data_1VTC
#
_entry.id 1VTC
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.383
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1VTC pdb_00001vtc 10.2210/pdb1vtc/pdb
NDB ADH098 ? ?
RCSB RCSB003036 ? ?
WWPDB D_1000003036 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2011-07-13
2 'Structure model' 1 1 2023-12-27
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
3 2 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_database_2.pdbx_DOI'
2 2 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1VTC
_pdbx_database_status.recvd_initial_deposition_date 1988-08-18
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Wang, A.H.-J.' 1
'Fujii, S.' 2
'Van Boom, J.H.' 3
'Rich, A.' 4
#
_citation.id primary
_citation.title 'Molecular Structure of the Octamer d(G-G-C-C-G-G-C-C) Modified A-DNA'
_citation.journal_abbrev Proc.Natl.Acad.Sci.USA
_citation.journal_volume 79
_citation.page_first 3968
_citation.page_last 3972
_citation.year 1982
_citation.journal_id_ASTM PNASA6
_citation.country US
_citation.journal_id_ISSN 0027-8424
_citation.journal_id_CSD 0040
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Wang, A.H.-J.' 1 ?
primary 'Fujii, S.' 2 ?
primary 'Van Boom, J.H.' 3 ?
primary 'Rich, A.' 4 ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description
;DNA (5'-D(*GP*GP*CP*CP*GP*GP*CP*C)-3')
;
_entity.formula_weight 2428.593
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DC)(DC)(DG)(DG)(DC)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GGCCGGCC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DG n
1 3 DC n
1 4 DC n
1 5 DG n
1 6 DG n
1 7 DC n
1 8 DC n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DC 3 3 3 DC C A . n
A 1 4 DC 4 4 4 DC C A . n
A 1 5 DG 5 5 5 DG G A . n
A 1 6 DG 6 6 6 DG G A . n
A 1 7 DC 7 7 7 DC C A . n
A 1 8 DC 8 8 8 DC C A . n
#
_cell.entry_id 1VTC
_cell.length_a 40.510
_cell.length_b 40.510
_cell.length_c 24.670
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 1VTC
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1VTC
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 40.97
_exptl_crystal.density_Matthews 2.08
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_details 'pH 7.00'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER 1 2 3
1 2 1 'NA CACODYLATE' 4 5 6
1 3 1 SPERMINE 7 8 9
1 4 1 MGCL2 10 11 12
1 5 2 WATER 13 14 15
#
_diffrn.id 1
_diffrn.ambient_temp 255.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'NICOLET P3'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source ?
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1VTC
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high ?
_reflns.number_obs 1221
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
#
_refine.entry_id 1VTC
_refine.ls_number_reflns_obs 874
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I 3.000
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 2.250
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1580000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_phase_error ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 161
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 161
_refine_hist.d_res_high 2.250
_refine_hist.d_res_low .
#
_database_PDB_matrix.entry_id 1VTC
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1VTC
_struct.title 'MOLECULAR STRUCTURE OF THE OCTAMER D(G-G-C-C-G-G-C-C) MODIFIED A-DNA'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1VTC
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA'
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1VTC
_struct_ref.pdbx_db_accession 1VTC
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1VTC
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1VTC
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 770 ?
1 MORE -7 ?
1 'SSA (A^2)' 2940 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 2 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 2 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 2 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 3 N3 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 3 O2 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 3 N4 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 7 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 7 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 7 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? 1.467 1.516 -0.049 0.008 N
2 1 C4 A DG 1 ? ? C5 A DG 1 ? ? 1.336 1.379 -0.043 0.007 N
3 1 C5 A DG 1 ? ? N7 A DG 1 ? ? 1.347 1.388 -0.041 0.006 N
4 1 N7 A DG 1 ? ? C8 A DG 1 ? ? 1.263 1.305 -0.042 0.006 N
5 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.435 1.509 -0.074 0.011 N
6 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.453 1.521 -0.068 0.010 N
7 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 1.458 1.516 -0.058 0.008 N
8 1 C4 A DG 2 ? ? C5 A DG 2 ? ? 1.334 1.379 -0.045 0.007 N
9 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.346 1.388 -0.042 0.006 N
10 1 P A DC 3 ? ? "O5'" A DC 3 ? ? 1.519 1.593 -0.074 0.010 N
11 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? 1.459 1.516 -0.057 0.008 N
12 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.327 1.418 -0.091 0.012 N
13 1 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.277 1.335 -0.058 0.009 N
14 1 N1 A DC 3 ? ? C6 A DC 3 ? ? 1.313 1.367 -0.054 0.006 N
15 1 N3 A DC 3 ? ? C4 A DC 3 ? ? 1.284 1.335 -0.051 0.007 N
16 1 "O3'" A DC 3 ? ? P A DC 4 ? ? 1.528 1.607 -0.079 0.012 Y
17 1 "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 1.457 1.521 -0.064 0.010 N
18 1 C2 A DC 4 ? ? O2 A DC 4 ? ? 1.181 1.240 -0.059 0.009 N
19 1 C4 A DC 4 ? ? N4 A DC 4 ? ? 1.279 1.335 -0.056 0.009 N
20 1 N1 A DC 4 ? ? C6 A DC 4 ? ? 1.318 1.367 -0.049 0.006 N
21 1 N3 A DC 4 ? ? C4 A DC 4 ? ? 1.286 1.335 -0.049 0.007 N
22 1 "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 1.456 1.521 -0.065 0.010 N
23 1 C4 A DG 5 ? ? C5 A DG 5 ? ? 1.325 1.379 -0.054 0.007 N
24 1 C6 A DG 5 ? ? O6 A DG 5 ? ? 1.180 1.237 -0.057 0.009 N
25 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.460 1.521 -0.061 0.010 N
26 1 "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.445 1.518 -0.073 0.010 N
27 1 "O3'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.367 1.419 -0.052 0.006 N
28 1 C4 A DG 6 ? ? C5 A DG 6 ? ? 1.325 1.379 -0.054 0.007 N
29 1 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.257 1.305 -0.048 0.006 N
30 1 N9 A DG 6 ? ? C4 A DG 6 ? ? 1.322 1.375 -0.053 0.008 N
31 1 "O3'" A DG 6 ? ? P A DC 7 ? ? 1.534 1.607 -0.073 0.012 Y
32 1 "C5'" A DC 7 ? ? "C4'" A DC 7 ? ? 1.438 1.509 -0.071 0.011 N
33 1 "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 1.449 1.518 -0.069 0.010 N
34 1 "O3'" A DC 7 ? ? "C3'" A DC 7 ? ? 1.352 1.419 -0.067 0.006 N
35 1 C4 A DC 7 ? ? N4 A DC 7 ? ? 1.280 1.335 -0.055 0.009 N
36 1 N1 A DC 7 ? ? C6 A DC 7 ? ? 1.320 1.367 -0.047 0.006 N
37 1 "O3'" A DC 7 ? ? P A DC 8 ? ? 1.534 1.607 -0.073 0.012 Y
38 1 N1 A DC 8 ? ? C6 A DC 8 ? ? 1.313 1.367 -0.054 0.006 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.24 108.30 3.94 0.30 N
2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.69 108.30 5.39 0.30 N
3 1 N9 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 107.82 105.40 2.42 0.40 N
4 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 110.68 119.70 -9.02 1.20 Y
5 1 "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 102.90 109.40 -6.50 0.80 N
6 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 117.42 108.30 9.12 0.30 N
7 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 101.89 108.00 -6.11 0.70 N
8 1 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DG 5 ? ? 108.57 119.70 -11.13 1.20 Y
9 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 115.35 108.30 7.05 0.30 N
10 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 100.70 108.00 -7.30 0.70 N
11 1 "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? 97.72 102.20 -4.48 0.70 N
12 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 103.34 108.00 -4.66 0.70 N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DC OP3 O N N 1
DC P P N N 2
DC OP1 O N N 3
DC OP2 O N N 4
DC "O5'" O N N 5
DC "C5'" C N N 6
DC "C4'" C N R 7
DC "O4'" O N N 8
DC "C3'" C N S 9
DC "O3'" O N N 10
DC "C2'" C N N 11
DC "C1'" C N R 12
DC N1 N N N 13
DC C2 C N N 14
DC O2 O N N 15
DC N3 N N N 16
DC C4 C N N 17
DC N4 N N N 18
DC C5 C N N 19
DC C6 C N N 20
DC HOP3 H N N 21
DC HOP2 H N N 22
DC "H5'" H N N 23
DC "H5''" H N N 24
DC "H4'" H N N 25
DC "H3'" H N N 26
DC "HO3'" H N N 27
DC "H2'" H N N 28
DC "H2''" H N N 29
DC "H1'" H N N 30
DC H41 H N N 31
DC H42 H N N 32
DC H5 H N N 33
DC H6 H N N 34
DG OP3 O N N 35
DG P P N N 36
DG OP1 O N N 37
DG OP2 O N N 38
DG "O5'" O N N 39
DG "C5'" C N N 40
DG "C4'" C N R 41
DG "O4'" O N N 42
DG "C3'" C N S 43
DG "O3'" O N N 44
DG "C2'" C N N 45
DG "C1'" C N R 46
DG N9 N Y N 47
DG C8 C Y N 48
DG N7 N Y N 49
DG C5 C Y N 50
DG C6 C N N 51
DG O6 O N N 52
DG N1 N N N 53
DG C2 C N N 54
DG N2 N N N 55
DG N3 N N N 56
DG C4 C Y N 57
DG HOP3 H N N 58
DG HOP2 H N N 59
DG "H5'" H N N 60
DG "H5''" H N N 61
DG "H4'" H N N 62
DG "H3'" H N N 63
DG "HO3'" H N N 64
DG "H2'" H N N 65
DG "H2''" H N N 66
DG "H1'" H N N 67
DG H8 H N N 68
DG H1 H N N 69
DG H21 H N N 70
DG H22 H N N 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DC OP3 P sing N N 1
DC OP3 HOP3 sing N N 2
DC P OP1 doub N N 3
DC P OP2 sing N N 4
DC P "O5'" sing N N 5
DC OP2 HOP2 sing N N 6
DC "O5'" "C5'" sing N N 7
DC "C5'" "C4'" sing N N 8
DC "C5'" "H5'" sing N N 9
DC "C5'" "H5''" sing N N 10
DC "C4'" "O4'" sing N N 11
DC "C4'" "C3'" sing N N 12
DC "C4'" "H4'" sing N N 13
DC "O4'" "C1'" sing N N 14
DC "C3'" "O3'" sing N N 15
DC "C3'" "C2'" sing N N 16
DC "C3'" "H3'" sing N N 17
DC "O3'" "HO3'" sing N N 18
DC "C2'" "C1'" sing N N 19
DC "C2'" "H2'" sing N N 20
DC "C2'" "H2''" sing N N 21
DC "C1'" N1 sing N N 22
DC "C1'" "H1'" sing N N 23
DC N1 C2 sing N N 24
DC N1 C6 sing N N 25
DC C2 O2 doub N N 26
DC C2 N3 sing N N 27
DC N3 C4 doub N N 28
DC C4 N4 sing N N 29
DC C4 C5 sing N N 30
DC N4 H41 sing N N 31
DC N4 H42 sing N N 32
DC C5 C6 doub N N 33
DC C5 H5 sing N N 34
DC C6 H6 sing N N 35
DG OP3 P sing N N 36
DG OP3 HOP3 sing N N 37
DG P OP1 doub N N 38
DG P OP2 sing N N 39
DG P "O5'" sing N N 40
DG OP2 HOP2 sing N N 41
DG "O5'" "C5'" sing N N 42
DG "C5'" "C4'" sing N N 43
DG "C5'" "H5'" sing N N 44
DG "C5'" "H5''" sing N N 45
DG "C4'" "O4'" sing N N 46
DG "C4'" "C3'" sing N N 47
DG "C4'" "H4'" sing N N 48
DG "O4'" "C1'" sing N N 49
DG "C3'" "O3'" sing N N 50
DG "C3'" "C2'" sing N N 51
DG "C3'" "H3'" sing N N 52
DG "O3'" "HO3'" sing N N 53
DG "C2'" "C1'" sing N N 54
DG "C2'" "H2'" sing N N 55
DG "C2'" "H2''" sing N N 56
DG "C1'" N9 sing N N 57
DG "C1'" "H1'" sing N N 58
DG N9 C8 sing Y N 59
DG N9 C4 sing Y N 60
DG C8 N7 doub Y N 61
DG C8 H8 sing N N 62
DG N7 C5 sing Y N 63
DG C5 C6 sing N N 64
DG C5 C4 doub Y N 65
DG C6 O6 doub N N 66
DG C6 N1 sing N N 67
DG N1 C2 sing N N 68
DG N1 H1 sing N N 69
DG C2 N2 sing N N 70
DG C2 N3 doub N N 71
DG N2 H21 sing N N 72
DG N2 H22 sing N N 73
DG N3 C4 sing N N 74
#
_ndb_struct_conf_na.entry_id 1VTC
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 7_555 -0.128 -0.493 -0.518 3.940 -0.391 -2.412 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A DG 2 1_555 A DC 7 7_555 -0.193 -0.443 -0.322 0.824 -4.185 1.230 2 A_DG2:DC7_A A 2 ? A 7 ? 19 1
1 A DC 3 1_555 A DG 6 7_555 0.140 -0.398 -0.463 15.567 -9.422 -0.868 3 A_DC3:DG6_A A 3 ? A 6 ? 19 1
1 A DC 4 1_555 A DG 5 7_555 0.157 -0.445 0.015 -13.224 -0.435 -3.588 4 A_DC4:DG5_A A 4 ? A 5 ? 19 1
1 A DG 5 1_555 A DC 4 7_555 -0.157 -0.445 0.015 13.224 -0.435 -3.588 5 A_DG5:DC4_A A 5 ? A 4 ? 19 1
1 A DG 6 1_555 A DC 3 7_555 -0.140 -0.398 -0.463 -15.567 -9.423 -0.868 6 A_DG6:DC3_A A 6 ? A 3 ? 19 1
1 A DC 7 1_555 A DG 2 7_555 0.193 -0.443 -0.322 -0.824 -4.185 1.230 7 A_DC7:DG2_A A 7 ? A 2 ? 19 1
1 A DC 8 1_555 A DG 1 7_555 0.128 -0.493 -0.518 -3.940 -0.391 -2.412 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 7_555 A DG 2 1_555 A DC 7 7_555 -0.377 -0.821 3.424 -3.769 12.787 35.282 -2.956 0.089 2.983 20.227 5.962
37.641 1 AA_DG1DG2:DC7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A DG 2 1_555 A DC 7 7_555 A DC 3 1_555 A DG 6 7_555 0.027 -1.181 2.893 -2.906 2.699 28.868 -2.860 -0.605 2.758 5.382 5.794
29.134 2 AA_DG2DC3:DG6DC7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DC 3 1_555 A DG 6 7_555 A DC 4 1_555 A DG 5 7_555 -0.032 -1.129 4.038 0.375 3.171 43.712 -1.882 0.087 3.950 4.253 -0.503
43.823 3 AA_DC3DC4:DG5DG6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A DC 4 1_555 A DG 5 7_555 A DG 5 1_555 A DC 4 7_555 0.000 -2.016 2.551 0.000 14.794 13.240 -9.422 0.000 0.210 48.395 0.000
19.829 4 AA_DC4DG5:DC4DG5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DG 5 1_555 A DC 4 7_555 A DG 6 1_555 A DC 3 7_555 0.032 -1.129 4.038 -0.375 3.171 43.712 -1.882 -0.087 3.950 4.253 0.503
43.823 5 AA_DG5DG6:DC3DC4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A DG 6 1_555 A DC 3 7_555 A DC 7 1_555 A DG 2 7_555 -0.027 -1.181 2.893 2.906 2.699 28.868 -2.860 0.605 2.758 5.382 -5.794
29.134 6 AA_DG6DC7:DG2DC3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A DC 7 1_555 A DG 2 7_555 A DC 8 1_555 A DG 1 7_555 0.377 -0.821 3.424 3.769 12.787 35.282 -2.956 -0.089 2.983 20.227 -5.962
37.641 7 AA_DC7DC8:DG1DG2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_atom_sites.entry_id 1VTC
_atom_sites.fract_transf_matrix[1][1] 0.024685
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.024685
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.040535
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 7.472 -1.432 -6.048 1.00 10.00 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 6.808 -2.253 -5.114 1.00 10.00 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 7.707 -2.867 -4.120 1.00 10.00 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 9.005 -2.998 -4.655 1.00 10.00 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 7.879 -2.128 -2.855 1.00 10.00 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 7.566 -2.892 -1.734 1.00 10.00 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 9.285 -1.724 -2.740 1.00 10.00 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 9.933 -2.321 -3.917 1.00 10.00 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 10.557 -1.236 -4.673 1.00 10.00 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 10.074 -0.356 -5.562 1.00 10.00 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 10.934 0.459 -5.999 1.00 10.00 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 12.060 0.093 -5.357 1.00 10.00 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 13.329 0.608 -5.433 1.00 10.00 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 13.727 1.522 -6.084 1.00 10.00 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 14.192 -0.071 -4.622 1.00 10.00 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 13.887 -1.110 -3.836 1.00 10.00 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 14.849 -1.616 -3.135 1.00 10.00 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 12.702 -1.587 -3.765 1.00 10.00 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 11.847 -0.944 -4.542 1.00 10.00 ? 1 DG A C4 1
ATOM 20 P P . DG A 1 2 ? 7.213 -2.110 -0.434 1.00 10.00 ? 2 DG A P 1
ATOM 21 O OP1 . DG A 1 2 ? 6.717 -3.032 0.562 1.00 10.00 ? 2 DG A OP1 1
ATOM 22 O OP2 . DG A 1 2 ? 6.346 -1.074 -0.836 1.00 10.00 ? 2 DG A OP2 1
ATOM 23 O "O5'" . DG A 1 2 ? 8.598 -1.580 0.057 1.00 10.00 ? 2 DG A "O5'" 1
ATOM 24 C "C5'" . DG A 1 2 ? 9.371 -2.555 0.700 1.00 10.00 ? 2 DG A "C5'" 1
ATOM 25 C "C4'" . DG A 1 2 ? 10.437 -2.216 1.599 1.00 10.00 ? 2 DG A "C4'" 1
ATOM 26 O "O4'" . DG A 1 2 ? 11.579 -2.068 0.815 1.00 10.00 ? 2 DG A "O4'" 1
ATOM 27 C "C3'" . DG A 1 2 ? 10.345 -0.997 2.385 1.00 10.00 ? 2 DG A "C3'" 1
ATOM 28 O "O3'" . DG A 1 2 ? 10.386 -1.198 3.789 1.00 10.00 ? 2 DG A "O3'" 1
ATOM 29 C "C2'" . DG A 1 2 ? 11.524 -0.186 2.105 1.00 10.00 ? 2 DG A "C2'" 1
ATOM 30 C "C1'" . DG A 1 2 ? 12.191 -0.870 0.973 1.00 10.00 ? 2 DG A "C1'" 1
ATOM 31 N N9 . DG A 1 2 ? 12.042 0.022 -0.176 1.00 10.00 ? 2 DG A N9 1
ATOM 32 C C8 . DG A 1 2 ? 11.014 0.220 -1.005 1.00 10.00 ? 2 DG A C8 1
ATOM 33 N N7 . DG A 1 2 ? 11.226 1.094 -1.916 1.00 10.00 ? 2 DG A N7 1
ATOM 34 C C5 . DG A 1 2 ? 12.480 1.512 -1.664 1.00 10.00 ? 2 DG A C5 1
ATOM 35 C C6 . DG A 1 2 ? 13.248 2.451 -2.313 1.00 10.00 ? 2 DG A C6 1
ATOM 36 O O6 . DG A 1 2 ? 12.965 3.127 -3.262 1.00 10.00 ? 2 DG A O6 1
ATOM 37 N N1 . DG A 1 2 ? 14.467 2.562 -1.732 1.00 10.00 ? 2 DG A N1 1
ATOM 38 C C2 . DG A 1 2 ? 14.886 1.870 -0.665 1.00 10.00 ? 2 DG A C2 1
ATOM 39 N N2 . DG A 1 2 ? 16.067 2.057 -0.183 1.00 10.00 ? 2 DG A N2 1
ATOM 40 N N3 . DG A 1 2 ? 14.162 0.996 -0.063 1.00 10.00 ? 2 DG A N3 1
ATOM 41 C C4 . DG A 1 2 ? 12.970 0.871 -0.602 1.00 10.00 ? 2 DG A C4 1
ATOM 42 P P . DC A 1 3 ? 9.854 0.050 4.536 1.00 10.00 ? 3 DC A P 1
ATOM 43 O OP1 . DC A 1 3 ? 9.135 -0.312 5.725 1.00 10.00 ? 3 DC A OP1 1
ATOM 44 O OP2 . DC A 1 3 ? 9.092 0.751 3.538 1.00 10.00 ? 3 DC A OP2 1
ATOM 45 O "O5'" . DC A 1 3 ? 11.138 0.752 4.945 1.00 10.00 ? 3 DC A "O5'" 1
ATOM 46 C "C5'" . DC A 1 3 ? 12.359 0.100 5.004 1.00 10.00 ? 3 DC A "C5'" 1
ATOM 47 C "C4'" . DC A 1 3 ? 13.325 1.206 4.939 1.00 10.00 ? 3 DC A "C4'" 1
ATOM 48 O "O4'" . DC A 1 3 ? 13.623 1.494 3.597 1.00 10.00 ? 3 DC A "O4'" 1
ATOM 49 C "C3'" . DC A 1 3 ? 12.823 2.456 5.542 1.00 10.00 ? 3 DC A "C3'" 1
ATOM 50 O "O3'" . DC A 1 3 ? 13.579 2.785 6.663 1.00 10.00 ? 3 DC A "O3'" 1
ATOM 51 C "C2'" . DC A 1 3 ? 12.926 3.459 4.487 1.00 10.00 ? 3 DC A "C2'" 1
ATOM 52 C "C1'" . DC A 1 3 ? 13.691 2.795 3.344 1.00 10.00 ? 3 DC A "C1'" 1
ATOM 53 N N1 . DC A 1 3 ? 13.051 3.278 2.119 1.00 10.00 ? 3 DC A N1 1
ATOM 54 C C2 . DC A 1 3 ? 13.752 4.116 1.323 1.00 10.00 ? 3 DC A C2 1
ATOM 55 O O2 . DC A 1 3 ? 14.862 4.387 1.643 1.00 10.00 ? 3 DC A O2 1
ATOM 56 N N3 . DC A 1 3 ? 13.181 4.605 0.240 1.00 10.00 ? 3 DC A N3 1
ATOM 57 C C4 . DC A 1 3 ? 11.969 4.313 -0.069 1.00 10.00 ? 3 DC A C4 1
ATOM 58 N N4 . DC A 1 3 ? 11.478 4.823 -1.132 1.00 10.00 ? 3 DC A N4 1
ATOM 59 C C5 . DC A 1 3 ? 11.227 3.460 0.734 1.00 10.00 ? 3 DC A C5 1
ATOM 60 C C6 . DC A 1 3 ? 11.806 2.976 1.830 1.00 10.00 ? 3 DC A C6 1
ATOM 61 P P . DC A 1 4 ? 13.489 4.085 7.460 1.00 10.00 ? 4 DC A P 1
ATOM 62 O OP1 . DC A 1 4 ? 14.396 3.975 8.597 1.00 10.00 ? 4 DC A OP1 1
ATOM 63 O OP2 . DC A 1 4 ? 12.163 4.481 7.763 1.00 10.00 ? 4 DC A OP2 1
ATOM 64 O "O5'" . DC A 1 4 ? 14.151 5.100 6.455 1.00 10.00 ? 4 DC A "O5'" 1
ATOM 65 C "C5'" . DC A 1 4 ? 15.118 5.893 7.061 1.00 10.00 ? 4 DC A "C5'" 1
ATOM 66 C "C4'" . DC A 1 4 ? 15.677 6.996 6.310 1.00 10.00 ? 4 DC A "C4'" 1
ATOM 67 O "O4'" . DC A 1 4 ? 15.529 6.789 4.918 1.00 10.00 ? 4 DC A "O4'" 1
ATOM 68 C "C3'" . DC A 1 4 ? 15.092 8.316 6.504 1.00 10.00 ? 4 DC A "C3'" 1
ATOM 69 O "O3'" . DC A 1 4 ? 15.536 8.931 7.678 1.00 10.00 ? 4 DC A "O3'" 1
ATOM 70 C "C2'" . DC A 1 4 ? 15.512 9.035 5.279 1.00 10.00 ? 4 DC A "C2'" 1
ATOM 71 C "C1'" . DC A 1 4 ? 15.489 8.006 4.230 1.00 10.00 ? 4 DC A "C1'" 1
ATOM 72 N N1 . DC A 1 4 ? 14.280 7.877 3.472 1.00 10.00 ? 4 DC A N1 1
ATOM 73 C C2 . DC A 1 4 ? 13.999 8.719 2.459 1.00 10.00 ? 4 DC A C2 1
ATOM 74 O O2 . DC A 1 4 ? 14.797 9.555 2.214 1.00 10.00 ? 4 DC A O2 1
ATOM 75 N N3 . DC A 1 4 ? 12.867 8.563 1.815 1.00 10.00 ? 4 DC A N3 1
ATOM 76 C C4 . DC A 1 4 ? 12.037 7.630 2.124 1.00 10.00 ? 4 DC A C4 1
ATOM 77 N N4 . DC A 1 4 ? 10.945 7.494 1.473 1.00 10.00 ? 4 DC A N4 1
ATOM 78 C C5 . DC A 1 4 ? 12.307 6.748 3.171 1.00 10.00 ? 4 DC A C5 1
ATOM 79 C C6 . DC A 1 4 ? 13.439 6.922 3.815 1.00 10.00 ? 4 DC A C6 1
ATOM 80 P P . DG A 1 5 ? 14.299 9.387 8.495 1.00 10.00 ? 5 DG A P 1
ATOM 81 O OP1 . DG A 1 5 ? 14.674 9.696 9.842 1.00 10.00 ? 5 DG A OP1 1
ATOM 82 O OP2 . DG A 1 5 ? 13.262 8.411 8.399 1.00 10.00 ? 5 DG A OP2 1
ATOM 83 O "O5'" . DG A 1 5 ? 13.860 10.633 7.694 1.00 10.00 ? 5 DG A "O5'" 1
ATOM 84 C "C5'" . DG A 1 5 ? 14.814 11.520 7.233 1.00 10.00 ? 5 DG A "C5'" 1
ATOM 85 C "C4'" . DG A 1 5 ? 14.278 12.530 6.310 1.00 10.00 ? 5 DG A "C4'" 1
ATOM 86 O "O4'" . DG A 1 5 ? 13.831 11.839 5.134 1.00 10.00 ? 5 DG A "O4'" 1
ATOM 87 C "C3'" . DG A 1 5 ? 13.150 13.344 6.741 1.00 10.00 ? 5 DG A "C3'" 1
ATOM 88 O "O3'" . DG A 1 5 ? 13.346 14.723 6.875 1.00 10.00 ? 5 DG A "O3'" 1
ATOM 89 C "C2'" . DG A 1 5 ? 12.141 13.170 5.675 1.00 10.00 ? 5 DG A "C2'" 1
ATOM 90 C "C1'" . DG A 1 5 ? 12.897 12.599 4.507 1.00 10.00 ? 5 DG A "C1'" 1
ATOM 91 N N9 . DG A 1 5 ? 11.933 11.867 3.715 1.00 10.00 ? 5 DG A N9 1
ATOM 92 C C8 . DG A 1 5 ? 11.310 10.744 4.071 1.00 10.00 ? 5 DG A C8 1
ATOM 93 N N7 . DG A 1 5 ? 10.484 10.328 3.195 1.00 10.00 ? 5 DG A N7 1
ATOM 94 C C5 . DG A 1 5 ? 10.542 11.257 2.213 1.00 10.00 ? 5 DG A C5 1
ATOM 95 C C6 . DG A 1 5 ? 9.854 11.325 1.005 1.00 10.00 ? 5 DG A C6 1
ATOM 96 O O6 . DG A 1 5 ? 9.060 10.565 0.575 1.00 10.00 ? 5 DG A O6 1
ATOM 97 N N1 . DG A 1 5 ? 10.211 12.418 0.299 1.00 10.00 ? 5 DG A N1 1
ATOM 98 C C2 . DG A 1 5 ? 11.109 13.319 0.688 1.00 10.00 ? 5 DG A C2 1
ATOM 99 N N2 . DG A 1 5 ? 11.308 14.295 -0.139 1.00 10.00 ? 5 DG A N2 1
ATOM 100 N N3 . DG A 1 5 ? 11.757 13.252 1.805 1.00 10.00 ? 5 DG A N3 1
ATOM 101 C C4 . DG A 1 5 ? 11.419 12.201 2.521 1.00 10.00 ? 5 DG A C4 1
ATOM 102 P P . DG A 1 6 ? 12.063 15.524 7.229 1.00 10.00 ? 6 DG A P 1
ATOM 103 O OP1 . DG A 1 6 ? 12.436 16.580 8.137 1.00 10.00 ? 6 DG A OP1 1
ATOM 104 O OP2 . DG A 1 6 ? 11.039 14.638 7.666 1.00 10.00 ? 6 DG A OP2 1
ATOM 105 O "O5'" . DG A 1 6 ? 11.691 16.112 5.831 1.00 10.00 ? 6 DG A "O5'" 1
ATOM 106 C "C5'" . DG A 1 6 ? 12.612 16.880 5.158 1.00 10.00 ? 6 DG A "C5'" 1
ATOM 107 C "C4'" . DG A 1 6 ? 11.991 17.588 4.026 1.00 10.00 ? 6 DG A "C4'" 1
ATOM 108 O "O4'" . DG A 1 6 ? 11.854 16.735 2.898 1.00 10.00 ? 6 DG A "O4'" 1
ATOM 109 C "C3'" . DG A 1 6 ? 10.659 18.156 4.216 1.00 10.00 ? 6 DG A "C3'" 1
ATOM 110 O "O3'" . DG A 1 6 ? 10.761 19.391 4.792 1.00 10.00 ? 6 DG A "O3'" 1
ATOM 111 C "C2'" . DG A 1 6 ? 10.200 18.273 2.788 1.00 10.00 ? 6 DG A "C2'" 1
ATOM 112 C "C1'" . DG A 1 6 ? 10.692 17.038 2.221 1.00 10.00 ? 6 DG A "C1'" 1
ATOM 113 N N9 . DG A 1 6 ? 9.898 15.888 2.528 1.00 10.00 ? 6 DG A N9 1
ATOM 114 C C8 . DG A 1 6 ? 10.072 15.006 3.522 1.00 10.00 ? 6 DG A C8 1
ATOM 115 N N7 . DG A 1 6 ? 9.215 14.087 3.528 1.00 10.00 ? 6 DG A N7 1
ATOM 116 C C5 . DG A 1 6 ? 8.411 14.382 2.478 1.00 10.00 ? 6 DG A C5 1
ATOM 117 C C6 . DG A 1 6 ? 7.293 13.745 1.996 1.00 10.00 ? 6 DG A C6 1
ATOM 118 O O6 . DG A 1 6 ? 6.793 12.754 2.423 1.00 10.00 ? 6 DG A O6 1
ATOM 119 N N1 . DG A 1 6 ? 6.791 14.377 0.910 1.00 10.00 ? 6 DG A N1 1
ATOM 120 C C2 . DG A 1 6 ? 7.290 15.483 0.364 1.00 10.00 ? 6 DG A C2 1
ATOM 121 N N2 . DG A 1 6 ? 6.674 15.997 -0.668 1.00 10.00 ? 6 DG A N2 1
ATOM 122 N N3 . DG A 1 6 ? 8.322 16.089 0.813 1.00 10.00 ? 6 DG A N3 1
ATOM 123 C C4 . DG A 1 6 ? 8.834 15.475 1.860 1.00 10.00 ? 6 DG A C4 1
ATOM 124 P P . DC A 1 7 ? 9.528 20.044 5.430 1.00 10.00 ? 7 DC A P 1
ATOM 125 O OP1 . DC A 1 7 ? 9.843 21.393 5.728 1.00 10.00 ? 7 DC A OP1 1
ATOM 126 O OP2 . DC A 1 7 ? 9.147 19.201 6.535 1.00 10.00 ? 7 DC A OP2 1
ATOM 127 O "O5'" . DC A 1 7 ? 8.446 19.980 4.342 1.00 10.00 ? 7 DC A "O5'" 1
ATOM 128 C "C5'" . DC A 1 7 ? 8.313 21.052 3.462 1.00 10.00 ? 7 DC A "C5'" 1
ATOM 129 C "C4'" . DC A 1 7 ? 7.180 20.851 2.600 1.00 10.00 ? 7 DC A "C4'" 1
ATOM 130 O "O4'" . DC A 1 7 ? 7.169 19.583 2.017 1.00 10.00 ? 7 DC A "O4'" 1
ATOM 131 C "C3'" . DC A 1 7 ? 5.863 20.912 3.287 1.00 10.00 ? 7 DC A "C3'" 1
ATOM 132 O "O3'" . DC A 1 7 ? 5.593 22.180 3.669 1.00 10.00 ? 7 DC A "O3'" 1
ATOM 133 C "C2'" . DC A 1 7 ? 5.033 20.368 2.177 1.00 10.00 ? 7 DC A "C2'" 1
ATOM 134 C "C1'" . DC A 1 7 ? 5.852 19.244 1.769 1.00 10.00 ? 7 DC A "C1'" 1
ATOM 135 N N1 . DC A 1 7 ? 5.674 18.018 2.524 1.00 10.00 ? 7 DC A N1 1
ATOM 136 C C2 . DC A 1 7 ? 4.798 17.137 2.002 1.00 10.00 ? 7 DC A C2 1
ATOM 137 O O2 . DC A 1 7 ? 4.231 17.474 0.990 1.00 10.00 ? 7 DC A O2 1
ATOM 138 N N3 . DC A 1 7 ? 4.622 16.000 2.635 1.00 10.00 ? 7 DC A N3 1
ATOM 139 C C4 . DC A 1 7 ? 5.292 15.709 3.722 1.00 10.00 ? 7 DC A C4 1
ATOM 140 N N4 . DC A 1 7 ? 5.086 14.588 4.305 1.00 10.00 ? 7 DC A N4 1
ATOM 141 C C5 . DC A 1 7 ? 6.207 16.596 4.261 1.00 10.00 ? 7 DC A C5 1
ATOM 142 C C6 . DC A 1 7 ? 6.351 17.732 3.620 1.00 10.00 ? 7 DC A C6 1
ATOM 143 P P . DC A 1 8 ? 4.347 22.575 4.472 1.00 10.00 ? 8 DC A P 1
ATOM 144 O OP1 . DC A 1 8 ? 4.112 23.970 4.307 1.00 10.00 ? 8 DC A OP1 1
ATOM 145 O OP2 . DC A 1 8 ? 4.415 22.065 5.815 1.00 10.00 ? 8 DC A OP2 1
ATOM 146 O "O5'" . DC A 1 8 ? 3.213 21.852 3.695 1.00 10.00 ? 8 DC A "O5'" 1
ATOM 147 C "C5'" . DC A 1 8 ? 2.361 22.594 2.877 1.00 10.00 ? 8 DC A "C5'" 1
ATOM 148 C "C4'" . DC A 1 8 ? 1.171 21.841 2.505 1.00 10.00 ? 8 DC A "C4'" 1
ATOM 149 O "O4'" . DC A 1 8 ? 1.529 20.562 2.049 1.00 10.00 ? 8 DC A "O4'" 1
ATOM 150 C "C3'" . DC A 1 8 ? 0.200 21.601 3.606 1.00 10.00 ? 8 DC A "C3'" 1
ATOM 151 O "O3'" . DC A 1 8 ? -0.548 22.726 3.907 1.00 10.00 ? 8 DC A "O3'" 1
ATOM 152 C "C2'" . DC A 1 8 ? -0.529 20.422 3.046 1.00 10.00 ? 8 DC A "C2'" 1
ATOM 153 C "C1'" . DC A 1 8 ? 0.569 19.631 2.431 1.00 10.00 ? 8 DC A "C1'" 1
ATOM 154 N N1 . DC A 1 8 ? 1.202 18.668 3.311 1.00 10.00 ? 8 DC A N1 1
ATOM 155 C C2 . DC A 1 8 ? 0.700 17.418 3.375 1.00 10.00 ? 8 DC A C2 1
ATOM 156 O O2 . DC A 1 8 ? -0.254 17.140 2.693 1.00 10.00 ? 8 DC A O2 1
ATOM 157 N N3 . DC A 1 8 ? 1.281 16.555 4.181 1.00 10.00 ? 8 DC A N3 1
ATOM 158 C C4 . DC A 1 8 ? 2.296 16.876 4.919 1.00 10.00 ? 8 DC A C4 1
ATOM 159 N N4 . DC A 1 8 ? 2.815 16.002 5.702 1.00 10.00 ? 8 DC A N4 1
ATOM 160 C C5 . DC A 1 8 ? 2.815 18.152 4.875 1.00 10.00 ? 8 DC A C5 1
ATOM 161 C C6 . DC A 1 8 ? 2.234 19.000 4.052 1.00 10.00 ? 8 DC A C6 1
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