data_1VTR
#
_entry.id 1VTR
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.383
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1VTR pdb_00001vtr 10.2210/pdb1vtr/pdb
NDB UDD006 ? ?
RCSB RCSB003048 ? ?
WWPDB D_1000003048 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2011-07-13
2 'Structure model' 1 1 2023-12-27
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
3 2 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_database_2.pdbx_DOI'
2 2 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1VTR
_pdbx_database_status.recvd_initial_deposition_date 1988-08-18
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.SG_entry .
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Viswamitra, M.A.' 1
'Shakked, Z.' 2
'Jones, P.G.' 3
'Sheldrick, G.M.' 4
'Salisbury, S.A.' 5
'Kennard, O.' 6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'Structure of the Deoxytetranucleotide d-pApTpApT and a Sequence-Dependent Model for Poly(dA-dT)' Biopolymers 21 513 533
1982 BIPMAA US 0006-3525 0161 ? 7066470 ?
1 'DNA Double Helical Fragment at Atomic Resolution' Nature 273 687 688 1978 NATUAS UK 0028-0836 0006 ? ? ?
2 'Crystal Structure of d(A-T)2 and Sequence Specific DNA-Protein Recognition.' Curr.Sci. 47 289 292 1978 CUSCAM II
0011-3891 0064 ? ? ?
3
'A Hypothesis on a Specific Sequence-Dependent Conformation of DNA and Its Relation to the Binding of the Lac-Repressor Protein.'
J.Mol.Biol. 131 669 680 1979 JMOBAK UK 0022-2836 0070 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Viswamitra, M.A.' 1 ?
primary 'Shakked, Z.' 2 ?
primary 'Jones, P.G.' 3 ?
primary 'Sheldrick, G.M.' 4 ?
primary 'Salisbury, S.A.' 5 ?
primary 'Kennard, O.' 6 ?
1 'Viswamitra, M.A.' 7 ?
1 'Kennard, O.' 8 ?
1 'Jones, P.G.' 9 ?
1 'Salisbury, S.A.' 10 ?
1 'Sheldrick, G.M.' 11 ?
1 'Falvello, L.' 12 ?
1 'Shakked, Z.' 13 ?
2 'Viswamitra, M.A.' 14 ?
2 'Kennard, O.' 15 ?
2 'Shakked, Z.' 16 ?
2 'Jones, P.G.' 17 ?
2 'Sheldrick, G.M.' 18 ?
2 'Salisbury, S.' 19 ?
2 'Falvello, L.' 20 ?
3 'Klug, A.' 21 ?
3 'Jack, A.' 22 ?
3 'Viswamitra, M.A.' 23 ?
3 'Kennard, O.' 24 ?
3 'Shakked, Z.' 25 ?
3 'Steitz, T.A.' 26 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*AP*TP*AP*T)-3')
;
1189.842 1 ? ? ? ?
2 water nat water 18.015 42 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DA)(DT)(DA)(DT)'
_entity_poly.pdbx_seq_one_letter_code_can ATAT
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DA n
1 2 DT n
1 3 DA n
1 4 DT n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DA 1 1 1 DA A A . n
A 1 2 DT 2 2 2 DT T A . n
A 1 3 DA 3 3 3 DA A A . n
A 1 4 DT 4 4 4 DT T A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 5 5 HOH HOH A .
B 2 HOH 2 6 6 HOH HOH A .
B 2 HOH 3 7 7 HOH HOH A .
B 2 HOH 4 8 8 HOH HOH A .
B 2 HOH 5 9 9 HOH HOH A .
B 2 HOH 6 10 10 HOH HOH A .
B 2 HOH 7 11 11 HOH HOH A .
B 2 HOH 8 12 12 HOH HOH A .
B 2 HOH 9 13 13 HOH HOH A .
B 2 HOH 10 14 14 HOH HOH A .
B 2 HOH 11 15 15 HOH HOH A .
B 2 HOH 12 16 16 HOH HOH A .
B 2 HOH 13 17 17 HOH HOH A .
B 2 HOH 14 18 18 HOH HOH A .
B 2 HOH 15 19 19 HOH HOH A .
B 2 HOH 16 20 20 HOH HOH A .
B 2 HOH 17 21 21 HOH HOH A .
B 2 HOH 18 22 22 HOH HOH A .
B 2 HOH 19 23 23 HOH HOH A .
B 2 HOH 20 24 24 HOH HOH A .
B 2 HOH 21 25 25 HOH HOH A .
B 2 HOH 22 26 26 HOH HOH A .
B 2 HOH 23 27 27 HOH HOH A .
B 2 HOH 24 28 28 HOH HOH A .
B 2 HOH 25 29 29 HOH HOH A .
B 2 HOH 26 30 30 HOH HOH A .
B 2 HOH 27 31 31 HOH HOH A .
B 2 HOH 28 32 32 HOH HOH A .
B 2 HOH 29 33 33 HOH HOH A .
B 2 HOH 30 34 34 HOH HOH A .
B 2 HOH 31 35 35 HOH HOH A .
B 2 HOH 32 36 36 HOH HOH A .
B 2 HOH 33 37 37 HOH HOH A .
B 2 HOH 34 38 38 HOH HOH A .
B 2 HOH 35 39 39 HOH HOH A .
B 2 HOH 36 40 40 HOH HOH A .
B 2 HOH 37 41 41 HOH HOH A .
B 2 HOH 38 42 42 HOH HOH A .
B 2 HOH 39 43 43 HOH HOH A .
B 2 HOH 40 44 44 HOH HOH A .
B 2 HOH 41 45 45 HOH HOH A .
B 2 HOH 42 46 46 HOH HOH A .
#
_cell.entry_id 1VTR
_cell.length_a 21.121
_cell.length_b 21.294
_cell.length_c 8.770
_cell.angle_alpha 90.00
_cell.angle_beta 97.84
_cell.angle_gamma 90.00
_cell.Z_PDB 2
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 1VTR
_symmetry.space_group_name_H-M 'P 1 21 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 4
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1VTR
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas 1.5250
_exptl_crystal.density_Matthews 1.64
_exptl_crystal.density_percent_sol 25.09
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details 'ROOM TEMPERATURE'
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER 1 2 3
1 2 1 NH4+ 4 5 6
1 3 2 ACETONE 7 8 9
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details 'ROOM TEMPERATURE'
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'SYNTEX P21'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'SEALED TUBE'
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1VTR
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F 1.500
_reflns.d_resolution_low ?
_reflns.d_resolution_high ?
_reflns.number_obs 2717
_reflns.number_all 4528
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
#
_refine.entry_id 1VTR
_refine.ls_number_reflns_obs 2717
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.500
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 1.040
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1530000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min 0.23
_refine.occupancy_max 1.05
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_phase_error ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 83
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 42
_refine_hist.number_atoms_total 125
_refine_hist.d_res_high 1.040
_refine_hist.d_res_low .
#
_database_PDB_matrix.entry_id 1VTR
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1VTR
_struct.title 'STRUCTURE OF THE DEOXYTETRANUCLEOTIDE D-PAPTPAPT AND A SEQUENCE-DEPENDENT MODEL FOR POLY(DA-DT)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1VTR
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'U-DNA, HELIX, OPEN, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1VTR
_struct_ref.pdbx_db_accession 1VTR
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1VTR
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 4
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1VTR
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 4
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 4
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details trimeric
_pdbx_struct_assembly.oligomeric_count 3
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 2_655 -x+1,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 21.1210000000 0.0000000000 1.0000000000
0.0000000000 10.6470000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
3 'crystal symmetry operation' 2_645 -x+1,y-1/2,-z -1.0000000000 0.0000000000 0.0000000000 21.1210000000 0.0000000000 1.0000000000
0.0000000000 -10.6470000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 1 A DT 4 2_645 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 1 A DT 4 2_645 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 2 A DA 3 2_645 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 2 A DA 3 2_645 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C4'" A DA 1 ? ? "C3'" A DA 1 ? ? 1.413 1.521 -0.108 0.010 N
2 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? 1.520 1.420 0.100 0.011 N
3 1 "O4'" A DA 1 ? ? "C4'" A DA 1 ? ? 1.514 1.449 0.065 0.009 N
4 1 C4 A DA 1 ? ? C5 A DA 1 ? ? 1.257 1.383 -0.126 0.007 N
5 1 C5 A DA 1 ? ? C6 A DA 1 ? ? 1.508 1.406 0.102 0.009 N
6 1 C5 A DA 1 ? ? N7 A DA 1 ? ? 1.266 1.388 -0.122 0.006 N
7 1 N9 A DA 1 ? ? C4 A DA 1 ? ? 1.439 1.374 0.065 0.006 N
8 1 C6 A DA 1 ? ? N6 A DA 1 ? ? 1.242 1.335 -0.093 0.008 N
9 1 "C5'" A DT 2 ? ? "C4'" A DT 2 ? ? 1.640 1.512 0.128 0.007 N
10 1 "C4'" A DT 2 ? ? "C3'" A DT 2 ? ? 1.370 1.521 -0.151 0.010 N
11 1 "C2'" A DT 2 ? ? "C1'" A DT 2 ? ? 1.374 1.518 -0.144 0.010 N
12 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? 1.511 1.420 0.091 0.011 N
13 1 N3 A DT 2 ? ? C4 A DT 2 ? ? 1.466 1.382 0.084 0.008 N
14 1 C4 A DT 2 ? ? C5 A DT 2 ? ? 1.318 1.445 -0.127 0.009 N
15 1 C5 A DT 2 ? ? C6 A DT 2 ? ? 1.291 1.339 -0.048 0.007 N
16 1 P A DA 3 ? ? OP2 A DA 3 ? ? 1.336 1.485 -0.149 0.017 N
17 1 P A DA 3 ? ? "O5'" A DA 3 ? ? 1.528 1.593 -0.065 0.010 N
18 1 "O4'" A DA 3 ? ? "C4'" A DA 3 ? ? 1.328 1.446 -0.118 0.010 N
19 1 C2 A DA 3 ? ? N3 A DA 3 ? ? 1.427 1.331 0.096 0.009 N
20 1 C5 A DA 3 ? ? C6 A DA 3 ? ? 1.617 1.406 0.211 0.009 N
21 1 N7 A DA 3 ? ? C8 A DA 3 ? ? 1.241 1.311 -0.070 0.007 N
22 1 C8 A DA 3 ? ? N9 A DA 3 ? ? 1.274 1.373 -0.099 0.008 N
23 1 N9 A DA 3 ? ? C4 A DA 3 ? ? 1.279 1.374 -0.095 0.006 N
24 1 C6 A DA 3 ? ? N6 A DA 3 ? ? 1.409 1.335 0.074 0.008 N
25 1 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 1.573 1.512 0.061 0.007 N
26 1 "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 1.386 1.518 -0.132 0.010 N
27 1 "O4'" A DT 4 ? ? "C4'" A DT 4 ? ? 1.371 1.446 -0.075 0.010 N
28 1 "O3'" A DT 4 ? ? "C3'" A DT 4 ? ? 1.571 1.435 0.136 0.013 N
29 1 N1 A DT 4 ? ? C2 A DT 4 ? ? 1.501 1.376 0.125 0.008 N
30 1 C6 A DT 4 ? ? N1 A DT 4 ? ? 1.324 1.378 -0.054 0.007 N
31 1 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.564 1.496 0.068 0.006 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 102.67 108.00 -5.33 0.70 N
2 1 N1 A DA 1 ? ? C2 A DA 1 ? ? N3 A DA 1 ? ? 124.84 129.30 -4.46 0.50 N
3 1 N3 A DA 1 ? ? C4 A DA 1 ? ? C5 A DA 1 ? ? 137.92 126.80 11.12 0.70 N
4 1 C4 A DA 1 ? ? C5 A DA 1 ? ? C6 A DA 1 ? ? 110.71 117.00 -6.29 0.50 N
5 1 C4 A DA 1 ? ? C5 A DA 1 ? ? N7 A DA 1 ? ? 118.36 110.70 7.66 0.50 N
6 1 N7 A DA 1 ? ? C8 A DA 1 ? ? N9 A DA 1 ? ? 109.96 113.80 -3.84 0.50 N
7 1 N9 A DA 1 ? ? C4 A DA 1 ? ? C5 A DA 1 ? ? 101.82 105.80 -3.98 0.40 N
8 1 N3 A DA 1 ? ? C4 A DA 1 ? ? N9 A DA 1 ? ? 120.19 127.40 -7.21 0.80 N
9 1 "O5'" A DT 2 ? ? "C5'" A DT 2 ? ? "C4'" A DT 2 ? ? 101.04 109.40 -8.36 0.80 N
10 1 "O4'" A DT 2 ? ? "C4'" A DT 2 ? ? "C3'" A DT 2 ? ? 114.35 106.00 8.35 0.60 N
11 1 C2 A DT 2 ? ? N3 A DT 2 ? ? C4 A DT 2 ? ? 121.16 127.20 -6.04 0.60 N
12 1 N3 A DT 2 ? ? C4 A DT 2 ? ? O4 A DT 2 ? ? 104.86 119.90 -15.04 0.60 N
13 1 C5 A DT 2 ? ? C4 A DT 2 ? ? O4 A DT 2 ? ? 138.17 124.90 13.27 0.70 N
14 1 "C1'" A DA 3 ? ? "O4'" A DA 3 ? ? "C4'" A DA 3 ? ? 117.52 110.30 7.22 0.70 N
15 1 "C4'" A DA 3 ? ? "C3'" A DA 3 ? ? "C2'" A DA 3 ? ? 97.91 102.20 -4.29 0.70 N
16 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 99.15 105.90 -6.75 0.80 N
17 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 125.46 129.30 -3.84 0.50 N
18 1 C2 A DA 3 ? ? N3 A DA 3 ? ? C4 A DA 3 ? ? 116.16 110.60 5.56 0.50 N
19 1 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 111.10 117.00 -5.90 0.50 N
20 1 C4 A DA 3 ? ? C5 A DA 3 ? ? N7 A DA 3 ? ? 115.78 110.70 5.08 0.50 N
21 1 C5 A DA 3 ? ? N7 A DA 3 ? ? C8 A DA 3 ? ? 92.63 103.90 -11.27 0.50 N
22 1 N7 A DA 3 ? ? C8 A DA 3 ? ? N9 A DA 3 ? ? 123.85 113.80 10.05 0.50 N
23 1 N9 A DA 3 ? ? C4 A DA 3 ? ? C5 A DA 3 ? ? 100.88 105.80 -4.92 0.40 N
24 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 125.98 118.60 7.38 0.60 N
25 1 C5 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.92 123.70 -8.78 0.80 N
26 1 "O4'" A DT 4 ? ? "C4'" A DT 4 ? ? "C3'" A DT 4 ? ? 112.71 106.00 6.71 0.60 N
27 1 "C1'" A DT 4 ? ? "O4'" A DT 4 ? ? "C4'" A DT 4 ? ? 102.36 110.10 -7.74 1.00 N
28 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 114.16 106.80 7.36 0.50 N
29 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 98.13 108.00 -9.87 0.70 N
30 1 N1 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 118.25 123.10 -4.85 0.80 N
31 1 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 129.00 122.30 6.70 0.60 N
32 1 N3 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 113.51 119.90 -6.39 0.60 N
33 1 C5 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 132.58 124.90 7.68 0.70 N
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DT A 2 ? ? 0.079 'SIDE CHAIN'
2 1 DA A 3 ? ? 0.073 'SIDE CHAIN'
#
loop_
_refine_B_iso.class
_refine_B_iso.details
_refine_B_iso.treatment
_refine_B_iso.pdbx_refine_id
'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION'
'ALL P-ATOMS' TR anisotropic 'X-RAY DIFFRACTION'
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION'
#
loop_
_refine_occupancy.class
_refine_occupancy.treatment
_refine_occupancy.pdbx_refine_id
'ALL ATOMS' fix 'X-RAY DIFFRACTION'
'ALL P-ATOMS' fix 'X-RAY DIFFRACTION'
'ALL WATERS' ref 'X-RAY DIFFRACTION'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DT OP3 O N N 37
DT P P N N 38
DT OP1 O N N 39
DT OP2 O N N 40
DT "O5'" O N N 41
DT "C5'" C N N 42
DT "C4'" C N R 43
DT "O4'" O N N 44
DT "C3'" C N S 45
DT "O3'" O N N 46
DT "C2'" C N N 47
DT "C1'" C N R 48
DT N1 N N N 49
DT C2 C N N 50
DT O2 O N N 51
DT N3 N N N 52
DT C4 C N N 53
DT O4 O N N 54
DT C5 C N N 55
DT C7 C N N 56
DT C6 C N N 57
DT HOP3 H N N 58
DT HOP2 H N N 59
DT "H5'" H N N 60
DT "H5''" H N N 61
DT "H4'" H N N 62
DT "H3'" H N N 63
DT "HO3'" H N N 64
DT "H2'" H N N 65
DT "H2''" H N N 66
DT "H1'" H N N 67
DT H3 H N N 68
DT H71 H N N 69
DT H72 H N N 70
DT H73 H N N 71
DT H6 H N N 72
HOH O O N N 73
HOH H1 H N N 74
HOH H2 H N N 75
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DT OP3 P sing N N 39
DT OP3 HOP3 sing N N 40
DT P OP1 doub N N 41
DT P OP2 sing N N 42
DT P "O5'" sing N N 43
DT OP2 HOP2 sing N N 44
DT "O5'" "C5'" sing N N 45
DT "C5'" "C4'" sing N N 46
DT "C5'" "H5'" sing N N 47
DT "C5'" "H5''" sing N N 48
DT "C4'" "O4'" sing N N 49
DT "C4'" "C3'" sing N N 50
DT "C4'" "H4'" sing N N 51
DT "O4'" "C1'" sing N N 52
DT "C3'" "O3'" sing N N 53
DT "C3'" "C2'" sing N N 54
DT "C3'" "H3'" sing N N 55
DT "O3'" "HO3'" sing N N 56
DT "C2'" "C1'" sing N N 57
DT "C2'" "H2'" sing N N 58
DT "C2'" "H2''" sing N N 59
DT "C1'" N1 sing N N 60
DT "C1'" "H1'" sing N N 61
DT N1 C2 sing N N 62
DT N1 C6 sing N N 63
DT C2 O2 doub N N 64
DT C2 N3 sing N N 65
DT N3 C4 sing N N 66
DT N3 H3 sing N N 67
DT C4 O4 doub N N 68
DT C4 C5 sing N N 69
DT C5 C7 sing N N 70
DT C5 C6 doub N N 71
DT C7 H71 sing N N 72
DT C7 H72 sing N N 73
DT C7 H73 sing N N 74
DT C6 H6 sing N N 75
HOH O H1 sing N N 76
HOH O H2 sing N N 77
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DA 1 1_555 A DT 4 2_645 -0.137 -0.103 -0.277 -13.392 -1.321 3.913 1 A_DA1:DT4_A A 1 ? A 4 ? 20 1
1 A DT 2 1_555 A DA 3 2_645 0.214 -0.033 -0.474 14.444 -0.111 5.799 2 A_DT2:DA3_A A 2 ? A 3 ? 20 1
#
_ndb_struct_na_base_pair_step.model_number 1
_ndb_struct_na_base_pair_step.i_label_asym_id_1 A
_ndb_struct_na_base_pair_step.i_label_comp_id_1 DA
_ndb_struct_na_base_pair_step.i_label_seq_id_1 1
_ndb_struct_na_base_pair_step.i_symmetry_1 1_555
_ndb_struct_na_base_pair_step.j_label_asym_id_1 A
_ndb_struct_na_base_pair_step.j_label_comp_id_1 DT
_ndb_struct_na_base_pair_step.j_label_seq_id_1 4
_ndb_struct_na_base_pair_step.j_symmetry_1 2_645
_ndb_struct_na_base_pair_step.i_label_asym_id_2 A
_ndb_struct_na_base_pair_step.i_label_comp_id_2 DT
_ndb_struct_na_base_pair_step.i_label_seq_id_2 2
_ndb_struct_na_base_pair_step.i_symmetry_2 1_555
_ndb_struct_na_base_pair_step.j_label_asym_id_2 A
_ndb_struct_na_base_pair_step.j_label_comp_id_2 DA
_ndb_struct_na_base_pair_step.j_label_seq_id_2 3
_ndb_struct_na_base_pair_step.j_symmetry_2 2_645
_ndb_struct_na_base_pair_step.shift 0.204
_ndb_struct_na_base_pair_step.slide -0.659
_ndb_struct_na_base_pair_step.rise 2.730
_ndb_struct_na_base_pair_step.tilt 1.494
_ndb_struct_na_base_pair_step.roll 5.976
_ndb_struct_na_base_pair_step.twist 32.948
_ndb_struct_na_base_pair_step.x_displacement -1.948
_ndb_struct_na_base_pair_step.y_displacement -0.152
_ndb_struct_na_base_pair_step.helical_rise 2.580
_ndb_struct_na_base_pair_step.inclination 10.423
_ndb_struct_na_base_pair_step.tip -2.606
_ndb_struct_na_base_pair_step.helical_twist 33.504
_ndb_struct_na_base_pair_step.step_number 1
_ndb_struct_na_base_pair_step.step_name AA_DA1DT2:DA3DT4_AA
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 A
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ?
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 A
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 4
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ?
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 A
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ?
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 A
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 3
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ?
#
_atom_sites.entry_id 1VTR
_atom_sites.fract_transf_matrix[1][1] 0.047346
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.006519
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.046962
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.115101
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O OP3 . DA A 1 1 ? 3.259 -0.129 8.629 1.00 23.53 ? 1 DA A OP3 1
ATOM 2 P P . DA A 1 1 ? 2.191 0.685 7.629 1.00 10.00 ? 1 DA A P 1
ATOM 3 O OP1 . DA A 1 1 ? 2.484 0.186 6.310 1.00 10.74 ? 1 DA A OP1 1
ATOM 4 O OP2 . DA A 1 1 ? 0.830 0.516 8.050 1.00 15.08 ? 1 DA A OP2 1
ATOM 5 O "O5'" . DA A 1 1 ? 2.658 2.166 7.680 1.00 4.49 ? 1 DA A "O5'" 1
ATOM 6 C "C5'" . DA A 1 1 ? 2.354 3.047 8.738 1.00 4.12 ? 1 DA A "C5'" 1
ATOM 7 C "C4'" . DA A 1 1 ? 3.068 4.320 8.631 1.00 2.83 ? 1 DA A "C4'" 1
ATOM 8 O "O4'" . DA A 1 1 ? 4.478 3.930 9.021 1.00 6.47 ? 1 DA A "O4'" 1
ATOM 9 C "C3'" . DA A 1 1 ? 3.176 4.931 7.362 1.00 3.55 ? 1 DA A "C3'" 1
ATOM 10 O "O3'" . DA A 1 1 ? 2.070 5.774 7.179 1.00 5.53 ? 1 DA A "O3'" 1
ATOM 11 C "C2'" . DA A 1 1 ? 4.561 5.603 7.334 1.00 4.90 ? 1 DA A "C2'" 1
ATOM 12 C "C1'" . DA A 1 1 ? 5.484 4.688 8.171 1.00 3.71 ? 1 DA A "C1'" 1
ATOM 13 N N9 . DA A 1 1 ? 6.199 3.617 7.491 1.00 4.81 ? 1 DA A N9 1
ATOM 14 C C8 . DA A 1 1 ? 6.034 2.243 7.467 1.00 3.17 ? 1 DA A C8 1
ATOM 15 N N7 . DA A 1 1 ? 6.955 1.707 6.772 1.00 4.74 ? 1 DA A N7 1
ATOM 16 C C5 . DA A 1 1 ? 7.717 2.653 6.415 1.00 3.49 ? 1 DA A C5 1
ATOM 17 C C6 . DA A 1 1 ? 8.920 2.646 5.506 1.00 3.02 ? 1 DA A C6 1
ATOM 18 N N6 . DA A 1 1 ? 9.459 1.603 5.100 1.00 7.51 ? 1 DA A N6 1
ATOM 19 N N1 . DA A 1 1 ? 9.483 3.844 5.229 1.00 4.27 ? 1 DA A N1 1
ATOM 20 C C2 . DA A 1 1 ? 8.966 4.977 5.732 1.00 5.28 ? 1 DA A C2 1
ATOM 21 N N3 . DA A 1 1 ? 7.776 5.062 6.412 1.00 5.53 ? 1 DA A N3 1
ATOM 22 C C4 . DA A 1 1 ? 7.378 3.831 6.695 1.00 2.45 ? 1 DA A C4 1
ATOM 23 P P . DT A 1 2 ? 1.409 6.055 5.794 1.00 10.00 ? 2 DT A P 1
ATOM 24 O OP1 . DT A 1 2 ? 0.197 6.858 6.174 1.00 8.83 ? 2 DT A OP1 1
ATOM 25 O OP2 . DT A 1 2 ? 1.178 4.816 5.044 1.00 5.12 ? 2 DT A OP2 1
ATOM 26 O "O5'" . DT A 1 2 ? 2.484 6.857 4.951 1.00 3.80 ? 2 DT A "O5'" 1
ATOM 27 C "C5'" . DT A 1 2 ? 2.878 8.252 5.414 1.00 7.67 ? 2 DT A "C5'" 1
ATOM 28 C "C4'" . DT A 1 2 ? 4.070 8.612 4.347 1.00 3.39 ? 2 DT A "C4'" 1
ATOM 29 O "O4'" . DT A 1 2 ? 5.074 7.644 4.510 1.00 4.18 ? 2 DT A "O4'" 1
ATOM 30 C "C3'" . DT A 1 2 ? 3.629 8.757 3.058 1.00 3.96 ? 2 DT A "C3'" 1
ATOM 31 O "O3'" . DT A 1 2 ? 4.213 9.919 2.495 1.00 3.71 ? 2 DT A "O3'" 1
ATOM 32 C "C2'" . DT A 1 2 ? 4.185 7.460 2.449 1.00 7.67 ? 2 DT A "C2'" 1
ATOM 33 C "C1'" . DT A 1 2 ? 5.355 7.163 3.105 1.00 3.86 ? 2 DT A "C1'" 1
ATOM 34 N N1 . DT A 1 2 ? 5.783 5.823 3.238 1.00 3.71 ? 2 DT A N1 1
ATOM 35 C C2 . DT A 1 2 ? 7.066 5.475 2.865 1.00 4.43 ? 2 DT A C2 1
ATOM 36 O O2 . DT A 1 2 ? 7.848 6.326 2.438 1.00 5.59 ? 2 DT A O2 1
ATOM 37 N N3 . DT A 1 2 ? 7.364 4.153 2.850 1.00 4.02 ? 2 DT A N3 1
ATOM 38 C C4 . DT A 1 2 ? 6.365 3.146 3.220 1.00 5.28 ? 2 DT A C4 1
ATOM 39 O O4 . DT A 1 2 ? 6.925 2.023 2.975 1.00 5.22 ? 2 DT A O4 1
ATOM 40 C C5 . DT A 1 2 ? 5.209 3.589 3.672 1.00 4.90 ? 2 DT A C5 1
ATOM 41 C C7 . DT A 1 2 ? 4.199 2.557 4.089 1.00 4.74 ? 2 DT A C7 1
ATOM 42 C C6 . DT A 1 2 ? 4.917 4.847 3.665 1.00 2.04 ? 2 DT A C6 1
ATOM 43 P P . DA A 1 3 ? 3.627 10.714 1.313 1.00 10.00 ? 3 DA A P 1
ATOM 44 O OP1 . DA A 1 3 ? 2.193 10.998 1.563 1.00 5.43 ? 3 DA A OP1 1
ATOM 45 O OP2 . DA A 1 3 ? 3.975 10.159 0.149 1.00 8.77 ? 3 DA A OP2 1
ATOM 46 O "O5'" . DA A 1 3 ? 4.482 11.980 1.363 1.00 4.43 ? 3 DA A "O5'" 1
ATOM 47 C "C5'" . DA A 1 3 ? 4.212 12.990 2.478 1.00 4.74 ? 3 DA A "C5'" 1
ATOM 48 C "C4'" . DA A 1 3 ? 5.097 14.207 2.156 1.00 4.34 ? 3 DA A "C4'" 1
ATOM 49 O "O4'" . DA A 1 3 ? 6.385 13.979 2.386 1.00 4.59 ? 3 DA A "O4'" 1
ATOM 50 C "C3'" . DA A 1 3 ? 5.031 14.784 0.693 1.00 2.04 ? 3 DA A "C3'" 1
ATOM 51 O "O3'" . DA A 1 3 ? 3.863 15.611 0.591 1.00 5.28 ? 3 DA A "O3'" 1
ATOM 52 C "C2'" . DA A 1 3 ? 6.378 15.455 0.674 1.00 6.31 ? 3 DA A "C2'" 1
ATOM 53 C "C1'" . DA A 1 3 ? 7.343 14.669 1.556 1.00 3.39 ? 3 DA A "C1'" 1
ATOM 54 N N9 . DA A 1 3 ? 8.079 13.722 0.772 1.00 5.12 ? 3 DA A N9 1
ATOM 55 C C8 . DA A 1 3 ? 8.145 12.451 0.829 1.00 4.02 ? 3 DA A C8 1
ATOM 56 N N7 . DA A 1 3 ? 8.963 11.772 0.189 1.00 3.64 ? 3 DA A N7 1
ATOM 57 C C5 . DA A 1 3 ? 9.603 12.897 -0.310 1.00 5.28 ? 3 DA A C5 1
ATOM 58 C C6 . DA A 1 3 ? 11.028 13.082 -1.051 1.00 5.37 ? 3 DA A C6 1
ATOM 59 N N6 . DA A 1 3 ? 11.616 11.888 -1.514 1.00 6.88 ? 3 DA A N6 1
ATOM 60 N N1 . DA A 1 3 ? 11.403 14.362 -1.407 1.00 2.83 ? 3 DA A N1 1
ATOM 61 C C2 . DA A 1 3 ? 10.705 15.378 -1.012 1.00 3.24 ? 3 DA A C2 1
ATOM 62 N N3 . DA A 1 3 ? 9.547 15.314 -0.181 1.00 5.37 ? 3 DA A N3 1
ATOM 63 C C4 . DA A 1 3 ? 9.108 14.102 0.115 1.00 4.59 ? 3 DA A C4 1
ATOM 64 P P . DT A 1 4 ? 3.053 15.758 -0.708 1.00 10.00 ? 4 DT A P 1
ATOM 65 O OP1 . DT A 1 4 ? 1.867 16.520 -0.327 1.00 10.02 ? 4 DT A OP1 1
ATOM 66 O OP2 . DT A 1 4 ? 2.957 14.450 -1.477 1.00 7.98 ? 4 DT A OP2 1
ATOM 67 O "O5'" . DT A 1 4 ? 3.967 16.663 -1.555 1.00 6.41 ? 4 DT A "O5'" 1
ATOM 68 C "C5'" . DT A 1 4 ? 4.321 17.930 -1.112 1.00 6.72 ? 4 DT A "C5'" 1
ATOM 69 C "C4'" . DT A 1 4 ? 5.452 18.570 -1.999 1.00 5.12 ? 4 DT A "C4'" 1
ATOM 70 O "O4'" . DT A 1 4 ? 6.617 17.848 -2.019 1.00 6.72 ? 4 DT A "O4'" 1
ATOM 71 C "C3'" . DT A 1 4 ? 4.830 18.730 -3.393 1.00 7.89 ? 4 DT A "C3'" 1
ATOM 72 O "O3'" . DT A 1 4 ? 5.255 20.124 -3.981 1.00 9.64 ? 4 DT A "O3'" 1
ATOM 73 C "C2'" . DT A 1 4 ? 5.628 17.620 -4.163 1.00 3.71 ? 4 DT A "C2'" 1
ATOM 74 C "C1'" . DT A 1 4 ? 6.801 17.599 -3.425 1.00 5.59 ? 4 DT A "C1'" 1
ATOM 75 N N1 . DT A 1 4 ? 7.403 16.186 -3.319 1.00 5.22 ? 4 DT A N1 1
ATOM 76 C C2 . DT A 1 4 ? 8.786 15.982 -3.866 1.00 3.96 ? 4 DT A C2 1
ATOM 77 O O2 . DT A 1 4 ? 9.411 16.968 -4.250 1.00 5.28 ? 4 DT A O2 1
ATOM 78 N N3 . DT A 1 4 ? 9.148 14.697 -3.887 1.00 4.27 ? 4 DT A N3 1
ATOM 79 C C4 . DT A 1 4 ? 8.453 13.592 -3.498 1.00 3.39 ? 4 DT A C4 1
ATOM 80 O O4 . DT A 1 4 ? 9.070 12.579 -3.609 1.00 6.31 ? 4 DT A O4 1
ATOM 81 C C5 . DT A 1 4 ? 7.148 13.879 -2.990 1.00 3.55 ? 4 DT A C5 1
ATOM 82 C C7 . DT A 1 4 ? 6.314 12.660 -2.476 1.00 5.43 ? 4 DT A C7 1
ATOM 83 C C6 . DT A 1 4 ? 6.679 15.118 -3.022 1.00 2.61 ? 4 DT A C6 1
HETATM 84 O O . HOH B 2 . ? 1.618 4.563 2.348 0.97 11.84 ? 5 HOH A O 1
HETATM 85 O O . HOH B 2 . ? 1.995 14.697 4.377 1.00 11.84 ? 6 HOH A O 1
HETATM 86 O O . HOH B 2 . ? -0.976 8.863 3.821 0.65 11.84 ? 7 HOH A O 1
HETATM 87 O O . HOH B 2 . ? -1.840 12.595 3.898 0.58 11.84 ? 8 HOH A O 1
HETATM 88 O O . HOH B 2 . ? 7.087 10.336 3.127 0.37 11.84 ? 9 HOH A O 1
HETATM 89 O O . HOH B 2 . ? 3.027 11.637 -2.092 0.77 11.84 ? 10 HOH A O 1
HETATM 90 O O . HOH B 2 . ? 8.679 17.996 0.445 0.56 11.84 ? 11 HOH A O 1
HETATM 91 O O . HOH B 2 . ? 0.784 10.964 4.169 0.47 11.84 ? 12 HOH A O 1
HETATM 92 O O . HOH B 2 . ? 6.451 8.980 -0.036 0.76 11.84 ? 13 HOH A O 1
HETATM 93 O O . HOH B 2 . ? 0.823 12.023 3.962 0.43 11.84 ? 14 HOH A O 1
HETATM 94 O O . HOH B 2 . ? 7.161 9.944 4.506 0.62 11.84 ? 15 HOH A O 1
HETATM 95 O O . HOH B 2 . ? 12.019 9.459 2.520 0.38 11.84 ? 16 HOH A O 1
HETATM 96 O O . HOH B 2 . ? 1.400 16.799 2.456 0.49 11.84 ? 17 HOH A O 1
HETATM 97 O O . HOH B 2 . ? 1.903 11.886 -1.493 0.41 11.84 ? 18 HOH A O 1
HETATM 98 O O . HOH B 2 . ? 8.429 8.143 -1.743 0.69 11.84 ? 19 HOH A O 1
HETATM 99 O O . HOH B 2 . ? 8.765 7.266 -0.963 0.42 11.84 ? 20 HOH A O 1
HETATM 100 O O . HOH B 2 . ? 1.231 -1.373 10.721 0.61 11.84 ? 21 HOH A O 1
HETATM 101 O O . HOH B 2 . ? 1.283 15.170 2.557 0.35 11.84 ? 22 HOH A O 1
HETATM 102 O O . HOH B 2 . ? 0.344 13.637 -1.612 0.54 11.84 ? 23 HOH A O 1
HETATM 103 O O . HOH B 2 . ? 13.862 7.936 -2.069 0.49 11.84 ? 24 HOH A O 1
HETATM 104 O O . HOH B 2 . ? 0.120 8.707 8.060 0.64 11.84 ? 25 HOH A O 1
HETATM 105 O O . HOH B 2 . ? -0.348 17.582 -1.199 0.61 11.84 ? 26 HOH A O 1
HETATM 106 O O . HOH B 2 . ? 5.551 -0.388 2.051 0.44 11.84 ? 27 HOH A O 1
HETATM 107 O O . HOH B 2 . ? 8.734 9.097 1.672 0.49 11.84 ? 28 HOH A O 1
HETATM 108 O O . HOH B 2 . ? 0.810 1.657 1.910 0.37 11.84 ? 29 HOH A O 1
HETATM 109 O O . HOH B 2 . ? 11.913 9.101 -5.007 0.29 11.84 ? 30 HOH A O 1
HETATM 110 O O . HOH B 2 . ? 9.927 7.738 3.005 0.31 11.84 ? 31 HOH A O 1
HETATM 111 O O . HOH B 2 . ? 9.266 8.950 3.819 0.30 11.84 ? 32 HOH A O 1
HETATM 112 O O . HOH B 2 . ? 9.843 9.146 0.790 0.39 11.84 ? 33 HOH A O 1
HETATM 113 O O . HOH B 2 . ? -0.329 9.636 5.610 0.37 11.84 ? 34 HOH A O 1
HETATM 114 O O . HOH B 2 . ? 6.778 -0.973 6.336 0.34 11.84 ? 35 HOH A O 1
HETATM 115 O O . HOH B 2 . ? 9.653 18.905 2.922 0.32 11.84 ? 36 HOH A O 1
HETATM 116 O O . HOH B 2 . ? -1.387 1.063 9.306 0.23 11.84 ? 37 HOH A O 1
HETATM 117 O O . HOH B 2 . ? 11.275 9.695 0.484 0.30 11.84 ? 38 HOH A O 1
HETATM 118 O O . HOH B 2 . ? 5.636 -0.649 12.990 0.57 11.84 ? 39 HOH A O 1
HETATM 119 O O . HOH B 2 . ? 6.689 9.486 -0.917 0.36 11.84 ? 40 HOH A O 1
HETATM 120 O O . HOH B 2 . ? -0.442 15.180 0.571 0.28 11.84 ? 41 HOH A O 1
HETATM 121 O O . HOH B 2 . ? 10.848 9.037 -2.149 0.37 11.84 ? 42 HOH A O 1
HETATM 122 O O . HOH B 2 . ? 0.418 13.045 0.740 0.46 11.84 ? 43 HOH A O 1
HETATM 123 O O . HOH B 2 . ? 0.268 14.007 2.069 0.28 11.84 ? 44 HOH A O 1
HETATM 124 O O . HOH B 2 . ? 1.084 -0.068 4.354 0.33 11.84 ? 45 HOH A O 1
HETATM 125 O O . HOH B 2 . ? 0.663 13.445 -5.336 0.37 11.84 ? 46 HOH A O 1
#
loop_
_atom_site_anisotrop.id
_atom_site_anisotrop.type_symbol
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_alt_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_atom_site_anisotrop.pdbx_PDB_ins_code
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
2 P P . DA A 1 ? 1.1100 0.7600 0.9600 0.0300 0.2800 -0.1400 1 DA A P
23 P P . DT A 2 ? 0.4900 0.9000 0.5900 -0.1300 0.2400 0.0900 2 DT A P
43 P P . DA A 3 ? 0.9200 0.5500 0.5800 0.0600 -0.0100 -0.0100 3 DA A P
64 P P . DT A 4 ? 0.6500 1.2100 1.2900 0.3700 0.5800 0.5600 4 DT A P
#