data_1YJO
#
_entry.id 1YJO
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1YJO pdb_00001yjo 10.2210/pdb1yjo/pdb
RCSB RCSB031589 ? ?
WWPDB D_1000031589 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2005-06-14
2 'Structure model' 1 1 2008-04-30
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' pdbx_struct_conn_angle
5 4 'Structure model' struct_conn
6 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry'
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry'
17 4 'Structure model' '_pdbx_struct_conn_angle.value'
18 4 'Structure model' '_struct_conn.pdbx_dist_value'
19 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
20 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
21 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
22 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
23 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
24 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'
25 4 'Structure model' '_struct_conn.ptnr1_symmetry'
26 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
27 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
28 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
29 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
30 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
31 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'
32 4 'Structure model' '_struct_conn.ptnr2_symmetry'
33 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
34 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
35 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1YJO
_pdbx_database_status.recvd_initial_deposition_date 2005-01-15
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 1YJP
_pdbx_database_related.details .
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Nelson, R.' 1
'Sawaya, M.R.' 2
'Balbirnie, M.' 3
'Madsen, A.O.' 4
'Riekel, C.' 5
'Grothe, R.' 6
'Eisenberg, D.' 7
#
_citation.id primary
_citation.title 'Structure of the cross-beta spine of amyloid-like fibrils.'
_citation.journal_abbrev Nature
_citation.journal_volume 435
_citation.page_first 773
_citation.page_last 778
_citation.year 2005
_citation.journal_id_ASTM NATUAS
_citation.country UK
_citation.journal_id_ISSN 0028-0836
_citation.journal_id_CSD 0006
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 15944695
_citation.pdbx_database_id_DOI 10.1038/nature03680
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Nelson, R.' 1 ?
primary 'Sawaya, M.R.' 2 ?
primary 'Balbirnie, M.' 3 ?
primary 'Madsen, A.O.' 4 ?
primary 'Riekel, C.' 5 ?
primary 'Grothe, R.' 6 ?
primary 'Eisenberg, D.' 7 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Eukaryotic peptide chain release factor GTP-binding subunit' 779.755 1 ? ? 'prion determining domain of Sup35'
?
2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ?
?
3 non-polymer syn 'ACETIC ACID' 60.052 1 ? ? ?
?
4 water nat water 18.015 7 ? ? ?
?
#
_entity_name_com.entity_id 1
_entity_name_com.name
'ERF2, Translation release factor 3, ERF3, ERF-3, Omnipotent suppressor protein 2, G1 to S phase transition protein 1'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code NNQQNY
_entity_poly.pdbx_seq_one_letter_code_can NNQQNY
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'ZINC ION' ZN
3 'ACETIC ACID' ACY
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ASN n
1 2 ASN n
1 3 GLN n
1 4 GLN n
1 5 ASN n
1 6 TYR n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'This sequence is from the prion determining domain of Saccharomyces cerevisiae Sup35'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
HOH non-polymer . WATER ? 'H2 O' 18.015
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ASN 1 1 1 ASN ASN A . n
A 1 2 ASN 2 2 2 ASN ASN A . n
A 1 3 GLN 3 3 3 GLN GLN A . n
A 1 4 GLN 4 4 4 GLN GLN A . n
A 1 5 ASN 5 5 5 ASN ASN A . n
A 1 6 TYR 6 6 6 TYR TYR A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN 1 7 7 ZN ZN A .
C 3 ACY 1 10 10 ACY ACY A .
D 4 HOH 1 8 8 HOH HOH A .
D 4 HOH 2 9 9 HOH HOH A .
D 4 HOH 3 11 11 HOH HOH A .
D 4 HOH 4 12 12 HOH HOH A .
D 4 HOH 5 13 13 HOH HOH A .
D 4 HOH 6 14 14 HOH HOH A .
D 4 HOH 7 15 15 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.2.0005 ? 1
DENZO 'data reduction' . ? 2
SCALEPACK 'data scaling' . ? 3
MLPHARE phasing . ? 4
#
_cell.entry_id 1YJO
_cell.length_a 21.153
_cell.length_b 4.870
_cell.length_c 23.130
_cell.angle_alpha 90.00
_cell.angle_beta 102.93
_cell.angle_gamma 90.00
_cell.Z_PDB 2
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1YJO
_symmetry.space_group_name_H-M 'P 1 21 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 4
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1YJO
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.38
_exptl_crystal.density_percent_sol 10.32
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_details
'ZINC SULFATE, SODIUM ACETATE, HEPES, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.00'
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type MARRESEARCH
_diffrn_detector.pdbx_collection_date 2004-09-22
_diffrn_detector.details 'ELLIPSOIDAL MIRROR'
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'CHANNEL-CUT SI-111 MONOCHROMATOR'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.975
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID13'
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID13
_diffrn_source.pdbx_wavelength 0.975
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1YJO
_reflns.observed_criterion_sigma_I 0.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 80.000
_reflns.d_resolution_high 1.300
_reflns.number_obs 2166
_reflns.number_all ?
_reflns.percent_possible_obs 97.1
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value 0.146
_reflns.pdbx_netI_over_sigmaI 9.8000
_reflns.B_iso_Wilson_estimate 11.70
_reflns.pdbx_redundancy 3.800
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.30
_reflns_shell.d_res_low 1.40
_reflns_shell.percent_possible_all 88.8
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.pdbx_Rsym_value 0.426
_reflns_shell.meanI_over_sigI_obs 2.600
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 1YJO
_refine.ls_number_reflns_obs 1250
_refine.ls_number_reflns_all 1250
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 22.54
_refine.ls_d_res_high 1.30
_refine.ls_percent_reflns_obs 97.9
_refine.ls_R_factor_obs 0.103
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.102
_refine.ls_R_factor_R_free 0.152
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.000
_refine.ls_number_reflns_R_free 52
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.985
_refine.correlation_coeff_Fo_to_Fc_free 0.960
_refine.B_iso_mean 5.76
_refine.aniso_B[1][1] -0.16000
_refine.aniso_B[2][2] -0.44000
_refine.aniso_B[3][3] 0.73000
_refine.aniso_B[1][2] 0.00000
_refine.aniso_B[1][3] 0.28000
_refine.aniso_B[2][3] 0.00000
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct SAD
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.043
_refine.pdbx_overall_ESU_R_Free 0.047
_refine.overall_SU_ML 0.025
_refine.overall_SU_B 1.463
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 55
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 1
_refine_hist.number_atoms_solvent 11
_refine_hist.number_atoms_total 67
_refine_hist.d_res_high 1.30
_refine_hist.d_res_low 22.54
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.007 0.021 ? 58 'X-RAY DIFFRACTION' ?
r_bond_other_d 0.001 0.020 ? 37 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.077 1.892 ? 77 'X-RAY DIFFRACTION' ?
r_angle_other_deg 0.728 3.000 ? 88 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 8.504 5.000 ? 5 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 59.937 28.333 ? 6 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 9.092 15.000 ? 8 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.092 0.200 ? 6 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.004 0.020 ? 71 'X-RAY DIFFRACTION' ?
r_gen_planes_other 0.000 0.020 ? 9 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.225 0.200 ? 4 'X-RAY DIFFRACTION' ?
r_nbd_other 0.187 0.200 ? 20 'X-RAY DIFFRACTION' ?
r_nbtor_refined 0.194 0.200 ? 18 'X-RAY DIFFRACTION' ?
r_nbtor_other 0.083 0.200 ? 33 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.219 0.200 ? 4 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined 0.039 0.200 ? 2 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.171 0.200 ? 6 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other 0.339 0.200 ? 13 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.181 0.200 ? 4 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined 0.016 0.200 ? 1 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 0.663 1.500 ? 43 'X-RAY DIFFRACTION' ?
r_mcbond_other 0.228 1.500 ? 14 'X-RAY DIFFRACTION' ?
r_mcangle_it 0.895 2.000 ? 49 'X-RAY DIFFRACTION' ?
r_scbond_it 1.394 3.000 ? 33 'X-RAY DIFFRACTION' ?
r_scangle_it 1.715 4.500 ? 28 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.30
_refine_ls_shell.d_res_low 1.33
_refine_ls_shell.number_reflns_R_work 76
_refine_ls_shell.R_factor_R_work 0.012
_refine_ls_shell.percent_reflns_obs 87.10
_refine_ls_shell.R_factor_R_free 0.0135
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 5
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.R_factor_all ?
#
_database_PDB_matrix.entry_id 1YJO
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1YJO
_struct.title 'Structure of NNQQNY from yeast prion Sup35 with zinc acetate'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1YJO
_struct_keywords.pdbx_keywords 'PROTEIN BINDING'
_struct_keywords.text 'Keywords beta sheet, steric zipper, glutamine zipper, asparagine zipper, PROTEIN BINDING'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code ERF2_YEAST
_struct_ref.pdbx_db_accession P05453
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code NNQQNY
_struct_ref.pdbx_align_begin 8
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1YJO
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P05453
_struct_ref_seq.db_align_beg 8
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 13
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 2_555 -x,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 2.4350000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A ASN 1 N ? ? ? 1_655 B ZN . ZN ? ? A ASN 1 A ZN 7 1_555 ? ? ? ? ? ? ? 2.119 ? ?
metalc2 metalc ? ? A TYR 6 O ? ? ? 1_555 B ZN . ZN ? ? A TYR 6 A ZN 7 1_555 ? ? ? ? ? ? ? 2.014 ? ?
metalc3 metalc ? ? A TYR 6 OXT ? ? ? 1_555 B ZN . ZN ? ? A TYR 6 A ZN 7 1_555 ? ? ? ? ? ? ? 2.715 ? ?
metalc4 metalc ? ? B ZN . ZN ? ? ? 1_555 C ACY . OXT ? ? A ZN 7 A ACY 10 1_555 ? ? ? ? ? ? ? 1.964 ? ?
metalc5 metalc ? ? B ZN . ZN ? ? ? 1_555 C ACY . O ? ? A ZN 7 A ACY 10 1_545 ? ? ? ? ? ? ? 2.005 ? ?
metalc6 metalc ? ? B ZN . ZN ? ? ? 1_565 C ACY . O ? ? A ZN 7 A ACY 10 1_555 ? ? ? ? ? ? ? 2.005 ? ?
#
_struct_conn_type.id metalc
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 N ? A ASN 1 ? A ASN 1 ? 1_655 ZN ? B ZN . ? A ZN 7 ? 1_555 O ? A TYR 6 ? A TYR 6 ? 1_555 102.5 ?
2 N ? A ASN 1 ? A ASN 1 ? 1_655 ZN ? B ZN . ? A ZN 7 ? 1_555 OXT ? A TYR 6 ? A TYR 6 ? 1_555 153.2 ?
3 O ? A TYR 6 ? A TYR 6 ? 1_555 ZN ? B ZN . ? A ZN 7 ? 1_555 OXT ? A TYR 6 ? A TYR 6 ? 1_555 50.9 ?
4 N ? A ASN 1 ? A ASN 1 ? 1_655 ZN ? B ZN . ? A ZN 7 ? 1_555 OXT ? C ACY . ? A ACY 10 ? 1_555 104.3 ?
5 O ? A TYR 6 ? A TYR 6 ? 1_555 ZN ? B ZN . ? A ZN 7 ? 1_555 OXT ? C ACY . ? A ACY 10 ? 1_555 112.4 ?
6 OXT ? A TYR 6 ? A TYR 6 ? 1_555 ZN ? B ZN . ? A ZN 7 ? 1_555 OXT ? C ACY . ? A ACY 10 ? 1_555 86.6 ?
7 N ? A ASN 1 ? A ASN 1 ? 1_655 ZN ? B ZN . ? A ZN 7 ? 1_555 O ? C ACY . ? A ACY 10 ? 1_545 112.3 ?
8 O ? A TYR 6 ? A TYR 6 ? 1_555 ZN ? B ZN . ? A ZN 7 ? 1_555 O ? C ACY . ? A ACY 10 ? 1_545 113.7 ?
9 OXT ? A TYR 6 ? A TYR 6 ? 1_555 ZN ? B ZN . ? A ZN 7 ? 1_555 O ? C ACY . ? A ACY 10 ? 1_545 85.3 ?
10 OXT ? C ACY . ? A ACY 10 ? 1_555 ZN ? B ZN . ? A ZN 7 ? 1_555 O ? C ACY . ? A ACY 10 ? 1_545 111.0 ?
11 N ? A ASN 1 ? A ASN 1 ? 1_655 ZN ? B ZN . ? A ZN 7 ? 1_555 O ? C ACY . ? A ACY 10 ? 1_555 109.5 ?
12 O ? A TYR 6 ? A TYR 6 ? 1_555 ZN ? B ZN . ? A ZN 7 ? 1_555 O ? C ACY . ? A ACY 10 ? 1_555 118.9 ?
13 OXT ? A TYR 6 ? A TYR 6 ? 1_555 ZN ? B ZN . ? A ZN 7 ? 1_555 O ? C ACY . ? A ACY 10 ? 1_555 85.6 ?
14 OXT ? C ACY . ? A ACY 10 ? 1_555 ZN ? B ZN . ? A ZN 7 ? 1_555 O ? C ACY . ? A ACY 10 ? 1_555 10.6 ?
15 O ? C ACY . ? A ACY 10 ? 1_545 ZN ? B ZN . ? A ZN 7 ? 1_555 O ? C ACY . ? A ACY 10 ? 1_555 100.3 ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A ZN 7 ? 4 'BINDING SITE FOR RESIDUE ZN A 7'
AC2 Software A ACY 10 ? 7 'BINDING SITE FOR RESIDUE ACY A 10'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 4 ASN A 1 ? ASN A 1 . ? 1_655 ?
2 AC1 4 TYR A 6 ? TYR A 6 . ? 1_555 ?
3 AC1 4 ACY C . ? ACY A 10 . ? 1_555 ?
4 AC1 4 ACY C . ? ACY A 10 . ? 1_545 ?
5 AC2 7 ASN A 1 ? ASN A 1 . ? 1_665 ?
6 AC2 7 ASN A 1 ? ASN A 1 . ? 1_655 ?
7 AC2 7 ASN A 2 ? ASN A 2 . ? 1_665 ?
8 AC2 7 TYR A 6 ? TYR A 6 . ? 1_555 ?
9 AC2 7 TYR A 6 ? TYR A 6 . ? 1_565 ?
10 AC2 7 ZN B . ? ZN A 7 . ? 1_565 ?
11 AC2 7 ZN B . ? ZN A 7 . ? 1_555 ?
#
_pdbx_database_remark.id 300
_pdbx_database_remark.text
;BIOMOLECULE: 1
THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT
WHICH CONSISTS OF 1 CHAIN(S). The second beta strand of
the beta sandwich is generated as described in remark 350.
Beta sheets are generated from unit cell translations
along the unit cell b dimension: x,y+1,z.
;
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ACY C C N N 1
ACY O O N N 2
ACY OXT O N N 3
ACY CH3 C N N 4
ACY HXT H N N 5
ACY H1 H N N 6
ACY H2 H N N 7
ACY H3 H N N 8
ASN N N N N 9
ASN CA C N S 10
ASN C C N N 11
ASN O O N N 12
ASN CB C N N 13
ASN CG C N N 14
ASN OD1 O N N 15
ASN ND2 N N N 16
ASN OXT O N N 17
ASN H H N N 18
ASN H2 H N N 19
ASN HA H N N 20
ASN HB2 H N N 21
ASN HB3 H N N 22
ASN HD21 H N N 23
ASN HD22 H N N 24
ASN HXT H N N 25
GLN N N N N 26
GLN CA C N S 27
GLN C C N N 28
GLN O O N N 29
GLN CB C N N 30
GLN CG C N N 31
GLN CD C N N 32
GLN OE1 O N N 33
GLN NE2 N N N 34
GLN OXT O N N 35
GLN H H N N 36
GLN H2 H N N 37
GLN HA H N N 38
GLN HB2 H N N 39
GLN HB3 H N N 40
GLN HG2 H N N 41
GLN HG3 H N N 42
GLN HE21 H N N 43
GLN HE22 H N N 44
GLN HXT H N N 45
HOH O O N N 46
HOH H1 H N N 47
HOH H2 H N N 48
TYR N N N N 49
TYR CA C N S 50
TYR C C N N 51
TYR O O N N 52
TYR CB C N N 53
TYR CG C Y N 54
TYR CD1 C Y N 55
TYR CD2 C Y N 56
TYR CE1 C Y N 57
TYR CE2 C Y N 58
TYR CZ C Y N 59
TYR OH O N N 60
TYR OXT O N N 61
TYR H H N N 62
TYR H2 H N N 63
TYR HA H N N 64
TYR HB2 H N N 65
TYR HB3 H N N 66
TYR HD1 H N N 67
TYR HD2 H N N 68
TYR HE1 H N N 69
TYR HE2 H N N 70
TYR HH H N N 71
TYR HXT H N N 72
ZN ZN ZN N N 73
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ACY C O doub N N 1
ACY C OXT sing N N 2
ACY C CH3 sing N N 3
ACY OXT HXT sing N N 4
ACY CH3 H1 sing N N 5
ACY CH3 H2 sing N N 6
ACY CH3 H3 sing N N 7
ASN N CA sing N N 8
ASN N H sing N N 9
ASN N H2 sing N N 10
ASN CA C sing N N 11
ASN CA CB sing N N 12
ASN CA HA sing N N 13
ASN C O doub N N 14
ASN C OXT sing N N 15
ASN CB CG sing N N 16
ASN CB HB2 sing N N 17
ASN CB HB3 sing N N 18
ASN CG OD1 doub N N 19
ASN CG ND2 sing N N 20
ASN ND2 HD21 sing N N 21
ASN ND2 HD22 sing N N 22
ASN OXT HXT sing N N 23
GLN N CA sing N N 24
GLN N H sing N N 25
GLN N H2 sing N N 26
GLN CA C sing N N 27
GLN CA CB sing N N 28
GLN CA HA sing N N 29
GLN C O doub N N 30
GLN C OXT sing N N 31
GLN CB CG sing N N 32
GLN CB HB2 sing N N 33
GLN CB HB3 sing N N 34
GLN CG CD sing N N 35
GLN CG HG2 sing N N 36
GLN CG HG3 sing N N 37
GLN CD OE1 doub N N 38
GLN CD NE2 sing N N 39
GLN NE2 HE21 sing N N 40
GLN NE2 HE22 sing N N 41
GLN OXT HXT sing N N 42
HOH O H1 sing N N 43
HOH O H2 sing N N 44
TYR N CA sing N N 45
TYR N H sing N N 46
TYR N H2 sing N N 47
TYR CA C sing N N 48
TYR CA CB sing N N 49
TYR CA HA sing N N 50
TYR C O doub N N 51
TYR C OXT sing N N 52
TYR CB CG sing N N 53
TYR CB HB2 sing N N 54
TYR CB HB3 sing N N 55
TYR CG CD1 doub Y N 56
TYR CG CD2 sing Y N 57
TYR CD1 CE1 sing Y N 58
TYR CD1 HD1 sing N N 59
TYR CD2 CE2 doub Y N 60
TYR CD2 HD2 sing N N 61
TYR CE1 CZ doub Y N 62
TYR CE1 HE1 sing N N 63
TYR CE2 CZ sing Y N 64
TYR CE2 HE2 sing N N 65
TYR CZ OH sing N N 66
TYR OH HH sing N N 67
TYR OXT HXT sing N N 68
#
_atom_sites.entry_id 1YJO
_atom_sites.fract_transf_matrix[1][1] 0.047275
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.010853
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.205339
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.044359
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
ZN
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . ASN A 1 1 ? -7.615 2.627 3.239 1.00 4.51 ? 1 ASN A N 1
ATOM 2 C CA . ASN A 1 1 ? -6.403 1.794 2.980 1.00 4.52 ? 1 ASN A CA 1
ATOM 3 C C . ASN A 1 1 ? -5.154 2.381 3.598 1.00 4.76 ? 1 ASN A C 1
ATOM 4 O O . ASN A 1 1 ? -5.052 3.583 3.763 1.00 5.03 ? 1 ASN A O 1
ATOM 5 C CB . ASN A 1 1 ? -6.219 1.595 1.484 1.00 4.79 ? 1 ASN A CB 1
ATOM 6 C CG . ASN A 1 1 ? -7.469 1.079 0.834 1.00 6.31 ? 1 ASN A CG 1
ATOM 7 O OD1 . ASN A 1 1 ? -7.912 -0.028 1.124 1.00 5.83 ? 1 ASN A OD1 1
ATOM 8 N ND2 . ASN A 1 1 ? -8.079 1.901 -0.009 1.00 6.13 ? 1 ASN A ND2 1
ATOM 9 N N . ASN A 1 2 ? -4.224 1.506 3.951 1.00 4.81 ? 2 ASN A N 1
ATOM 10 C CA . ASN A 1 2 ? -2.995 1.882 4.640 1.00 4.73 ? 2 ASN A CA 1
ATOM 11 C C . ASN A 1 2 ? -1.771 1.299 3.937 1.00 4.43 ? 2 ASN A C 1
ATOM 12 O O . ASN A 1 2 ? -1.737 0.108 3.651 1.00 4.42 ? 2 ASN A O 1
ATOM 13 C CB . ASN A 1 2 ? -3.041 1.359 6.079 1.00 4.98 ? 2 ASN A CB 1
ATOM 14 C CG . ASN A 1 2 ? -1.845 1.784 6.884 1.00 5.61 ? 2 ASN A CG 1
ATOM 15 O OD1 . ASN A 1 2 ? -1.609 2.986 7.034 1.00 7.46 ? 2 ASN A OD1 1
ATOM 16 N ND2 . ASN A 1 2 ? -1.080 0.819 7.410 1.00 5.64 ? 2 ASN A ND2 1
ATOM 17 N N . GLN A 1 3 ? -0.784 2.153 3.656 1.00 4.16 ? 3 GLN A N 1
ATOM 18 C CA . GLN A 1 3 ? 0.550 1.721 3.226 1.00 4.34 ? 3 GLN A CA 1
ATOM 19 C C . GLN A 1 3 ? 1.591 2.457 4.068 1.00 4.48 ? 3 GLN A C 1
ATOM 20 O O . GLN A 1 3 ? 1.617 3.677 4.085 1.00 4.56 ? 3 GLN A O 1
ATOM 21 C CB . GLN A 1 3 ? 0.790 1.994 1.735 1.00 4.34 ? 3 GLN A CB 1
ATOM 22 C CG . GLN A 1 3 ? 2.095 1.388 1.209 1.00 4.58 ? 3 GLN A CG 1
ATOM 23 C CD . GLN A 1 3 ? 2.524 1.951 -0.124 1.00 4.63 ? 3 GLN A CD 1
ATOM 24 O OE1 . GLN A 1 3 ? 2.751 3.154 -0.250 1.00 4.86 ? 3 GLN A OE1 1
ATOM 25 N NE2 . GLN A 1 3 ? 2.670 1.085 -1.122 1.00 3.96 ? 3 GLN A NE2 1
ATOM 26 N N . GLN A 1 4 ? 2.425 1.709 4.783 1.00 4.51 ? 4 GLN A N 1
ATOM 27 C CA . GLN A 1 4 ? 3.503 2.295 5.567 1.00 5.00 ? 4 GLN A CA 1
ATOM 28 C C . GLN A 1 4 ? 4.824 1.700 5.121 1.00 4.74 ? 4 GLN A C 1
ATOM 29 O O . GLN A 1 4 ? 4.977 0.485 5.042 1.00 4.74 ? 4 GLN A O 1
ATOM 30 C CB . GLN A 1 4 ? 3.263 2.101 7.063 1.00 5.31 ? 4 GLN A CB 1
ATOM 31 C CG . GLN A 1 4 ? 2.128 2.959 7.602 1.00 6.23 ? 4 GLN A CG 1
ATOM 32 C CD . GLN A 1 4 ? 1.734 2.581 9.002 1.00 6.26 ? 4 GLN A CD 1
ATOM 33 O OE1 . GLN A 1 4 ? 1.144 1.526 9.223 1.00 7.59 ? 4 GLN A OE1 1
ATOM 34 N NE2 . GLN A 1 4 ? 2.088 3.427 9.976 1.00 8.64 ? 4 GLN A NE2 1
ATOM 35 N N . ASN A 1 5 ? 5.758 2.597 4.821 1.00 5.19 ? 5 ASN A N 1
ATOM 36 C CA . ASN A 1 5 ? 7.061 2.275 4.262 1.00 5.29 ? 5 ASN A CA 1
ATOM 37 C C . ASN A 1 5 ? 8.114 2.789 5.215 1.00 5.89 ? 5 ASN A C 1
ATOM 38 O O . ASN A 1 5 ? 8.370 3.981 5.260 1.00 6.26 ? 5 ASN A O 1
ATOM 39 C CB . ASN A 1 5 ? 7.185 2.937 2.893 1.00 5.44 ? 5 ASN A CB 1
ATOM 40 C CG . ASN A 1 5 ? 6.036 2.570 1.974 1.00 4.77 ? 5 ASN A CG 1
ATOM 41 O OD1 . ASN A 1 5 ? 5.922 1.414 1.558 1.00 4.98 ? 5 ASN A OD1 1
ATOM 42 N ND2 . ASN A 1 5 ? 5.157 3.538 1.679 1.00 4.95 ? 5 ASN A ND2 1
ATOM 43 N N . TYR A 1 6 ? 8.692 1.895 6.001 1.00 5.71 ? 6 TYR A N 1
ATOM 44 C CA . TYR A 1 6 ? 9.522 2.304 7.140 1.00 6.06 ? 6 TYR A CA 1
ATOM 45 C C . TYR A 1 6 ? 10.972 2.565 6.754 1.00 6.79 ? 6 TYR A C 1
ATOM 46 O O . TYR A 1 6 ? 11.344 2.407 5.590 1.00 6.49 ? 6 TYR A O 1
ATOM 47 C CB . TYR A 1 6 ? 9.432 1.277 8.273 1.00 6.25 ? 6 TYR A CB 1
ATOM 48 C CG . TYR A 1 6 ? 8.034 1.157 8.838 1.00 6.51 ? 6 TYR A CG 1
ATOM 49 C CD1 . TYR A 1 6 ? 7.124 0.253 8.307 1.00 7.04 ? 6 TYR A CD1 1
ATOM 50 C CD2 . TYR A 1 6 ? 7.618 1.964 9.891 1.00 6.57 ? 6 TYR A CD2 1
ATOM 51 C CE1 . TYR A 1 6 ? 5.838 0.139 8.824 1.00 7.41 ? 6 TYR A CE1 1
ATOM 52 C CE2 . TYR A 1 6 ? 6.330 1.864 10.407 1.00 7.41 ? 6 TYR A CE2 1
ATOM 53 C CZ . TYR A 1 6 ? 5.451 0.942 9.879 1.00 7.24 ? 6 TYR A CZ 1
ATOM 54 O OH . TYR A 1 6 ? 4.177 0.856 10.381 1.00 8.39 ? 6 TYR A OH 1
ATOM 55 O OXT . TYR A 1 6 ? 11.788 2.976 7.592 1.00 8.07 ? 6 TYR A OXT 1
HETATM 56 ZN ZN . ZN B 2 . ? 13.281 2.891 5.326 1.00 6.49 ? 7 ZN A ZN 1
HETATM 57 C C . ACY C 3 . ? 14.386 5.403 6.406 1.00 6.91 ? 10 ACY A C 1
HETATM 58 O O . ACY C 3 . ? 14.546 6.633 6.397 1.00 6.40 ? 10 ACY A O 1
HETATM 59 O OXT . ACY C 3 . ? 13.622 4.803 5.620 1.00 6.13 ? 10 ACY A OXT 1
HETATM 60 C CH3 . ACY C 3 . ? 15.156 4.626 7.437 1.00 7.00 ? 10 ACY A CH3 1
HETATM 61 O O . HOH D 4 . ? -10.505 1.596 3.027 1.00 5.62 ? 8 HOH A O 1
HETATM 62 O O . HOH D 4 . ? -10.556 4.008 1.574 1.00 5.67 ? 9 HOH A O 1
HETATM 63 O O . HOH D 4 . ? 12.427 4.356 9.859 1.00 15.37 ? 11 HOH A O 1
HETATM 64 O O . HOH D 4 . ? 13.627 6.646 9.636 1.00 25.87 ? 12 HOH A O 1
HETATM 65 O O . HOH D 4 . ? 0.421 0.597 11.913 1.00 37.06 ? 13 HOH A O 1
HETATM 66 O O . HOH D 4 . ? -1.801 -0.217 12.498 1.00 39.09 ? 14 HOH A O 1
HETATM 67 O O . HOH D 4 . ? -1.057 2.545 11.391 1.00 49.99 ? 15 HOH A O 1
#
loop_
_atom_site_anisotrop.id
_atom_site_anisotrop.type_symbol
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_alt_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_atom_site_anisotrop.pdbx_PDB_ins_code
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
1 N N . ASN A 1 ? 0.0644 0.0614 0.0454 -0.0045 0.0026 0.0052 1 ASN A N
2 C CA . ASN A 1 ? 0.0638 0.0558 0.0520 -0.0022 -0.0010 0.0003 1 ASN A CA
3 C C . ASN A 1 ? 0.0618 0.0625 0.0565 -0.0015 -0.0006 -0.0005 1 ASN A C
4 O O . ASN A 1 ? 0.0687 0.0619 0.0605 0.0042 -0.0054 -0.0009 1 ASN A O
5 C CB . ASN A 1 ? 0.0673 0.0605 0.0542 0.0014 0.0005 -0.0027 1 ASN A CB
6 C CG . ASN A 1 ? 0.0755 0.0877 0.0767 0.0026 0.0017 -0.0045 1 ASN A CG
7 O OD1 . ASN A 1 ? 0.0854 0.0753 0.0610 0.0060 -0.0037 -0.0119 1 ASN A OD1
8 N ND2 . ASN A 1 ? 0.0686 0.0925 0.0717 0.0087 0.0013 0.0000 1 ASN A ND2
9 N N . ASN A 2 ? 0.0624 0.0619 0.0583 0.0000 0.0016 -0.0005 2 ASN A N
10 C CA . ASN A 2 ? 0.0604 0.0608 0.0584 -0.0003 0.0021 0.0007 2 ASN A CA
11 C C . ASN A 2 ? 0.0571 0.0573 0.0539 0.0010 0.0025 0.0004 2 ASN A C
12 O O . ASN A 2 ? 0.0498 0.0606 0.0576 -0.0008 0.0006 0.0034 2 ASN A O
13 C CB . ASN A 2 ? 0.0638 0.0630 0.0626 -0.0018 0.0050 0.0019 2 ASN A CB
14 C CG . ASN A 2 ? 0.0770 0.0685 0.0678 -0.0010 0.0017 0.0029 2 ASN A CG
15 O OD1 . ASN A 2 ? 0.1179 0.0674 0.0980 -0.0044 -0.0236 0.0039 2 ASN A OD1
16 N ND2 . ASN A 2 ? 0.0767 0.0719 0.0658 -0.0036 -0.0048 0.0054 2 ASN A ND2
17 N N . GLN A 3 ? 0.0565 0.0559 0.0457 0.0036 0.0006 0.0000 3 GLN A N
18 C CA . GLN A 3 ? 0.0567 0.0556 0.0526 0.0010 0.0021 0.0008 3 GLN A CA
19 C C . GLN A 3 ? 0.0566 0.0573 0.0562 0.0041 0.0000 0.0006 3 GLN A C
20 O O . GLN A 3 ? 0.0576 0.0576 0.0580 0.0016 -0.0047 0.0047 3 GLN A O
21 C CB . GLN A 3 ? 0.0533 0.0574 0.0541 -0.0020 0.0018 0.0051 3 GLN A CB
22 C CG . GLN A 3 ? 0.0676 0.0524 0.0540 0.0032 0.0030 0.0010 3 GLN A CG
23 C CD . GLN A 3 ? 0.0680 0.0546 0.0532 -0.0056 0.0007 -0.0003 3 GLN A CD
24 O OE1 . GLN A 3 ? 0.0741 0.0508 0.0598 -0.0099 0.0097 0.0108 3 GLN A OE1
25 N NE2 . GLN A 3 ? 0.0549 0.0403 0.0554 0.0059 -0.0029 -0.0044 3 GLN A NE2
26 N N . GLN A 4 ? 0.0570 0.0573 0.0572 0.0026 0.0000 0.0004 4 GLN A N
27 C CA . GLN A 4 ? 0.0616 0.0655 0.0629 0.0007 -0.0013 0.0019 4 GLN A CA
28 C C . GLN A 4 ? 0.0566 0.0615 0.0619 0.0010 -0.0023 0.0016 4 GLN A C
29 O O . GLN A 4 ? 0.0499 0.0623 0.0680 0.0034 -0.0069 0.0061 4 GLN A O
30 C CB . GLN A 4 ? 0.0638 0.0704 0.0674 -0.0001 -0.0017 0.0035 4 GLN A CB
31 C CG . GLN A 4 ? 0.0784 0.0793 0.0792 -0.0013 0.0012 0.0041 4 GLN A CG
32 C CD . GLN A 4 ? 0.0816 0.0844 0.0719 -0.0070 -0.0074 -0.0050 4 GLN A CD
33 O OE1 . GLN A 4 ? 0.0989 0.1052 0.0841 -0.0241 -0.0067 0.0025 4 GLN A OE1
34 N NE2 . GLN A 4 ? 0.1402 0.1172 0.0710 -0.0095 -0.0036 -0.0172 4 GLN A NE2
35 N N . ASN A 5 ? 0.0596 0.0702 0.0673 -0.0016 0.0008 0.0023 5 ASN A N
36 C CA . ASN A 5 ? 0.0642 0.0709 0.0660 0.0011 -0.0001 0.0008 5 ASN A CA
37 C C . ASN A 5 ? 0.0700 0.0750 0.0788 -0.0028 -0.0004 -0.0018 5 ASN A C
38 O O . ASN A 5 ? 0.0765 0.0718 0.0897 -0.0040 -0.0047 0.0031 5 ASN A O
39 C CB . ASN A 5 ? 0.0620 0.0819 0.0628 0.0018 -0.0001 0.0023 5 ASN A CB
40 C CG . ASN A 5 ? 0.0581 0.0600 0.0633 -0.0007 0.0071 -0.0035 5 ASN A CG
41 O OD1 . ASN A 5 ? 0.0758 0.0486 0.0648 0.0056 -0.0038 -0.0081 5 ASN A OD1
42 N ND2 . ASN A 5 ? 0.0531 0.0675 0.0676 -0.0141 0.0028 0.0079 5 ASN A ND2
43 N N . TYR A 6 ? 0.0720 0.0684 0.0764 -0.0031 -0.0006 -0.0029 6 TYR A N
44 C CA . TYR A 6 ? 0.0787 0.0751 0.0763 -0.0021 0.0001 -0.0018 6 TYR A CA
45 C C . TYR A 6 ? 0.0852 0.0866 0.0863 -0.0004 -0.0020 -0.0014 6 TYR A C
46 O O . TYR A 6 ? 0.0864 0.0773 0.0829 0.0005 0.0017 0.0059 6 TYR A O
47 C CB . TYR A 6 ? 0.0771 0.0825 0.0777 -0.0009 0.0001 -0.0003 6 TYR A CB
48 C CG . TYR A 6 ? 0.0872 0.0761 0.0840 -0.0024 0.0050 0.0029 6 TYR A CG
49 C CD1 . TYR A 6 ? 0.0893 0.0876 0.0905 -0.0054 0.0060 0.0000 6 TYR A CD1
50 C CD2 . TYR A 6 ? 0.0816 0.0839 0.0841 -0.0036 -0.0022 -0.0008 6 TYR A CD2
51 C CE1 . TYR A 6 ? 0.0891 0.0961 0.0963 -0.0052 -0.0026 -0.0014 6 TYR A CE1
52 C CE2 . TYR A 6 ? 0.0928 0.1009 0.0877 -0.0029 0.0030 -0.0028 6 TYR A CE2
53 C CZ . TYR A 6 ? 0.0823 0.1006 0.0922 -0.0007 0.0036 0.0018 6 TYR A CZ
54 O OH . TYR A 6 ? 0.0988 0.1099 0.1102 -0.0075 0.0051 0.0070 6 TYR A OH
55 O OXT . TYR A 6 ? 0.0968 0.1126 0.0971 -0.0028 -0.0050 0.0010 6 TYR A OXT
56 ZN ZN . ZN B . ? 0.0784 0.0821 0.0860 -0.0054 0.0033 -0.0006 7 ZN A ZN
57 C C . ACY C . ? 0.0850 0.0912 0.0865 -0.0052 -0.0040 0.0025 10 ACY A C
58 O O . ACY C . ? 0.0765 0.0812 0.0853 0.0078 -0.0065 0.0147 10 ACY A O
59 O OXT . ACY C . ? 0.0798 0.0706 0.0827 -0.0127 0.0002 -0.0040 10 ACY A OXT
60 C CH3 . ACY C . ? 0.0882 0.0946 0.0832 -0.0065 -0.0043 0.0006 10 ACY A CH3
61 O O . HOH D . ? 0.0682 0.0921 0.0531 -0.0003 0.0099 -0.0098 8 HOH A O
62 O O . HOH D . ? 0.0664 0.0744 0.0747 0.0078 -0.0092 -0.0079 9 HOH A O
63 O O . HOH D . ? 0.1819 0.2319 0.1702 -0.0118 0.0001 0.0000 11 HOH A O
64 O O . HOH D . ? 0.3544 0.3345 0.2941 -0.0113 -0.0031 -0.0055 12 HOH A O
65 O O . HOH D . ? 0.4669 0.4811 0.4602 -0.0008 -0.0010 -0.0069 13 HOH A O
66 O O . HOH D . ? 0.4948 0.5054 0.4851 -0.0031 0.0083 0.0001 14 HOH A O
67 O O . HOH D . ? 0.6356 0.6344 0.6294 -0.0019 0.0013 -0.0016 15 HOH A O
#