data_1VTU
#
_entry.id 1VTU
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.383
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1VTU pdb_00001vtu 10.2210/pdb1vtu/pdb
NDB ZDF040 ? ?
RCSB RCSB003051 ? ?
WWPDB D_1000003051 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2011-07-13
2 'Structure model' 1 1 2012-03-28
3 'Structure model' 1 2 2020-06-24
4 'Structure model' 1 3 2023-12-27
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' Other
2 3 'Structure model' 'Database references'
3 3 'Structure model' 'Source and taxonomy'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' pdbx_entity_src_syn
2 3 'Structure model' struct_ref
3 3 'Structure model' struct_ref_seq
4 4 'Structure model' chem_comp_atom
5 4 'Structure model' chem_comp_bond
6 4 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1VTU
_pdbx_database_status.recvd_initial_deposition_date 1994-08-29
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Doi, M.' 1
'Inoue, M.' 2
'Tomoo, K.' 3
'Ishida, T.' 4
'Ueda, Y.' 5
'Akagi, M.' 6
'Urata, H.' 7
#
_citation.id primary
_citation.title
'Structural Characteristics of Enantiomorphic DNA: Crystal Analysis of Racemates of the d(CGCGCG) Duplex'
_citation.journal_abbrev J.Am.Chem.Soc.
_citation.journal_volume 115
_citation.page_first 10432
_citation.page_last 10433
_citation.year 1993
_citation.journal_id_ASTM JACSAT
_citation.country US
_citation.journal_id_ISSN 0002-7863
_citation.journal_id_CSD 0004
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Doi, M.' 1 ?
primary 'Inoue, M.' 2 ?
primary 'Tomoo, K.' 3 ?
primary 'Ishida, T.' 4 ?
primary 'Ueda, Y.' 5 ?
primary 'Akagi, M.' 6 ?
primary 'Urata, H.' 7 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
;
1810.205 2 ? ? ? ?
2 water nat water 18.015 38 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGCGCG
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DC n
1 4 DG n
1 5 DC n
1 6 DG n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 6
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name s
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DC 3 3 3 DC C A . n
A 1 4 DG 4 4 4 DG G A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
B 1 1 DC 1 7 7 DC C B . n
B 1 2 DG 2 8 8 DG G B . n
B 1 3 DC 3 9 9 DC C B . n
B 1 4 DG 4 10 10 DG G B . n
B 1 5 DC 5 11 11 DC C B . n
B 1 6 DG 6 12 12 DG G B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HOH 1 13 13 HOH HOH A .
C 2 HOH 2 14 14 HOH HOH A .
C 2 HOH 3 15 15 HOH HOH A .
C 2 HOH 4 16 16 HOH HOH A .
C 2 HOH 5 18 18 HOH HOH A .
C 2 HOH 6 21 21 HOH HOH A .
C 2 HOH 7 22 22 HOH HOH A .
C 2 HOH 8 30 30 HOH HOH A .
C 2 HOH 9 31 31 HOH HOH A .
C 2 HOH 10 37 37 HOH HOH A .
C 2 HOH 11 38 38 HOH HOH A .
C 2 HOH 12 43 43 HOH HOH A .
C 2 HOH 13 48 48 HOH HOH A .
C 2 HOH 14 50 50 HOH HOH A .
D 2 HOH 1 17 17 HOH HOH B .
D 2 HOH 2 19 19 HOH HOH B .
D 2 HOH 3 20 20 HOH HOH B .
D 2 HOH 4 23 23 HOH HOH B .
D 2 HOH 5 24 24 HOH HOH B .
D 2 HOH 6 25 25 HOH HOH B .
D 2 HOH 7 26 26 HOH HOH B .
D 2 HOH 8 27 27 HOH HOH B .
D 2 HOH 9 28 28 HOH HOH B .
D 2 HOH 10 29 29 HOH HOH B .
D 2 HOH 11 32 32 HOH HOH B .
D 2 HOH 12 33 33 HOH HOH B .
D 2 HOH 13 34 34 HOH HOH B .
D 2 HOH 14 35 35 HOH HOH B .
D 2 HOH 15 36 36 HOH HOH B .
D 2 HOH 16 39 39 HOH HOH B .
D 2 HOH 17 40 40 HOH HOH B .
D 2 HOH 18 41 41 HOH HOH B .
D 2 HOH 19 42 42 HOH HOH B .
D 2 HOH 20 44 44 HOH HOH B .
D 2 HOH 21 45 45 HOH HOH B .
D 2 HOH 22 46 46 HOH HOH B .
D 2 HOH 23 47 47 HOH HOH B .
D 2 HOH 24 49 49 HOH HOH B .
#
_software.name X-PLOR
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 1VTU
_cell.length_a 29.302
_cell.length_b 23.215
_cell.length_c 23.184
_cell.angle_alpha 72.96
_cell.angle_beta 90.60
_cell.angle_gamma 90.60
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 1VTU
_symmetry.space_group_name_H-M 'P -1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 2
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1VTU
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 40.93
_exptl_crystal.density_Matthews 2.08
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER 1 2 3
1 2 1 MPD 4 5 6
1 3 1 MGCL2 7 8 9
1 4 1 SPERMINE 10 11 12
1 5 1 'NA CACODYLATE' 13 14 15
1 6 2 WATER 16 17 18
1 7 2 MPD 19 20 21
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'RIGAKU AFC-5'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_reflns.entry_id 1VTU
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high ?
_reflns.number_obs 2930
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
#
_refine.entry_id 1VTU
_refine.ls_number_reflns_obs 816
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 3.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 10.000
_refine.ls_d_res_high 2.200
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1990000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.1990000
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_phase_error ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 240
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 38
_refine_hist.number_atoms_total 278
_refine_hist.d_res_high 2.200
_refine_hist.d_res_low 10.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 3.76 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 1VTU
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1VTU
_struct.title
'Structural characteristics of enantiomorphic DNA: Crystal analysis of racemates of the D(CGCGCG) duplex'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1VTU
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Z-DNA, DOUBLE HELIX, RACEMATE, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1VTU
_struct_ref.pdbx_db_accession 1VTU
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1VTU A 1 ? 6 ? 1VTU 1 ? 6 ? 1 6
2 1 1VTU B 1 ? 6 ? 1VTU 7 ? 12 ? 7 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 N3 B DG 12 ? ? O B HOH 46 ? ? 0.88
2 1 C2 B DG 12 ? ? O B HOH 46 ? ? 1.17
3 1 C4 B DG 12 ? ? O B HOH 46 ? ? 1.44
4 1 O6 A DG 2 ? ? H42 B DC 11 ? ? 1.53
5 1 N1 B DG 12 ? ? O B HOH 46 ? ? 1.84
6 1 C5 B DG 12 ? ? O B HOH 46 ? ? 2.09
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.346 1.391 -0.045 0.007 N
2 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.348 1.391 -0.043 0.007 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? "O4'" A DC 1 ? ? 117.38 109.80 7.58 1.10 N
2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.16 108.30 4.86 0.30 N
3 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.63 118.90 3.73 0.60 N
4 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 110.16 106.80 3.36 0.50 N
5 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.16 108.30 3.86 0.30 N
6 1 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 123.05 118.90 4.15 0.60 N
7 1 P B DG 8 ? ? "O5'" B DG 8 ? ? "C5'" B DG 8 ? ? 132.70 120.90 11.80 1.60 N
8 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? "C2'" B DC 9 ? ? 97.76 105.90 -8.14 0.80 N
9 1 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 124.67 118.90 5.77 0.60 N
10 1 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 117.24 121.90 -4.66 0.70 N
11 1 "O5'" B DG 10 ? ? P B DG 10 ? ? OP1 B DG 10 ? ? 100.23 105.70 -5.47 0.90 N
12 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 112.87 108.30 4.57 0.30 N
13 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.14 108.30 2.84 0.30 N
14 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 123.32 118.90 4.42 0.60 N
15 1 "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? 103.78 109.40 -5.62 0.80 N
16 1 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 110.14 106.00 4.14 0.60 N
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DG A 2 ? ? 0.071 'SIDE CHAIN'
2 1 DC A 5 ? ? 0.114 'SIDE CHAIN'
3 1 DG A 6 ? ? 0.054 'SIDE CHAIN'
4 1 DG B 8 ? ? 0.115 'SIDE CHAIN'
5 1 DC B 9 ? ? 0.073 'SIDE CHAIN'
6 1 DG B 10 ? ? 0.072 'SIDE CHAIN'
7 1 DC B 11 ? ? 0.070 'SIDE CHAIN'
8 1 DG B 12 ? ? 0.131 'SIDE CHAIN'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DC OP3 O N N 1
DC P P N N 2
DC OP1 O N N 3
DC OP2 O N N 4
DC "O5'" O N N 5
DC "C5'" C N N 6
DC "C4'" C N R 7
DC "O4'" O N N 8
DC "C3'" C N S 9
DC "O3'" O N N 10
DC "C2'" C N N 11
DC "C1'" C N R 12
DC N1 N N N 13
DC C2 C N N 14
DC O2 O N N 15
DC N3 N N N 16
DC C4 C N N 17
DC N4 N N N 18
DC C5 C N N 19
DC C6 C N N 20
DC HOP3 H N N 21
DC HOP2 H N N 22
DC "H5'" H N N 23
DC "H5''" H N N 24
DC "H4'" H N N 25
DC "H3'" H N N 26
DC "HO3'" H N N 27
DC "H2'" H N N 28
DC "H2''" H N N 29
DC "H1'" H N N 30
DC H41 H N N 31
DC H42 H N N 32
DC H5 H N N 33
DC H6 H N N 34
DG OP3 O N N 35
DG P P N N 36
DG OP1 O N N 37
DG OP2 O N N 38
DG "O5'" O N N 39
DG "C5'" C N N 40
DG "C4'" C N R 41
DG "O4'" O N N 42
DG "C3'" C N S 43
DG "O3'" O N N 44
DG "C2'" C N N 45
DG "C1'" C N R 46
DG N9 N Y N 47
DG C8 C Y N 48
DG N7 N Y N 49
DG C5 C Y N 50
DG C6 C N N 51
DG O6 O N N 52
DG N1 N N N 53
DG C2 C N N 54
DG N2 N N N 55
DG N3 N N N 56
DG C4 C Y N 57
DG HOP3 H N N 58
DG HOP2 H N N 59
DG "H5'" H N N 60
DG "H5''" H N N 61
DG "H4'" H N N 62
DG "H3'" H N N 63
DG "HO3'" H N N 64
DG "H2'" H N N 65
DG "H2''" H N N 66
DG "H1'" H N N 67
DG H8 H N N 68
DG H1 H N N 69
DG H21 H N N 70
DG H22 H N N 71
HOH O O N N 72
HOH H1 H N N 73
HOH H2 H N N 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DC OP3 P sing N N 1
DC OP3 HOP3 sing N N 2
DC P OP1 doub N N 3
DC P OP2 sing N N 4
DC P "O5'" sing N N 5
DC OP2 HOP2 sing N N 6
DC "O5'" "C5'" sing N N 7
DC "C5'" "C4'" sing N N 8
DC "C5'" "H5'" sing N N 9
DC "C5'" "H5''" sing N N 10
DC "C4'" "O4'" sing N N 11
DC "C4'" "C3'" sing N N 12
DC "C4'" "H4'" sing N N 13
DC "O4'" "C1'" sing N N 14
DC "C3'" "O3'" sing N N 15
DC "C3'" "C2'" sing N N 16
DC "C3'" "H3'" sing N N 17
DC "O3'" "HO3'" sing N N 18
DC "C2'" "C1'" sing N N 19
DC "C2'" "H2'" sing N N 20
DC "C2'" "H2''" sing N N 21
DC "C1'" N1 sing N N 22
DC "C1'" "H1'" sing N N 23
DC N1 C2 sing N N 24
DC N1 C6 sing N N 25
DC C2 O2 doub N N 26
DC C2 N3 sing N N 27
DC N3 C4 doub N N 28
DC C4 N4 sing N N 29
DC C4 C5 sing N N 30
DC N4 H41 sing N N 31
DC N4 H42 sing N N 32
DC C5 C6 doub N N 33
DC C5 H5 sing N N 34
DC C6 H6 sing N N 35
DG OP3 P sing N N 36
DG OP3 HOP3 sing N N 37
DG P OP1 doub N N 38
DG P OP2 sing N N 39
DG P "O5'" sing N N 40
DG OP2 HOP2 sing N N 41
DG "O5'" "C5'" sing N N 42
DG "C5'" "C4'" sing N N 43
DG "C5'" "H5'" sing N N 44
DG "C5'" "H5''" sing N N 45
DG "C4'" "O4'" sing N N 46
DG "C4'" "C3'" sing N N 47
DG "C4'" "H4'" sing N N 48
DG "O4'" "C1'" sing N N 49
DG "C3'" "O3'" sing N N 50
DG "C3'" "C2'" sing N N 51
DG "C3'" "H3'" sing N N 52
DG "O3'" "HO3'" sing N N 53
DG "C2'" "C1'" sing N N 54
DG "C2'" "H2'" sing N N 55
DG "C2'" "H2''" sing N N 56
DG "C1'" N9 sing N N 57
DG "C1'" "H1'" sing N N 58
DG N9 C8 sing Y N 59
DG N9 C4 sing Y N 60
DG C8 N7 doub Y N 61
DG C8 H8 sing N N 62
DG N7 C5 sing Y N 63
DG C5 C6 sing N N 64
DG C5 C4 doub Y N 65
DG C6 O6 doub N N 66
DG C6 N1 sing N N 67
DG N1 C2 sing N N 68
DG N1 H1 sing N N 69
DG C2 N2 sing N N 70
DG C2 N3 doub N N 71
DG N2 H21 sing N N 72
DG N2 H22 sing N N 73
DG N3 C4 sing N N 74
HOH O H1 sing N N 75
HOH O H2 sing N N 76
#
_ndb_struct_conf_na.entry_id 1VTU
_ndb_struct_conf_na.feature 'z-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 B DG 6 1_555 -0.749 -0.210 -0.224 3.946 -13.760 1.134 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1
1 A DG 2 1_555 B DC 5 1_555 0.412 -0.371 -0.144 -0.930 -3.635 4.462 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1
1 A DC 3 1_555 B DG 4 1_555 -0.583 -0.407 -0.227 6.380 -3.988 0.586 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1
1 A DG 4 1_555 B DC 3 1_555 0.127 -0.251 -0.066 -8.464 -3.797 1.501 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1
1 A DC 5 1_555 B DG 2 1_555 -0.385 -0.329 0.120 -1.889 -6.089 0.083 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1
1 A DG 6 1_555 B DC 1 1_555 0.143 -0.160 0.016 -3.862 -5.197 -1.627 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 0.100 5.327 3.543 -0.149 -9.527 -2.611 11.656 -0.086 6.075 74.703 -1.165
-9.879 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ?
1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 0.183 -0.548 3.315 1.691 -4.362 -53.632 0.878 0.308 3.258 4.824 1.870
-53.820 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ?
1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.233 5.137 3.814 -0.802 -5.639 -5.383 -6.069 -6.188 6.292 46.188 -6.565
-7.836 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ?
1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 -0.495 -0.811 3.197 -0.855 -6.672 -52.474 1.325 -0.608 3.072 7.511 -0.963
-52.873 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ?
1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -0.021 5.245 3.697 0.485 -7.355 -5.974 -2.718 1.786 6.394 50.916 3.361
-9.485 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ?
#
_atom_sites.entry_id 1VTU
_atom_sites.fract_transf_matrix[1][1] 0.034127
_atom_sites.fract_transf_matrix[1][2] 0.000357
_atom_sites.fract_transf_matrix[1][3] 0.000264
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.043078
_atom_sites.fract_transf_matrix[2][3] -0.013199
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.045115
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
H
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 29.670 19.013 -2.305 1.00 11.26 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 30.109 19.727 -1.144 1.00 2.03 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 30.024 19.014 0.202 1.00 4.76 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 28.912 18.160 0.419 1.00 7.08 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 31.204 18.275 0.705 1.00 9.25 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 31.448 18.682 2.066 1.00 11.24 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 30.766 16.820 0.698 1.00 4.66 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 29.283 16.872 0.935 1.00 3.13 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 28.523 15.737 0.298 1.00 2.53 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 28.542 14.516 0.923 1.00 2.02 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 29.109 14.350 2.005 1.00 2.57 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 27.936 13.476 0.308 1.00 2.60 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 27.317 13.611 -0.848 1.00 2.55 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 26.658 12.564 -1.323 1.00 2.01 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 27.350 14.850 -1.546 1.00 3.90 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 28.005 15.859 -0.948 1.00 2.20 ? 1 DC A C6 1
ATOM 17 H H41 . DC A 1 1 ? 26.650 11.710 -0.777 1.00 0.00 ? 1 DC A H41 1
ATOM 18 H H42 . DC A 1 1 ? 26.205 12.585 -2.219 1.00 0.00 ? 1 DC A H42 1
ATOM 19 H "HO5'" . DC A 1 1 ? 28.916 18.483 -2.020 1.00 0.00 ? 1 DC A "HO5'" 1
ATOM 20 P P . DG A 1 2 ? 32.339 20.004 2.406 1.00 11.95 ? 2 DG A P 1
ATOM 21 O OP1 . DG A 1 2 ? 33.228 20.266 1.251 1.00 14.07 ? 2 DG A OP1 1
ATOM 22 O OP2 . DG A 1 2 ? 32.898 19.823 3.760 1.00 11.38 ? 2 DG A OP2 1
ATOM 23 O "O5'" . DG A 1 2 ? 31.260 21.239 2.456 1.00 8.84 ? 2 DG A "O5'" 1
ATOM 24 C "C5'" . DG A 1 2 ? 30.160 21.415 3.329 1.00 2.91 ? 2 DG A "C5'" 1
ATOM 25 C "C4'" . DG A 1 2 ? 29.365 22.604 2.836 1.00 7.06 ? 2 DG A "C4'" 1
ATOM 26 O "O4'" . DG A 1 2 ? 28.891 22.299 1.551 1.00 11.11 ? 2 DG A "O4'" 1
ATOM 27 C "C3'" . DG A 1 2 ? 28.116 22.828 3.634 1.00 6.73 ? 2 DG A "C3'" 1
ATOM 28 O "O3'" . DG A 1 2 ? 28.486 23.667 4.695 1.00 12.49 ? 2 DG A "O3'" 1
ATOM 29 C "C2'" . DG A 1 2 ? 27.139 23.428 2.648 1.00 6.63 ? 2 DG A "C2'" 1
ATOM 30 C "C1'" . DG A 1 2 ? 27.598 22.879 1.287 1.00 5.81 ? 2 DG A "C1'" 1
ATOM 31 N N9 . DG A 1 2 ? 26.785 21.817 0.632 1.00 5.43 ? 2 DG A N9 1
ATOM 32 C C8 . DG A 1 2 ? 26.281 21.815 -0.636 1.00 3.00 ? 2 DG A C8 1
ATOM 33 N N7 . DG A 1 2 ? 25.788 20.653 -1.007 1.00 4.87 ? 2 DG A N7 1
ATOM 34 C C5 . DG A 1 2 ? 25.994 19.820 0.106 1.00 2.00 ? 2 DG A C5 1
ATOM 35 C C6 . DG A 1 2 ? 25.608 18.491 0.354 1.00 2.00 ? 2 DG A C6 1
ATOM 36 O O6 . DG A 1 2 ? 24.988 17.698 -0.338 1.00 2.00 ? 2 DG A O6 1
ATOM 37 N N1 . DG A 1 2 ? 25.991 18.067 1.573 1.00 4.97 ? 2 DG A N1 1
ATOM 38 C C2 . DG A 1 2 ? 26.657 18.802 2.492 1.00 3.74 ? 2 DG A C2 1
ATOM 39 N N2 . DG A 1 2 ? 27.142 18.152 3.530 1.00 8.20 ? 2 DG A N2 1
ATOM 40 N N3 . DG A 1 2 ? 26.918 20.069 2.341 1.00 6.16 ? 2 DG A N3 1
ATOM 41 C C4 . DG A 1 2 ? 26.585 20.523 1.099 1.00 5.26 ? 2 DG A C4 1
ATOM 42 H H1 . DG A 1 2 ? 25.721 17.120 1.800 1.00 0.00 ? 2 DG A H1 1
ATOM 43 H H21 . DG A 1 2 ? 27.760 18.624 4.163 1.00 0.00 ? 2 DG A H21 1
ATOM 44 H H22 . DG A 1 2 ? 26.820 17.209 3.729 1.00 0.00 ? 2 DG A H22 1
ATOM 45 P P . DC A 1 3 ? 28.538 23.069 6.214 1.00 19.73 ? 3 DC A P 1
ATOM 46 O OP1 . DC A 1 3 ? 29.232 24.056 7.091 1.00 19.15 ? 3 DC A OP1 1
ATOM 47 O OP2 . DC A 1 3 ? 29.008 21.652 6.240 1.00 19.23 ? 3 DC A OP2 1
ATOM 48 O "O5'" . DC A 1 3 ? 26.905 23.120 6.436 1.00 16.82 ? 3 DC A "O5'" 1
ATOM 49 C "C5'" . DC A 1 3 ? 26.328 23.210 7.742 1.00 7.44 ? 3 DC A "C5'" 1
ATOM 50 C "C4'" . DC A 1 3 ? 25.562 22.002 8.178 1.00 4.68 ? 3 DC A "C4'" 1
ATOM 51 O "O4'" . DC A 1 3 ? 24.442 21.771 7.288 1.00 6.62 ? 3 DC A "O4'" 1
ATOM 52 C "C3'" . DC A 1 3 ? 26.334 20.717 8.184 1.00 5.04 ? 3 DC A "C3'" 1
ATOM 53 O "O3'" . DC A 1 3 ? 25.828 19.850 9.205 1.00 8.37 ? 3 DC A "O3'" 1
ATOM 54 C "C2'" . DC A 1 3 ? 25.977 20.175 6.845 1.00 3.12 ? 3 DC A "C2'" 1
ATOM 55 C "C1'" . DC A 1 3 ? 24.543 20.475 6.714 1.00 2.01 ? 3 DC A "C1'" 1
ATOM 56 N N1 . DC A 1 3 ? 24.069 20.506 5.342 1.00 2.01 ? 3 DC A N1 1
ATOM 57 C C2 . DC A 1 3 ? 23.573 19.342 4.781 1.00 2.01 ? 3 DC A C2 1
ATOM 58 O O2 . DC A 1 3 ? 23.433 18.314 5.418 1.00 2.01 ? 3 DC A O2 1
ATOM 59 N N3 . DC A 1 3 ? 23.244 19.345 3.474 1.00 2.01 ? 3 DC A N3 1
ATOM 60 C C4 . DC A 1 3 ? 23.332 20.444 2.761 1.00 2.01 ? 3 DC A C4 1
ATOM 61 N N4 . DC A 1 3 ? 22.910 20.408 1.528 1.00 2.00 ? 3 DC A N4 1
ATOM 62 C C5 . DC A 1 3 ? 23.776 21.672 3.317 1.00 5.54 ? 3 DC A C5 1
ATOM 63 C C6 . DC A 1 3 ? 24.165 21.658 4.613 1.00 3.67 ? 3 DC A C6 1
ATOM 64 H H41 . DC A 1 3 ? 22.929 21.248 0.968 1.00 0.00 ? 3 DC A H41 1
ATOM 65 H H42 . DC A 1 3 ? 22.510 19.559 1.136 1.00 0.00 ? 3 DC A H42 1
ATOM 66 P P . DG A 1 4 ? 26.352 19.980 10.712 1.00 8.10 ? 4 DG A P 1
ATOM 67 O OP1 . DG A 1 4 ? 27.829 20.023 10.682 1.00 15.63 ? 4 DG A OP1 1
ATOM 68 O OP2 . DG A 1 4 ? 25.689 18.928 11.490 1.00 16.02 ? 4 DG A OP2 1
ATOM 69 O "O5'" . DG A 1 4 ? 25.846 21.349 11.311 1.00 14.35 ? 4 DG A "O5'" 1
ATOM 70 C "C5'" . DG A 1 4 ? 24.467 21.541 11.692 1.00 12.93 ? 4 DG A "C5'" 1
ATOM 71 C "C4'" . DG A 1 4 ? 24.251 23.011 12.010 1.00 14.00 ? 4 DG A "C4'" 1
ATOM 72 O "O4'" . DG A 1 4 ? 24.517 23.763 10.838 1.00 11.47 ? 4 DG A "O4'" 1
ATOM 73 C "C3'" . DG A 1 4 ? 22.809 23.256 12.361 1.00 18.35 ? 4 DG A "C3'" 1
ATOM 74 O "O3'" . DG A 1 4 ? 22.616 23.134 13.766 1.00 21.26 ? 4 DG A "O3'" 1
ATOM 75 C "C2'" . DG A 1 4 ? 22.614 24.672 11.932 1.00 14.75 ? 4 DG A "C2'" 1
ATOM 76 C "C1'" . DG A 1 4 ? 23.652 24.841 10.843 1.00 12.14 ? 4 DG A "C1'" 1
ATOM 77 N N9 . DG A 1 4 ? 23.134 24.957 9.508 1.00 9.31 ? 4 DG A N9 1
ATOM 78 C C8 . DG A 1 4 ? 23.371 26.011 8.699 1.00 9.77 ? 4 DG A C8 1
ATOM 79 N N7 . DG A 1 4 ? 22.982 25.844 7.481 1.00 11.57 ? 4 DG A N7 1
ATOM 80 C C5 . DG A 1 4 ? 22.392 24.591 7.511 1.00 7.01 ? 4 DG A C5 1
ATOM 81 C C6 . DG A 1 4 ? 21.704 23.926 6.492 1.00 8.71 ? 4 DG A C6 1
ATOM 82 O O6 . DG A 1 4 ? 21.382 24.379 5.405 1.00 9.80 ? 4 DG A O6 1
ATOM 83 N N1 . DG A 1 4 ? 21.299 22.666 6.889 1.00 8.37 ? 4 DG A N1 1
ATOM 84 C C2 . DG A 1 4 ? 21.436 22.163 8.141 1.00 3.40 ? 4 DG A C2 1
ATOM 85 N N2 . DG A 1 4 ? 21.017 20.935 8.302 1.00 7.80 ? 4 DG A N2 1
ATOM 86 N N3 . DG A 1 4 ? 22.015 22.795 9.146 1.00 8.87 ? 4 DG A N3 1
ATOM 87 C C4 . DG A 1 4 ? 22.501 24.017 8.739 1.00 9.99 ? 4 DG A C4 1
ATOM 88 H H1 . DG A 1 4 ? 20.954 22.052 6.167 1.00 0.00 ? 4 DG A H1 1
ATOM 89 H H21 . DG A 1 4 ? 21.152 20.521 9.211 1.00 0.00 ? 4 DG A H21 1
ATOM 90 H H22 . DG A 1 4 ? 20.619 20.386 7.548 1.00 0.00 ? 4 DG A H22 1
ATOM 91 P P . DC A 1 5 ? 21.555 22.133 14.417 1.00 18.48 ? 5 DC A P 1
ATOM 92 O OP1 . DC A 1 5 ? 21.600 22.438 15.868 1.00 23.70 ? 5 DC A OP1 1
ATOM 93 O OP2 . DC A 1 5 ? 21.847 20.763 13.967 1.00 23.87 ? 5 DC A OP2 1
ATOM 94 O "O5'" . DC A 1 5 ? 20.137 22.568 13.812 1.00 15.65 ? 5 DC A "O5'" 1
ATOM 95 C "C5'" . DC A 1 5 ? 18.953 22.123 14.451 1.00 5.70 ? 5 DC A "C5'" 1
ATOM 96 C "C4'" . DC A 1 5 ? 17.952 21.623 13.484 1.00 2.00 ? 5 DC A "C4'" 1
ATOM 97 O "O4'" . DC A 1 5 ? 17.644 22.594 12.475 1.00 4.84 ? 5 DC A "O4'" 1
ATOM 98 C "C3'" . DC A 1 5 ? 18.388 20.387 12.757 1.00 2.88 ? 5 DC A "C3'" 1
ATOM 99 O "O3'" . DC A 1 5 ? 17.283 19.544 12.568 1.00 7.91 ? 5 DC A "O3'" 1
ATOM 100 C "C2'" . DC A 1 5 ? 18.728 20.896 11.364 1.00 3.91 ? 5 DC A "C2'" 1
ATOM 101 C "C1'" . DC A 1 5 ? 17.751 22.022 11.132 1.00 4.50 ? 5 DC A "C1'" 1
ATOM 102 N N1 . DC A 1 5 ? 18.282 23.002 10.145 1.00 3.63 ? 5 DC A N1 1
ATOM 103 C C2 . DC A 1 5 ? 17.978 22.877 8.810 1.00 2.01 ? 5 DC A C2 1
ATOM 104 O O2 . DC A 1 5 ? 17.425 21.898 8.344 1.00 2.88 ? 5 DC A O2 1
ATOM 105 N N3 . DC A 1 5 ? 18.357 23.853 7.981 1.00 3.99 ? 5 DC A N3 1
ATOM 106 C C4 . DC A 1 5 ? 18.985 24.934 8.438 1.00 3.38 ? 5 DC A C4 1
ATOM 107 N N4 . DC A 1 5 ? 19.185 25.938 7.592 1.00 2.01 ? 5 DC A N4 1
ATOM 108 C C5 . DC A 1 5 ? 19.431 25.018 9.780 1.00 2.02 ? 5 DC A C5 1
ATOM 109 C C6 . DC A 1 5 ? 19.138 23.960 10.568 1.00 4.09 ? 5 DC A C6 1
ATOM 110 H H41 . DC A 1 5 ? 19.696 26.760 7.875 1.00 0.00 ? 5 DC A H41 1
ATOM 111 H H42 . DC A 1 5 ? 18.866 25.838 6.636 1.00 0.00 ? 5 DC A H42 1
ATOM 112 P P . DG A 1 6 ? 16.774 18.441 13.611 1.00 11.70 ? 6 DG A P 1
ATOM 113 O OP1 . DG A 1 6 ? 17.967 17.835 14.264 1.00 10.55 ? 6 DG A OP1 1
ATOM 114 O OP2 . DG A 1 6 ? 15.763 17.631 12.850 1.00 6.51 ? 6 DG A OP2 1
ATOM 115 O "O5'" . DG A 1 6 ? 15.995 19.133 14.821 1.00 13.66 ? 6 DG A "O5'" 1
ATOM 116 C "C5'" . DG A 1 6 ? 14.681 19.667 14.749 1.00 12.12 ? 6 DG A "C5'" 1
ATOM 117 C "C4'" . DG A 1 6 ? 14.414 20.397 16.022 1.00 12.15 ? 6 DG A "C4'" 1
ATOM 118 O "O4'" . DG A 1 6 ? 15.579 21.204 16.278 1.00 12.82 ? 6 DG A "O4'" 1
ATOM 119 C "C3'" . DG A 1 6 ? 13.290 21.381 15.791 1.00 16.54 ? 6 DG A "C3'" 1
ATOM 120 O "O3'" . DG A 1 6 ? 11.939 20.879 15.684 1.00 19.63 ? 6 DG A "O3'" 1
ATOM 121 C "C2'" . DG A 1 6 ? 13.608 22.399 16.835 1.00 17.59 ? 6 DG A "C2'" 1
ATOM 122 C "C1'" . DG A 1 6 ? 15.163 22.464 16.778 1.00 13.47 ? 6 DG A "C1'" 1
ATOM 123 N N9 . DG A 1 6 ? 15.758 23.544 15.967 1.00 10.84 ? 6 DG A N9 1
ATOM 124 C C8 . DG A 1 6 ? 16.545 24.536 16.434 1.00 10.39 ? 6 DG A C8 1
ATOM 125 N N7 . DG A 1 6 ? 16.833 25.425 15.526 1.00 11.69 ? 6 DG A N7 1
ATOM 126 C C5 . DG A 1 6 ? 16.225 24.967 14.363 1.00 8.69 ? 6 DG A C5 1
ATOM 127 C C6 . DG A 1 6 ? 16.242 25.476 13.049 1.00 12.62 ? 6 DG A C6 1
ATOM 128 O O6 . DG A 1 6 ? 16.853 26.441 12.600 1.00 18.80 ? 6 DG A O6 1
ATOM 129 N N1 . DG A 1 6 ? 15.463 24.742 12.229 1.00 12.27 ? 6 DG A N1 1
ATOM 130 C C2 . DG A 1 6 ? 14.735 23.660 12.625 1.00 10.91 ? 6 DG A C2 1
ATOM 131 N N2 . DG A 1 6 ? 14.073 22.970 11.714 1.00 10.57 ? 6 DG A N2 1
ATOM 132 N N3 . DG A 1 6 ? 14.652 23.231 13.849 1.00 11.69 ? 6 DG A N3 1
ATOM 133 C C4 . DG A 1 6 ? 15.494 23.876 14.657 1.00 9.83 ? 6 DG A C4 1
ATOM 134 H "HO3'" . DG A 1 6 ? 11.825 20.165 16.317 1.00 0.00 ? 6 DG A "HO3'" 1
ATOM 135 H H1 . DG A 1 6 ? 15.443 25.014 11.257 1.00 0.00 ? 6 DG A H1 1
ATOM 136 H H21 . DG A 1 6 ? 13.529 22.166 12.005 1.00 0.00 ? 6 DG A H21 1
ATOM 137 H H22 . DG A 1 6 ? 14.142 23.219 10.733 1.00 0.00 ? 6 DG A H22 1
ATOM 138 O "O5'" . DC B 1 1 ? 13.405 26.346 3.336 1.00 15.19 ? 7 DC B "O5'" 1
ATOM 139 C "C5'" . DC B 1 1 ? 13.472 24.969 2.944 1.00 4.19 ? 7 DC B "C5'" 1
ATOM 140 C "C4'" . DC B 1 1 ? 13.492 23.955 4.086 1.00 5.37 ? 7 DC B "C4'" 1
ATOM 141 O "O4'" . DC B 1 1 ? 14.473 24.167 5.095 1.00 5.61 ? 7 DC B "O4'" 1
ATOM 142 C "C3'" . DC B 1 1 ? 12.179 23.897 4.804 1.00 8.13 ? 7 DC B "C3'" 1
ATOM 143 O "O3'" . DC B 1 1 ? 11.771 22.529 4.931 1.00 10.59 ? 7 DC B "O3'" 1
ATOM 144 C "C2'" . DC B 1 1 ? 12.508 24.480 6.162 1.00 2.44 ? 7 DC B "C2'" 1
ATOM 145 C "C1'" . DC B 1 1 ? 13.917 24.064 6.390 1.00 4.16 ? 7 DC B "C1'" 1
ATOM 146 N N1 . DC B 1 1 ? 14.640 24.973 7.282 1.00 8.33 ? 7 DC B N1 1
ATOM 147 C C2 . DC B 1 1 ? 14.732 24.635 8.618 1.00 5.45 ? 7 DC B C2 1
ATOM 148 O O2 . DC B 1 1 ? 14.260 23.597 9.056 1.00 11.23 ? 7 DC B O2 1
ATOM 149 N N3 . DC B 1 1 ? 15.352 25.482 9.448 1.00 4.05 ? 7 DC B N3 1
ATOM 150 C C4 . DC B 1 1 ? 15.955 26.552 8.989 1.00 3.66 ? 7 DC B C4 1
ATOM 151 N N4 . DC B 1 1 ? 16.549 27.334 9.868 1.00 5.84 ? 7 DC B N4 1
ATOM 152 C C5 . DC B 1 1 ? 15.942 26.901 7.617 1.00 4.82 ? 7 DC B C5 1
ATOM 153 C C6 . DC B 1 1 ? 15.218 26.109 6.807 1.00 4.16 ? 7 DC B C6 1
ATOM 154 H H41 . DC B 1 1 ? 16.638 27.022 10.824 1.00 0.00 ? 7 DC B H41 1
ATOM 155 H H42 . DC B 1 1 ? 16.856 28.251 9.594 1.00 0.00 ? 7 DC B H42 1
ATOM 156 H "HO5'" . DC B 1 1 ? 12.576 26.710 2.991 1.00 0.00 ? 7 DC B "HO5'" 1
ATOM 157 P P . DG B 1 2 ? 11.130 21.728 3.702 1.00 12.13 ? 8 DG B P 1
ATOM 158 O OP1 . DG B 1 2 ? 10.341 22.682 2.901 1.00 14.52 ? 8 DG B OP1 1
ATOM 159 O OP2 . DG B 1 2 ? 10.487 20.559 4.318 1.00 16.44 ? 8 DG B OP2 1
ATOM 160 O "O5'" . DG B 1 2 ? 12.207 21.246 2.624 1.00 11.43 ? 8 DG B "O5'" 1
ATOM 161 C "C5'" . DG B 1 2 ? 13.403 20.512 2.732 1.00 4.89 ? 8 DG B "C5'" 1
ATOM 162 C "C4'" . DG B 1 2 ? 14.131 20.657 1.414 1.00 9.74 ? 8 DG B "C4'" 1
ATOM 163 O "O4'" . DG B 1 2 ? 14.538 22.005 1.283 1.00 14.28 ? 8 DG B "O4'" 1
ATOM 164 C "C3'" . DG B 1 2 ? 15.373 19.839 1.429 1.00 12.90 ? 8 DG B "C3'" 1
ATOM 165 O "O3'" . DG B 1 2 ? 15.028 18.572 0.877 1.00 16.72 ? 8 DG B "O3'" 1
ATOM 166 C "C2'" . DG B 1 2 ? 16.290 20.667 0.569 1.00 11.77 ? 8 DG B "C2'" 1
ATOM 167 C "C1'" . DG B 1 2 ? 15.821 22.096 0.736 1.00 9.83 ? 8 DG B "C1'" 1
ATOM 168 N N9 . DG B 1 2 ? 16.646 23.045 1.539 1.00 6.02 ? 8 DG B N9 1
ATOM 169 C C8 . DG B 1 2 ? 17.086 24.262 1.126 1.00 2.01 ? 8 DG B C8 1
ATOM 170 N N7 . DG B 1 2 ? 17.629 24.981 2.054 1.00 2.01 ? 8 DG B N7 1
ATOM 171 C C5 . DG B 1 2 ? 17.468 24.212 3.197 1.00 2.67 ? 8 DG B C5 1
ATOM 172 C C6 . DG B 1 2 ? 17.862 24.440 4.546 1.00 5.83 ? 8 DG B C6 1
ATOM 173 O O6 . DG B 1 2 ? 18.311 25.452 5.076 1.00 4.29 ? 8 DG B O6 1
ATOM 174 N N1 . DG B 1 2 ? 17.664 23.333 5.344 1.00 11.58 ? 8 DG B N1 1
ATOM 175 C C2 . DG B 1 2 ? 16.962 22.225 4.961 1.00 7.20 ? 8 DG B C2 1
ATOM 176 N N2 . DG B 1 2 ? 16.425 21.518 5.926 1.00 10.07 ? 8 DG B N2 1
ATOM 177 N N3 . DG B 1 2 ? 16.660 21.967 3.698 1.00 8.42 ? 8 DG B N3 1
ATOM 178 C C4 . DG B 1 2 ? 16.892 23.014 2.872 1.00 3.63 ? 8 DG B C4 1
ATOM 179 H H1 . DG B 1 2 ? 18.048 23.361 6.279 1.00 0.00 ? 8 DG B H1 1
ATOM 180 H H21 . DG B 1 2 ? 16.739 21.626 6.883 1.00 0.00 ? 8 DG B H21 1
ATOM 181 H H22 . DG B 1 2 ? 15.694 20.851 5.718 1.00 0.00 ? 8 DG B H22 1
ATOM 182 P P . DC B 1 3 ? 15.106 17.172 1.683 1.00 18.91 ? 9 DC B P 1
ATOM 183 O OP1 . DC B 1 3 ? 14.335 16.207 0.844 1.00 16.89 ? 9 DC B OP1 1
ATOM 184 O OP2 . DC B 1 3 ? 14.744 17.347 3.119 1.00 15.75 ? 9 DC B OP2 1
ATOM 185 O "O5'" . DC B 1 3 ? 16.676 16.828 1.638 1.00 13.48 ? 9 DC B "O5'" 1
ATOM 186 C "C5'" . DC B 1 3 ? 17.151 15.620 2.196 1.00 3.67 ? 9 DC B "C5'" 1
ATOM 187 C "C4'" . DC B 1 3 ? 17.855 15.745 3.510 1.00 2.48 ? 9 DC B "C4'" 1
ATOM 188 O "O4'" . DC B 1 3 ? 18.874 16.733 3.444 1.00 8.16 ? 9 DC B "O4'" 1
ATOM 189 C "C3'" . DC B 1 3 ? 17.087 16.073 4.744 1.00 5.30 ? 9 DC B "C3'" 1
ATOM 190 O "O3'" . DC B 1 3 ? 17.665 15.295 5.803 1.00 9.00 ? 9 DC B "O3'" 1
ATOM 191 C "C2'" . DC B 1 3 ? 17.473 17.531 4.961 1.00 7.49 ? 9 DC B "C2'" 1
ATOM 192 C "C1'" . DC B 1 3 ? 18.935 17.559 4.617 1.00 6.88 ? 9 DC B "C1'" 1
ATOM 193 N N1 . DC B 1 3 ? 19.467 18.889 4.252 1.00 2.09 ? 9 DC B N1 1
ATOM 194 C C2 . DC B 1 3 ? 19.966 19.720 5.223 1.00 2.00 ? 9 DC B C2 1
ATOM 195 O O2 . DC B 1 3 ? 20.242 19.372 6.361 1.00 2.03 ? 9 DC B O2 1
ATOM 196 N N3 . DC B 1 3 ? 20.204 20.985 4.900 1.00 2.00 ? 9 DC B N3 1
ATOM 197 C C4 . DC B 1 3 ? 20.045 21.420 3.664 1.00 5.03 ? 9 DC B C4 1
ATOM 198 N N4 . DC B 1 3 ? 20.314 22.701 3.444 1.00 2.00 ? 9 DC B N4 1
ATOM 199 C C5 . DC B 1 3 ? 19.561 20.581 2.617 1.00 5.06 ? 9 DC B C5 1
ATOM 200 C C6 . DC B 1 3 ? 19.272 19.321 2.966 1.00 2.02 ? 9 DC B C6 1
ATOM 201 H H41 . DC B 1 3 ? 20.123 23.117 2.540 1.00 0.00 ? 9 DC B H41 1
ATOM 202 H H42 . DC B 1 3 ? 20.749 23.258 4.169 1.00 0.00 ? 9 DC B H42 1
ATOM 203 P P . DG B 1 4 ? 17.124 13.854 6.233 1.00 8.79 ? 10 DG B P 1
ATOM 204 O OP1 . DG B 1 4 ? 15.685 13.786 5.874 1.00 9.48 ? 10 DG B OP1 1
ATOM 205 O OP2 . DG B 1 4 ? 17.566 13.569 7.611 1.00 14.62 ? 10 DG B OP2 1
ATOM 206 O "O5'" . DG B 1 4 ? 17.691 12.714 5.325 1.00 12.21 ? 10 DG B "O5'" 1
ATOM 207 C "C5'" . DG B 1 4 ? 19.076 12.401 5.281 1.00 10.60 ? 10 DG B "C5'" 1
ATOM 208 C "C4'" . DG B 1 4 ? 19.318 11.704 3.959 1.00 10.30 ? 10 DG B "C4'" 1
ATOM 209 O "O4'" . DG B 1 4 ? 18.988 12.572 2.882 1.00 9.14 ? 10 DG B "O4'" 1
ATOM 210 C "C3'" . DG B 1 4 ? 20.772 11.346 3.832 1.00 10.99 ? 10 DG B "C3'" 1
ATOM 211 O "O3'" . DG B 1 4 ? 20.895 10.046 4.288 1.00 13.16 ? 10 DG B "O3'" 1
ATOM 212 C "C2'" . DG B 1 4 ? 20.974 11.339 2.354 1.00 12.37 ? 10 DG B "C2'" 1
ATOM 213 C "C1'" . DG B 1 4 ? 19.982 12.367 1.882 1.00 12.02 ? 10 DG B "C1'" 1
ATOM 214 N N9 . DG B 1 4 ? 20.555 13.611 1.391 1.00 5.21 ? 10 DG B N9 1
ATOM 215 C C8 . DG B 1 4 ? 20.177 14.133 0.206 1.00 6.46 ? 10 DG B C8 1
ATOM 216 N N7 . DG B 1 4 ? 20.430 15.394 0.070 1.00 6.95 ? 10 DG B N7 1
ATOM 217 C C5 . DG B 1 4 ? 21.146 15.693 1.212 1.00 3.67 ? 10 DG B C5 1
ATOM 218 C C6 . DG B 1 4 ? 21.737 16.905 1.588 1.00 5.50 ? 10 DG B C6 1
ATOM 219 O O6 . DG B 1 4 ? 21.905 17.904 0.903 1.00 8.02 ? 10 DG B O6 1
ATOM 220 N N1 . DG B 1 4 ? 22.166 16.845 2.885 1.00 3.53 ? 10 DG B N1 1
ATOM 221 C C2 . DG B 1 4 ? 22.123 15.753 3.655 1.00 2.01 ? 10 DG B C2 1
ATOM 222 N N2 . DG B 1 4 ? 22.633 15.904 4.838 1.00 6.74 ? 10 DG B N2 1
ATOM 223 N N3 . DG B 1 4 ? 21.628 14.607 3.312 1.00 4.11 ? 10 DG B N3 1
ATOM 224 C C4 . DG B 1 4 ? 21.136 14.644 2.074 1.00 2.70 ? 10 DG B C4 1
ATOM 225 H H1 . DG B 1 4 ? 22.455 17.717 3.301 1.00 0.00 ? 10 DG B H1 1
ATOM 226 H H21 . DG B 1 4 ? 22.575 15.153 5.508 1.00 0.00 ? 10 DG B H21 1
ATOM 227 H H22 . DG B 1 4 ? 23.084 16.773 5.092 1.00 0.00 ? 10 DG B H22 1
ATOM 228 P P . DC B 1 5 ? 21.950 9.685 5.388 1.00 17.52 ? 11 DC B P 1
ATOM 229 O OP1 . DC B 1 5 ? 21.873 8.220 5.575 1.00 21.91 ? 11 DC B OP1 1
ATOM 230 O OP2 . DC B 1 5 ? 21.840 10.579 6.566 1.00 18.88 ? 11 DC B OP2 1
ATOM 231 O "O5'" . DC B 1 5 ? 23.305 10.045 4.649 1.00 15.79 ? 11 DC B "O5'" 1
ATOM 232 C "C5'" . DC B 1 5 ? 24.532 9.632 5.227 1.00 11.20 ? 11 DC B "C5'" 1
ATOM 233 C "C4'" . DC B 1 5 ? 25.527 10.731 5.466 1.00 9.98 ? 11 DC B "C4'" 1
ATOM 234 O "O4'" . DC B 1 5 ? 25.890 11.441 4.273 1.00 8.72 ? 11 DC B "O4'" 1
ATOM 235 C "C3'" . DC B 1 5 ? 25.069 11.766 6.459 1.00 5.35 ? 11 DC B "C3'" 1
ATOM 236 O "O3'" . DC B 1 5 ? 26.157 12.223 7.218 1.00 5.62 ? 11 DC B "O3'" 1
ATOM 237 C "C2'" . DC B 1 5 ? 24.745 12.922 5.542 1.00 2.90 ? 11 DC B "C2'" 1
ATOM 238 C "C1'" . DC B 1 5 ? 25.760 12.857 4.464 1.00 3.03 ? 11 DC B "C1'" 1
ATOM 239 N N1 . DC B 1 5 ? 25.247 13.518 3.237 1.00 4.44 ? 11 DC B N1 1
ATOM 240 C C2 . DC B 1 5 ? 25.541 14.846 2.994 1.00 2.02 ? 11 DC B C2 1
ATOM 241 O O2 . DC B 1 5 ? 26.164 15.560 3.788 1.00 6.40 ? 11 DC B O2 1
ATOM 242 N N3 . DC B 1 5 ? 25.140 15.382 1.836 1.00 4.53 ? 11 DC B N3 1
ATOM 243 C C4 . DC B 1 5 ? 24.515 14.679 0.915 1.00 2.40 ? 11 DC B C4 1
ATOM 244 N N4 . DC B 1 5 ? 24.326 15.243 -0.269 1.00 4.19 ? 11 DC B N4 1
ATOM 245 C C5 . DC B 1 5 ? 24.143 13.341 1.170 1.00 3.54 ? 11 DC B C5 1
ATOM 246 C C6 . DC B 1 5 ? 24.568 12.800 2.321 1.00 2.01 ? 11 DC B C6 1
ATOM 247 H H41 . DC B 1 5 ? 23.897 14.752 -1.039 1.00 0.00 ? 11 DC B H41 1
ATOM 248 H H42 . DC B 1 5 ? 24.544 16.229 -0.361 1.00 0.00 ? 11 DC B H42 1
ATOM 249 P P . DG B 1 6 ? 26.687 11.604 8.604 1.00 12.38 ? 12 DG B P 1
ATOM 250 O OP1 . DG B 1 6 ? 25.518 11.233 9.418 1.00 12.68 ? 12 DG B OP1 1
ATOM 251 O OP2 . DG B 1 6 ? 27.678 12.573 9.168 1.00 12.10 ? 12 DG B OP2 1
ATOM 252 O "O5'" . DG B 1 6 ? 27.389 10.216 8.250 1.00 12.15 ? 12 DG B "O5'" 1
ATOM 253 C "C5'" . DG B 1 6 ? 28.644 9.975 7.630 1.00 14.43 ? 12 DG B "C5'" 1
ATOM 254 C "C4'" . DG B 1 6 ? 28.644 8.488 7.386 1.00 8.85 ? 12 DG B "C4'" 1
ATOM 255 O "O4'" . DG B 1 6 ? 27.728 8.167 6.335 1.00 6.57 ? 12 DG B "O4'" 1
ATOM 256 C "C3'" . DG B 1 6 ? 30.004 7.890 7.093 1.00 10.42 ? 12 DG B "C3'" 1
ATOM 257 O "O3'" . DG B 1 6 ? 30.100 6.682 7.873 1.00 15.04 ? 12 DG B "O3'" 1
ATOM 258 C "C2'" . DG B 1 6 ? 29.893 7.529 5.646 1.00 7.77 ? 12 DG B "C2'" 1
ATOM 259 C "C1'" . DG B 1 6 ? 28.405 7.298 5.440 1.00 4.06 ? 12 DG B "C1'" 1
ATOM 260 N N9 . DG B 1 6 ? 27.986 7.685 4.113 1.00 3.17 ? 12 DG B N9 1
ATOM 261 C C8 . DG B 1 6 ? 27.006 7.099 3.407 1.00 2.40 ? 12 DG B C8 1
ATOM 262 N N7 . DG B 1 6 ? 26.589 7.844 2.426 1.00 7.70 ? 12 DG B N7 1
ATOM 263 C C5 . DG B 1 6 ? 27.362 9.021 2.494 1.00 2.90 ? 12 DG B C5 1
ATOM 264 C C6 . DG B 1 6 ? 27.400 10.183 1.678 1.00 2.01 ? 12 DG B C6 1
ATOM 265 O O6 . DG B 1 6 ? 26.935 10.362 0.545 1.00 2.00 ? 12 DG B O6 1
ATOM 266 N N1 . DG B 1 6 ? 28.133 11.176 2.266 1.00 4.11 ? 12 DG B N1 1
ATOM 267 C C2 . DG B 1 6 ? 28.948 10.993 3.353 1.00 5.43 ? 12 DG B C2 1
ATOM 268 N N2 . DG B 1 6 ? 29.567 12.025 3.889 1.00 5.68 ? 12 DG B N2 1
ATOM 269 N N3 . DG B 1 6 ? 29.115 9.836 3.938 1.00 8.38 ? 12 DG B N3 1
ATOM 270 C C4 . DG B 1 6 ? 28.218 8.918 3.540 1.00 4.08 ? 12 DG B C4 1
ATOM 271 H "HO3'" . DG B 1 6 ? 30.883 6.214 7.561 1.00 0.00 ? 12 DG B "HO3'" 1
ATOM 272 H H1 . DG B 1 6 ? 28.028 12.100 1.884 1.00 0.00 ? 12 DG B H1 1
ATOM 273 H H21 . DG B 1 6 ? 30.084 11.861 4.738 1.00 0.00 ? 12 DG B H21 1
ATOM 274 H H22 . DG B 1 6 ? 29.514 12.947 3.479 1.00 0.00 ? 12 DG B H22 1
HETATM 275 O O . HOH C 2 . ? 32.050 21.145 7.029 1.00 28.46 ? 13 HOH A O 1
HETATM 276 O O . HOH C 2 . ? 29.068 18.914 5.393 1.00 44.50 ? 14 HOH A O 1
HETATM 277 O O . HOH C 2 . ? 29.984 22.375 10.338 1.00 42.18 ? 15 HOH A O 1
HETATM 278 O O . HOH C 2 . ? 23.366 18.189 10.079 1.00 40.78 ? 16 HOH A O 1
HETATM 279 O O . HOH C 2 . ? 23.873 25.915 3.467 1.00 48.29 ? 18 HOH A O 1
HETATM 280 O O . HOH C 2 . ? 18.501 30.071 7.767 1.00 18.25 ? 21 HOH A O 1
HETATM 281 O O . HOH C 2 . ? 21.759 23.286 0.031 1.00 20.48 ? 22 HOH A O 1
HETATM 282 O O . HOH C 2 . ? 20.479 22.825 18.754 1.00 33.55 ? 30 HOH A O 1
HETATM 283 O O . HOH C 2 . ? 12.345 20.580 11.949 1.00 42.55 ? 31 HOH A O 1
HETATM 284 O O . HOH C 2 . ? 28.074 18.984 -4.841 1.00 30.97 ? 37 HOH A O 1
HETATM 285 O O . HOH C 2 . ? 21.256 28.575 7.058 1.00 57.43 ? 38 HOH A O 1
HETATM 286 O O . HOH C 2 . ? 27.451 25.828 9.939 1.00 35.07 ? 43 HOH A O 1
HETATM 287 O O . HOH C 2 . ? 26.519 18.024 -2.520 1.00 30.81 ? 48 HOH A O 1
HETATM 288 O O . HOH C 2 . ? 16.550 20.120 20.829 1.00 37.63 ? 50 HOH A O 1
HETATM 289 O O . HOH D 2 . ? 18.121 18.257 8.476 1.00 41.17 ? 17 HOH B O 1
HETATM 290 O O . HOH D 2 . ? 21.788 13.522 7.235 1.00 12.69 ? 19 HOH B O 1
HETATM 291 O O . HOH D 2 . ? 27.628 13.194 12.603 1.00 63.32 ? 20 HOH B O 1
HETATM 292 O O . HOH D 2 . ? 21.713 17.308 8.022 1.00 17.65 ? 23 HOH B O 1
HETATM 293 O O . HOH D 2 . ? 19.708 15.249 8.152 1.00 54.36 ? 24 HOH B O 1
HETATM 294 O O . HOH D 2 . ? 21.765 18.711 -2.112 1.00 37.67 ? 25 HOH B O 1
HETATM 295 O O . HOH D 2 . ? 20.713 27.112 2.010 1.00 32.46 ? 26 HOH B O 1
HETATM 296 O O . HOH D 2 . ? 8.009 24.413 4.019 1.00 27.87 ? 27 HOH B O 1
HETATM 297 O O . HOH D 2 . ? 19.237 7.649 4.016 1.00 53.25 ? 28 HOH B O 1
HETATM 298 O O . HOH D 2 . ? 27.941 16.708 8.231 1.00 29.76 ? 29 HOH B O 1
HETATM 299 O O . HOH D 2 . ? 27.764 4.683 7.585 1.00 47.04 ? 32 HOH B O 1
HETATM 300 O O . HOH D 2 . ? 10.259 18.237 0.335 1.00 30.55 ? 33 HOH B O 1
HETATM 301 O O . HOH D 2 . ? 14.198 12.880 3.950 1.00 34.22 ? 34 HOH B O 1
HETATM 302 O O . HOH D 2 . ? 25.645 15.530 10.052 1.00 59.16 ? 35 HOH B O 1
HETATM 303 O O . HOH D 2 . ? 25.449 16.345 6.659 1.00 19.78 ? 36 HOH B O 1
HETATM 304 O O . HOH D 2 . ? 15.143 15.717 -1.565 1.00 33.47 ? 39 HOH B O 1
HETATM 305 O O . HOH D 2 . ? 17.578 28.148 4.711 1.00 50.40 ? 40 HOH B O 1
HETATM 306 O O . HOH D 2 . ? 10.637 17.640 3.294 1.00 27.84 ? 41 HOH B O 1
HETATM 307 O O . HOH D 2 . ? 14.313 19.181 5.666 1.00 50.63 ? 42 HOH B O 1
HETATM 308 O O . HOH D 2 . ? 12.155 14.150 0.884 1.00 35.92 ? 44 HOH B O 1
HETATM 309 O O . HOH D 2 . ? 19.320 11.592 -2.988 1.00 52.85 ? 45 HOH B O 1
HETATM 310 O O . HOH D 2 . ? 29.175 9.884 3.061 1.00 48.69 ? 46 HOH B O 1
HETATM 311 O O . HOH D 2 . ? 26.547 3.357 5.003 1.00 40.34 ? 47 HOH B O 1
HETATM 312 O O . HOH D 2 . ? 28.380 15.401 5.479 1.00 19.21 ? 49 HOH B O 1
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