2.245 ? ?
metalc2 metalc ? ? A DG 6 C8 ? ? ? 1_555 B PTN . PT ? ? A DG 6 A PTN 7 1_555 ? ? ? ? ? ? ? 3.079 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 O2 ? ? ? 1_555 A 1AP 4 N2 ? ? A DT 3 A 1AP 4 4_556 ? ? ? ? ? ? 'DT-1AP MISPAIR' ? ? ?
hydrog8 hydrog ? ? A 1AP 4 N2 ? ? ? 1_555 A DT 3 O2 ? ? A 1AP 4 A DT 3 4_556 ? ? ? ? ? ? '1AP-DT MISPAIR' ? ? ?
hydrog9 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 4_556 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 N7 ? A DG 6 ? A DG 6 ? 1_555 PT ? B PTN . ? A PTN 7 ? 1_555 N1 ? B PTN . ? A PTN 7 ? 1_555 87.6 ?
2 N7 ? A DG 6 ? A DG 6 ? 1_555 PT ? B PTN . ? A PTN 7 ? 1_555 N2 ? B PTN . ? A PTN 7 ? 1_555 91.6 ?
3 N1 ? B PTN . ? A PTN 7 ? 1_555 PT ? B PTN . ? A PTN 7 ? 1_555 N2 ? B PTN . ? A PTN 7 ? 1_555 179.1 ?
4 N7 ? A DG 6 ? A DG 6 ? 1_555 PT ? B PTN . ? A PTN 7 ? 1_555 N3 ? B PTN . ? A PTN 7 ? 1_555 156.3 ?
5 N1 ? B PTN . ? A PTN 7 ? 1_555 PT ? B PTN . ? A PTN 7 ? 1_555 N3 ? B PTN . ? A PTN 7 ? 1_555 89.7 ?
6 N2 ? B PTN . ? A PTN 7 ? 1_555 PT ? B PTN . ? A PTN 7 ? 1_555 N3 ? B PTN . ? A PTN 7 ? 1_555 91.1 ?
7 N7 ? A DG 6 ? A DG 6 ? 1_555 PT ? B PTN . ? A PTN 7 ? 1_555 C8 ? A DG 6 ? A DG 6 ? 1_555 22.1 ?
8 N1 ? B PTN . ? A PTN 7 ? 1_555 PT ? B PTN . ? A PTN 7 ? 1_555 C8 ? A DG 6 ? A DG 6 ? 1_555 99.5 ?
9 N2 ? B PTN . ? A PTN 7 ? 1_555 PT ? B PTN . ? A PTN 7 ? 1_555 C8 ? A DG 6 ? A DG 6 ? 1_555 79.6 ?
10 N3 ? B PTN . ? A PTN 7 ? 1_555 PT ? B PTN . ? A PTN 7 ? 1_555 C8 ? A DG 6 ? A DG 6 ? 1_555 169.6 ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A PTN 7 ? 5 'BINDING SITE FOR RESIDUE PTN A 7'
AC2 Software A SPM 8 ? 10 'BINDING SITE FOR RESIDUE SPM A 8'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 5 DG A 2 ? DG A 2 . ? 5_446 ?
2 AC1 5 DC A 5 ? DC A 5 . ? 1_555 ?
3 AC1 5 DG A 6 ? DG A 6 . ? 6_346 ?
4 AC1 5 DG A 6 ? DG A 6 . ? 1_555 ?
5 AC1 5 SPM C . ? SPM A 8 . ? 1_555 ?
6 AC2 10 DG A 2 ? DG A 2 . ? 3_545 ?
7 AC2 10 DT A 3 ? DT A 3 . ? 3_545 ?
8 AC2 10 1AP A 4 ? 1AP A 4 . ? 3_545 ?
9 AC2 10 DC A 5 ? DC A 5 . ? 1_555 ?
10 AC2 10 DG A 6 ? DG A 6 . ? 5_546 ?
11 AC2 10 PTN B . ? PTN A 7 . ? 1_555 ?
12 AC2 10 HOH D . ? HOH A 9 . ? 3_545 ?
13 AC2 10 HOH D . ? HOH A 12 . ? 3_545 ?
14 AC2 10 HOH D . ? HOH A 24 . ? 3_545 ?
15 AC2 10 HOH D . ? HOH A 31 . ? 3_545 ?
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 OP2
_pdbx_validate_symm_contact.auth_asym_id_1 A
_pdbx_validate_symm_contact.auth_comp_id_1 DG
_pdbx_validate_symm_contact.auth_seq_id_1 2
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 C3
_pdbx_validate_symm_contact.auth_asym_id_2 A
_pdbx_validate_symm_contact.auth_comp_id_2 SPM
_pdbx_validate_symm_contact.auth_seq_id_2 8
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 2_444
_pdbx_validate_symm_contact.dist 2.15
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'"
_pdbx_validate_rmsd_bond.auth_asym_id_1 A
_pdbx_validate_rmsd_bond.auth_comp_id_1 1AP
_pdbx_validate_rmsd_bond.auth_seq_id_1 4
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 P
_pdbx_validate_rmsd_bond.auth_asym_id_2 A
_pdbx_validate_rmsd_bond.auth_comp_id_2 DC
_pdbx_validate_rmsd_bond.auth_seq_id_2 5
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 A
_pdbx_validate_rmsd_bond.bond_value 1.688
_pdbx_validate_rmsd_bond.bond_target_value 1.607
_pdbx_validate_rmsd_bond.bond_deviation 0.081
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.012
_pdbx_validate_rmsd_bond.linker_flag Y
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C3'" A 1AP 4 ? ? "O3'" A 1AP 4 ? ? P A DC 5 ? B 133.78 119.70 14.08 1.20 Y
2 1 "O3'" A 1AP 4 ? ? P A DC 5 ? A OP2 A DC 5 ? A 117.86 110.50 7.36 1.10 Y
#
_pdbx_struct_mod_residue.id 1
_pdbx_struct_mod_residue.label_asym_id A
_pdbx_struct_mod_residue.label_comp_id 1AP
_pdbx_struct_mod_residue.label_seq_id 4
_pdbx_struct_mod_residue.auth_asym_id A
_pdbx_struct_mod_residue.auth_comp_id 1AP
_pdbx_struct_mod_residue.auth_seq_id 4
_pdbx_struct_mod_residue.PDB_ins_code ?
_pdbx_struct_mod_residue.parent_comp_id DA
_pdbx_struct_mod_residue.details '2,6-DIAMINOPURINE NUCLEOTIDE'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
1AP N1 N Y N 1
1AP C2 C Y N 2
1AP C4 C Y N 3
1AP C5 C Y N 4
1AP C6 C Y N 5
1AP C8 C Y N 6
1AP N2 N N N 7
1AP N3 N Y N 8
1AP N9 N Y N 9
1AP N7 N Y N 10
1AP N6 N N N 11
1AP P P N N 12
1AP OP1 O N N 13
1AP OP2 O N N 14
1AP "O5'" O N N 15
1AP "C5'" C N N 16
1AP "C4'" C N R 17
1AP "O4'" O N N 18
1AP "C1'" C N R 19
1AP "C2'" C N N 20
1AP "C3'" C N S 21
1AP "O3'" O N N 22
1AP OP3 O N N 23
1AP H81 H N N 24
1AP HN21 H N N 25
1AP HN22 H N N 26
1AP HN61 H N N 27
1AP HN62 H N N 28
1AP H1P H N N 29
1AP H52 H N N 30
1AP H51 H N N 31
1AP H4 H N N 32
1AP H11 H N N 33
1AP H21 H N N 34
1AP H22 H N N 35
1AP H31 H N N 36
1AP HO31 H N N 37
1AP H3P H N N 38
DC OP3 O N N 39
DC P P N N 40
DC OP1 O N N 41
DC OP2 O N N 42
DC "O5'" O N N 43
DC "C5'" C N N 44
DC "C4'" C N R 45
DC "O4'" O N N 46
DC "C3'" C N S 47
DC "O3'" O N N 48
DC "C2'" C N N 49
DC "C1'" C N R 50
DC N1 N N N 51
DC C2 C N N 52
DC O2 O N N 53
DC N3 N N N 54
DC C4 C N N 55
DC N4 N N N 56
DC C5 C N N 57
DC C6 C N N 58
DC HOP3 H N N 59
DC HOP2 H N N 60
DC "H5'" H N N 61
DC "H5''" H N N 62
DC "H4'" H N N 63
DC "H3'" H N N 64
DC "HO3'" H N N 65
DC "H2'" H N N 66
DC "H2''" H N N 67
DC "H1'" H N N 68
DC H41 H N N 69
DC H42 H N N 70
DC H5 H N N 71
DC H6 H N N 72
DG OP3 O N N 73
DG P P N N 74
DG OP1 O N N 75
DG OP2 O N N 76
DG "O5'" O N N 77
DG "C5'" C N N 78
DG "C4'" C N R 79
DG "O4'" O N N 80
DG "C3'" C N S 81
DG "O3'" O N N 82
DG "C2'" C N N 83
DG "C1'" C N R 84
DG N9 N Y N 85
DG C8 C Y N 86
DG N7 N Y N 87
DG C5 C Y N 88
DG C6 C N N 89
DG O6 O N N 90
DG N1 N N N 91
DG C2 C N N 92
DG N2 N N N 93
DG N3 N N N 94
DG C4 C Y N 95
DG HOP3 H N N 96
DG HOP2 H N N 97
DG "H5'" H N N 98
DG "H5''" H N N 99
DG "H4'" H N N 100
DG "H3'" H N N 101
DG "HO3'" H N N 102
DG "H2'" H N N 103
DG "H2''" H N N 104
DG "H1'" H N N 105
DG H8 H N N 106
DG H1 H N N 107
DG H21 H N N 108
DG H22 H N N 109
DT OP3 O N N 110
DT P P N N 111
DT OP1 O N N 112
DT OP2 O N N 113
DT "O5'" O N N 114
DT "C5'" C N N 115
DT "C4'" C N R 116
DT "O4'" O N N 117
DT "C3'" C N S 118
DT "O3'" O N N 119
DT "C2'" C N N 120
DT "C1'" C N R 121
DT N1 N N N 122
DT C2 C N N 123
DT O2 O N N 124
DT N3 N N N 125
DT C4 C N N 126
DT O4 O N N 127
DT C5 C N N 128
DT C7 C N N 129
DT C6 C N N 130
DT HOP3 H N N 131
DT HOP2 H N N 132
DT "H5'" H N N 133
DT "H5''" H N N 134
DT "H4'" H N N 135
DT "H3'" H N N 136
DT "HO3'" H N N 137
DT "H2'" H N N 138
DT "H2''" H N N 139
DT "H1'" H N N 140
DT H3 H N N 141
DT H71 H N N 142
DT H72 H N N 143
DT H73 H N N 144
DT H6 H N N 145
HOH O O N N 146
HOH H1 H N N 147
HOH H2 H N N 148
PTN PT PT N N 149
PTN N1 N N N 150
PTN N2 N N N 151
PTN N3 N N N 152
PTN H11 H N N 153
PTN H12 H N N 154
PTN H13 H N N 155
PTN H21 H N N 156
PTN H22 H N N 157
PTN H23 H N N 158
PTN H31 H N N 159
PTN H32 H N N 160
PTN H33 H N N 161
SPM N1 N N N 162
SPM C2 C N N 163
SPM C3 C N N 164
SPM C4 C N N 165
SPM N5 N N N 166
SPM C6 C N N 167
SPM C7 C N N 168
SPM C8 C N N 169
SPM C9 C N N 170
SPM N10 N N N 171
SPM C11 C N N 172
SPM C12 C N N 173
SPM C13 C N N 174
SPM N14 N N N 175
SPM HN11 H N N 176
SPM HN12 H N N 177
SPM H21 H N N 178
SPM H22 H N N 179
SPM H31 H N N 180
SPM H32 H N N 181
SPM H41 H N N 182
SPM H42 H N N 183
SPM HN5 H N N 184
SPM H61 H N N 185
SPM H62 H N N 186
SPM H71 H N N 187
SPM H72 H N N 188
SPM H81 H N N 189
SPM H82 H N N 190
SPM H91 H N N 191
SPM H92 H N N 192
SPM HN0 H N N 193
SPM H111 H N N 194
SPM H112 H N N 195
SPM H121 H N N 196
SPM H122 H N N 197
SPM H131 H N N 198
SPM H132 H N N 199
SPM HN41 H N N 200
SPM HN42 H N N 201
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1AP N1 C2 sing Y N 1
1AP N1 C6 doub Y N 2
1AP C2 N2 sing N N 3
1AP C2 N3 doub Y N 4
1AP C4 C5 doub Y N 5
1AP C4 N3 sing Y N 6
1AP C4 N9 sing Y N 7
1AP C5 C6 sing Y N 8
1AP C5 N7 sing Y N 9
1AP C6 N6 sing N N 10
1AP C8 N9 sing Y N 11
1AP C8 N7 doub Y N 12
1AP C8 H81 sing N N 13
1AP N2 HN21 sing N N 14
1AP N2 HN22 sing N N 15
1AP N9 "C1'" sing N N 16
1AP N6 HN61 sing N N 17
1AP N6 HN62 sing N N 18
1AP P OP1 sing N N 19
1AP P OP2 doub N N 20
1AP P "O5'" sing N N 21
1AP P OP3 sing N N 22
1AP OP1 H1P sing N N 23
1AP "O5'" "C5'" sing N N 24
1AP "C5'" "C4'" sing N N 25
1AP "C5'" H52 sing N N 26
1AP "C5'" H51 sing N N 27
1AP "C4'" "O4'" sing N N 28
1AP "C4'" "C3'" sing N N 29
1AP "C4'" H4 sing N N 30
1AP "O4'" "C1'" sing N N 31
1AP "C1'" "C2'" sing N N 32
1AP "C1'" H11 sing N N 33
1AP "C2'" "C3'" sing N N 34
1AP "C2'" H21 sing N N 35
1AP "C2'" H22 sing N N 36
1AP "C3'" "O3'" sing N N 37
1AP "C3'" H31 sing N N 38
1AP "O3'" HO31 sing N N 39
1AP OP3 H3P sing N N 40
DC OP3 P sing N N 41
DC OP3 HOP3 sing N N 42
DC P OP1 doub N N 43
DC P OP2 sing N N 44
DC P "O5'" sing N N 45
DC OP2 HOP2 sing N N 46
DC "O5'" "C5'" sing N N 47
DC "C5'" "C4'" sing N N 48
DC "C5'" "H5'" sing N N 49
DC "C5'" "H5''" sing N N 50
DC "C4'" "O4'" sing N N 51
DC "C4'" "C3'" sing N N 52
DC "C4'" "H4'" sing N N 53
DC "O4'" "C1'" sing N N 54
DC "C3'" "O3'" sing N N 55
DC "C3'" "C2'" sing N N 56
DC "C3'" "H3'" sing N N 57
DC "O3'" "HO3'" sing N N 58
DC "C2'" "C1'" sing N N 59
DC "C2'" "H2'" sing N N 60
DC "C2'" "H2''" sing N N 61
DC "C1'" N1 sing N N 62
DC "C1'" "H1'" sing N N 63
DC N1 C2 sing N N 64
DC N1 C6 sing N N 65
DC C2 O2 doub N N 66
DC C2 N3 sing N N 67
DC N3 C4 doub N N 68
DC C4 N4 sing N N 69
DC C4 C5 sing N N 70
DC N4 H41 sing N N 71
DC N4 H42 sing N N 72
DC C5 C6 doub N N 73
DC C5 H5 sing N N 74
DC C6 H6 sing N N 75
DG OP3 P sing N N 76
DG OP3 HOP3 sing N N 77
DG P OP1 doub N N 78
DG P OP2 sing N N 79
DG P "O5'" sing N N 80
DG OP2 HOP2 sing N N 81
DG "O5'" "C5'" sing N N 82
DG "C5'" "C4'" sing N N 83
DG "C5'" "H5'" sing N N 84
DG "C5'" "H5''" sing N N 85
DG "C4'" "O4'" sing N N 86
DG "C4'" "C3'" sing N N 87
DG "C4'" "H4'" sing N N 88
DG "O4'" "C1'" sing N N 89
DG "C3'" "O3'" sing N N 90
DG "C3'" "C2'" sing N N 91
DG "C3'" "H3'" sing N N 92
DG "O3'" "HO3'" sing N N 93
DG "C2'" "C1'" sing N N 94
DG "C2'" "H2'" sing N N 95
DG "C2'" "H2''" sing N N 96
DG "C1'" N9 sing N N 97
DG "C1'" "H1'" sing N N 98
DG N9 C8 sing Y N 99
DG N9 C4 sing Y N 100
DG C8 N7 doub Y N 101
DG C8 H8 sing N N 102
DG N7 C5 sing Y N 103
DG C5 C6 sing N N 104
DG C5 C4 doub Y N 105
DG C6 O6 doub N N 106
DG C6 N1 sing N N 107
DG N1 C2 sing N N 108
DG N1 H1 sing N N 109
DG C2 N2 sing N N 110
DG C2 N3 doub N N 111
DG N2 H21 sing N N 112
DG N2 H22 sing N N 113
DG N3 C4 sing N N 114
DT OP3 P sing N N 115
DT OP3 HOP3 sing N N 116
DT P OP1 doub N N 117
DT P OP2 sing N N 118
DT P "O5'" sing N N 119
DT OP2 HOP2 sing N N 120
DT "O5'" "C5'" sing N N 121
DT "C5'" "C4'" sing N N 122
DT "C5'" "H5'" sing N N 123
DT "C5'" "H5''" sing N N 124
DT "C4'" "O4'" sing N N 125
DT "C4'" "C3'" sing N N 126
DT "C4'" "H4'" sing N N 127
DT "O4'" "C1'" sing N N 128
DT "C3'" "O3'" sing N N 129
DT "C3'" "C2'" sing N N 130
DT "C3'" "H3'" sing N N 131
DT "O3'" "HO3'" sing N N 132
DT "C2'" "C1'" sing N N 133
DT "C2'" "H2'" sing N N 134
DT "C2'" "H2''" sing N N 135
DT "C1'" N1 sing N N 136
DT "C1'" "H1'" sing N N 137
DT N1 C2 sing N N 138
DT N1 C6 sing N N 139
DT C2 O2 doub N N 140
DT C2 N3 sing N N 141
DT N3 C4 sing N N 142
DT N3 H3 sing N N 143
DT C4 O4 doub N N 144
DT C4 C5 sing N N 145
DT C5 C7 sing N N 146
DT C5 C6 doub N N 147
DT C7 H71 sing N N 148
DT C7 H72 sing N N 149
DT C7 H73 sing N N 150
DT C6 H6 sing N N 151
HOH O H1 sing N N 152
HOH O H2 sing N N 153
PTN PT N1 sing N N 154
PTN PT N2 sing N N 155
PTN PT N3 sing N N 156
PTN N1 H11 sing N N 157
PTN N1 H12 sing N N 158
PTN N1 H13 sing N N 159
PTN N2 H21 sing N N 160
PTN N2 H22 sing N N 161
PTN N2 H23 sing N N 162
PTN N3 H31 sing N N 163
PTN N3 H32 sing N N 164
PTN N3 H33 sing N N 165
SPM N1 C2 sing N N 166
SPM N1 HN11 sing N N 167
SPM N1 HN12 sing N N 168
SPM C2 C3 sing N N 169
SPM C2 H21 sing N N 170
SPM C2 H22 sing N N 171
SPM C3 C4 sing N N 172
SPM C3 H31 sing N N 173
SPM C3 H32 sing N N 174
SPM C4 N5 sing N N 175
SPM C4 H41 sing N N 176
SPM C4 H42 sing N N 177
SPM N5 C6 sing N N 178
SPM N5 HN5 sing N N 179
SPM C6 C7 sing N N 180
SPM C6 H61 sing N N 181
SPM C6 H62 sing N N 182
SPM C7 C8 sing N N 183
SPM C7 H71 sing N N 184
SPM C7 H72 sing N N 185
SPM C8 C9 sing N N 186
SPM C8 H81 sing N N 187
SPM C8 H82 sing N N 188
SPM C9 N10 sing N N 189
SPM C9 H91 sing N N 190
SPM C9 H92 sing N N 191
SPM N10 C11 sing N N 192
SPM N10 HN0 sing N N 193
SPM C11 C12 sing N N 194
SPM C11 H111 sing N N 195
SPM C11 H112 sing N N 196
SPM C12 C13 sing N N 197
SPM C12 H121 sing N N 198
SPM C12 H122 sing N N 199
SPM C13 N14 sing N N 200
SPM C13 H131 sing N N 201
SPM C13 H132 sing N N 202
SPM N14 HN41 sing N N 203
SPM N14 HN42 sing N N 204
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
211D 'z-form double helix'
211D 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 4_556 -0.524 -0.173 0.062 -1.926 -9.116 -2.357 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 4_556 0.271 -0.217 0.037 -6.410 -2.353 -0.546 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DT 3 1_555 A 1AP 4 4_556 0.006 -0.155 -0.090 7.511 -2.345 6.436 3 A_DT3:1AP4_A A 3 ? A 4 ? ? ?
1 A 1AP 4 1_555 A DT 3 4_556 -0.006 -0.155 -0.090 -7.511 -2.345 6.436 4 A_1AP4:DT3_A A 4 ? A 3 ? ? ?
1 A DC 5 1_555 A DG 2 4_556 -0.271 -0.217 0.037 6.410 -2.353 -0.546 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 4_556 0.524 -0.173 0.062 1.926 -9.116 -2.357 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 4_556 A DG 2 1_555 A DC 5 4_556 0.026 5.348 3.605 0.540 -6.682 -9.886 -11.653 1.262 5.971 34.095
2.755 -11.940 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 4_556 A DT 3 1_555 A 1AP 4 4_556 0.193 -1.345 3.180 1.593 -9.157 -41.807 2.695 0.413 2.829 12.645
2.200 -42.783 2 AA_DG2DT3:1AP4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DT 3 1_555 A 1AP 4 4_556 A 1AP 4 1_555 A DT 3 4_556 0.000 5.271 3.728 0.000 -6.001 -7.844 -11.197 0.000 6.162 37.463
0.000 -9.873 3 AA_DT31AP4:DT31AP4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A 1AP 4 1_555 A DT 3 4_556 A DC 5 1_555 A DG 2 4_556 -0.193 -1.345 3.180 -1.593 -9.157 -41.807 2.695 -0.413 2.829 12.645
-2.200 -42.783 4 AA_1AP4DC5:DG2DT3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 4_556 A DG 6 1_555 A DC 1 4_556 -0.026 5.348 3.605 -0.540 -6.682 -9.886 -11.653 -1.262 5.971 34.095
-2.755 -11.940 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_atom_sites.entry_id 211D
_atom_sites.fract_transf_matrix[1][1] 0.039694
_atom_sites.fract_transf_matrix[1][2] 0.022917
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.045834
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.025675
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
PT
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 2.540 -11.894 14.501 1.00 23.70 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 2.175 -12.369 15.800 1.00 14.90 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 1.381 -13.658 15.805 1.00 13.31 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 0.122 -13.485 15.107 1.00 12.14 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 2.065 -14.890 15.185 1.00 12.18 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 1.843 -16.077 15.980 1.00 13.59 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 1.304 -15.094 13.889 1.00 12.12 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? -0.083 -14.601 14.260 1.00 11.77 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? -0.891 -14.164 13.108 1.00 11.39 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? -1.681 -15.117 12.469 1.00 12.12 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? -1.657 -16.281 12.893 1.00 13.31 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? -2.443 -14.751 11.414 1.00 10.05 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? -2.429 -13.486 10.996 1.00 9.49 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? -3.199 -13.167 9.957 1.00 9.82 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? -1.621 -12.486 11.628 1.00 10.64 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? -0.875 -12.868 12.673 1.00 10.01 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 2.944 -16.562 17.039 1.00 11.64 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 4.291 -16.263 16.522 1.00 14.92 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 2.578 -17.948 17.386 1.00 13.56 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 2.705 -15.619 18.312 1.00 11.73 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 1.435 -15.601 18.941 1.00 10.51 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 1.396 -14.523 19.995 1.00 10.62 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 1.521 -13.220 19.387 1.00 10.69 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 0.087 -14.519 20.776 1.00 10.38 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 0.297 -15.219 21.997 1.00 9.33 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? -0.207 -13.050 21.018 1.00 11.28 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 0.606 -12.306 19.959 1.00 9.53 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? -0.147 -11.685 18.875 1.00 10.47 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? -0.033 -10.389 18.459 1.00 9.60 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? -0.805 -10.104 17.448 1.00 8.87 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? -1.464 -11.294 17.165 1.00 9.58 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? -2.400 -11.618 16.124 1.00 10.30 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? -2.819 -10.896 15.201 1.00 11.88 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? -2.833 -12.931 16.220 1.00 9.79 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? -2.414 -13.838 17.167 1.00 10.03 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? -2.964 -15.063 17.094 1.00 8.26 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? -1.523 -13.563 18.118 1.00 10.15 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? -1.094 -12.279 18.051 1.00 10.13 ? 2 DG A C4 1
ATOM 39 P P . DT A 1 3 ? -0.796 -16.251 22.506 1.00 10.43 ? 3 DT A P 1
ATOM 40 O OP1 . DT A 1 3 ? -0.336 -16.787 23.809 1.00 12.15 ? 3 DT A OP1 1
ATOM 41 O OP2 . DT A 1 3 ? -1.069 -17.196 21.398 1.00 12.79 ? 3 DT A OP2 1
ATOM 42 O "O5'" . DT A 1 3 ? -2.043 -15.292 22.756 1.00 11.78 ? 3 DT A "O5'" 1
ATOM 43 C "C5'" . DT A 1 3 ? -3.055 -15.624 23.697 1.00 10.17 ? 3 DT A "C5'" 1
ATOM 44 C "C4'" . DT A 1 3 ? -4.387 -15.746 22.997 1.00 11.07 ? 3 DT A "C4'" 1
ATOM 45 O "O4'" . DT A 1 3 ? -4.732 -14.485 22.371 1.00 9.13 ? 3 DT A "O4'" 1
ATOM 46 C "C3'" . DT A 1 3 ? -4.443 -16.809 21.889 1.00 12.23 ? 3 DT A "C3'" 1
ATOM 47 O "O3'" . DT A 1 3 ? -5.660 -17.573 21.987 1.00 14.74 ? 3 DT A "O3'" 1
ATOM 48 C "C2'" . DT A 1 3 ? -4.491 -15.979 20.615 1.00 10.52 ? 3 DT A "C2'" 1
ATOM 49 C "C1'" . DT A 1 3 ? -5.250 -14.754 21.090 1.00 9.08 ? 3 DT A "C1'" 1
ATOM 50 N N1 . DT A 1 3 ? -5.078 -13.547 20.252 1.00 9.13 ? 3 DT A N1 1
ATOM 51 C C2 . DT A 1 3 ? -5.768 -13.535 19.054 1.00 9.87 ? 3 DT A C2 1
ATOM 52 O O2 . DT A 1 3 ? -6.455 -14.465 18.676 1.00 9.77 ? 3 DT A O2 1
ATOM 53 N N3 . DT A 1 3 ? -5.613 -12.402 18.313 1.00 8.48 ? 3 DT A N3 1
ATOM 54 C C4 . DT A 1 3 ? -4.856 -11.300 18.624 1.00 9.32 ? 3 DT A C4 1
ATOM 55 O O4 . DT A 1 3 ? -4.829 -10.354 17.845 1.00 12.08 ? 3 DT A O4 1
ATOM 56 C C5 . DT A 1 3 ? -4.144 -11.369 19.890 1.00 9.08 ? 3 DT A C5 1
ATOM 57 C C7 . DT A 1 3 ? -3.300 -10.210 20.314 1.00 9.00 ? 3 DT A C7 1
ATOM 58 C C6 . DT A 1 3 ? -4.285 -12.482 20.634 1.00 8.14 ? 3 DT A C6 1
HETATM 59 N N1 . 1AP A 1 4 ? -7.033 -12.367 23.100 1.00 8.82 ? 4 1AP A N1 1
HETATM 60 C C2 . 1AP A 1 4 ? -7.480 -13.559 23.533 1.00 8.32 ? 4 1AP A C2 1
HETATM 61 C C4 . 1AP A 1 4 ? -6.114 -13.619 25.269 1.00 11.41 ? 4 1AP A C4 1
HETATM 62 C C5 . 1AP A 1 4 ? -5.549 -12.400 24.937 1.00 11.56 ? 4 1AP A C5 1
HETATM 63 C C6 . 1AP A 1 4 ? -6.053 -11.751 23.792 1.00 8.58 ? 4 1AP A C6 1
HETATM 64 C C8 . 1AP A 1 4 ? -4.487 -13.101 26.644 1.00 13.43 ? 4 1AP A C8 1
HETATM 65 N N2 . 1AP A 1 4 ? -8.432 -14.181 22.829 1.00 8.74 ? 4 1AP A N2 1
HETATM 66 N N3 . 1AP A 1 4 ? -7.100 -14.259 24.601 1.00 10.25 ? 4 1AP A N3 1
HETATM 67 N N9 . 1AP A 1 4 ? -5.424 -14.062 26.381 1.00 11.40 ? 4 1AP A N9 1
HETATM 68 N N7 . 1AP A 1 4 ? -4.521 -12.082 25.821 1.00 13.35 ? 4 1AP A N7 1
HETATM 69 N N6 . 1AP A 1 4 ? -5.624 -10.565 23.365 1.00 11.27 ? 4 1AP A N6 1
HETATM 70 P P . 1AP A 1 4 ? -5.677 -19.004 22.735 1.00 17.21 ? 4 1AP A P 1
HETATM 71 O OP1 . 1AP A 1 4 ? -4.363 -19.670 22.599 1.00 16.71 ? 4 1AP A OP1 1
HETATM 72 O OP2 . 1AP A 1 4 ? -6.914 -19.691 22.300 1.00 19.25 ? 4 1AP A OP2 1
HETATM 73 O "O5'" . 1AP A 1 4 ? -5.804 -18.642 24.280 1.00 18.28 ? 4 1AP A "O5'" 1
HETATM 74 C "C5'" . 1AP A 1 4 ? -6.721 -17.664 24.738 1.00 16.94 ? 4 1AP A "C5'" 1
HETATM 75 C "C4'" . 1AP A 1 4 ? -6.441 -17.323 26.185 1.00 14.83 ? 4 1AP A "C4'" 1
HETATM 76 O "O4'" . 1AP A 1 4 ? -5.357 -16.370 26.243 1.00 14.64 ? 4 1AP A "O4'" 1
HETATM 77 C "C1'" . 1AP A 1 4 ? -5.637 -15.306 27.124 1.00 12.47 ? 4 1AP A "C1'" 1
HETATM 78 C "C2'" . 1AP A 1 4 ? -7.030 -15.571 27.724 1.00 15.22 ? 4 1AP A "C2'" 1
HETATM 79 C "C3'" . 1AP A 1 4 ? -7.639 -16.660 26.850 1.00 15.16 ? 4 1AP A "C3'" 1
HETATM 80 O "O3'" . 1AP A 1 4 ? -8.341 -17.533 27.652 1.00 20.81 ? 4 1AP A "O3'" 1
ATOM 81 P P A DC A 1 5 ? -9.893 -17.963 27.146 0.70 19.51 ? 5 DC A P 1
ATOM 82 P P B DC A 1 5 ? -9.651 -17.398 28.541 0.30 16.78 ? 5 DC A P 1
ATOM 83 O OP1 A DC A 1 5 ? -10.367 -18.934 28.092 0.70 23.56 ? 5 DC A OP1 1
ATOM 84 O OP1 B DC A 1 5 ? -9.280 -16.668 29.775 0.30 17.69 ? 5 DC A OP1 1
ATOM 85 O OP2 A DC A 1 5 ? -10.121 -18.126 25.724 0.70 22.10 ? 5 DC A OP2 1
ATOM 86 O OP2 B DC A 1 5 ? -10.348 -18.681 28.769 0.30 18.82 ? 5 DC A OP2 1
ATOM 87 O "O5'" . DC A 1 5 ? -10.622 -16.570 27.520 1.00 17.68 ? 5 DC A "O5'" 1
ATOM 88 C "C5'" . DC A 1 5 ? -11.943 -16.459 27.927 1.00 13.51 ? 5 DC A "C5'" 1
ATOM 89 C "C4'" . DC A 1 5 ? -12.617 -15.406 27.078 1.00 11.33 ? 5 DC A "C4'" 1
ATOM 90 O "O4'" . DC A 1 5 ? -11.898 -14.154 27.172 1.00 11.33 ? 5 DC A "O4'" 1
ATOM 91 C "C3'" . DC A 1 5 ? -12.627 -15.762 25.585 1.00 13.89 ? 5 DC A "C3'" 1
ATOM 92 O "O3'" . DC A 1 5 ? -13.910 -15.458 25.045 1.00 16.41 ? 5 DC A "O3'" 1
ATOM 93 C "C2'" . DC A 1 5 ? -11.591 -14.827 24.993 1.00 11.55 ? 5 DC A "C2'" 1
ATOM 94 C "C1'" . DC A 1 5 ? -11.779 -13.624 25.871 1.00 9.80 ? 5 DC A "C1'" 1
ATOM 95 N N1 . DC A 1 5 ? -10.672 -12.659 25.863 1.00 8.93 ? 5 DC A N1 1
ATOM 96 C C2 . DC A 1 5 ? -10.635 -11.699 24.843 1.00 8.04 ? 5 DC A C2 1
ATOM 97 O O2 . DC A 1 5 ? -11.494 -11.738 23.960 1.00 10.38 ? 5 DC A O2 1
ATOM 98 N N3 . DC A 1 5 ? -9.658 -10.770 24.837 1.00 8.16 ? 5 DC A N3 1
ATOM 99 C C4 . DC A 1 5 ? -8.734 -10.774 25.794 1.00 6.71 ? 5 DC A C4 1
ATOM 100 N N4 . DC A 1 5 ? -7.812 -9.819 25.760 1.00 7.94 ? 5 DC A N4 1
ATOM 101 C C5 . DC A 1 5 ? -8.728 -11.760 26.839 1.00 8.06 ? 5 DC A C5 1
ATOM 102 C C6 . DC A 1 5 ? -9.702 -12.679 26.830 1.00 7.18 ? 5 DC A C6 1
ATOM 103 P P . DG A 1 6 ? -15.003 -16.623 24.897 1.00 19.40 ? 6 DG A P 1
ATOM 104 O OP1 . DG A 1 6 ? -14.347 -17.831 24.340 1.00 22.06 ? 6 DG A OP1 1
ATOM 105 O OP2 . DG A 1 6 ? -16.134 -15.990 24.180 1.00 22.86 ? 6 DG A OP2 1
ATOM 106 O "O5'" . DG A 1 6 ? -15.438 -16.952 26.398 1.00 18.51 ? 6 DG A "O5'" 1
ATOM 107 C "C5'" . DG A 1 6 ? -16.344 -16.098 27.091 1.00 16.74 ? 6 DG A "C5'" 1
ATOM 108 C "C4'" . DG A 1 6 ? -16.632 -16.657 28.459 1.00 14.24 ? 6 DG A "C4'" 1
ATOM 109 O "O4'" . DG A 1 6 ? -15.415 -16.591 29.227 1.00 13.63 ? 6 DG A "O4'" 1
ATOM 110 C "C3'" . DG A 1 6 ? -17.685 -15.877 29.243 1.00 14.00 ? 6 DG A "C3'" 1
ATOM 111 O "O3'" . DG A 1 6 ? -18.454 -16.779 30.039 1.00 14.70 ? 6 DG A "O3'" 1
ATOM 112 C "C2'" . DG A 1 6 ? -16.869 -14.944 30.114 1.00 12.81 ? 6 DG A "C2'" 1
ATOM 113 C "C1'" . DG A 1 6 ? -15.596 -15.746 30.354 1.00 12.91 ? 6 DG A "C1'" 1
ATOM 114 N N9 . DG A 1 6 ? -14.411 -14.964 30.510 1.00 13.14 ? 6 DG A N9 1
ATOM 115 C C8 . DG A 1 6 ? -13.368 -15.228 31.360 1.00 11.88 ? 6 DG A C8 1
ATOM 116 N N7 . DG A 1 6 ? -12.393 -14.364 31.255 1.00 13.96 ? 6 DG A N7 1
ATOM 117 C C5 . DG A 1 6 ? -12.811 -13.480 30.264 1.00 11.41 ? 6 DG A C5 1
ATOM 118 C C6 . DG A 1 6 ? -12.143 -12.373 29.678 1.00 10.26 ? 6 DG A C6 1
ATOM 119 O O6 . DG A 1 6 ? -11.025 -11.924 29.950 1.00 10.12 ? 6 DG A O6 1
ATOM 120 N N1 . DG A 1 6 ? -12.905 -11.785 28.674 1.00 11.40 ? 6 DG A N1 1
ATOM 121 C C2 . DG A 1 6 ? -14.156 -12.201 28.288 1.00 13.34 ? 6 DG A C2 1
ATOM 122 N N2 . DG A 1 6 ? -14.753 -11.469 27.347 1.00 14.57 ? 6 DG A N2 1
ATOM 123 N N3 . DG A 1 6 ? -14.782 -13.242 28.807 1.00 13.44 ? 6 DG A N3 1
ATOM 124 C C4 . DG A 1 6 ? -14.056 -13.832 29.790 1.00 11.97 ? 6 DG A C4 1
HETATM 125 PT PT . PTN B 2 . ? -10.515 -14.760 32.420 0.30 16.52 ? 7 PTN A PT 1
HETATM 126 N N1 . PTN B 2 . ? -9.512 -14.695 30.662 0.30 15.42 ? 7 PTN A N1 1
HETATM 127 N N2 . PTN B 2 . ? -11.530 -14.835 34.141 0.30 14.18 ? 7 PTN A N2 1
HETATM 128 N N3 . PTN B 2 . ? -8.791 -14.283 33.410 0.30 14.92 ? 7 PTN A N3 1
HETATM 129 N N1 . SPM C 3 . ? -6.908 -16.983 31.281 0.30 42.88 ? 8 SPM A N1 1
HETATM 130 C C2 . SPM C 3 . ? -6.671 -15.509 31.457 0.30 42.75 ? 8 SPM A C2 1
HETATM 131 C C3 . SPM C 3 . ? -5.363 -15.168 32.198 0.30 42.30 ? 8 SPM A C3 1
HETATM 132 C C4 . SPM C 3 . ? -5.630 -14.477 33.492 0.30 41.37 ? 8 SPM A C4 1
HETATM 133 N N5 . SPM C 3 . ? -5.874 -12.959 33.233 0.30 40.28 ? 8 SPM A N5 1
HETATM 134 C C6 . SPM C 3 . ? -4.558 -12.389 33.526 0.30 39.89 ? 8 SPM A C6 1
HETATM 135 C C7 . SPM C 3 . ? -4.351 -12.220 34.908 0.30 39.89 ? 8 SPM A C7 1
HETATM 136 C C8 . SPM C 3 . ? -3.938 -10.616 34.994 0.30 40.50 ? 8 SPM A C8 1
HETATM 137 C C9 . SPM C 3 . ? -3.291 -10.407 33.508 0.30 40.81 ? 8 SPM A C9 1
HETATM 138 N N10 . SPM C 3 . ? -2.713 -9.089 33.189 0.30 41.19 ? 8 SPM A N10 1
HETATM 139 C C11 . SPM C 3 . ? -3.708 -8.380 32.234 0.30 40.47 ? 8 SPM A C11 1
HETATM 140 C C12 . SPM C 3 . ? -3.488 -6.868 32.385 0.30 39.85 ? 8 SPM A C12 1
HETATM 141 C C13 . SPM C 3 . ? -4.599 -6.106 31.696 0.30 39.33 ? 8 SPM A C13 1
HETATM 142 N N14 . SPM C 3 . ? -4.418 -5.876 30.344 0.30 39.02 ? 8 SPM A N14 1
HETATM 143 O O . HOH D 4 . ? -1.986 -17.340 18.670 1.00 14.11 ? 9 HOH A O 1
HETATM 144 O O . HOH D 4 . ? -0.082 -18.652 17.198 1.00 13.96 ? 10 HOH A O 1
HETATM 145 O O . HOH D 4 . ? -1.859 -18.133 15.082 1.00 14.80 ? 11 HOH A O 1
HETATM 146 O O . HOH D 4 . ? -1.258 -19.211 24.905 1.00 26.94 ? 12 HOH A O 1
HETATM 147 O O . HOH D 4 . ? 2.035 -18.092 24.098 1.00 33.23 ? 13 HOH A O 1
HETATM 148 O O . HOH D 4 . ? -3.449 -18.850 26.453 1.00 39.98 ? 14 HOH A O 1
HETATM 149 O O . HOH D 4 . ? -15.475 -13.274 23.454 0.50 23.80 ? 15 HOH A O 1
HETATM 150 O O . HOH D 4 . ? 4.143 -12.075 19.045 1.00 40.32 ? 16 HOH A O 1
HETATM 151 O O . HOH D 4 . ? -9.814 -17.479 22.679 1.00 29.98 ? 17 HOH A O 1
HETATM 152 O O . HOH D 4 . ? -5.768 -17.032 17.200 1.00 35.76 ? 18 HOH A O 1
HETATM 153 O O . HOH D 4 . ? -1.279 -9.445 13.597 1.00 26.52 ? 19 HOH A O 1
HETATM 154 O O . HOH D 4 . ? -9.747 -21.768 28.692 0.50 28.69 ? 20 HOH A O 1
HETATM 155 O O . HOH D 4 . ? -3.549 -10.312 8.938 0.50 24.02 ? 21 HOH A O 1
HETATM 156 O O . HOH D 4 . ? -2.570 -22.011 27.487 0.50 38.07 ? 22 HOH A O 1
HETATM 157 O O . HOH D 4 . ? 5.680 -13.756 16.944 0.50 26.67 ? 23 HOH A O 1
HETATM 158 O O . HOH D 4 . ? 3.597 -16.993 21.886 0.50 38.13 ? 24 HOH A O 1
HETATM 159 O O . HOH D 4 . ? -1.320 -8.587 11.062 0.50 47.24 ? 25 HOH A O 1
HETATM 160 O O . HOH D 4 . ? -11.258 -15.723 20.100 1.00 38.66 ? 26 HOH A O 1
HETATM 161 O O . HOH D 4 . ? -6.821 -19.716 29.687 0.50 26.58 ? 27 HOH A O 1
HETATM 162 O O . HOH D 4 . ? -6.368 -11.992 29.842 1.00 35.47 ? 28 HOH A O 1
HETATM 163 O O . HOH D 4 . ? -6.231 -9.852 28.059 1.00 38.70 ? 29 HOH A O 1
HETATM 164 O O . HOH D 4 . ? -4.524 -9.332 25.931 1.00 29.68 ? 30 HOH A O 1
HETATM 165 O O . HOH D 4 . ? -4.210 -19.087 17.924 0.50 27.83 ? 31 HOH A O 1
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