data_1VTB
#
_entry.id 1VTB
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.383
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1VTB pdb_00001vtb 10.2210/pdb1vtb/pdb
NDB ADH034 ? ?
RCSB RCSB003035 ? ?
WWPDB D_1000003035 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2011-07-13
2 'Structure model' 1 1 2023-12-27
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
3 2 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_database_2.pdbx_DOI'
2 2 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1VTB
_pdbx_database_status.recvd_initial_deposition_date 1991-05-28
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Jain, S.C.' 1
'Zon, G.' 2
'Sundaralingam, M.' 3
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary
;The Hexagonal Crystal Structure of the A-DNA Octamer d(GTGTACAC) and Its Comparison with the Tetragonal Structure Correlated Variations in Helical Parameters
;
Biochemistry 30 3567 3576 1991 BICHAW US 0006-2960 0033 ? ? ?
1 'Effect of Crystal Packing Environment on Conformation of the DNA Duplex' J.Biol.Chem. 264 12780 12784 1989 JBCHA3 US
0021-9258 0071 ? ? ?
2 'Base Only Binding of Spermine in the Deep Groove of the A-DNA Octamer d(GTGTACAC)' Biochemistry 28 2360 2364 1989
BICHAW US 0006-2960 0033 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Jain, S.C.' 1 ?
primary 'Zon, G.' 2 ?
primary 'Sundaralingam, M.' 3 ?
1 'Jain, S.' 4 ?
1 'Sundaralingam, M.' 5 ?
2 'Jain, S.' 6 ?
2 'Zon, G.' 7 ?
2 'Sundaralingam, M.' 8 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3')
;
2426.617 1 ? ? ? ?
2 water nat water 18.015 50 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DG)(DT)(DG)(DT)(DA)(DC)(DA)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GTGTACAC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DT n
1 3 DG n
1 4 DT n
1 5 DA n
1 6 DC n
1 7 DA n
1 8 DC n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 DT 2 2 2 DT T A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 DT 4 4 4 DT T A . n
A 1 5 DA 5 5 5 DA A A . n
A 1 6 DC 6 6 6 DC C A . n
A 1 7 DA 7 7 7 DA A A . n
A 1 8 DC 8 8 8 DC C A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 9 9 HOH HOH A .
B 2 HOH 2 10 10 HOH HOH A .
B 2 HOH 3 11 11 HOH HOH A .
B 2 HOH 4 12 12 HOH HOH A .
B 2 HOH 5 13 13 HOH HOH A .
B 2 HOH 6 14 14 HOH HOH A .
B 2 HOH 7 15 15 HOH HOH A .
B 2 HOH 8 16 16 HOH HOH A .
B 2 HOH 9 17 17 HOH HOH A .
B 2 HOH 10 18 18 HOH HOH A .
B 2 HOH 11 19 19 HOH HOH A .
B 2 HOH 12 20 20 HOH HOH A .
B 2 HOH 13 21 21 HOH HOH A .
B 2 HOH 14 22 22 HOH HOH A .
B 2 HOH 15 23 23 HOH HOH A .
B 2 HOH 16 24 24 HOH HOH A .
B 2 HOH 17 25 25 HOH HOH A .
B 2 HOH 18 26 26 HOH HOH A .
B 2 HOH 19 27 27 HOH HOH A .
B 2 HOH 20 28 28 HOH HOH A .
B 2 HOH 21 29 29 HOH HOH A .
B 2 HOH 22 30 30 HOH HOH A .
B 2 HOH 23 31 31 HOH HOH A .
B 2 HOH 24 32 32 HOH HOH A .
B 2 HOH 25 33 33 HOH HOH A .
B 2 HOH 26 34 34 HOH HOH A .
B 2 HOH 27 35 35 HOH HOH A .
B 2 HOH 28 36 36 HOH HOH A .
B 2 HOH 29 37 37 HOH HOH A .
B 2 HOH 30 38 38 HOH HOH A .
B 2 HOH 31 39 39 HOH HOH A .
B 2 HOH 32 40 40 HOH HOH A .
B 2 HOH 33 41 41 HOH HOH A .
B 2 HOH 34 42 42 HOH HOH A .
B 2 HOH 35 43 43 HOH HOH A .
B 2 HOH 36 44 44 HOH HOH A .
B 2 HOH 37 45 45 HOH HOH A .
B 2 HOH 38 46 46 HOH HOH A .
B 2 HOH 39 47 47 HOH HOH A .
B 2 HOH 40 48 48 HOH HOH A .
B 2 HOH 41 49 49 HOH HOH A .
B 2 HOH 42 50 50 HOH HOH A .
B 2 HOH 43 51 51 HOH HOH A .
B 2 HOH 44 52 52 HOH HOH A .
B 2 HOH 45 53 53 HOH HOH A .
B 2 HOH 46 54 54 HOH HOH A .
B 2 HOH 47 55 55 HOH HOH A .
B 2 HOH 48 56 56 HOH HOH A .
B 2 HOH 49 57 57 HOH HOH A .
B 2 HOH 50 58 58 HOH HOH A .
#
_software.name NUCLSQ
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 1VTB
_cell.length_a 32.400
_cell.length_b 32.400
_cell.length_c 79.250
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 1VTB
_symmetry.space_group_name_H-M 'P 61 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 178
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1VTB
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 50.29
_exptl_crystal.density_Matthews 2.47
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp 278.00
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, temperature 278.00K'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER 1 2 3
1 2 1 MPD 4 5 6
1 3 1 MGCL2 7 8 9
1 4 1 SPERMINE 10 11 12
1 5 2 WATER 13 14 15
1 6 2 MPD 16 17 18
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'OSCILLATION CAMERA'
_diffrn_detector.type ARNDT-WONACOTT
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1VTB
_reflns.observed_criterion_sigma_I 1.500
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high 2.000
_reflns.number_obs 1683
_reflns.number_all 8156
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
#
_refine.entry_id 1VTB
_refine.ls_number_reflns_obs 1561
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I 1.500
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 2.000
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1270000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_phase_error ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 161
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 50
_refine_hist.number_atoms_total 211
_refine_hist.d_res_high 2.000
_refine_hist.d_res_low .
#
_database_PDB_matrix.entry_id 1VTB
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1VTB
_struct.title
;THE HEXAGONAL CRYSTAL STRUCTURE OF THE A-DNA OCTAMER D(GTGTACAC) AND ITS COMPARISON WITH THE TETRAGONAL STRUCTURE CORRELATED VARIATIONS IN HELICAL PARAMETERS
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1VTB
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1VTB
_struct_ref.pdbx_db_accession 1VTB
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1VTB
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1VTB
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 740 ?
1 MORE -5 ?
1 'SSA (A^2)' 3070 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 13.2083333333
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A DT 2 A DA 7 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A DT 2 A DA 7 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 4 A DA 5 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 4 A DA 5 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 5 A DT 4 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 5 A DT 4 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 2 N3 ? ? A DA 7 A DT 2 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 2 O4 ? ? A DA 7 A DT 2 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 P A DG 3 ? ? "O5'" A DG 3 ? ? 1.711 1.593 0.118 0.010 N
2 1 "O3'" A DG 3 ? ? P A DT 4 ? ? 1.528 1.607 -0.079 0.012 Y
3 1 P A DC 8 ? ? "O5'" A DC 8 ? ? 1.674 1.593 0.081 0.010 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 OP1 A DT 2 ? ? P A DT 2 ? ? OP2 A DT 2 ? ? 110.06 119.60 -9.54 1.50 N
2 1 "O5'" A DT 2 ? ? P A DT 2 ? ? OP2 A DT 2 ? ? 119.77 110.70 9.07 1.20 N
3 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.53 108.30 2.23 0.30 N
4 1 C2 A DT 2 ? ? N3 A DT 2 ? ? C4 A DT 2 ? ? 122.06 127.20 -5.14 0.60 N
5 1 N3 A DT 2 ? ? C4 A DT 2 ? ? C5 A DT 2 ? ? 119.78 115.20 4.58 0.60 N
6 1 "O3'" A DT 2 ? ? P A DG 3 ? ? OP2 A DG 3 ? ? 122.74 110.50 12.24 1.10 Y
7 1 "O5'" A DG 3 ? ? P A DG 3 ? ? OP2 A DG 3 ? ? 98.67 105.70 -7.03 0.90 N
8 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 122.25 127.20 -4.95 0.60 N
9 1 N3 A DT 4 ? ? C4 A DT 4 ? ? C5 A DT 4 ? ? 119.33 115.20 4.13 0.60 N
10 1 OP1 A DA 5 ? ? P A DA 5 ? ? OP2 A DA 5 ? ? 108.70 119.60 -10.90 1.50 N
11 1 C6 A DA 5 ? ? N1 A DA 5 ? ? C2 A DA 5 ? ? 123.70 118.60 5.10 0.60 N
12 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 123.83 129.30 -5.47 0.50 N
13 1 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DA 7 ? ? 129.29 119.70 9.59 1.20 Y
14 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 112.37 108.30 4.07 0.30 N
15 1 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 123.50 118.60 4.90 0.60 N
16 1 OP1 A DC 8 ? ? P A DC 8 ? ? OP2 A DC 8 ? ? 128.77 119.60 9.17 1.50 N
17 1 "O5'" A DC 8 ? ? "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? 103.61 109.40 -5.79 0.80 N
18 1 P A DC 8 ? ? "O5'" A DC 8 ? ? "C5'" A DC 8 ? ? 109.33 120.90 -11.57 1.60 N
19 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.60 108.30 2.30 0.30 N
20 1 N3 A DC 8 ? ? C4 A DC 8 ? ? C5 A DC 8 ? ? 118.83 121.90 -3.07 0.40 N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
HOH O O N N 144
HOH H1 H N N 145
HOH H2 H N N 146
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
#
_ndb_struct_conf_na.entry_id 1VTB
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 12_555 -0.455 -0.193 -0.004 -10.542 -17.959 -1.575 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A DT 2 1_555 A DA 7 12_555 0.115 -0.185 -0.072 -20.084 -9.550 -4.146 2 A_DT2:DA7_A A 2 ? A 7 ? 20 1
1 A DG 3 1_555 A DC 6 12_555 -0.184 -0.137 -0.058 -10.094 -14.041 0.833 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1
1 A DT 4 1_555 A DA 5 12_555 0.068 -0.205 0.193 -1.235 -11.918 -0.008 4 A_DT4:DA5_A A 4 ? A 5 ? 20 1
1 A DA 5 1_555 A DT 4 12_555 -0.068 -0.205 0.193 1.235 -11.918 -0.008 5 A_DA5:DT4_A A 5 ? A 4 ? 20 1
1 A DC 6 1_555 A DG 3 12_555 0.184 -0.137 -0.058 10.094 -14.041 0.833 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1
1 A DA 7 1_555 A DT 2 12_555 -0.115 -0.185 -0.072 20.085 -9.550 -4.146 7 A_DA7:DT2_A A 7 ? A 2 ? 20 1
1 A DC 8 1_555 A DG 1 12_555 0.455 -0.193 -0.004 10.542 -17.959 -1.575 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 12_555 A DT 2 1_555 A DA 7 12_555 -0.652 -1.327 3.582 3.258 -1.741 37.786 -1.797 1.458 3.571 -2.681 -5.017
37.959 1 AA_DG1DT2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A DT 2 1_555 A DA 7 12_555 A DG 3 1_555 A DC 6 12_555 0.627 -1.066 3.198 -1.059 14.508 27.777 -4.447 -1.343 2.341 27.926 2.039
31.289 2 AA_DT2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DG 3 1_555 A DC 6 12_555 A DT 4 1_555 A DA 5 12_555 -0.564 -1.147 3.108 -3.578 6.466 32.964 -2.947 0.434 2.882 11.220 6.208
33.760 3 AA_DG3DT4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A DT 4 1_555 A DA 5 12_555 A DA 5 1_555 A DT 4 12_555 0.000 -1.013 3.198 0.000 9.763 29.620 -3.620 0.000 2.733 18.476 0.000
31.154 4 AA_DT4DA5:DT4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DA 5 1_555 A DT 4 12_555 A DC 6 1_555 A DG 3 12_555 0.564 -1.147 3.108 3.578 6.466 32.964 -2.947 -0.434 2.882 11.220 -6.208
33.760 5 AA_DA5DC6:DG3DT4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A DC 6 1_555 A DG 3 12_555 A DA 7 1_555 A DT 2 12_555 -0.627 -1.066 3.198 1.059 14.508 27.777 -4.447 1.343 2.341 27.926 -2.039
31.289 6 AA_DC6DA7:DT2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A DA 7 1_555 A DT 2 12_555 A DC 8 1_555 A DG 1 12_555 0.652 -1.327 3.582 -3.258 -1.741 37.786 -1.797 -1.458 3.571 -2.681 5.017
37.959 7 AA_DA7DC8:DG1DT2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_atom_sites.entry_id 1VTB
_atom_sites.fract_transf_matrix[1][1] 0.030864
_atom_sites.fract_transf_matrix[1][2] 0.017819
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.035639
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.012618
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 15.435 2.132 10.009 1.00 30.58 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 14.201 1.627 10.612 1.00 29.83 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 14.356 1.852 12.101 1.00 26.93 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 15.511 1.170 12.585 1.00 24.99 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 14.552 3.308 12.498 1.00 20.24 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 13.308 4.026 12.593 1.00 23.39 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 15.265 3.207 13.845 1.00 21.26 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 16.103 1.975 13.639 1.00 22.36 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 17.465 2.304 13.171 1.00 22.50 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 18.022 1.838 12.006 1.00 20.80 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 19.267 2.214 11.840 1.00 23.58 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 19.536 2.966 12.981 1.00 19.40 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 20.707 3.665 13.377 1.00 23.54 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 21.805 3.721 12.807 1.00 22.84 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 20.566 4.285 14.582 1.00 21.33 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 19.438 4.257 15.343 1.00 19.18 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 19.493 4.947 16.468 1.00 20.89 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 18.308 3.639 15.002 1.00 20.44 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 18.427 3.033 13.797 1.00 16.20 ? 1 DG A C4 1
ATOM 20 P P . DT A 1 2 ? 13.252 5.651 12.284 1.00 28.20 ? 2 DT A P 1
ATOM 21 O OP1 . DT A 1 2 ? 11.742 5.971 12.284 1.00 32.70 ? 2 DT A OP1 1
ATOM 22 O OP2 . DT A 1 2 ? 13.793 5.780 10.929 1.00 22.65 ? 2 DT A OP2 1
ATOM 23 O "O5'" . DT A 1 2 ? 13.989 6.316 13.473 1.00 27.10 ? 2 DT A "O5'" 1
ATOM 24 C "C5'" . DT A 1 2 ? 13.478 6.437 14.820 1.00 27.79 ? 2 DT A "C5'" 1
ATOM 25 C "C4'" . DT A 1 2 ? 14.499 7.256 15.573 1.00 29.42 ? 2 DT A "C4'" 1
ATOM 26 O "O4'" . DT A 1 2 ? 15.725 6.552 15.684 1.00 29.98 ? 2 DT A "O4'" 1
ATOM 27 C "C3'" . DT A 1 2 ? 14.875 8.575 14.899 1.00 30.69 ? 2 DT A "C3'" 1
ATOM 28 O "O3'" . DT A 1 2 ? 13.895 9.582 15.137 1.00 36.37 ? 2 DT A "O3'" 1
ATOM 29 C "C2'" . DT A 1 2 ? 16.226 8.878 15.541 1.00 24.94 ? 2 DT A "C2'" 1
ATOM 30 C "C1'" . DT A 1 2 ? 16.822 7.492 15.660 1.00 23.54 ? 2 DT A "C1'" 1
ATOM 31 N N1 . DT A 1 2 ? 17.703 7.228 14.511 1.00 24.81 ? 2 DT A N1 1
ATOM 32 C C2 . DT A 1 2 ? 19.011 7.719 14.598 1.00 24.46 ? 2 DT A C2 1
ATOM 33 O O2 . DT A 1 2 ? 19.367 8.308 15.612 1.00 23.61 ? 2 DT A O2 1
ATOM 34 N N3 . DT A 1 2 ? 19.856 7.478 13.544 1.00 20.20 ? 2 DT A N3 1
ATOM 35 C C4 . DT A 1 2 ? 19.450 6.818 12.434 1.00 23.45 ? 2 DT A C4 1
ATOM 36 O O4 . DT A 1 2 ? 20.292 6.622 11.507 1.00 21.65 ? 2 DT A O4 1
ATOM 37 C C5 . DT A 1 2 ? 18.107 6.333 12.347 1.00 24.34 ? 2 DT A C5 1
ATOM 38 C C7 . DT A 1 2 ? 17.661 5.606 11.111 1.00 24.32 ? 2 DT A C7 1
ATOM 39 C C6 . DT A 1 2 ? 17.292 6.566 13.393 1.00 22.49 ? 2 DT A C6 1
ATOM 40 P P . DG A 1 3 ? 13.728 10.786 14.122 1.00 36.37 ? 3 DG A P 1
ATOM 41 O OP1 . DG A 1 3 ? 12.694 11.527 14.986 1.00 38.23 ? 3 DG A OP1 1
ATOM 42 O OP2 . DG A 1 3 ? 13.726 10.609 12.720 1.00 29.47 ? 3 DG A OP2 1
ATOM 43 O "O5'" . DG A 1 3 ? 15.170 11.695 14.265 1.00 37.92 ? 3 DG A "O5'" 1
ATOM 44 C "C5'" . DG A 1 3 ? 15.409 12.267 15.565 1.00 31.96 ? 3 DG A "C5'" 1
ATOM 45 C "C4'" . DG A 1 3 ? 16.807 12.860 15.573 1.00 26.80 ? 3 DG A "C4'" 1
ATOM 46 O "O4'" . DG A 1 3 ? 17.741 11.804 15.438 1.00 25.93 ? 3 DG A "O4'" 1
ATOM 47 C "C3'" . DG A 1 3 ? 17.183 13.830 14.455 1.00 25.45 ? 3 DG A "C3'" 1
ATOM 48 O "O3'" . DG A 1 3 ? 16.714 15.149 14.701 1.00 32.22 ? 3 DG A "O3'" 1
ATOM 49 C "C2'" . DG A 1 3 ? 18.713 13.774 14.455 1.00 26.40 ? 3 DG A "C2'" 1
ATOM 50 C "C1'" . DG A 1 3 ? 18.901 12.282 14.764 1.00 25.98 ? 3 DG A "C1'" 1
ATOM 51 N N9 . DG A 1 3 ? 19.054 11.471 13.536 1.00 20.81 ? 3 DG A N9 1
ATOM 52 C C8 . DG A 1 3 ? 18.184 10.721 12.815 1.00 19.02 ? 3 DG A C8 1
ATOM 53 N N7 . DG A 1 3 ? 18.714 10.124 11.761 1.00 18.70 ? 3 DG A N7 1
ATOM 54 C C5 . DG A 1 3 ? 20.064 10.514 11.824 1.00 22.24 ? 3 DG A C5 1
ATOM 55 C C6 . DG A 1 3 ? 21.193 10.191 11.040 1.00 23.22 ? 3 DG A C6 1
ATOM 56 O O6 . DG A 1 3 ? 21.251 9.490 10.017 1.00 20.04 ? 3 DG A O6 1
ATOM 57 N N1 . DG A 1 3 ? 22.348 10.811 11.444 1.00 19.41 ? 3 DG A N1 1
ATOM 58 C C2 . DG A 1 3 ? 22.439 11.602 12.545 1.00 22.11 ? 3 DG A C2 1
ATOM 59 N N2 . DG A 1 3 ? 23.675 12.071 12.831 1.00 20.46 ? 3 DG A N2 1
ATOM 60 N N3 . DG A 1 3 ? 21.421 11.911 13.346 1.00 20.88 ? 3 DG A N3 1
ATOM 61 C C4 . DG A 1 3 ? 20.282 11.336 12.910 1.00 21.91 ? 3 DG A C4 1
ATOM 62 P P . DT A 1 4 ? 16.783 16.336 13.742 1.00 29.22 ? 4 DT A P 1
ATOM 63 O OP1 . DT A 1 4 ? 16.142 17.515 14.439 1.00 33.80 ? 4 DT A OP1 1
ATOM 64 O OP2 . DT A 1 4 ? 16.190 16.055 12.395 1.00 28.46 ? 4 DT A OP2 1
ATOM 65 O "O5'" . DT A 1 4 ? 18.327 16.653 13.465 1.00 28.50 ? 4 DT A "O5'" 1
ATOM 66 C "C5'" . DT A 1 4 ? 19.181 17.329 14.400 1.00 24.06 ? 4 DT A "C5'" 1
ATOM 67 C "C4'" . DT A 1 4 ? 20.555 17.442 13.758 1.00 30.31 ? 4 DT A "C4'" 1
ATOM 68 O "O4'" . DT A 1 4 ? 21.130 16.171 13.512 1.00 24.88 ? 4 DT A "O4'" 1
ATOM 69 C "C3'" . DT A 1 4 ? 20.579 18.107 12.379 1.00 26.24 ? 4 DT A "C3'" 1
ATOM 70 O "O3'" . DT A 1 4 ? 20.431 19.540 12.466 1.00 30.67 ? 4 DT A "O3'" 1
ATOM 71 C "C2'" . DT A 1 4 ? 21.922 17.649 11.832 1.00 19.06 ? 4 DT A "C2'" 1
ATOM 72 C "C1'" . DT A 1 4 ? 22.004 16.221 12.355 1.00 25.55 ? 4 DT A "C1'" 1
ATOM 73 N N1 . DT A 1 4 ? 21.543 15.202 11.396 1.00 21.10 ? 4 DT A N1 1
ATOM 74 C C2 . DT A 1 4 ? 22.447 14.636 10.509 1.00 25.06 ? 4 DT A C2 1
ATOM 75 O O2 . DT A 1 4 ? 23.608 15.043 10.501 1.00 24.67 ? 4 DT A O2 1
ATOM 76 N N3 . DT A 1 4 ? 21.979 13.690 9.645 1.00 14.21 ? 4 DT A N3 1
ATOM 77 C C4 . DT A 1 4 ? 20.665 13.300 9.629 1.00 19.63 ? 4 DT A C4 1
ATOM 78 O O4 . DT A 1 4 ? 20.336 12.411 8.789 1.00 18.99 ? 4 DT A O4 1
ATOM 79 C C5 . DT A 1 4 ? 19.753 13.898 10.532 1.00 25.24 ? 4 DT A C5 1
ATOM 80 C C7 . DT A 1 4 ? 18.293 13.513 10.580 1.00 20.65 ? 4 DT A C7 1
ATOM 81 C C6 . DT A 1 4 ? 20.232 14.812 11.388 1.00 21.16 ? 4 DT A C6 1
ATOM 82 P P . DA A 1 5 ? 19.981 20.259 11.174 1.00 28.58 ? 5 DA A P 1
ATOM 83 O OP1 . DA A 1 5 ? 19.636 21.698 11.539 1.00 31.09 ? 5 DA A OP1 1
ATOM 84 O OP2 . DA A 1 5 ? 18.771 19.616 10.548 1.00 25.58 ? 5 DA A OP2 1
ATOM 85 O "O5'" . DA A 1 5 ? 21.126 20.346 10.049 1.00 22.54 ? 5 DA A "O5'" 1
ATOM 86 C "C5'" . DA A 1 5 ? 22.450 20.882 10.366 1.00 18.61 ? 5 DA A "C5'" 1
ATOM 87 C "C4'" . DA A 1 5 ? 23.430 20.436 9.304 1.00 23.30 ? 5 DA A "C4'" 1
ATOM 88 O "O4'" . DA A 1 5 ? 23.611 19.021 9.391 1.00 17.93 ? 5 DA A "O4'" 1
ATOM 89 C "C3'" . DA A 1 5 ? 23.019 20.643 7.854 1.00 23.42 ? 5 DA A "C3'" 1
ATOM 90 O "O3'" . DA A 1 5 ? 23.239 21.973 7.394 1.00 22.95 ? 5 DA A "O3'" 1
ATOM 91 C "C2'" . DA A 1 5 ? 23.889 19.630 7.109 1.00 21.87 ? 5 DA A "C2'" 1
ATOM 92 C "C1'" . DA A 1 5 ? 23.931 18.485 8.091 1.00 20.92 ? 5 DA A "C1'" 1
ATOM 93 N N9 . DA A 1 5 ? 22.918 17.472 7.711 1.00 18.72 ? 5 DA A N9 1
ATOM 94 C C8 . DA A 1 5 ? 21.630 17.385 8.210 1.00 19.55 ? 5 DA A C8 1
ATOM 95 N N7 . DA A 1 5 ? 20.948 16.378 7.711 1.00 16.28 ? 5 DA A N7 1
ATOM 96 C C5 . DA A 1 5 ? 21.876 15.780 6.839 1.00 18.71 ? 5 DA A C5 1
ATOM 97 C C6 . DA A 1 5 ? 21.758 14.672 5.968 1.00 17.25 ? 5 DA A C6 1
ATOM 98 N N6 . DA A 1 5 ? 20.653 13.948 5.849 1.00 19.43 ? 5 DA A N6 1
ATOM 99 N N1 . DA A 1 5 ? 22.857 14.408 5.231 1.00 18.86 ? 5 DA A N1 1
ATOM 100 C C2 . DA A 1 5 ? 24.008 15.135 5.302 1.00 24.00 ? 5 DA A C2 1
ATOM 101 N N3 . DA A 1 5 ? 24.177 16.173 6.110 1.00 20.27 ? 5 DA A N3 1
ATOM 102 C C4 . DA A 1 5 ? 23.072 16.443 6.831 1.00 17.80 ? 5 DA A C4 1
ATOM 103 P P . DC A 1 6 ? 22.249 22.638 6.253 1.00 27.71 ? 6 DC A P 1
ATOM 104 O OP1 . DC A 1 6 ? 22.657 24.097 6.253 1.00 23.44 ? 6 DC A OP1 1
ATOM 105 O OP2 . DC A 1 6 ? 20.867 22.400 6.697 1.00 28.72 ? 6 DC A OP2 1
ATOM 106 O "O5'" . DC A 1 6 ? 22.727 21.883 4.985 1.00 25.05 ? 6 DC A "O5'" 1
ATOM 107 C "C5'" . DC A 1 6 ? 24.025 22.178 4.430 1.00 20.89 ? 6 DC A "C5'" 1
ATOM 108 C "C4'" . DC A 1 6 ? 24.292 21.137 3.368 1.00 22.51 ? 6 DC A "C4'" 1
ATOM 109 O "O4'" . DC A 1 6 ? 24.200 19.832 3.923 1.00 21.77 ? 6 DC A "O4'" 1
ATOM 110 C "C3'" . DC A 1 6 ? 23.300 21.148 2.195 1.00 22.34 ? 6 DC A "C3'" 1
ATOM 111 O "O3'" . DC A 1 6 ? 23.532 22.268 1.355 1.00 26.54 ? 6 DC A "O3'" 1
ATOM 112 C "C2'" . DC A 1 6 ? 23.608 19.768 1.609 1.00 15.51 ? 6 DC A "C2'" 1
ATOM 113 C "C1'" . DC A 1 6 ? 23.795 18.946 2.877 1.00 20.21 ? 6 DC A "C1'" 1
ATOM 114 N N1 . DC A 1 6 ? 22.533 18.309 3.289 1.00 22.87 ? 6 DC A N1 1
ATOM 115 C C2 . DC A 1 6 ? 22.309 17.029 2.774 1.00 16.76 ? 6 DC A C2 1
ATOM 116 O O2 . DC A 1 6 ? 23.121 16.538 1.989 1.00 20.80 ? 6 DC A O2 1
ATOM 117 N N3 . DC A 1 6 ? 21.138 16.409 3.115 1.00 21.53 ? 6 DC A N3 1
ATOM 118 C C4 . DC A 1 6 ? 20.232 16.990 3.955 1.00 24.31 ? 6 DC A C4 1
ATOM 119 N N4 . DC A 1 6 ? 19.110 16.336 4.264 1.00 16.50 ? 6 DC A N4 1
ATOM 120 C C5 . DC A 1 6 ? 20.496 18.295 4.486 1.00 18.81 ? 6 DC A C5 1
ATOM 121 C C6 . DC A 1 6 ? 21.635 18.881 4.121 1.00 17.60 ? 6 DC A C6 1
ATOM 122 P P . DA A 1 7 ? 22.677 22.795 0.111 1.00 28.97 ? 7 DA A P 1
ATOM 123 O OP1 . DA A 1 7 ? 23.257 24.080 -0.230 1.00 28.25 ? 7 DA A OP1 1
ATOM 124 O OP2 . DA A 1 7 ? 21.300 22.818 0.793 1.00 25.00 ? 7 DA A OP2 1
ATOM 125 O "O5'" . DA A 1 7 ? 22.691 21.732 -1.046 1.00 21.20 ? 7 DA A "O5'" 1
ATOM 126 C "C5'" . DA A 1 7 ? 23.939 21.339 -1.648 1.00 27.11 ? 7 DA A "C5'" 1
ATOM 127 C "C4'" . DA A 1 7 ? 23.579 20.267 -2.639 1.00 23.11 ? 7 DA A "C4'" 1
ATOM 128 O "O4'" . DA A 1 7 ? 22.986 19.156 -1.997 1.00 24.60 ? 7 DA A "O4'" 1
ATOM 129 C "C3'" . DA A 1 7 ? 22.563 20.719 -3.701 1.00 32.13 ? 7 DA A "C3'" 1
ATOM 130 O "O3'" . DA A 1 7 ? 22.980 20.222 -4.969 1.00 30.23 ? 7 DA A "O3'" 1
ATOM 131 C "C2'" . DA A 1 7 ? 21.237 20.166 -3.210 1.00 27.76 ? 7 DA A "C2'" 1
ATOM 132 C "C1'" . DA A 1 7 ? 21.684 18.870 -2.528 1.00 23.96 ? 7 DA A "C1'" 1
ATOM 133 N N9 . DA A 1 7 ? 20.718 18.483 -1.474 1.00 20.05 ? 7 DA A N9 1
ATOM 134 C C8 . DA A 1 7 ? 20.325 19.215 -0.396 1.00 20.91 ? 7 DA A C8 1
ATOM 135 N N7 . DA A 1 7 ? 19.469 18.620 0.380 1.00 21.13 ? 7 DA A N7 1
ATOM 136 C C5 . DA A 1 7 ? 19.297 17.380 -0.230 1.00 19.72 ? 7 DA A C5 1
ATOM 137 C C6 . DA A 1 7 ? 18.500 16.280 0.159 1.00 21.69 ? 7 DA A C6 1
ATOM 138 N N6 . DA A 1 7 ? 17.710 16.336 1.228 1.00 20.56 ? 7 DA A N6 1
ATOM 139 N N1 . DA A 1 7 ? 18.607 15.180 -0.642 1.00 21.50 ? 7 DA A N1 1
ATOM 140 C C2 . DA A 1 7 ? 19.414 15.186 -1.736 1.00 21.38 ? 7 DA A C2 1
ATOM 141 N N3 . DA A 1 7 ? 20.182 16.196 -2.148 1.00 21.29 ? 7 DA A N3 1
ATOM 142 C C4 . DA A 1 7 ? 20.077 17.265 -1.347 1.00 21.39 ? 7 DA A C4 1
ATOM 143 P P . DC A 1 8 ? 22.220 20.652 -6.388 1.00 39.42 ? 8 DC A P 1
ATOM 144 O OP1 . DC A 1 8 ? 23.164 20.346 -7.378 1.00 33.19 ? 8 DC A OP1 1
ATOM 145 O OP2 . DC A 1 8 ? 21.570 21.968 -6.086 1.00 37.13 ? 8 DC A OP2 1
ATOM 146 O "O5'" . DC A 1 8 ? 20.917 19.602 -6.411 1.00 29.44 ? 8 DC A "O5'" 1
ATOM 147 C "C5'" . DC A 1 8 ? 21.366 18.281 -6.863 1.00 25.85 ? 8 DC A "C5'" 1
ATOM 148 C "C4'" . DC A 1 8 ? 20.140 17.402 -6.673 1.00 31.16 ? 8 DC A "C4'" 1
ATOM 149 O "O4'" . DC A 1 8 ? 19.772 17.377 -5.318 1.00 28.88 ? 8 DC A "O4'" 1
ATOM 150 C "C3'" . DC A 1 8 ? 18.891 17.888 -7.410 1.00 27.09 ? 8 DC A "C3'" 1
ATOM 151 O "O3'" . DC A 1 8 ? 18.836 17.343 -8.725 1.00 38.48 ? 8 DC A "O3'" 1
ATOM 152 C "C2'" . DC A 1 8 ? 17.734 17.416 -6.522 1.00 37.16 ? 8 DC A "C2'" 1
ATOM 153 C "C1'" . DC A 1 8 ? 18.384 16.993 -5.223 1.00 26.19 ? 8 DC A "C1'" 1
ATOM 154 N N1 . DC A 1 8 ? 17.750 17.624 -4.050 1.00 23.46 ? 8 DC A N1 1
ATOM 155 C C2 . DC A 1 8 ? 16.812 16.847 -3.392 1.00 21.83 ? 8 DC A C2 1
ATOM 156 O O2 . DC A 1 8 ? 16.518 15.741 -3.836 1.00 22.89 ? 8 DC A O2 1
ATOM 157 N N3 . DC A 1 8 ? 16.176 17.343 -2.298 1.00 24.34 ? 8 DC A N3 1
ATOM 158 C C4 . DC A 1 8 ? 16.454 18.595 -1.831 1.00 22.88 ? 8 DC A C4 1
ATOM 159 N N4 . DC A 1 8 ? 15.879 19.069 -0.721 1.00 22.63 ? 8 DC A N4 1
ATOM 160 C C5 . DC A 1 8 ? 17.447 19.372 -2.496 1.00 26.75 ? 8 DC A C5 1
ATOM 161 C C6 . DC A 1 8 ? 18.047 18.873 -3.598 1.00 19.38 ? 8 DC A C6 1
HETATM 162 O O . HOH B 2 . ? 14.538 4.355 8.844 0.77 35.97 ? 9 HOH A O 1
HETATM 163 O O . HOH B 2 . ? 17.177 2.214 17.205 0.87 35.52 ? 10 HOH A O 1
HETATM 164 O O . HOH B 2 . ? 20.806 1.305 9.962 0.79 48.30 ? 11 HOH A O 1
HETATM 165 O O . HOH B 2 . ? 17.682 4.947 18.854 0.96 57.40 ? 12 HOH A O 1
HETATM 166 O O . HOH B 2 . ? 15.688 0.022 7.917 0.74 62.85 ? 13 HOH A O 1
HETATM 167 O O . HOH B 2 . ? 21.230 4.913 8.836 1.00 51.34 ? 14 HOH A O 1
HETATM 168 O O . HOH B 2 . ? 18.633 9.697 17.522 0.58 50.77 ? 15 HOH A O 1
HETATM 169 O O . HOH B 2 . ? 19.826 7.077 8.947 0.80 34.32 ? 16 HOH A O 1
HETATM 170 O O . HOH B 2 . ? 10.524 6.656 10.081 0.88 53.66 ? 17 HOH A O 1
HETATM 171 O O . HOH B 2 . ? 14.742 8.328 10.778 0.96 36.71 ? 18 HOH A O 1
HETATM 172 O O . HOH B 2 . ? 17.355 9.066 9.938 1.00 40.03 ? 19 HOH A O 1
HETATM 173 O O . HOH B 2 . ? 22.123 13.384 15.216 0.80 35.45 ? 20 HOH A O 1
HETATM 174 O O . HOH B 2 . ? 19.365 9.260 7.965 1.00 48.00 ? 21 HOH A O 1
HETATM 175 O O . HOH B 2 . ? 14.961 12.248 10.873 0.81 48.66 ? 22 HOH A O 1
HETATM 176 O O . HOH B 2 . ? 10.467 9.375 13.354 0.97 73.22 ? 23 HOH A O 1
HETATM 177 O O . HOH B 2 . ? 12.500 14.175 13.861 0.90 72.66 ? 24 HOH A O 1
HETATM 178 O O . HOH B 2 . ? 12.612 9.554 9.019 0.52 68.85 ? 25 HOH A O 1
HETATM 179 O O . HOH B 2 . ? 18.201 11.468 7.782 1.00 35.91 ? 26 HOH A O 1
HETATM 180 O O . HOH B 2 . ? 14.267 14.717 11.333 0.92 63.96 ? 27 HOH A O 1
HETATM 181 O O . HOH B 2 . ? 20.832 15.811 17.284 0.62 58.03 ? 28 HOH A O 1
HETATM 182 O O . HOH B 2 . ? 16.380 16.810 16.960 1.00 64.38 ? 29 HOH A O 1
HETATM 183 O O . HOH B 2 . ? 15.466 11.541 8.535 0.70 62.58 ? 30 HOH A O 1
HETATM 184 O O . HOH B 2 . ? 17.316 17.338 10.192 1.00 36.43 ? 31 HOH A O 1
HETATM 185 O O . HOH B 2 . ? 18.314 16.451 7.798 0.97 31.07 ? 32 HOH A O 1
HETATM 186 O O . HOH B 2 . ? 26.518 17.562 5.080 0.90 41.76 ? 33 HOH A O 1
HETATM 187 O O . HOH B 2 . ? 20.833 7.846 6.527 0.95 38.11 ? 34 HOH A O 1
HETATM 188 O O . HOH B 2 . ? 20.543 22.024 13.980 0.72 44.66 ? 35 HOH A O 1
HETATM 189 O O . HOH B 2 . ? 14.792 14.841 7.893 0.96 58.62 ? 36 HOH A O 1
HETATM 190 O O . HOH B 2 . ? 19.934 24.229 10.683 0.66 62.08 ? 37 HOH A O 1
HETATM 191 O O . HOH B 2 . ? 19.207 21.954 4.129 0.83 44.83 ? 38 HOH A O 1
HETATM 192 O O . HOH B 2 . ? 18.807 20.346 7.450 0.89 30.54 ? 39 HOH A O 1
HETATM 193 O O . HOH B 2 . ? 17.349 18.062 6.237 0.91 52.83 ? 40 HOH A O 1
HETATM 194 O O . HOH B 2 . ? 27.551 20.407 4.961 0.89 40.26 ? 41 HOH A O 1
HETATM 195 O O . HOH B 2 . ? 21.499 25.604 3.479 0.70 35.00 ? 42 HOH A O 1
HETATM 196 O O . HOH B 2 . ? 19.278 26.488 6.776 0.80 39.14 ? 43 HOH A O 1
HETATM 197 O O . HOH B 2 . ? 22.199 25.935 8.028 0.63 60.73 ? 44 HOH A O 1
HETATM 198 O O . HOH B 2 . ? 21.601 14.944 -4.192 0.93 29.84 ? 45 HOH A O 1
HETATM 199 O O . HOH B 2 . ? 18.189 20.135 2.274 0.88 33.67 ? 46 HOH A O 1
HETATM 200 O O . HOH B 2 . ? 22.016 26.454 0.697 1.00 59.43 ? 47 HOH A O 1
HETATM 201 O O . HOH B 2 . ? 16.658 18.791 3.424 0.88 41.61 ? 48 HOH A O 1
HETATM 202 O O . HOH B 2 . ? 19.074 22.515 -1.308 0.97 52.27 ? 49 HOH A O 1
HETATM 203 O O . HOH B 2 . ? 22.789 24.240 -2.869 0.89 57.65 ? 50 HOH A O 1
HETATM 204 O O . HOH B 2 . ? 8.656 6.254 12.931 0.79 59.98 ? 51 HOH A O 1
HETATM 205 O O . HOH B 2 . ? 17.347 15.522 -9.565 0.95 36.03 ? 52 HOH A O 1
HETATM 206 O O . HOH B 2 . ? 19.709 22.975 -8.068 1.00 65.46 ? 53 HOH A O 1
HETATM 207 O O . HOH B 2 . ? 24.708 18.547 -6.879 1.00 82.87 ? 54 HOH A O 1
HETATM 208 O O . HOH B 2 . ? 16.508 21.611 0.277 0.81 49.75 ? 55 HOH A O 1
HETATM 209 O O . HOH B 2 . ? 22.458 19.302 -10.033 0.99 69.07 ? 56 HOH A O 1
HETATM 210 O O . HOH B 2 . ? 25.670 25.247 1.733 0.74 56.66 ? 57 HOH A O 1
HETATM 211 O O . HOH B 2 . ? 20.848 16.328 -10.017 0.78 62.95 ? 58 HOH A O 1
#