data_1ZFF
#
_entry.id 1ZFF
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1ZFF pdb_00001zff 10.2210/pdb1zff/pdb
NDB BD0087 ? ?
RCSB RCSB032657 ? ?
WWPDB D_1000032657 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2005-05-10
2 'Structure model' 1 1 2008-04-30
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-10-11
5 'Structure model' 1 4 2019-07-24
6 'Structure model' 1 5 2024-02-14
7 'Structure model' 1 6 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Refinement description'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Refinement description'
6 6 'Structure model' 'Data collection'
7 6 'Structure model' 'Database references'
8 7 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' software
2 5 'Structure model' software
3 6 'Structure model' chem_comp_atom
4 6 'Structure model' chem_comp_bond
5 6 'Structure model' database_2
6 7 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_software.classification'
2 5 'Structure model' '_software.contact_author'
3 5 'Structure model' '_software.contact_author_email'
4 5 'Structure model' '_software.location'
5 5 'Structure model' '_software.name'
6 5 'Structure model' '_software.type'
7 5 'Structure model' '_software.version'
8 6 'Structure model' '_database_2.pdbx_DOI'
9 6 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.entry_id 1ZFF
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2005-04-20
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1P4Y . unspecified
PDB 1P4Z . unspecified
PDB 1DCW . unspecified
PDB 1DCV . unspecified
NDB BD0036 . unspecified
NDB BD0035 . unspecified
NDB BD0033 . unspecified
NDB BD0034 . unspecified
NDB BD0023 . unspecified
NDB BDJ017 . unspecified
PDB 1ZEW . unspecified
PDB 1ZEX . unspecified
PDB 1ZEY . unspecified
PDB 1ZEZ . unspecified
PDB 1ZF0 . unspecified
PDB 1ZF1 . unspecified
PDB 1ZF2 . unspecified
PDB 1ZF3 . unspecified
PDB 1ZF4 . unspecified
PDB 1ZF5 . unspecified
PDB 1ZF6 . unspecified
PDB 1ZF7 . unspecified
PDB 1ZF8 . unspecified
PDB 1ZF9 . unspecified
PDB 1ZFA . unspecified
PDB 1ZFB . unspecified
PDB 1ZFC . unspecified
PDB 1ZFE . unspecified
PDB 1ZFG . unspecified
PDB 1ZFH . unspecified
PDB 1ZFM . unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Hays, F.A.' 1
'Teegarden, A.T.' 2
'Jones, Z.J.R.' 3
'Harms, M.' 4
'Raup, D.' 5
'Watson, J.' 6
'Cavaliere, E.' 7
'Ho, P.S.' 8
#
_citation.id primary
_citation.title 'How sequence defines structure: a crystallographic map of DNA structure and conformation.'
_citation.journal_abbrev Proc.Natl.Acad.Sci.Usa
_citation.journal_volume 102
_citation.page_first 7157
_citation.page_last 7162
_citation.year 2005
_citation.journal_id_ASTM PNASA6
_citation.country US
_citation.journal_id_ISSN 0027-8424
_citation.journal_id_CSD 0040
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 15870206
_citation.pdbx_database_id_DOI 10.1073/pnas.0409455102
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Hays, F.A.' 1 ?
primary 'Teegarden, A.' 2 ?
primary 'Jones, Z.J.' 3 ?
primary 'Harms, M.' 4 ?
primary 'Raup, D.' 5 ?
primary 'Watson, J.' 6 ?
primary 'Cavaliere, E.' 7 ?
primary 'Ho, P.S.' 8 ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description "5'-D(*CP*CP*GP*AP*AP*TP*TP*CP*GP*G)-3'"
_entity.formula_weight 3045.005
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CCGAATTCGG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DC n
1 3 DG n
1 4 DA n
1 5 DA n
1 6 DT n
1 7 DT n
1 8 DC n
1 9 DG n
1 10 DG n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details
;DNA WAS SYNTHESIZED ON AN APPLIED BIOSYSTEMS DNA SYNTHESIZER USING PHOSPHORAMIDITE CHEMISTRY, WITH THE TRITYL-PROTECTING GROUP LEFT INTACT AT THE 5'-TERMINAL NUCLEOTIDE THEN DEPROTECTED BY TREATMENT WITH 3% ACETIC ACID FOR FIFTEEN MINUTES, NEUTRALIZED WITH AMMONIUM HYDROXIDE, AND DESALTED ON A SIGMA G-25 SEPHADEX COLUMN.
;
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DC 2 2 2 DC C A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 DA 4 4 4 DA A A . n
A 1 5 DA 5 5 5 DA A A . n
A 1 6 DT 6 6 6 DT T A . n
A 1 7 DT 7 7 7 DT T A . n
A 1 8 DC 8 8 8 DC C A . n
A 1 9 DG 9 9 9 DG G A . n
A 1 10 DG 10 10 10 DG G A . n
#
loop_
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
_software.pdbx_ordinal
CNS 1.1 ? ? ? ? refinement ? ? ? 1
SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling'
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2
REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ?
3
EPMR . ? ? ? ? phasing ? ? ? 4
DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction'
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 5
#
_cell.entry_id 1ZFF
_cell.length_a 34.292
_cell.length_b 20.318
_cell.length_c 33.482
_cell.angle_alpha 90.00
_cell.angle_beta 112.00
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1ZFF
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 5
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1ZFF
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.78
_exptl_crystal.density_percent_sol 30.74
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_details
'Na Cacodylate, CaCl2, Spermine, MPD in resevoir, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 7.00'
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.details
1 1 1 'Na Cacodylate' ? ? ?
1 2 1 CaCl2 ? ? ?
1 3 1 Spermine ? ? ?
1 4 1 MPD ? ? ?
1 5 1 H2O ? ? ?
1 6 2 'Na Cacodylate' ? ? ?
1 7 2 CaCl2 ? ? ?
1 8 2 MPD ? ? ?
1 9 2 H2O ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 103.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 4'
_diffrn_detector.pdbx_collection_date 2003-05-12
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9795
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 14-BM-D'
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 14-BM-D
_diffrn_source.pdbx_wavelength 0.9795
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1ZFF
_reflns.observed_criterion_sigma_I 0.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 7.90
_reflns.d_resolution_high 0.940
_reflns.number_obs 11437
_reflns.number_all ?
_reflns.percent_possible_obs 81.1
_reflns.pdbx_Rmerge_I_obs 0.046
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 11.2000
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 0.94
_reflns_shell.d_res_low 0.97
_reflns_shell.percent_possible_all 41.6
_reflns_shell.Rmerge_I_obs 0.218
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 2.300
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 1ZFF
_refine.ls_number_reflns_obs 10948
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF 42618.16
_refine.pdbx_data_cutoff_low_absF 0.000000
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 7.72
_refine.ls_d_res_high 0.94
_refine.ls_percent_reflns_obs 82.3
_refine.ls_R_factor_obs 0.428
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.428
_refine.ls_R_factor_R_free 0.444
_refine.ls_R_factor_R_free_error 0.013
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 10.3
_refine.ls_number_reflns_R_free 1133
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.445
_refine.correlation_coeff_Fo_to_Fc_free 0.430
_refine.B_iso_mean 3.03
_refine.aniso_B[1][1] 0.06000
_refine.aniso_B[2][2] -0.10000
_refine.aniso_B[3][3] 0.04000
_refine.aniso_B[1][2] 0.00000
_refine.aniso_B[1][3] 0.00000
_refine.aniso_B[2][3] 0.00000
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.200
_refine.pdbx_solvent_ion_probe_radii 0.800
_refine.pdbx_solvent_shrinkage_radii 0.800
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details
;STRUCTURE IS NOT FULLY REFINED TO ITS LOWEST R VALUES! THIS STRUCTURE WILL BE UPDATED AS THE STRUCTURE BECOMES BETTER REFINED. REFER TO MANUSCRIPT CITATION.
;
_refine.pdbx_starting_model 'NDB ENTRY BD0034'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.076
_refine.pdbx_overall_ESU_R_Free 0.066
_refine.overall_SU_ML 0.136
_refine.overall_SU_B 5.500
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 202
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 202
_refine_hist.d_res_high 0.94
_refine_hist.d_res_low 7.72
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
c_bond_d 0.004 ? 0.021 ? 'X-RAY DIFFRACTION' ?
c_angle_deg 1.280 ? 3.000 ? 'X-RAY DIFFRACTION' ?
c_scbond_it 0.255 ? 3.000 ? 'X-RAY DIFFRACTION' ?
c_scangle_it 0.454 ? 4.500 ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 6
_refine_ls_shell.d_res_high 0.94
_refine_ls_shell.d_res_low 1.00
_refine_ls_shell.number_reflns_R_work 1202
_refine_ls_shell.R_factor_R_work 0.456
_refine_ls_shell.percent_reflns_obs 60.8
_refine_ls_shell.R_factor_R_free 0.427
_refine_ls_shell.R_factor_R_free_error 0.040
_refine_ls_shell.percent_reflns_R_free 10.6
_refine_ls_shell.number_reflns_R_free 142
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_struct.entry_id 1ZFF
_struct.title 'TTC Duplex B-DNA'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.text 'Crystallographic Screen, DNA Structure, Holliday Junction, Molecular Structure, DNA'
_struct_keywords.entry_id 1ZFF
_struct_keywords.pdbx_keywords DNA
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1ZFF
_struct_ref.pdbx_db_accession 1ZFF
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1ZFF
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 10
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1ZFF
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 10
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 10
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 21.7494220392 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 31.0439698186
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 10 N2 ? ? A DC 1 A DG 10 2_656 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ?
hydrog2 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 3 A DC 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 3 A DC 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 3 A DC 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 7 N3 ? ? A DA 4 A DT 7 2_656 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ?
hydrog9 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 6 N3 ? ? A DA 5 A DT 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 6 O4 ? ? A DA 5 A DT 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 6 A DA 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 6 A DA 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 7 A DA 4 2_656 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ?
hydrog14 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 8 A DG 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 8 A DG 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 8 A DG 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 10 A DC 1 2_656 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DC A 1 ? ? 0.096 'SIDE CHAIN'
2 1 DG A 10 ? ? 0.059 'SIDE CHAIN'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
#
_ndb_struct_conf_na.entry_id 1ZFF
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 10 2_656 -1.009 0.480 0.029 0.686 -3.451 9.940 1 A_DC1:DG10_A A 1 ? A 10 ? ? 1
1 A DC 2 1_555 A DG 9 2_656 1.701 -0.771 0.078 2.090 -7.049 -8.876 2 A_DC2:DG9_A A 2 ? A 9 ? 19 1
1 A DG 3 1_555 A DC 8 2_656 -0.535 -0.431 -0.311 -18.124 -5.543 2.617 3 A_DG3:DC8_A A 3 ? A 8 ? 19 1
1 A DA 4 1_555 A DT 7 2_656 -1.788 0.146 0.331 8.241 -8.015 23.942 4 A_DA4:DT7_A A 4 ? A 7 ? ? 1
1 A DA 5 1_555 A DT 6 2_656 0.456 0.374 -0.127 4.432 -12.153 -2.985 5 A_DA5:DT6_A A 5 ? A 6 ? 20 1
1 A DT 6 1_555 A DA 5 2_656 -0.456 0.374 -0.127 -4.432 -12.153 -2.985 6 A_DT6:DA5_A A 6 ? A 5 ? 20 1
1 A DT 7 1_555 A DA 4 2_656 1.788 0.146 0.331 -8.241 -8.014 23.942 7 A_DT7:DA4_A A 7 ? A 4 ? ? 1
1 A DC 8 1_555 A DG 3 2_656 0.535 -0.431 -0.311 18.124 -5.543 2.617 8 A_DC8:DG3_A A 8 ? A 3 ? 19 1
1 A DG 9 1_555 A DC 2 2_656 -1.701 -0.771 0.078 -2.090 -7.049 -8.876 9 A_DG9:DC2_A A 9 ? A 2 ? 19 1
1 A DG 10 1_555 A DC 1 2_656 1.009 0.480 0.029 -0.686 -3.451 9.939 10 A_DG10:DC1_A A 10 ? A 1 ? ? 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 10 2_656 A DC 2 1_555 A DG 9 2_656 -1.107 0.941 3.295 -2.500 11.805 41.265 0.045 1.250 3.483 16.334 3.460
42.919 1 AA_DC1DC2:DG9DG10_AA A 1 ? A 10 ? A 2 ? A 9 ?
1 A DC 2 1_555 A DG 9 2_656 A DG 3 1_555 A DC 8 2_656 1.149 1.473 3.595 5.007 3.651 38.373 1.706 -1.032 3.828 5.510 -7.557
38.851 2 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ?
1 A DG 3 1_555 A DC 8 2_656 A DA 4 1_555 A DT 7 2_656 0.895 0.213 2.692 -5.385 3.936 24.871 -0.406 -3.218 2.451 8.935 12.224
25.736 3 AA_DG3DA4:DT7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ?
1 A DA 4 1_555 A DT 7 2_656 A DA 5 1_555 A DT 6 2_656 -0.771 0.290 3.339 2.510 2.915 40.038 0.086 1.411 3.298 4.245 -3.656
40.215 4 AA_DA4DA5:DT6DT7_AA A 4 ? A 7 ? A 5 ? A 6 ?
1 A DA 5 1_555 A DT 6 2_656 A DT 6 1_555 A DA 5 2_656 0.000 0.336 3.250 0.000 -0.195 40.428 0.507 0.000 3.248 -0.282 0.000
40.429 5 AA_DA5DT6:DA5DT6_AA A 5 ? A 6 ? A 6 ? A 5 ?
1 A DT 6 1_555 A DA 5 2_656 A DT 7 1_555 A DA 4 2_656 0.771 0.290 3.339 -2.510 2.915 40.038 0.086 -1.411 3.298 4.245 3.656
40.215 6 AA_DT6DT7:DA4DA5_AA A 6 ? A 5 ? A 7 ? A 4 ?
1 A DT 7 1_555 A DA 4 2_656 A DC 8 1_555 A DG 3 2_656 -0.895 0.213 2.692 5.385 3.936 24.871 -0.406 3.218 2.451 8.935 -12.225
25.736 7 AA_DT7DC8:DG3DA4_AA A 7 ? A 4 ? A 8 ? A 3 ?
1 A DC 8 1_555 A DG 3 2_656 A DG 9 1_555 A DC 2 2_656 -1.149 1.473 3.595 -5.007 3.651 38.373 1.706 1.032 3.828 5.510 7.557
38.851 8 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ?
1 A DG 9 1_555 A DC 2 2_656 A DG 10 1_555 A DC 1 2_656 1.107 0.941 3.295 2.500 11.805 41.265 0.045 -1.250 3.483 16.334 -3.460
42.919 9 AA_DG9DG10:DC1DC2_AA A 9 ? A 2 ? A 10 ? A 1 ?
#
_pdbx_initial_refinement_model.accession_code 1EN8
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.details 'NDB ENTRY BD0034'
#
_atom_sites.entry_id 1ZFF
_atom_sites.fract_transf_matrix[1][1] 0.029161
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.011782
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.049217
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.032212
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 25.099 15.806 4.203 0.50 3.63 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 24.208 16.307 5.211 0.50 3.52 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 23.158 17.219 4.620 0.50 3.00 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 22.187 16.425 3.899 0.50 2.88 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 22.359 18.021 5.643 0.50 3.32 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 22.068 19.309 5.085 0.50 3.69 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 21.116 17.170 5.862 0.50 2.90 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 20.906 16.496 4.515 0.50 2.35 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 20.349 15.125 4.537 1.00 1.61 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 19.279 14.832 3.687 1.00 1.49 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 18.700 15.764 3.088 1.00 1.41 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 18.882 13.543 3.556 1.00 1.00 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 19.482 12.574 4.263 1.00 1.00 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 19.141 11.282 4.014 1.00 1.00 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 20.489 12.864 5.226 1.00 1.47 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 20.889 14.141 5.328 1.00 1.41 ? 1 DC A C6 1
ATOM 17 P P . DC A 1 2 ? 21.251 20.395 5.944 0.50 3.85 ? 2 DC A P 1
ATOM 18 O OP1 . DC A 1 2 ? 21.404 21.701 5.257 0.50 3.75 ? 2 DC A OP1 1
ATOM 19 O OP2 . DC A 1 2 ? 21.605 20.275 7.386 0.50 3.63 ? 2 DC A OP2 1
ATOM 20 O "O5'" . DC A 1 2 ? 19.741 19.967 5.730 0.50 3.67 ? 2 DC A "O5'" 1
ATOM 21 C "C5'" . DC A 1 2 ? 19.043 20.429 4.579 0.50 3.36 ? 2 DC A "C5'" 1
ATOM 22 C "C4'" . DC A 1 2 ? 17.565 20.185 4.729 0.50 3.52 ? 2 DC A "C4'" 1
ATOM 23 O "O4'" . DC A 1 2 ? 17.318 18.760 4.716 1.00 3.40 ? 2 DC A "O4'" 1
ATOM 24 C "C3'" . DC A 1 2 ? 16.983 20.704 6.041 1.00 3.61 ? 2 DC A "C3'" 1
ATOM 25 O "O3'" . DC A 1 2 ? 15.643 21.106 5.781 1.00 4.17 ? 2 DC A "O3'" 1
ATOM 26 C "C2'" . DC A 1 2 ? 17.023 19.481 6.940 1.00 3.38 ? 2 DC A "C2'" 1
ATOM 27 C "C1'" . DC A 1 2 ? 16.711 18.383 5.932 1.00 2.42 ? 2 DC A "C1'" 1
ATOM 28 N N1 . DC A 1 2 ? 17.100 16.995 6.218 1.00 1.55 ? 2 DC A N1 1
ATOM 29 C C2 . DC A 1 2 ? 16.320 16.036 5.638 1.00 1.00 ? 2 DC A C2 1
ATOM 30 O O2 . DC A 1 2 ? 15.349 16.395 4.964 1.00 1.00 ? 2 DC A O2 1
ATOM 31 N N3 . DC A 1 2 ? 16.597 14.741 5.820 1.00 1.00 ? 2 DC A N3 1
ATOM 32 C C4 . DC A 1 2 ? 17.607 14.381 6.610 1.00 1.33 ? 2 DC A C4 1
ATOM 33 N N4 . DC A 1 2 ? 17.786 13.068 6.810 1.00 1.69 ? 2 DC A N4 1
ATOM 34 C C5 . DC A 1 2 ? 18.446 15.340 7.235 1.00 1.41 ? 2 DC A C5 1
ATOM 35 C C6 . DC A 1 2 ? 18.165 16.638 7.008 1.00 1.32 ? 2 DC A C6 1
ATOM 36 P P . DG A 1 3 ? 15.035 22.401 6.527 1.00 5.29 ? 3 DG A P 1
ATOM 37 O OP1 . DG A 1 3 ? 15.960 23.522 6.230 1.00 5.44 ? 3 DG A OP1 1
ATOM 38 O OP2 . DG A 1 3 ? 14.747 22.035 7.943 1.00 5.59 ? 3 DG A OP2 1
ATOM 39 O "O5'" . DG A 1 3 ? 13.638 22.685 5.820 1.00 4.79 ? 3 DG A "O5'" 1
ATOM 40 C "C5'" . DG A 1 3 ? 13.248 22.033 4.620 1.00 5.19 ? 3 DG A "C5'" 1
ATOM 41 C "C4'" . DG A 1 3 ? 12.145 21.046 4.917 1.00 4.98 ? 3 DG A "C4'" 1
ATOM 42 O "O4'" . DG A 1 3 ? 12.755 19.802 5.347 1.00 4.49 ? 3 DG A "O4'" 1
ATOM 43 C "C3'" . DG A 1 3 ? 11.159 21.467 6.015 1.00 5.11 ? 3 DG A "C3'" 1
ATOM 44 O "O3'" . DG A 1 3 ? 9.796 21.273 5.586 1.00 6.08 ? 3 DG A "O3'" 1
ATOM 45 C "C2'" . DG A 1 3 ? 11.531 20.562 7.190 1.00 4.28 ? 3 DG A "C2'" 1
ATOM 46 C "C1'" . DG A 1 3 ? 12.113 19.308 6.524 1.00 3.81 ? 3 DG A "C1'" 1
ATOM 47 N N9 . DG A 1 3 ? 13.101 18.541 7.310 1.00 2.41 ? 3 DG A N9 1
ATOM 48 C C8 . DG A 1 3 ? 14.147 19.060 8.044 1.00 1.98 ? 3 DG A C8 1
ATOM 49 N N7 . DG A 1 3 ? 14.897 18.145 8.605 1.00 1.91 ? 3 DG A N7 1
ATOM 50 C C5 . DG A 1 3 ? 14.313 16.935 8.246 1.00 1.61 ? 3 DG A C5 1
ATOM 51 C C6 . DG A 1 3 ? 14.716 15.581 8.559 1.00 1.45 ? 3 DG A C6 1
ATOM 52 O O6 . DG A 1 3 ? 15.713 15.186 9.214 1.00 1.54 ? 3 DG A O6 1
ATOM 53 N N1 . DG A 1 3 ? 13.838 14.651 8.005 1.00 1.00 ? 3 DG A N1 1
ATOM 54 C C2 . DG A 1 3 ? 12.734 14.968 7.243 1.00 1.05 ? 3 DG A C2 1
ATOM 55 N N2 . DG A 1 3 ? 12.006 13.927 6.821 1.00 1.00 ? 3 DG A N2 1
ATOM 56 N N3 . DG A 1 3 ? 12.365 16.215 6.923 1.00 1.25 ? 3 DG A N3 1
ATOM 57 C C4 . DG A 1 3 ? 13.193 17.145 7.457 1.00 1.85 ? 3 DG A C4 1
ATOM 58 P P . DA A 1 4 ? 8.664 20.850 6.664 1.00 7.27 ? 4 DA A P 1
ATOM 59 O OP1 . DA A 1 4 ? 7.349 20.908 5.956 1.00 6.66 ? 4 DA A OP1 1
ATOM 60 O OP2 . DA A 1 4 ? 8.850 21.607 7.927 1.00 6.79 ? 4 DA A OP2 1
ATOM 61 O "O5'" . DA A 1 4 ? 8.986 19.313 6.927 1.00 5.92 ? 4 DA A "O5'" 1
ATOM 62 C "C5'" . DA A 1 4 ? 8.805 18.324 5.916 1.00 5.71 ? 4 DA A "C5'" 1
ATOM 63 C "C4'" . DA A 1 4 ? 7.943 17.213 6.459 1.00 5.47 ? 4 DA A "C4'" 1
ATOM 64 O "O4'" . DA A 1 4 ? 8.706 16.361 7.337 1.00 4.83 ? 4 DA A "O4'" 1
ATOM 65 C "C3'" . DA A 1 4 ? 6.827 17.791 7.312 0.60 5.24 ? 4 DA A "C3'" 1
ATOM 66 O "O3'" . DA A 1 4 ? 5.655 17.013 7.157 0.60 5.42 ? 4 DA A "O3'" 1
ATOM 67 C "C2'" . DA A 1 4 ? 7.389 17.743 8.725 1.00 4.99 ? 4 DA A "C2'" 1
ATOM 68 C "C1'" . DA A 1 4 ? 8.326 16.542 8.691 1.00 4.22 ? 4 DA A "C1'" 1
ATOM 69 N N9 . DA A 1 4 ? 9.559 16.724 9.454 1.00 3.47 ? 4 DA A N9 1
ATOM 70 C C8 . DA A 1 4 ? 10.109 17.894 9.926 1.00 3.58 ? 4 DA A C8 1
ATOM 71 N N7 . DA A 1 4 ? 11.238 17.722 10.568 1.00 3.47 ? 4 DA A N7 1
ATOM 72 C C5 . DA A 1 4 ? 11.443 16.349 10.513 1.00 2.62 ? 4 DA A C5 1
ATOM 73 C C6 . DA A 1 4 ? 12.459 15.526 11.011 1.00 2.43 ? 4 DA A C6 1
ATOM 74 N N6 . DA A 1 4 ? 13.512 15.984 11.679 1.00 2.00 ? 4 DA A N6 1
ATOM 75 N N1 . DA A 1 4 ? 12.357 14.192 10.795 1.00 2.26 ? 4 DA A N1 1
ATOM 76 C C2 . DA A 1 4 ? 11.301 13.737 10.113 1.00 2.31 ? 4 DA A C2 1
ATOM 77 N N3 . DA A 1 4 ? 10.285 14.412 9.595 1.00 2.12 ? 4 DA A N3 1
ATOM 78 C C4 . DA A 1 4 ? 10.417 15.726 9.833 1.00 2.67 ? 4 DA A C4 1
ATOM 79 P P . DA A 1 5 ? 4.471 17.167 8.214 0.40 5.71 ? 5 DA A P 1
ATOM 80 O OP1 . DA A 1 5 ? 3.212 17.027 7.454 0.60 5.44 ? 5 DA A OP1 1
ATOM 81 O OP2 . DA A 1 5 ? 4.714 18.385 9.028 0.60 5.09 ? 5 DA A OP2 1
ATOM 82 O "O5'" . DA A 1 5 ? 4.678 15.865 9.096 0.60 5.40 ? 5 DA A "O5'" 1
ATOM 83 C "C5'" . DA A 1 5 ? 5.044 14.649 8.457 0.60 5.05 ? 5 DA A "C5'" 1
ATOM 84 C "C4'" . DA A 1 5 ? 5.368 13.605 9.494 0.60 4.53 ? 5 DA A "C4'" 1
ATOM 85 O "O4'" . DA A 1 5 ? 6.631 13.894 10.140 0.60 4.38 ? 5 DA A "O4'" 1
ATOM 86 C "C3'" . DA A 1 5 ? 4.341 13.594 10.618 0.60 4.69 ? 5 DA A "C3'" 1
ATOM 87 O "O3'" . DA A 1 5 ? 4.339 12.284 11.170 0.60 4.66 ? 5 DA A "O3'" 1
ATOM 88 C "C2'" . DA A 1 5 ? 4.956 14.548 11.623 0.60 4.20 ? 5 DA A "C2'" 1
ATOM 89 C "C1'" . DA A 1 5 ? 6.386 14.078 11.531 0.60 3.56 ? 5 DA A "C1'" 1
ATOM 90 N N9 . DA A 1 5 ? 7.426 14.944 12.089 0.60 2.93 ? 5 DA A N9 1
ATOM 91 C C8 . DA A 1 5 ? 7.465 16.305 12.266 0.60 2.75 ? 5 DA A C8 1
ATOM 92 N N7 . DA A 1 5 ? 8.567 16.731 12.842 1.00 2.65 ? 5 DA A N7 1
ATOM 93 C C5 . DA A 1 5 ? 9.307 15.575 13.048 1.00 1.90 ? 5 DA A C5 1
ATOM 94 C C6 . DA A 1 5 ? 10.577 15.343 13.614 1.00 1.72 ? 5 DA A C6 1
ATOM 95 N N6 . DA A 1 5 ? 11.380 16.305 14.082 1.00 1.89 ? 5 DA A N6 1
ATOM 96 N N1 . DA A 1 5 ? 11.007 14.066 13.669 1.00 1.52 ? 5 DA A N1 1
ATOM 97 C C2 . DA A 1 5 ? 10.220 13.095 13.178 1.00 1.34 ? 5 DA A C2 1
ATOM 98 N N3 . DA A 1 5 ? 9.023 13.187 12.611 1.00 1.78 ? 5 DA A N3 1
ATOM 99 C C4 . DA A 1 5 ? 8.617 14.469 12.580 0.60 2.34 ? 5 DA A C4 1
ATOM 100 P P . DT A 1 6 ? 2.961 11.615 11.629 0.60 5.14 ? 6 DT A P 1
ATOM 101 O OP1 . DT A 1 6 ? 2.234 11.215 10.399 0.60 5.20 ? 6 DT A OP1 1
ATOM 102 O OP2 . DT A 1 6 ? 2.306 12.507 12.616 0.60 5.51 ? 6 DT A OP2 1
ATOM 103 O "O5'" . DT A 1 6 ? 3.442 10.284 12.365 0.60 5.46 ? 6 DT A "O5'" 1
ATOM 104 C "C5'" . DT A 1 6 ? 4.365 9.386 11.737 0.60 5.14 ? 6 DT A "C5'" 1
ATOM 105 C "C4'" . DT A 1 6 ? 5.289 8.775 12.766 0.60 5.64 ? 6 DT A "C4'" 1
ATOM 106 O "O4'" . DT A 1 6 ? 6.309 9.729 13.166 0.60 5.71 ? 6 DT A "O4'" 1
ATOM 107 C "C3'" . DT A 1 6 ? 4.585 8.347 14.052 0.50 5.58 ? 6 DT A "C3'" 1
ATOM 108 O "O3'" . DT A 1 6 ? 5.138 7.132 14.561 0.50 5.72 ? 6 DT A "O3'" 1
ATOM 109 C "C2'" . DT A 1 6 ? 4.893 9.483 15.003 0.60 5.65 ? 6 DT A "C2'" 1
ATOM 110 C "C1'" . DT A 1 6 ? 6.290 9.883 14.579 0.60 5.29 ? 6 DT A "C1'" 1
ATOM 111 N N1 . DT A 1 6 ? 6.618 11.285 14.901 1.00 4.95 ? 6 DT A N1 1
ATOM 112 C C2 . DT A 1 6 ? 7.819 11.553 15.512 1.00 4.81 ? 6 DT A C2 1
ATOM 113 O O2 . DT A 1 6 ? 8.614 10.683 15.797 1.00 5.15 ? 6 DT A O2 1
ATOM 114 N N3 . DT A 1 6 ? 8.045 12.884 15.778 1.00 4.21 ? 6 DT A N3 1
ATOM 115 C C4 . DT A 1 6 ? 7.205 13.946 15.511 1.00 4.07 ? 6 DT A C4 1
ATOM 116 O O4 . DT A 1 6 ? 7.566 15.095 15.799 1.00 3.43 ? 6 DT A O4 1
ATOM 117 C C5 . DT A 1 6 ? 5.943 13.586 14.892 1.00 4.38 ? 6 DT A C5 1
ATOM 118 C C7 . DT A 1 6 ? 4.929 14.651 14.624 1.00 4.83 ? 6 DT A C7 1
ATOM 119 C C6 . DT A 1 6 ? 5.730 12.293 14.605 1.00 4.66 ? 6 DT A C6 1
ATOM 120 P P . DT A 1 7 ? 4.981 6.786 16.124 0.50 5.62 ? 7 DT A P 1
ATOM 121 O OP1 . DT A 1 7 ? 5.178 5.329 16.292 0.50 5.50 ? 7 DT A OP1 1
ATOM 122 O OP2 . DT A 1 7 ? 3.727 7.411 16.612 0.50 5.28 ? 7 DT A OP2 1
ATOM 123 O "O5'" . DT A 1 7 ? 6.215 7.533 16.793 0.50 5.42 ? 7 DT A "O5'" 1
ATOM 124 C "C5'" . DT A 1 7 ? 7.549 7.098 16.545 0.50 5.05 ? 7 DT A "C5'" 1
ATOM 125 C "C4'" . DT A 1 7 ? 8.392 7.298 17.781 0.50 4.91 ? 7 DT A "C4'" 1
ATOM 126 O "O4'" . DT A 1 7 ? 8.568 8.720 17.987 0.50 4.46 ? 7 DT A "O4'" 1
ATOM 127 C "C3'" . DT A 1 7 ? 7.735 6.758 19.049 0.50 4.83 ? 7 DT A "C3'" 1
ATOM 128 O "O3'" . DT A 1 7 ? 8.680 6.121 19.912 0.50 5.40 ? 7 DT A "O3'" 1
ATOM 129 C "C2'" . DT A 1 7 ? 7.111 7.983 19.691 0.50 4.53 ? 7 DT A "C2'" 1
ATOM 130 C "C1'" . DT A 1 7 ? 7.953 9.148 19.193 0.50 4.21 ? 7 DT A "C1'" 1
ATOM 131 N N1 . DT A 1 7 ? 7.143 10.340 18.877 1.00 3.82 ? 7 DT A N1 1
ATOM 132 C C2 . DT A 1 7 ? 7.609 11.581 19.243 1.00 3.41 ? 7 DT A C2 1
ATOM 133 O O2 . DT A 1 7 ? 8.679 11.749 19.816 1.00 3.67 ? 7 DT A O2 1
ATOM 134 N N3 . DT A 1 7 ? 6.773 12.630 18.912 1.00 3.05 ? 7 DT A N3 1
ATOM 135 C C4 . DT A 1 7 ? 5.553 12.552 18.264 1.00 3.02 ? 7 DT A C4 1
ATOM 136 O O4 . DT A 1 7 ? 4.900 13.577 18.031 1.00 3.90 ? 7 DT A O4 1
ATOM 137 C C5 . DT A 1 7 ? 5.133 11.229 17.914 1.00 3.00 ? 7 DT A C5 1
ATOM 138 C C7 . DT A 1 7 ? 3.822 11.065 17.224 1.00 2.71 ? 7 DT A C7 1
ATOM 139 C C6 . DT A 1 7 ? 5.932 10.199 18.227 1.00 3.62 ? 7 DT A C6 1
ATOM 140 P P . DC A 1 8 ? 8.147 5.254 21.154 0.50 6.13 ? 8 DC A P 1
ATOM 141 O OP1 . DC A 1 8 ? 8.970 4.025 21.265 0.50 6.18 ? 8 DC A OP1 1
ATOM 142 O OP2 . DC A 1 8 ? 6.672 5.144 21.038 0.50 6.10 ? 8 DC A OP2 1
ATOM 143 O "O5'" . DC A 1 8 ? 8.442 6.187 22.408 1.00 6.09 ? 8 DC A "O5'" 1
ATOM 144 C "C5'" . DC A 1 8 ? 9.775 6.558 22.761 0.50 5.58 ? 8 DC A "C5'" 1
ATOM 145 C "C4'" . DC A 1 8 ? 9.743 7.474 23.959 0.50 5.74 ? 8 DC A "C4'" 1
ATOM 146 O "O4'" . DC A 1 8 ? 9.284 8.780 23.542 1.00 5.63 ? 8 DC A "O4'" 1
ATOM 147 C "C3'" . DC A 1 8 ? 8.774 7.009 25.048 1.00 5.61 ? 8 DC A "C3'" 1
ATOM 148 O "O3'" . DC A 1 8 ? 9.288 7.380 26.325 1.00 6.05 ? 8 DC A "O3'" 1
ATOM 149 C "C2'" . DC A 1 8 ? 7.549 7.860 24.789 1.00 5.53 ? 8 DC A "C2'" 1
ATOM 150 C "C1'" . DC A 1 8 ? 8.194 9.164 24.349 1.00 5.34 ? 8 DC A "C1'" 1
ATOM 151 N N1 . DC A 1 8 ? 7.338 10.083 23.574 1.00 4.69 ? 8 DC A N1 1
ATOM 152 C C2 . DC A 1 8 ? 7.769 11.409 23.379 1.00 4.20 ? 8 DC A C2 1
ATOM 153 O O2 . DC A 1 8 ? 8.855 11.776 23.866 1.00 3.82 ? 8 DC A O2 1
ATOM 154 N N3 . DC A 1 8 ? 6.973 12.266 22.680 1.00 3.76 ? 8 DC A N3 1
ATOM 155 C C4 . DC A 1 8 ? 5.785 11.850 22.209 1.00 3.85 ? 8 DC A C4 1
ATOM 156 N N4 . DC A 1 8 ? 5.007 12.735 21.570 1.00 3.60 ? 8 DC A N4 1
ATOM 157 C C5 . DC A 1 8 ? 5.336 10.509 22.387 1.00 4.33 ? 8 DC A C5 1
ATOM 158 C C6 . DC A 1 8 ? 6.138 9.667 23.066 1.00 4.54 ? 8 DC A C6 1
ATOM 159 P P . DG A 1 9 ? 10.360 6.441 27.049 1.00 5.95 ? 9 DG A P 1
ATOM 160 O OP1 . DG A 1 9 ? 11.279 5.985 25.978 1.00 6.44 ? 9 DG A OP1 1
ATOM 161 O OP2 . DG A 1 9 ? 9.615 5.434 27.859 1.00 6.59 ? 9 DG A OP2 1
ATOM 162 O "O5'" . DG A 1 9 ? 11.181 7.430 28.011 1.00 6.13 ? 9 DG A "O5'" 1
ATOM 163 C "C5'" . DG A 1 9 ? 12.440 8.001 27.610 1.00 5.14 ? 9 DG A "C5'" 1
ATOM 164 C "C4'" . DG A 1 9 ? 12.749 9.251 28.411 1.00 4.56 ? 9 DG A "C4'" 1
ATOM 165 O "O4'" . DG A 1 9 ? 11.942 10.351 27.943 1.00 3.40 ? 9 DG A "O4'" 1
ATOM 166 C "C3'" . DG A 1 9 ? 12.483 9.160 29.915 1.00 4.32 ? 9 DG A "C3'" 1
ATOM 167 O "O3'" . DG A 1 9 ? 13.429 9.993 30.620 1.00 4.56 ? 9 DG A "O3'" 1
ATOM 168 C "C2'" . DG A 1 9 ? 11.055 9.678 30.032 1.00 3.96 ? 9 DG A "C2'" 1
ATOM 169 C "C1'" . DG A 1 9 ? 10.996 10.738 28.935 1.00 3.40 ? 9 DG A "C1'" 1
ATOM 170 N N9 . DG A 1 9 ? 9.714 10.900 28.258 1.00 2.57 ? 9 DG A N9 1
ATOM 171 C C8 . DG A 1 9 ? 8.861 9.902 27.835 1.00 2.12 ? 9 DG A C8 1
ATOM 172 N N7 . DG A 1 9 ? 7.816 10.357 27.207 1.00 1.41 ? 9 DG A N7 1
ATOM 173 C C5 . DG A 1 9 ? 7.978 11.736 27.232 1.00 1.68 ? 9 DG A C5 1
ATOM 174 C C6 . DG A 1 9 ? 7.159 12.746 26.705 1.00 1.34 ? 9 DG A C6 1
ATOM 175 O O6 . DG A 1 9 ? 6.108 12.645 26.081 1.00 1.13 ? 9 DG A O6 1
ATOM 176 N N1 . DG A 1 9 ? 7.670 13.996 26.958 1.00 1.44 ? 9 DG A N1 1
ATOM 177 C C2 . DG A 1 9 ? 8.830 14.254 27.634 1.00 1.45 ? 9 DG A C2 1
ATOM 178 N N2 . DG A 1 9 ? 9.123 15.543 27.810 1.00 1.47 ? 9 DG A N2 1
ATOM 179 N N3 . DG A 1 9 ? 9.630 13.320 28.115 1.00 1.72 ? 9 DG A N3 1
ATOM 180 C C4 . DG A 1 9 ? 9.138 12.084 27.888 1.00 2.33 ? 9 DG A C4 1
ATOM 181 P P . DG A 1 10 ? 13.461 10.028 32.251 1.00 4.65 ? 10 DG A P 1
ATOM 182 O OP1 . DG A 1 10 ? 14.822 10.459 32.680 1.00 4.71 ? 10 DG A OP1 1
ATOM 183 O OP2 . DG A 1 10 ? 12.888 8.755 32.770 1.00 4.98 ? 10 DG A OP2 1
ATOM 184 O "O5'" . DG A 1 10 ? 12.422 11.177 32.632 1.00 4.28 ? 10 DG A "O5'" 1
ATOM 185 C "C5'" . DG A 1 10 ? 12.472 12.465 32.004 1.00 3.56 ? 10 DG A "C5'" 1
ATOM 186 C "C4'" . DG A 1 10 ? 11.307 13.322 32.443 1.00 3.69 ? 10 DG A "C4'" 1
ATOM 187 O "O4'" . DG A 1 10 ? 10.100 13.010 31.700 1.00 3.00 ? 10 DG A "O4'" 1
ATOM 188 C "C3'" . DG A 1 10 ? 10.928 13.191 33.915 1.00 3.59 ? 10 DG A "C3'" 1
ATOM 189 O "O3'" . DG A 1 10 ? 10.372 14.420 34.375 1.00 4.99 ? 10 DG A "O3'" 1
ATOM 190 C "C2'" . DG A 1 10 ? 9.757 12.230 33.853 1.00 3.27 ? 10 DG A "C2'" 1
ATOM 191 C "C1'" . DG A 1 10 ? 9.046 12.720 32.604 1.00 2.51 ? 10 DG A "C1'" 1
ATOM 192 N N9 . DG A 1 10 ? 8.218 11.717 31.958 1.00 2.44 ? 10 DG A N9 1
ATOM 193 C C8 . DG A 1 10 ? 8.389 10.356 32.014 1.00 2.59 ? 10 DG A C8 1
ATOM 194 N N7 . DG A 1 10 ? 7.581 9.706 31.226 1.00 3.03 ? 10 DG A N7 1
ATOM 195 C C5 . DG A 1 10 ? 6.812 10.699 30.632 1.00 2.94 ? 10 DG A C5 1
ATOM 196 C C6 . DG A 1 10 ? 5.790 10.596 29.677 1.00 2.90 ? 10 DG A C6 1
ATOM 197 O O6 . DG A 1 10 ? 5.375 9.576 29.110 1.00 3.69 ? 10 DG A O6 1
ATOM 198 N N1 . DG A 1 10 ? 5.239 11.840 29.373 1.00 2.49 ? 10 DG A N1 1
ATOM 199 C C2 . DG A 1 10 ? 5.633 13.034 29.913 1.00 2.29 ? 10 DG A C2 1
ATOM 200 N N2 . DG A 1 10 ? 4.941 14.120 29.500 1.00 2.42 ? 10 DG A N2 1
ATOM 201 N N3 . DG A 1 10 ? 6.624 13.148 30.801 1.00 2.31 ? 10 DG A N3 1
ATOM 202 C C4 . DG A 1 10 ? 7.161 11.943 31.110 1.00 2.70 ? 10 DG A C4 1
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