data_1ZF5
#
_entry.id 1ZF5
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1ZF5 pdb_00001zf5 10.2210/pdb1zf5/pdb
NDB BD0079 ? ?
RCSB RCSB032648 ? ?
WWPDB D_1000032648 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2005-05-10
2 'Structure model' 1 1 2008-04-30
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-10-11
5 'Structure model' 1 4 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Refinement description'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' software
2 5 'Structure model' chem_comp_atom
3 5 'Structure model' chem_comp_bond
4 5 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_database_2.pdbx_DOI'
2 5 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.entry_id 1ZF5
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2005-04-19
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1P4Y . unspecified
PDB 1P4Z . unspecified
PDB 1DCW . unspecified
PDB 1DCV . unspecified
NDB BD0035 'Isomorphous to structure' unspecified
NDB BD0036 'Isomorphous to structure' unspecified
PDB 1ZEW . unspecified
PDB 1ZEX . unspecified
PDB 1ZEY . unspecified
PDB 1ZEZ . unspecified
PDB 1ZF0 . unspecified
PDB 1ZF1 . unspecified
PDB 1ZF2 . unspecified
PDB 1ZF3 . unspecified
PDB 1ZF4 . unspecified
PDB 1ZF6 . unspecified
PDB 1ZF7 . unspecified
PDB 1ZF8 . unspecified
PDB 1ZF9 . unspecified
PDB 1ZFA . unspecified
PDB 1ZFB . unspecified
PDB 1ZFC . unspecified
PDB 1ZFE . unspecified
PDB 1ZFF . unspecified
PDB 1ZFG . unspecified
PDB 1ZFH . unspecified
PDB 1ZFM . unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Hays, F.A.' 1
'Teegarden, A.T.' 2
'Jones, Z.J.R.' 3
'Harms, M.' 4
'Raup, D.' 5
'Watson, J.' 6
'Cavaliere, E.' 7
'Ho, P.S.' 8
#
_citation.id primary
_citation.title 'How sequence defines structure: a crystallographic map of DNA structure and conformation.'
_citation.journal_abbrev Proc.Natl.Acad.Sci.Usa
_citation.journal_volume 102
_citation.page_first 7157
_citation.page_last 7162
_citation.year 2005
_citation.journal_id_ASTM PNASA6
_citation.country US
_citation.journal_id_ISSN 0027-8424
_citation.journal_id_CSD 0040
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 15870206
_citation.pdbx_database_id_DOI 10.1073/pnas.0409455102
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Hays, F.A.' 1 ?
primary 'Teegarden, A.' 2 ?
primary 'Jones, Z.J.' 3 ?
primary 'Harms, M.' 4 ?
primary 'Raup, D.' 5 ?
primary 'Watson, J.' 6 ?
primary 'Cavaliere, E.' 7 ?
primary 'Ho, P.S.' 8 ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description "5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'"
_entity.formula_weight 3045.992
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DA)(DG)(DC)(DG)(DC)(DT)(DG)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CCAGCGCTGG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DC n
1 3 DA n
1 4 DG n
1 5 DC n
1 6 DG n
1 7 DC n
1 8 DT n
1 9 DG n
1 10 DG n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details
;DNA WAS SYNTHESIZED ON AN APPLIED BIOSYSTEMS DNA SYNTHESIZER USING PHOSPHORAMIDITE CHEMISTRY, WITH THE TRITYL-PROTECTING GROUP LEFT INTACT AT THE 5'-TERMINAL NUCLEOTIDE THEN DEPROTECTED BY TREATMENT WITH 3% ACETIC ACID FOR FIFTEEN MINUTES, NEUTRALIZED WITH AMMONIUM HYDROXIDE, AND DESALTED ON A SIGMA G-25 SEPHADEX COLUMN.
;
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DC 2 2 2 DC C A . n
A 1 3 DA 3 3 3 DA A A . n
A 1 4 DG 4 4 4 DG G A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
A 1 7 DC 7 7 7 DC C A . n
A 1 8 DT 8 8 8 DT T A . n
A 1 9 DG 9 9 9 DG G A . n
A 1 10 DG 10 10 10 DG G A . n
#
loop_
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
_software.pdbx_ordinal
DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction'
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1
SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling'
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2
REFMAC 5.2.0003 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ?
3
EPMR . ? ? ? ? phasing ? ? ? 4
#
_cell.entry_id 1ZF5
_cell.length_a 31.687
_cell.length_b 25.721
_cell.length_c 34.089
_cell.angle_alpha 90.00
_cell.angle_beta 116.71
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1ZF5
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 5
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1ZF5
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.04
_exptl_crystal.density_percent_sol 39.62
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_details
'Na Cacodylate, CaCl2, Spermine, MPD in resevoir, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 7.00'
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.details
1 1 1 'Na Cacodylate' ? ? ?
1 2 1 CaCl2 ? ? ?
1 3 1 Spermine ? ? ?
1 4 1 MPD ? ? ?
1 5 1 H2O ? ? ?
1 6 2 'Na Cacodylate' ? ? ?
1 7 2 CaCl2 ? ? ?
1 8 2 MPD ? ? ?
1 9 2 H2O ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 103.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 4'
_diffrn_detector.pdbx_collection_date 2004-02-26
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9795
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 14-BM-D'
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 14-BM-D
_diffrn_source.pdbx_wavelength 0.9795
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1ZF5
_reflns.observed_criterion_sigma_I 0.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 11.070
_reflns.d_resolution_high 0.990
_reflns.number_obs 12303
_reflns.number_all ?
_reflns.percent_possible_obs 89.2
_reflns.pdbx_Rmerge_I_obs 0.033
_reflns.pdbx_Rsym_value 0.033
_reflns.pdbx_netI_over_sigmaI 27.4000
_reflns.B_iso_Wilson_estimate 0.7
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 0.99
_reflns_shell.d_res_low 1.03
_reflns_shell.percent_possible_all 43.4
_reflns_shell.Rmerge_I_obs 0.161
_reflns_shell.pdbx_Rsym_value 0.161
_reflns_shell.meanI_over_sigI_obs 4.200
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 1ZF5
_refine.ls_number_reflns_obs 12191
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 11.07
_refine.ls_d_res_high 0.99
_refine.ls_percent_reflns_obs 88.3
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.29
_refine.ls_R_factor_R_free 0.298
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 10.300
_refine.ls_number_reflns_R_free 1260
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.825
_refine.correlation_coeff_Fo_to_Fc_free 0.849
_refine.B_iso_mean 3.0
_refine.aniso_B[1][1] -0.35
_refine.aniso_B[2][2] 0.31
_refine.aniso_B[3][3] 0.04
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] -0.05
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'FLAT MODEL'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details
'STRUCTURE IS NOT REFINED TO ITS LOWEST R VALUES, REFER TO CITATION. ALTERNATE CONFORMATIONS CLEARLY VISIBLE ALONG DNA BACKBONE.`'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.045
_refine.pdbx_overall_ESU_R_Free 0.041
_refine.overall_SU_ML 0.030
_refine.overall_SU_B 0.529
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 1ZF5
_refine_analyze.Luzzati_coordinate_error_obs 0.16
_refine_analyze.Luzzati_d_res_low_obs 5.00
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.Luzzati_sigma_a_obs -0.08
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 202
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 202
_refine_hist.d_res_high 0.99
_refine_hist.d_res_low 11.07
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.004 0.021 ? 226 'X-RAY DIFFRACTION' ?
r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.000 3.000 ? 347 'X-RAY DIFFRACTION' ?
r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.065 0.200 ? 39 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.010 0.020 ? 104 'X-RAY DIFFRACTION' ?
r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.247 0.200 ? 94 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined 0.302 0.200 ? 124 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.231 0.200 ? 82 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.143 0.200 ? 25 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.174 0.200 ? 45 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_it 0.505 3.000 ? 330 'X-RAY DIFFRACTION' ?
r_scangle_it 0.842 4.500 ? 347 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 6
_refine_ls_shell.d_res_high 0.99
_refine_ls_shell.d_res_low 1.05
_refine_ls_shell.number_reflns_R_work 1008
_refine_ls_shell.R_factor_R_work 0.287
_refine_ls_shell.percent_reflns_obs 48.9
_refine_ls_shell.R_factor_R_free 0.306
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 104
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_struct.entry_id 1ZF5
_struct.title 'GCT duplex B-DNA'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.text 'Crystallographic Screen, DNA Structure, Holliday Junction, Molecular Structure, DNA'
_struct_keywords.entry_id 1ZF5
_struct_keywords.pdbx_keywords DNA
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1ZF5
_struct_ref.pdbx_db_accession 1ZF5
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1ZF5
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 10
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1ZF5
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 10
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 10
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 16.3648496398 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 30.4514635008
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 10 N1 ? ? A DC 1 A DG 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 10 O6 ? ? A DC 1 A DG 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 10 N2 ? ? A DC 1 A DG 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 8 N3 ? ? A DA 3 A DT 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 3 A DT 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 4 A DC 7 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 4 A DC 7 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 4 A DC 7 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 5 A DG 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 5 A DG 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 5 A DG 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 6 A DC 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 6 A DC 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 6 A DC 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 7 A DG 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 7 A DG 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 7 A DG 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 8 A DA 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 8 A DA 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog26 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 10 A DC 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 10 A DC 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 10 A DC 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DA A 3 ? ? 0.054 'SIDE CHAIN'
2 1 DG A 6 ? ? 0.051 'SIDE CHAIN'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
1ZF5 'double helix'
1ZF5 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 10 2_656 0.057 -0.096 0.027 -7.886 -15.253 -1.899 1 A_DC1:DG10_A A 1 ? A 10 ? 19 1
1 A DC 2 1_555 A DG 9 2_656 0.399 -0.162 0.208 -0.421 -13.091 0.290 2 A_DC2:DG9_A A 2 ? A 9 ? 19 1
1 A DA 3 1_555 A DT 8 2_656 -0.010 -0.142 0.171 -0.764 -7.702 0.552 3 A_DA3:DT8_A A 3 ? A 8 ? 20 1
1 A DG 4 1_555 A DC 7 2_656 0.002 -0.034 0.393 14.046 -4.847 -0.410 4 A_DG4:DC7_A A 4 ? A 7 ? 19 1
1 A DC 5 1_555 A DG 6 2_656 0.249 -0.077 -0.116 18.068 -15.701 -0.221 5 A_DC5:DG6_A A 5 ? A 6 ? 19 1
1 A DG 6 1_555 A DC 5 2_656 -0.249 -0.077 -0.116 -18.068 -15.701 -0.221 6 A_DG6:DC5_A A 6 ? A 5 ? 19 1
1 A DC 7 1_555 A DG 4 2_656 -0.002 -0.034 0.393 -14.046 -4.847 -0.409 7 A_DC7:DG4_A A 7 ? A 4 ? 19 1
1 A DT 8 1_555 A DA 3 2_656 0.010 -0.142 0.171 0.764 -7.702 0.552 8 A_DT8:DA3_A A 8 ? A 3 ? 20 1
1 A DG 9 1_555 A DC 2 2_656 -0.399 -0.162 0.208 0.421 -13.091 0.290 9 A_DG9:DC2_A A 9 ? A 2 ? 19 1
1 A DG 10 1_555 A DC 1 2_656 -0.057 -0.096 0.027 7.886 -15.253 -1.899 10 A_DG10:DC1_A A 10 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 10 2_656 A DC 2 1_555 A DG 9 2_656 -0.452 0.730 3.272 2.640 8.498 29.826 -0.309 1.361 3.299 16.065
-4.991 31.096 1 AA_DC1DC2:DG9DG10_AA A 1 ? A 10 ? A 2 ? A 9 ?
1 A DC 2 1_555 A DG 9 2_656 A DA 3 1_555 A DT 8 2_656 0.134 2.817 3.288 -0.353 -9.155 49.702 3.909 -0.181 2.761 -10.786 0.416
50.487 2 AA_DC2DA3:DT8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ?
1 A DA 3 1_555 A DT 8 2_656 A DG 4 1_555 A DC 7 2_656 0.720 0.720 3.016 -3.383 9.957 22.070 -1.266 -2.710 2.921 24.313 8.261
24.419 3 AA_DA3DG4:DC7DT8_AA A 3 ? A 8 ? A 4 ? A 7 ?
1 A DG 4 1_555 A DC 7 2_656 A DC 5 1_555 A DG 6 2_656 -0.511 0.550 3.210 3.219 -2.835 37.525 1.204 1.193 3.109 -4.389
-4.984 37.760 4 AA_DG4DC5:DG6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ?
1 A DC 5 1_555 A DG 6 2_656 A DG 6 1_555 A DC 5 2_656 0.000 -0.310 3.984 0.000 7.884 44.081 -1.278 0.000 3.876 10.405 0.000
44.746 5 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ?
1 A DG 6 1_555 A DC 5 2_656 A DC 7 1_555 A DG 4 2_656 0.511 0.550 3.210 -3.219 -2.835 37.525 1.204 -1.193 3.109 -4.389 4.984
37.760 6 AA_DG6DC7:DG4DC5_AA A 6 ? A 5 ? A 7 ? A 4 ?
1 A DC 7 1_555 A DG 4 2_656 A DT 8 1_555 A DA 3 2_656 -0.720 0.720 3.016 3.383 9.957 22.070 -1.266 2.710 2.921 24.313
-8.261 24.419 7 AA_DC7DT8:DA3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ?
1 A DT 8 1_555 A DA 3 2_656 A DG 9 1_555 A DC 2 2_656 -0.134 2.817 3.288 0.353 -9.155 49.702 3.909 0.181 2.761 -10.786
-0.416 50.487 8 AA_DT8DG9:DC2DA3_AA A 8 ? A 3 ? A 9 ? A 2 ?
1 A DG 9 1_555 A DC 2 2_656 A DG 10 1_555 A DC 1 2_656 0.452 0.730 3.272 -2.640 8.498 29.826 -0.309 -1.361 3.299 16.065 4.991
31.096 9 AA_DG9DG10:DC1DC2_AA A 9 ? A 2 ? A 10 ? A 1 ?
#
_atom_sites.entry_id 1ZF5
_atom_sites.fract_transf_matrix[1][1] 0.031559
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.015879
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.038879
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.032839
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 23.201 14.168 3.362 1.00 7.27 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 22.037 14.325 4.185 1.00 6.52 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 20.904 14.978 3.427 1.00 5.71 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 20.179 13.986 2.662 1.00 5.49 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 19.862 15.691 4.285 1.00 5.03 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 19.491 16.891 3.618 1.00 4.64 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 18.687 14.729 4.307 1.00 4.74 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 18.791 14.056 2.951 1.00 4.46 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 18.270 12.683 2.920 1.00 4.02 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 17.040 12.432 2.303 1.00 3.72 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 16.400 13.382 1.824 1.00 3.78 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 16.580 11.160 2.247 1.00 3.34 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 17.291 10.169 2.788 1.00 3.55 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 16.799 8.931 2.708 1.00 3.27 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 18.539 10.402 3.437 1.00 3.63 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 18.985 11.660 3.478 1.00 4.03 ? 1 DC A C6 1
ATOM 17 P P . DC A 1 2 ? 19.197 18.218 4.461 1.00 3.83 ? 2 DC A P 1
ATOM 18 O OP1 . DC A 1 2 ? 19.268 19.326 3.477 1.00 4.54 ? 2 DC A OP1 1
ATOM 19 O OP2 . DC A 1 2 ? 20.065 18.240 5.664 1.00 4.58 ? 2 DC A OP2 1
ATOM 20 O "O5'" . DC A 1 2 ? 17.690 18.032 4.930 1.00 3.70 ? 2 DC A "O5'" 1
ATOM 21 C "C5'" . DC A 1 2 ? 16.629 18.402 4.060 1.00 3.01 ? 2 DC A "C5'" 1
ATOM 22 C "C4'" . DC A 1 2 ? 15.302 17.976 4.637 1.00 2.39 ? 2 DC A "C4'" 1
ATOM 23 O "O4'" . DC A 1 2 ? 15.170 16.539 4.570 1.00 1.70 ? 2 DC A "O4'" 1
ATOM 24 C "C3'" . DC A 1 2 ? 15.067 18.355 6.102 1.00 1.97 ? 2 DC A "C3'" 1
ATOM 25 O "O3'" . DC A 1 2 ? 13.706 18.755 6.252 1.00 2.13 ? 2 DC A "O3'" 1
ATOM 26 C "C2'" . DC A 1 2 ? 15.260 17.037 6.832 1.00 1.92 ? 2 DC A "C2'" 1
ATOM 27 C "C1'" . DC A 1 2 ? 14.672 16.086 5.812 1.00 1.72 ? 2 DC A "C1'" 1
ATOM 28 N N1 . DC A 1 2 ? 15.002 14.661 5.935 1.00 1.41 ? 2 DC A N1 1
ATOM 29 C C2 . DC A 1 2 ? 14.148 13.743 5.332 1.00 1.52 ? 2 DC A C2 1
ATOM 30 O O2 . DC A 1 2 ? 13.131 14.166 4.761 1.00 1.59 ? 2 DC A O2 1
ATOM 31 N N3 . DC A 1 2 ? 14.442 12.424 5.384 1.00 1.52 ? 2 DC A N3 1
ATOM 32 C C4 . DC A 1 2 ? 15.540 12.012 6.019 1.00 1.85 ? 2 DC A C4 1
ATOM 33 N N4 . DC A 1 2 ? 15.799 10.702 6.022 1.00 1.83 ? 2 DC A N4 1
ATOM 34 C C5 . DC A 1 2 ? 16.423 12.927 6.671 1.00 1.77 ? 2 DC A C5 1
ATOM 35 C C6 . DC A 1 2 ? 16.117 14.233 6.604 1.00 1.66 ? 2 DC A C6 1
ATOM 36 P P . DA A 1 3 ? 13.321 20.308 6.212 1.00 1.96 ? 3 DA A P 1
ATOM 37 O OP1 . DA A 1 3 ? 14.072 20.898 5.073 1.00 2.25 ? 3 DA A OP1 1
ATOM 38 O OP2 . DA A 1 3 ? 13.482 20.873 7.572 1.00 2.69 ? 3 DA A OP2 1
ATOM 39 O "O5'" . DA A 1 3 ? 11.771 20.281 5.858 1.00 2.40 ? 3 DA A "O5'" 1
ATOM 40 C "C5'" . DA A 1 3 ? 11.331 19.975 4.540 1.00 1.67 ? 3 DA A "C5'" 1
ATOM 41 C "C4'" . DA A 1 3 ? 10.043 19.187 4.591 1.00 1.79 ? 3 DA A "C4'" 1
ATOM 42 O "O4'" . DA A 1 3 ? 10.292 17.862 5.110 1.00 1.29 ? 3 DA A "O4'" 1
ATOM 43 C "C3'" . DA A 1 3 ? 8.952 19.782 5.476 1.00 1.66 ? 3 DA A "C3'" 1
ATOM 44 O "O3'" . DA A 1 3 ? 7.690 19.498 4.870 1.00 1.64 ? 3 DA A "O3'" 1
ATOM 45 C "C2'" . DA A 1 3 ? 9.121 19.032 6.789 1.00 1.40 ? 3 DA A "C2'" 1
ATOM 46 C "C1'" . DA A 1 3 ? 9.604 17.658 6.339 1.00 1.49 ? 3 DA A "C1'" 1
ATOM 47 N N9 . DA A 1 3 ? 10.550 16.993 7.232 1.00 1.46 ? 3 DA A N9 1
ATOM 48 C C8 . DA A 1 3 ? 11.439 17.558 8.113 1.00 1.43 ? 3 DA A C8 1
ATOM 49 N N7 . DA A 1 3 ? 12.247 16.692 8.671 1.00 1.75 ? 3 DA A N7 1
ATOM 50 C C5 . DA A 1 3 ? 11.845 15.473 8.144 1.00 1.66 ? 3 DA A C5 1
ATOM 51 C C6 . DA A 1 3 ? 12.324 14.163 8.323 1.00 1.64 ? 3 DA A C6 1
ATOM 52 N N6 . DA A 1 3 ? 13.373 13.862 9.090 1.00 2.03 ? 3 DA A N6 1
ATOM 53 N N1 . DA A 1 3 ? 11.688 13.168 7.667 1.00 1.66 ? 3 DA A N1 1
ATOM 54 C C2 . DA A 1 3 ? 10.655 13.482 6.875 1.00 1.79 ? 3 DA A C2 1
ATOM 55 N N3 . DA A 1 3 ? 10.127 14.677 6.611 1.00 1.55 ? 3 DA A N3 1
ATOM 56 C C4 . DA A 1 3 ? 10.777 15.641 7.285 1.00 1.51 ? 3 DA A C4 1
ATOM 57 P P . DG A 1 4 ? 6.363 20.227 5.394 1.00 1.19 ? 4 DG A P 1
ATOM 58 O OP1 . DG A 1 4 ? 5.407 20.203 4.257 1.00 1.61 ? 4 DG A OP1 1
ATOM 59 O OP2 . DG A 1 4 ? 6.702 21.518 6.042 1.00 2.11 ? 4 DG A OP2 1
ATOM 60 O "O5'" . DG A 1 4 ? 5.829 19.255 6.530 1.00 1.68 ? 4 DG A "O5'" 1
ATOM 61 C "C5'" . DG A 1 4 ? 5.363 17.956 6.202 1.00 2.43 ? 4 DG A "C5'" 1
ATOM 62 C "C4'" . DG A 1 4 ? 5.184 17.139 7.457 1.00 2.62 ? 4 DG A "C4'" 1
ATOM 63 O "O4'" . DG A 1 4 ? 6.465 16.711 7.979 1.00 2.51 ? 4 DG A "O4'" 1
ATOM 64 C "C3'" . DG A 1 4 ? 4.483 17.876 8.604 1.00 2.95 ? 4 DG A "C3'" 1
ATOM 65 O "O3'" . DG A 1 4 ? 3.575 16.981 9.238 1.00 3.56 ? 4 DG A "O3'" 1
ATOM 66 C "C2'" . DG A 1 4 ? 5.616 18.149 9.577 1.00 2.59 ? 4 DG A "C2'" 1
ATOM 67 C "C1'" . DG A 1 4 ? 6.410 16.880 9.378 1.00 2.24 ? 4 DG A "C1'" 1
ATOM 68 N N9 . DG A 1 4 ? 7.759 16.808 9.929 1.00 2.19 ? 4 DG A N9 1
ATOM 69 C C8 . DG A 1 4 ? 8.540 17.825 10.423 1.00 2.36 ? 4 DG A C8 1
ATOM 70 N N7 . DG A 1 4 ? 9.676 17.404 10.914 1.00 2.33 ? 4 DG A N7 1
ATOM 71 C C5 . DG A 1 4 ? 9.645 16.029 10.718 1.00 2.20 ? 4 DG A C5 1
ATOM 72 C C6 . DG A 1 4 ? 10.593 15.021 11.057 1.00 2.29 ? 4 DG A C6 1
ATOM 73 O O6 . DG A 1 4 ? 11.691 15.147 11.617 1.00 2.36 ? 4 DG A O6 1
ATOM 74 N N1 . DG A 1 4 ? 10.153 13.758 10.672 1.00 2.25 ? 4 DG A N1 1
ATOM 75 C C2 . DG A 1 4 ? 8.962 13.496 10.040 1.00 2.20 ? 4 DG A C2 1
ATOM 76 N N2 . DG A 1 4 ? 8.719 12.216 9.743 1.00 2.24 ? 4 DG A N2 1
ATOM 77 N N3 . DG A 1 4 ? 8.076 14.422 9.723 1.00 2.02 ? 4 DG A N3 1
ATOM 78 C C4 . DG A 1 4 ? 8.478 15.653 10.092 1.00 2.11 ? 4 DG A C4 1
ATOM 79 P P . DC A 1 5 ? 1.998 17.157 9.021 1.00 3.81 ? 5 DC A P 1
ATOM 80 O OP1 . DC A 1 5 ? 1.778 17.389 7.572 1.00 4.44 ? 5 DC A OP1 1
ATOM 81 O OP2 . DC A 1 5 ? 1.495 18.152 10.003 1.00 4.80 ? 5 DC A OP2 1
ATOM 82 O "O5'" . DC A 1 5 ? 1.426 15.725 9.419 1.00 4.52 ? 5 DC A "O5'" 1
ATOM 83 C "C5'" . DC A 1 5 ? 1.602 14.610 8.552 1.00 5.04 ? 5 DC A "C5'" 1
ATOM 84 C "C4'" . DC A 1 5 ? 2.075 13.398 9.324 1.00 5.35 ? 5 DC A "C4'" 1
ATOM 85 O "O4'" . DC A 1 5 ? 3.444 13.584 9.772 1.00 4.72 ? 5 DC A "O4'" 1
ATOM 86 C "C3'" . DC A 1 5 ? 1.260 13.018 10.568 1.00 5.55 ? 5 DC A "C3'" 1
ATOM 87 O "O3'" . DC A 1 5 ? 1.070 11.596 10.595 1.00 6.72 ? 5 DC A "O3'" 1
ATOM 88 C "C2'" . DC A 1 5 ? 2.154 13.450 11.715 1.00 4.96 ? 5 DC A "C2'" 1
ATOM 89 C "C1'" . DC A 1 5 ? 3.536 13.211 11.138 1.00 4.20 ? 5 DC A "C1'" 1
ATOM 90 N N1 . DC A 1 5 ? 4.625 13.984 11.762 1.00 3.59 ? 5 DC A N1 1
ATOM 91 C C2 . DC A 1 5 ? 5.832 13.331 12.048 1.00 3.43 ? 5 DC A C2 1
ATOM 92 O O2 . DC A 1 5 ? 5.949 12.136 11.748 1.00 3.58 ? 5 DC A O2 1
ATOM 93 N N3 . DC A 1 5 ? 6.836 14.020 12.639 1.00 3.27 ? 5 DC A N3 1
ATOM 94 C C4 . DC A 1 5 ? 6.675 15.311 12.934 1.00 3.25 ? 5 DC A C4 1
ATOM 95 N N4 . DC A 1 5 ? 7.699 15.950 13.510 1.00 3.24 ? 5 DC A N4 1
ATOM 96 C C5 . DC A 1 5 ? 5.460 16.003 12.651 1.00 3.34 ? 5 DC A C5 1
ATOM 97 C C6 . DC A 1 5 ? 4.470 15.308 12.068 1.00 3.42 ? 5 DC A C6 1
ATOM 98 P P . DG A 1 6 ? 0.355 10.881 11.858 1.00 6.97 ? 6 DG A P 1
ATOM 99 O OP1 . DG A 1 6 ? -0.668 9.967 11.301 1.00 7.08 ? 6 DG A OP1 1
ATOM 100 O OP2 . DG A 1 6 ? -0.033 11.874 12.891 1.00 7.16 ? 6 DG A OP2 1
ATOM 101 O "O5'" . DG A 1 6 ? 1.524 9.965 12.446 1.00 6.82 ? 6 DG A "O5'" 1
ATOM 102 C "C5'" . DG A 1 6 ? 2.301 9.148 11.566 1.00 6.39 ? 6 DG A "C5'" 1
ATOM 103 C "C4'" . DG A 1 6 ? 3.317 8.323 12.328 1.00 6.02 ? 6 DG A "C4'" 1
ATOM 104 O "O4'" . DG A 1 6 ? 4.368 9.161 12.859 1.00 5.67 ? 6 DG A "O4'" 1
ATOM 105 C "C3'" . DG A 1 6 ? 2.779 7.523 13.509 1.00 6.10 ? 6 DG A "C3'" 1
ATOM 106 O "O3'" . DG A 1 6 ? 3.434 6.245 13.573 1.00 6.86 ? 6 DG A "O3'" 1
ATOM 107 C "C2'" . DG A 1 6 ? 3.110 8.405 14.702 1.00 5.64 ? 6 DG A "C2'" 1
ATOM 108 C "C1'" . DG A 1 6 ? 4.396 9.104 14.278 1.00 4.92 ? 6 DG A "C1'" 1
ATOM 109 N N9 . DG A 1 6 ? 4.548 10.480 14.737 1.00 4.23 ? 6 DG A N9 1
ATOM 110 C C8 . DG A 1 6 ? 3.728 11.535 14.417 1.00 4.02 ? 6 DG A C8 1
ATOM 111 N N7 . DG A 1 6 ? 4.162 12.678 14.867 1.00 4.00 ? 6 DG A N7 1
ATOM 112 C C5 . DG A 1 6 ? 5.331 12.359 15.544 1.00 3.64 ? 6 DG A C5 1
ATOM 113 C C6 . DG A 1 6 ? 6.254 13.195 16.216 1.00 3.53 ? 6 DG A C6 1
ATOM 114 O O6 . DG A 1 6 ? 6.241 14.424 16.321 1.00 3.22 ? 6 DG A O6 1
ATOM 115 N N1 . DG A 1 6 ? 7.287 12.461 16.788 1.00 3.19 ? 6 DG A N1 1
ATOM 116 C C2 . DG A 1 6 ? 7.423 11.097 16.710 1.00 3.10 ? 6 DG A C2 1
ATOM 117 N N2 . DG A 1 6 ? 8.484 10.573 17.345 1.00 2.92 ? 6 DG A N2 1
ATOM 118 N N3 . DG A 1 6 ? 6.583 10.306 16.061 1.00 3.32 ? 6 DG A N3 1
ATOM 119 C C4 . DG A 1 6 ? 5.566 11.000 15.506 1.00 3.69 ? 6 DG A C4 1
ATOM 120 P P . DC A 1 7 ? 2.850 5.102 14.537 1.00 7.62 ? 7 DC A P 1
ATOM 121 O OP1 . DC A 1 7 ? 3.297 3.774 14.040 1.00 7.53 ? 7 DC A OP1 1
ATOM 122 O OP2 . DC A 1 7 ? 1.408 5.370 14.730 1.00 7.54 ? 7 DC A OP2 1
ATOM 123 O "O5'" . DC A 1 7 ? 3.576 5.401 15.916 1.00 6.81 ? 7 DC A "O5'" 1
ATOM 124 C "C5'" . DC A 1 7 ? 4.988 5.442 15.973 1.00 6.10 ? 7 DC A "C5'" 1
ATOM 125 C "C4'" . DC A 1 7 ? 5.444 5.886 17.340 1.00 5.06 ? 7 DC A "C4'" 1
ATOM 126 O "O4'" . DC A 1 7 ? 5.431 7.329 17.431 1.00 4.84 ? 7 DC A "O4'" 1
ATOM 127 C "C3'" . DC A 1 7 ? 4.609 5.360 18.510 1.00 4.75 ? 7 DC A "C3'" 1
ATOM 128 O "O3'" . DC A 1 7 ? 5.443 4.578 19.366 1.00 4.40 ? 7 DC A "O3'" 1
ATOM 129 C "C2'" . DC A 1 7 ? 4.079 6.618 19.193 1.00 4.94 ? 7 DC A "C2'" 1
ATOM 130 C "C1'" . DC A 1 7 ? 5.029 7.715 18.731 1.00 4.27 ? 7 DC A "C1'" 1
ATOM 131 N N1 . DC A 1 7 ? 4.429 9.064 18.635 1.00 3.81 ? 7 DC A N1 1
ATOM 132 C C2 . DC A 1 7 ? 5.113 10.152 19.191 1.00 3.37 ? 7 DC A C2 1
ATOM 133 O O2 . DC A 1 7 ? 6.193 9.950 19.770 1.00 3.22 ? 7 DC A O2 1
ATOM 134 N N3 . DC A 1 7 ? 4.584 11.394 19.083 1.00 3.06 ? 7 DC A N3 1
ATOM 135 C C4 . DC A 1 7 ? 3.420 11.572 18.457 1.00 3.08 ? 7 DC A C4 1
ATOM 136 N N4 . DC A 1 7 ? 2.948 12.819 18.363 1.00 3.11 ? 7 DC A N4 1
ATOM 137 C C5 . DC A 1 7 ? 2.692 10.481 17.896 1.00 3.32 ? 7 DC A C5 1
ATOM 138 C C6 . DC A 1 7 ? 3.230 9.255 18.005 1.00 3.65 ? 7 DC A C6 1
ATOM 139 P P . DT A 1 8 ? 4.792 3.553 20.421 1.00 3.44 ? 8 DT A P 1
ATOM 140 O OP1 . DT A 1 8 ? 5.554 2.282 20.323 1.00 4.00 ? 8 DT A OP1 1
ATOM 141 O OP2 . DT A 1 8 ? 3.312 3.527 20.301 1.00 4.46 ? 8 DT A OP2 1
ATOM 142 O "O5'" . DT A 1 8 ? 5.175 4.239 21.801 1.00 3.14 ? 8 DT A "O5'" 1
ATOM 143 C "C5'" . DT A 1 8 ? 6.525 4.625 22.045 1.00 2.48 ? 8 DT A "C5'" 1
ATOM 144 C "C4'" . DT A 1 8 ? 6.601 5.568 23.221 1.00 1.80 ? 8 DT A "C4'" 1
ATOM 145 O "O4'" . DT A 1 8 ? 6.110 6.878 22.855 1.00 1.64 ? 8 DT A "O4'" 1
ATOM 146 C "C3'" . DT A 1 8 ? 5.783 5.136 24.439 1.00 1.68 ? 8 DT A "C3'" 1
ATOM 147 O "O3'" . DT A 1 8 ? 6.510 5.468 25.620 1.00 1.62 ? 8 DT A "O3'" 1
ATOM 148 C "C2'" . DT A 1 8 ? 4.557 6.027 24.359 1.00 1.67 ? 8 DT A "C2'" 1
ATOM 149 C "C1'" . DT A 1 8 ? 5.187 7.302 23.841 1.00 1.49 ? 8 DT A "C1'" 1
ATOM 150 N N1 . DT A 1 8 ? 4.294 8.286 23.221 1.00 1.53 ? 8 DT A N1 1
ATOM 151 C C2 . DT A 1 8 ? 4.673 9.604 23.307 1.00 1.58 ? 8 DT A C2 1
ATOM 152 O O2 . DT A 1 8 ? 5.681 9.967 23.894 1.00 1.84 ? 8 DT A O2 1
ATOM 153 N N3 . DT A 1 8 ? 3.834 10.483 22.675 1.00 1.69 ? 8 DT A N3 1
ATOM 154 C C4 . DT A 1 8 ? 2.680 10.179 21.981 1.00 1.55 ? 8 DT A C4 1
ATOM 155 O O4 . DT A 1 8 ? 2.041 11.075 21.449 1.00 1.81 ? 8 DT A O4 1
ATOM 156 C C5 . DT A 1 8 ? 2.330 8.774 21.944 1.00 1.59 ? 8 DT A C5 1
ATOM 157 C C7 . DT A 1 8 ? 1.091 8.351 21.221 1.00 1.33 ? 8 DT A C7 1
ATOM 158 C C6 . DT A 1 8 ? 3.142 7.911 22.564 1.00 1.48 ? 8 DT A C6 1
ATOM 159 P P . DG A 1 9 ? 7.313 4.327 26.406 1.00 1.98 ? 9 DG A P 1
ATOM 160 O OP1 . DG A 1 9 ? 8.116 3.573 25.410 1.00 2.69 ? 9 DG A OP1 1
ATOM 161 O OP2 . DG A 1 9 ? 6.362 3.599 27.281 1.00 2.72 ? 9 DG A OP2 1
ATOM 162 O "O5'" . DG A 1 9 ? 8.287 5.166 27.345 1.00 2.40 ? 9 DG A "O5'" 1
ATOM 163 C "C5'" . DG A 1 9 ? 9.384 5.888 26.788 1.00 2.02 ? 9 DG A "C5'" 1
ATOM 164 C "C4'" . DG A 1 9 ? 9.623 7.161 27.565 1.00 1.47 ? 9 DG A "C4'" 1
ATOM 165 O "O4'" . DG A 1 9 ? 8.559 8.107 27.322 1.00 1.53 ? 9 DG A "O4'" 1
ATOM 166 C "C3'" . DG A 1 9 ? 9.694 6.990 29.077 1.00 1.40 ? 9 DG A "C3'" 1
ATOM 167 O "O3'" . DG A 1 9 ? 10.669 7.906 29.578 1.00 1.30 ? 9 DG A "O3'" 1
ATOM 168 C "C2'" . DG A 1 9 ? 8.278 7.313 29.533 1.00 1.08 ? 9 DG A "C2'" 1
ATOM 169 C "C1'" . DG A 1 9 ? 7.792 8.325 28.500 1.00 1.33 ? 9 DG A "C1'" 1
ATOM 170 N N9 . DG A 1 9 ? 6.391 8.217 28.104 1.00 1.17 ? 9 DG A N9 1
ATOM 171 C C8 . DG A 1 9 ? 5.587 7.100 28.114 1.00 1.36 ? 9 DG A C8 1
ATOM 172 N N7 . DG A 1 9 ? 4.411 7.312 27.585 1.00 1.21 ? 9 DG A N7 1
ATOM 173 C C5 . DG A 1 9 ? 4.433 8.653 27.229 1.00 1.08 ? 9 DG A C5 1
ATOM 174 C C6 . DG A 1 9 ? 3.445 9.459 26.598 1.00 1.09 ? 9 DG A C6 1
ATOM 175 O O6 . DG A 1 9 ? 2.325 9.128 26.187 1.00 1.00 ? 9 DG A O6 1
ATOM 176 N N1 . DG A 1 9 ? 3.879 10.774 26.450 1.00 1.09 ? 9 DG A N1 1
ATOM 177 C C2 . DG A 1 9 ? 5.105 11.251 26.845 1.00 1.14 ? 9 DG A C2 1
ATOM 178 N N2 . DG A 1 9 ? 5.341 12.552 26.633 1.00 1.31 ? 9 DG A N2 1
ATOM 179 N N3 . DG A 1 9 ? 6.036 10.507 27.412 1.00 1.00 ? 9 DG A N3 1
ATOM 180 C C4 . DG A 1 9 ? 5.636 9.230 27.574 1.00 1.00 ? 9 DG A C4 1
ATOM 181 P P . DG A 1 10 ? 11.137 7.824 31.107 1.00 1.00 ? 10 DG A P 1
ATOM 182 O OP1 . DG A 1 10 ? 12.509 8.393 31.154 1.00 1.67 ? 10 DG A OP1 1
ATOM 183 O OP2 . DG A 1 10 ? 10.883 6.467 31.657 1.00 1.63 ? 10 DG A OP2 1
ATOM 184 O "O5'" . DG A 1 10 ? 10.165 8.858 31.825 1.00 1.91 ? 10 DG A "O5'" 1
ATOM 185 C "C5'" . DG A 1 10 ? 10.219 10.234 31.476 1.00 2.43 ? 10 DG A "C5'" 1
ATOM 186 C "C4'" . DG A 1 10 ? 8.997 10.965 31.977 1.00 2.99 ? 10 DG A "C4'" 1
ATOM 187 O "O4'" . DG A 1 10 ? 7.816 10.599 31.221 1.00 2.64 ? 10 DG A "O4'" 1
ATOM 188 C "C3'" . DG A 1 10 ? 8.651 10.746 33.453 1.00 3.27 ? 10 DG A "C3'" 1
ATOM 189 O "O3'" . DG A 1 10 ? 8.621 11.986 34.150 1.00 4.34 ? 10 DG A "O3'" 1
ATOM 190 C "C2'" . DG A 1 10 ? 7.277 10.098 33.420 1.00 3.17 ? 10 DG A "C2'" 1
ATOM 191 C "C1'" . DG A 1 10 ? 6.714 10.612 32.109 1.00 2.17 ? 10 DG A "C1'" 1
ATOM 192 N N9 . DG A 1 10 ? 5.642 9.794 31.547 1.00 1.85 ? 10 DG A N9 1
ATOM 193 C C8 . DG A 1 10 ? 5.477 8.435 31.686 1.00 1.55 ? 10 DG A C8 1
ATOM 194 N N7 . DG A 1 10 ? 4.391 7.989 31.113 1.00 1.14 ? 10 DG A N7 1
ATOM 195 C C5 . DG A 1 10 ? 3.807 9.118 30.555 1.00 1.60 ? 10 DG A C5 1
ATOM 196 C C6 . DG A 1 10 ? 2.605 9.258 29.815 1.00 1.34 ? 10 DG A C6 1
ATOM 197 O O6 . DG A 1 10 ? 1.793 8.380 29.492 1.00 1.71 ? 10 DG A O6 1
ATOM 198 N N1 . DG A 1 10 ? 2.386 10.579 29.440 1.00 1.70 ? 10 DG A N1 1
ATOM 199 C C2 . DG A 1 10 ? 3.217 11.632 29.736 1.00 1.79 ? 10 DG A C2 1
ATOM 200 N N2 . DG A 1 10 ? 2.835 12.834 29.288 1.00 1.78 ? 10 DG A N2 1
ATOM 201 N N3 . DG A 1 10 ? 4.341 11.516 30.424 1.00 1.91 ? 10 DG A N3 1
ATOM 202 C C4 . DG A 1 10 ? 4.572 10.239 30.802 1.00 1.63 ? 10 DG A C4 1
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