data_1VT6
#
_entry.id 1VT6
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.383
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1VT6 pdb_00001vt6 10.2210/pdb1vt6/pdb
NDB ADH013 ? ?
RCSB RCSB003030 ? ?
WWPDB D_1000003030 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2011-07-13
2 'Structure model' 1 1 2023-12-27
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
3 2 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_database_2.pdbx_DOI'
2 2 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1VT6
_pdbx_database_status.recvd_initial_deposition_date 1988-08-18
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.SG_entry .
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Wang, A.H.-J.' 1
'Fujii, S.' 2
'Van Boom, J.H.' 3
'Rich, A.' 4
#
_citation.id primary
_citation.title 'Molecular structure of the octamer d(G-G-C-C-G-G-C-C): modified A-DNA.'
_citation.journal_abbrev Proc.Natl.Acad.Sci.USA
_citation.journal_volume 79
_citation.page_first 3968
_citation.page_last 3972
_citation.year 1982
_citation.journal_id_ASTM PNASA6
_citation.country US
_citation.journal_id_ISSN 0027-8424
_citation.journal_id_CSD 0040
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 6955784
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Wang, A.H.' 1 ?
primary 'Fujii, S.' 2 ?
primary 'van Boom, J.H.' 3 ?
primary 'Rich, A.' 4 ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description
;DNA (5'-D(*GP*GP*CP*CP*GP*GP*CP*C)-3')
;
_entity.formula_weight 2428.593
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DC)(DC)(DG)(DG)(DC)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GGCCGGCC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DG n
1 3 DC n
1 4 DC n
1 5 DG n
1 6 DG n
1 7 DC n
1 8 DC n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'Synthesized oligomer'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DC 3 3 3 DC C A . n
A 1 4 DC 4 4 4 DC C A . n
A 1 5 DG 5 5 5 DG G A . n
A 1 6 DG 6 6 6 DG G A . n
A 1 7 DC 7 7 7 DC C A . n
A 1 8 DC 8 8 8 DC C A . n
#
_cell.entry_id 1VT6
_cell.length_a 42.060
_cell.length_b 42.060
_cell.length_c 25.170
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 1VT6
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1VT6
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 46.33
_exptl_crystal.density_Matthews 2.29
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_details 'Sodium cacodylate, spermine, MgCl2, pH 7.00'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER 1 2 3
1 2 1 'NA CACODYLATE' 4 5 6
1 3 1 SPERMINE 7 8 9
1 4 1 MGCL2 10 11 12
1 5 2 WATER 13 14 15
#
_diffrn.id 1
_diffrn.ambient_temp 265.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'NICOLET P3'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'SEALED TUBE'
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1VT6
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high ?
_reflns.number_obs 1224
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_refine.entry_id 1VT6
_refine.ls_number_reflns_obs 920
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I 3.000
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 2.250
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1740000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.1740000
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_overall_phase_error ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 161
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 161
_refine_hist.d_res_high 2.250
_refine_hist.d_res_low .
#
_database_PDB_matrix.entry_id 1VT6
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1VT6
_struct.title 'Molecular structure of the octamer D(G-G-C-C-G-G-C-C) modified A-DNA'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1VT6
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA'
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1VT6
_struct_ref.pdbx_db_accession 1VT6
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin 1
_struct_ref.pdbx_seq_one_letter_code GGCCGGCC
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1VT6
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1VT6
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 800 ?
1 MORE -7 ?
1 'SSA (A^2)' 3100 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 2 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 2 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 2 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 3 N3 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 3 O2 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 3 N4 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 7 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 7 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 7 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C4'" A DG 1 ? ? "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? 108.50 103.10 5.40 0.90 N
2 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 113.03 108.30 4.73 0.30 N
3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 114.26 108.30 5.96 0.30 N
4 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 110.13 119.70 -9.57 1.20 Y
5 1 "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 102.83 109.40 -6.57 0.80 N
6 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 117.46 108.30 9.16 0.30 N
7 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 101.53 108.00 -6.47 0.70 N
8 1 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DG 5 ? ? 107.96 119.70 -11.74 1.20 Y
9 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 115.04 108.30 6.74 0.30 N
10 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 100.95 108.00 -7.05 0.70 N
11 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 103.58 108.00 -4.42 0.70 N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DC OP3 O N N 1
DC P P N N 2
DC OP1 O N N 3
DC OP2 O N N 4
DC "O5'" O N N 5
DC "C5'" C N N 6
DC "C4'" C N R 7
DC "O4'" O N N 8
DC "C3'" C N S 9
DC "O3'" O N N 10
DC "C2'" C N N 11
DC "C1'" C N R 12
DC N1 N N N 13
DC C2 C N N 14
DC O2 O N N 15
DC N3 N N N 16
DC C4 C N N 17
DC N4 N N N 18
DC C5 C N N 19
DC C6 C N N 20
DC HOP3 H N N 21
DC HOP2 H N N 22
DC "H5'" H N N 23
DC "H5''" H N N 24
DC "H4'" H N N 25
DC "H3'" H N N 26
DC "HO3'" H N N 27
DC "H2'" H N N 28
DC "H2''" H N N 29
DC "H1'" H N N 30
DC H41 H N N 31
DC H42 H N N 32
DC H5 H N N 33
DC H6 H N N 34
DG OP3 O N N 35
DG P P N N 36
DG OP1 O N N 37
DG OP2 O N N 38
DG "O5'" O N N 39
DG "C5'" C N N 40
DG "C4'" C N R 41
DG "O4'" O N N 42
DG "C3'" C N S 43
DG "O3'" O N N 44
DG "C2'" C N N 45
DG "C1'" C N R 46
DG N9 N Y N 47
DG C8 C Y N 48
DG N7 N Y N 49
DG C5 C Y N 50
DG C6 C N N 51
DG O6 O N N 52
DG N1 N N N 53
DG C2 C N N 54
DG N2 N N N 55
DG N3 N N N 56
DG C4 C Y N 57
DG HOP3 H N N 58
DG HOP2 H N N 59
DG "H5'" H N N 60
DG "H5''" H N N 61
DG "H4'" H N N 62
DG "H3'" H N N 63
DG "HO3'" H N N 64
DG "H2'" H N N 65
DG "H2''" H N N 66
DG "H1'" H N N 67
DG H8 H N N 68
DG H1 H N N 69
DG H21 H N N 70
DG H22 H N N 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DC OP3 P sing N N 1
DC OP3 HOP3 sing N N 2
DC P OP1 doub N N 3
DC P OP2 sing N N 4
DC P "O5'" sing N N 5
DC OP2 HOP2 sing N N 6
DC "O5'" "C5'" sing N N 7
DC "C5'" "C4'" sing N N 8
DC "C5'" "H5'" sing N N 9
DC "C5'" "H5''" sing N N 10
DC "C4'" "O4'" sing N N 11
DC "C4'" "C3'" sing N N 12
DC "C4'" "H4'" sing N N 13
DC "O4'" "C1'" sing N N 14
DC "C3'" "O3'" sing N N 15
DC "C3'" "C2'" sing N N 16
DC "C3'" "H3'" sing N N 17
DC "O3'" "HO3'" sing N N 18
DC "C2'" "C1'" sing N N 19
DC "C2'" "H2'" sing N N 20
DC "C2'" "H2''" sing N N 21
DC "C1'" N1 sing N N 22
DC "C1'" "H1'" sing N N 23
DC N1 C2 sing N N 24
DC N1 C6 sing N N 25
DC C2 O2 doub N N 26
DC C2 N3 sing N N 27
DC N3 C4 doub N N 28
DC C4 N4 sing N N 29
DC C4 C5 sing N N 30
DC N4 H41 sing N N 31
DC N4 H42 sing N N 32
DC C5 C6 doub N N 33
DC C5 H5 sing N N 34
DC C6 H6 sing N N 35
DG OP3 P sing N N 36
DG OP3 HOP3 sing N N 37
DG P OP1 doub N N 38
DG P OP2 sing N N 39
DG P "O5'" sing N N 40
DG OP2 HOP2 sing N N 41
DG "O5'" "C5'" sing N N 42
DG "C5'" "C4'" sing N N 43
DG "C5'" "H5'" sing N N 44
DG "C5'" "H5''" sing N N 45
DG "C4'" "O4'" sing N N 46
DG "C4'" "C3'" sing N N 47
DG "C4'" "H4'" sing N N 48
DG "O4'" "C1'" sing N N 49
DG "C3'" "O3'" sing N N 50
DG "C3'" "C2'" sing N N 51
DG "C3'" "H3'" sing N N 52
DG "O3'" "HO3'" sing N N 53
DG "C2'" "C1'" sing N N 54
DG "C2'" "H2'" sing N N 55
DG "C2'" "H2''" sing N N 56
DG "C1'" N9 sing N N 57
DG "C1'" "H1'" sing N N 58
DG N9 C8 sing Y N 59
DG N9 C4 sing Y N 60
DG C8 N7 doub Y N 61
DG C8 H8 sing N N 62
DG N7 C5 sing Y N 63
DG C5 C6 sing N N 64
DG C5 C4 doub Y N 65
DG C6 O6 doub N N 66
DG C6 N1 sing N N 67
DG N1 C2 sing N N 68
DG N1 H1 sing N N 69
DG C2 N2 sing N N 70
DG C2 N3 doub N N 71
DG N2 H21 sing N N 72
DG N2 H22 sing N N 73
DG N3 C4 sing N N 74
#
_ndb_struct_conf_na.entry_id 1VT6
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 7_555 -0.161 -0.265 -0.535 3.915 -0.389 -2.382 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A DG 2 1_555 A DC 7 7_555 -0.194 -0.220 -0.333 0.816 -4.221 1.220 2 A_DG2:DC7_A A 2 ? A 7 ? 19 1
1 A DC 3 1_555 A DG 6 7_555 0.185 -0.197 -0.478 15.533 -9.319 -0.918 3 A_DC3:DG6_A A 3 ? A 6 ? 19 1
1 A DC 4 1_555 A DG 5 7_555 0.189 -0.289 0.011 -13.316 -0.415 -3.689 4 A_DC4:DG5_A A 4 ? A 5 ? 19 1
1 A DG 5 1_555 A DC 4 7_555 -0.189 -0.289 0.011 13.316 -0.415 -3.689 5 A_DG5:DC4_A A 5 ? A 4 ? 19 1
1 A DG 6 1_555 A DC 3 7_555 -0.185 -0.197 -0.478 -15.533 -9.319 -0.918 6 A_DG6:DC3_A A 6 ? A 3 ? 19 1
1 A DC 7 1_555 A DG 2 7_555 0.194 -0.220 -0.333 -0.816 -4.221 1.220 7 A_DC7:DG2_A A 7 ? A 2 ? 19 1
1 A DC 8 1_555 A DG 1 7_555 0.161 -0.265 -0.535 -3.915 -0.389 -2.382 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 7_555 A DG 2 1_555 A DC 7 7_555 -0.324 -0.867 3.528 -3.732 12.813 35.276 -3.079 -0.003 3.059 20.269 5.904
37.641 1 AA_DG1DG2:DC7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A DG 2 1_555 A DC 7 7_555 A DC 3 1_555 A DG 6 7_555 0.074 -1.230 3.002 -2.879 2.687 28.855 -2.975 -0.714 2.858 5.361 5.743
29.117 2 AA_DG2DC3:DG6DC7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DC 3 1_555 A DG 6 7_555 A DC 4 1_555 A DG 5 7_555 -0.029 -1.220 4.145 0.397 3.158 43.828 -2.006 0.085 4.051 4.225 -0.531
43.938 3 AA_DC3DC4:DG5DG6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A DC 4 1_555 A DG 5 7_555 A DG 5 1_555 A DC 4 7_555 0.000 -2.150 2.657 0.000 14.737 13.268 -9.921 0.000 0.192 48.225 0.000
19.805 4 AA_DC4DG5:DC4DG5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DG 5 1_555 A DC 4 7_555 A DG 6 1_555 A DC 3 7_555 0.029 -1.220 4.145 -0.397 3.158 43.828 -2.006 -0.085 4.051 4.225 0.531
43.938 5 AA_DG5DG6:DC3DC4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A DG 6 1_555 A DC 3 7_555 A DC 7 1_555 A DG 2 7_555 -0.074 -1.230 3.002 2.879 2.687 28.855 -2.975 0.714 2.858 5.361 -5.743
29.117 6 AA_DG6DC7:DG2DC3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A DC 7 1_555 A DG 2 7_555 A DC 8 1_555 A DG 1 7_555 0.324 -0.867 3.528 3.732 12.813 35.276 -3.079 0.003 3.059 20.269 -5.904
37.641 7 AA_DC7DC8:DG1DG2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_atom_sites.entry_id 1VT6
_atom_sites.fract_transf_matrix[1][1] 0.023776
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023776
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.039730
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 7.758 -1.487 -6.171 1.00 10.00 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 7.068 -2.339 -5.217 1.00 10.00 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 8.002 -2.977 -4.204 1.00 10.00 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 9.350 -3.112 -4.750 1.00 10.00 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 8.180 -2.210 -2.912 1.00 10.00 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 7.855 -3.003 -1.769 1.00 10.00 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 9.641 -1.790 -2.796 1.00 10.00 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 10.313 -2.410 -3.996 1.00 10.00 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 10.961 -1.283 -4.767 1.00 10.00 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 10.459 -0.369 -5.675 1.00 10.00 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 11.353 0.477 -6.121 1.00 10.00 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 12.522 0.097 -5.465 1.00 10.00 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 13.839 0.631 -5.543 1.00 10.00 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 14.252 1.581 -6.207 1.00 10.00 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 14.735 -0.074 -4.716 1.00 10.00 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 14.419 -1.152 -3.914 1.00 10.00 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 15.417 -1.678 -3.198 1.00 10.00 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 13.188 -1.647 -3.842 1.00 10.00 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 12.300 -0.980 -4.634 1.00 10.00 ? 1 DG A C4 1
ATOM 20 P P . DG A 1 2 ? 7.489 -2.190 -0.443 1.00 10.00 ? 2 DG A P 1
ATOM 21 O OP1 . DG A 1 2 ? 6.974 -3.148 0.574 1.00 10.00 ? 2 DG A OP1 1
ATOM 22 O OP2 . DG A 1 2 ? 6.589 -1.115 -0.853 1.00 10.00 ? 2 DG A OP2 1
ATOM 23 O "O5'" . DG A 1 2 ? 8.927 -1.640 0.058 1.00 10.00 ? 2 DG A "O5'" 1
ATOM 24 C "C5'" . DG A 1 2 ? 9.729 -2.653 0.714 1.00 10.00 ? 2 DG A "C5'" 1
ATOM 25 C "C4'" . DG A 1 2 ? 10.836 -2.301 1.632 1.00 10.00 ? 2 DG A "C4'" 1
ATOM 26 O "O4'" . DG A 1 2 ? 12.022 -2.147 0.832 1.00 10.00 ? 2 DG A "O4'" 1
ATOM 27 C "C3'" . DG A 1 2 ? 10.741 -1.035 2.434 1.00 10.00 ? 2 DG A "C3'" 1
ATOM 28 O "O3'" . DG A 1 2 ? 10.783 -1.244 3.865 1.00 10.00 ? 2 DG A "O3'" 1
ATOM 29 C "C2'" . DG A 1 2 ? 11.965 -0.193 2.148 1.00 10.00 ? 2 DG A "C2'" 1
ATOM 30 C "C1'" . DG A 1 2 ? 12.657 -0.903 0.992 1.00 10.00 ? 2 DG A "C1'" 1
ATOM 31 N N9 . DG A 1 2 ? 12.503 0.023 -0.179 1.00 10.00 ? 2 DG A N9 1
ATOM 32 C C8 . DG A 1 2 ? 11.435 0.229 -1.025 1.00 10.00 ? 2 DG A C8 1
ATOM 33 N N7 . DG A 1 2 ? 11.655 1.136 -1.954 1.00 10.00 ? 2 DG A N7 1
ATOM 34 C C5 . DG A 1 2 ? 12.957 1.570 -1.698 1.00 10.00 ? 2 DG A C5 1
ATOM 35 C C6 . DG A 1 2 ? 13.754 2.545 -2.360 1.00 10.00 ? 2 DG A C6 1
ATOM 36 O O6 . DG A 1 2 ? 13.461 3.247 -3.328 1.00 10.00 ? 2 DG A O6 1
ATOM 37 N N1 . DG A 1 2 ? 15.020 2.660 -1.767 1.00 10.00 ? 2 DG A N1 1
ATOM 38 C C2 . DG A 1 2 ? 15.455 1.942 -0.679 1.00 10.00 ? 2 DG A C2 1
ATOM 39 N N2 . DG A 1 2 ? 16.682 2.135 -0.187 1.00 10.00 ? 2 DG A N2 1
ATOM 40 N N3 . DG A 1 2 ? 14.704 1.034 -0.064 1.00 10.00 ? 2 DG A N3 1
ATOM 41 C C4 . DG A 1 2 ? 13.466 0.904 -0.614 1.00 10.00 ? 2 DG A C4 1
ATOM 42 P P . DC A 1 3 ? 10.231 0.052 4.628 1.00 10.00 ? 3 DC A P 1
ATOM 43 O OP1 . DC A 1 3 ? 9.484 -0.324 5.841 1.00 10.00 ? 3 DC A OP1 1
ATOM 44 O OP2 . DC A 1 3 ? 9.440 0.780 3.610 1.00 10.00 ? 3 DC A OP2 1
ATOM 45 O "O5'" . DC A 1 3 ? 11.564 0.781 5.046 1.00 10.00 ? 3 DC A "O5'" 1
ATOM 46 C "C5'" . DC A 1 3 ? 12.832 0.103 5.105 1.00 10.00 ? 3 DC A "C5'" 1
ATOM 47 C "C4'" . DC A 1 3 ? 13.835 1.253 5.039 1.00 10.00 ? 3 DC A "C4'" 1
ATOM 48 O "O4'" . DC A 1 3 ? 14.145 1.551 3.670 1.00 10.00 ? 3 DC A "O4'" 1
ATOM 49 C "C3'" . DC A 1 3 ? 13.314 2.550 5.655 1.00 10.00 ? 3 DC A "C3'" 1
ATOM 50 O "O3'" . DC A 1 3 ? 14.099 2.891 6.798 1.00 10.00 ? 3 DC A "O3'" 1
ATOM 51 C "C2'" . DC A 1 3 ? 13.421 3.591 4.578 1.00 10.00 ? 3 DC A "C2'" 1
ATOM 52 C "C1'" . DC A 1 3 ? 14.215 2.902 3.412 1.00 10.00 ? 3 DC A "C1'" 1
ATOM 53 N N1 . DC A 1 3 ? 13.550 3.404 2.162 1.00 10.00 ? 3 DC A N1 1
ATOM 54 C C2 . DC A 1 3 ? 14.279 4.273 1.350 1.00 10.00 ? 3 DC A C2 1
ATOM 55 O O2 . DC A 1 3 ? 15.431 4.555 1.677 1.00 10.00 ? 3 DC A O2 1
ATOM 56 N N3 . DC A 1 3 ? 13.685 4.781 0.245 1.00 10.00 ? 3 DC A N3 1
ATOM 57 C C4 . DC A 1 3 ? 12.427 4.478 -0.070 1.00 10.00 ? 3 DC A C4 1
ATOM 58 N N4 . DC A 1 3 ? 11.917 5.008 -1.155 1.00 10.00 ? 3 DC A N4 1
ATOM 59 C C5 . DC A 1 3 ? 11.657 3.592 0.749 1.00 10.00 ? 3 DC A C5 1
ATOM 60 C C6 . DC A 1 3 ? 12.258 3.090 1.867 1.00 10.00 ? 3 DC A C6 1
ATOM 61 P P . DC A 1 4 ? 14.005 4.242 7.611 1.00 10.00 ? 4 DC A P 1
ATOM 62 O OP1 . DC A 1 4 ? 14.946 4.127 8.771 1.00 10.00 ? 4 DC A OP1 1
ATOM 63 O OP2 . DC A 1 4 ? 12.628 4.652 7.920 1.00 10.00 ? 4 DC A OP2 1
ATOM 64 O "O5'" . DC A 1 4 ? 14.693 5.295 6.586 1.00 10.00 ? 4 DC A "O5'" 1
ATOM 65 C "C5'" . DC A 1 4 ? 15.696 6.118 7.204 1.00 10.00 ? 4 DC A "C5'" 1
ATOM 66 C "C4'" . DC A 1 4 ? 16.276 7.264 6.438 1.00 10.00 ? 4 DC A "C4'" 1
ATOM 67 O "O4'" . DC A 1 4 ? 16.123 7.048 5.018 1.00 10.00 ? 4 DC A "O4'" 1
ATOM 68 C "C3'" . DC A 1 4 ? 15.670 8.634 6.635 1.00 10.00 ? 4 DC A "C3'" 1
ATOM 69 O "O3'" . DC A 1 4 ? 16.131 9.273 7.833 1.00 10.00 ? 4 DC A "O3'" 1
ATOM 70 C "C2'" . DC A 1 4 ? 16.106 9.380 5.386 1.00 10.00 ? 4 DC A "C2'" 1
ATOM 71 C "C1'" . DC A 1 4 ? 16.081 8.312 4.316 1.00 10.00 ? 4 DC A "C1'" 1
ATOM 72 N N1 . DC A 1 4 ? 14.827 8.179 3.542 1.00 10.00 ? 4 DC A N1 1
ATOM 73 C C2 . DC A 1 4 ? 14.535 9.053 2.509 1.00 10.00 ? 4 DC A C2 1
ATOM 74 O O2 . DC A 1 4 ? 15.364 9.921 2.259 1.00 10.00 ? 4 DC A O2 1
ATOM 75 N N3 . DC A 1 4 ? 13.359 8.891 1.852 1.00 10.00 ? 4 DC A N3 1
ATOM 76 C C4 . DC A 1 4 ? 12.497 7.922 2.167 1.00 10.00 ? 4 DC A C4 1
ATOM 77 N N4 . DC A 1 4 ? 11.364 7.780 1.503 1.00 10.00 ? 4 DC A N4 1
ATOM 78 C C5 . DC A 1 4 ? 12.777 7.006 3.235 1.00 10.00 ? 4 DC A C5 1
ATOM 79 C C6 . DC A 1 4 ? 13.953 7.187 3.893 1.00 10.00 ? 4 DC A C6 1
ATOM 80 P P . DG A 1 5 ? 14.846 9.746 8.667 1.00 10.00 ? 5 DG A P 1
ATOM 81 O OP1 . DG A 1 5 ? 15.236 10.067 10.041 1.00 10.00 ? 5 DG A OP1 1
ATOM 82 O OP2 . DG A 1 5 ? 13.770 8.733 8.569 1.00 10.00 ? 5 DG A OP2 1
ATOM 83 O "O5'" . DG A 1 5 ? 14.391 11.040 7.850 1.00 10.00 ? 5 DG A "O5'" 1
ATOM 84 C "C5'" . DG A 1 5 ? 15.381 11.961 7.379 1.00 10.00 ? 5 DG A "C5'" 1
ATOM 85 C "C4'" . DG A 1 5 ? 14.824 13.009 6.438 1.00 10.00 ? 5 DG A "C4'" 1
ATOM 86 O "O4'" . DG A 1 5 ? 14.360 12.292 5.238 1.00 10.00 ? 5 DG A "O4'" 1
ATOM 87 C "C3'" . DG A 1 5 ? 13.653 13.854 6.877 1.00 10.00 ? 5 DG A "C3'" 1
ATOM 88 O "O3'" . DG A 1 5 ? 13.856 15.286 7.014 1.00 10.00 ? 5 DG A "O3'" 1
ATOM 89 C "C2'" . DG A 1 5 ? 12.606 13.674 5.790 1.00 10.00 ? 5 DG A "C2'" 1
ATOM 90 C "C1'" . DG A 1 5 ? 13.390 13.081 4.598 1.00 10.00 ? 5 DG A "C1'" 1
ATOM 91 N N9 . DG A 1 5 ? 12.389 12.321 3.791 1.00 10.00 ? 5 DG A N9 1
ATOM 92 C C8 . DG A 1 5 ? 11.743 11.155 4.153 1.00 10.00 ? 5 DG A C8 1
ATOM 93 N N7 . DG A 1 5 ? 10.886 10.723 3.260 1.00 10.00 ? 5 DG A N7 1
ATOM 94 C C5 . DG A 1 5 ? 10.946 11.687 2.258 1.00 10.00 ? 5 DG A C5 1
ATOM 95 C C6 . DG A 1 5 ? 10.231 11.758 1.026 1.00 10.00 ? 5 DG A C6 1
ATOM 96 O O6 . DG A 1 5 ? 9.407 10.969 0.587 1.00 10.00 ? 5 DG A O6 1
ATOM 97 N N1 . DG A 1 5 ? 10.601 12.893 0.305 1.00 10.00 ? 5 DG A N1 1
ATOM 98 C C2 . DG A 1 5 ? 11.534 13.829 0.702 1.00 10.00 ? 5 DG A C2 1
ATOM 99 N N2 . DG A 1 5 ? 11.741 14.842 -0.142 1.00 10.00 ? 5 DG A N2 1
ATOM 100 N N3 . DG A 1 5 ? 12.207 13.759 1.842 1.00 10.00 ? 5 DG A N3 1
ATOM 101 C C4 . DG A 1 5 ? 11.855 12.668 2.572 1.00 10.00 ? 5 DG A C4 1
ATOM 102 P P . DG A 1 6 ? 12.525 16.118 7.376 1.00 10.00 ? 6 DG A P 1
ATOM 103 O OP1 . DG A 1 6 ? 12.912 17.214 8.302 1.00 10.00 ? 6 DG A OP1 1
ATOM 104 O OP2 . DG A 1 6 ? 11.462 15.198 7.821 1.00 10.00 ? 6 DG A OP2 1
ATOM 105 O "O5'" . DG A 1 6 ? 12.138 16.729 5.950 1.00 10.00 ? 6 DG A "O5'" 1
ATOM 106 C "C5'" . DG A 1 6 ? 13.094 17.526 5.263 1.00 10.00 ? 6 DG A "C5'" 1
ATOM 107 C "C4'" . DG A 1 6 ? 12.450 18.261 4.107 1.00 10.00 ? 6 DG A "C4'" 1
ATOM 108 O "O4'" . DG A 1 6 ? 12.308 17.376 2.957 1.00 10.00 ? 6 DG A "O4'" 1
ATOM 109 C "C3'" . DG A 1 6 ? 11.067 18.851 4.302 1.00 10.00 ? 6 DG A "C3'" 1
ATOM 110 O "O3'" . DG A 1 6 ? 11.173 20.133 4.890 1.00 10.00 ? 6 DG A "O3'" 1
ATOM 111 C "C2'" . DG A 1 6 ? 10.590 18.972 2.844 1.00 10.00 ? 6 DG A "C2'" 1
ATOM 112 C "C1'" . DG A 1 6 ? 11.101 17.690 2.266 1.00 10.00 ? 6 DG A "C1'" 1
ATOM 113 N N9 . DG A 1 6 ? 10.277 16.495 2.580 1.00 10.00 ? 6 DG A N9 1
ATOM 114 C C8 . DG A 1 6 ? 10.457 15.580 3.594 1.00 10.00 ? 6 DG A C8 1
ATOM 115 N N7 . DG A 1 6 ? 9.568 14.626 3.600 1.00 10.00 ? 6 DG A N7 1
ATOM 116 C C5 . DG A 1 6 ? 8.733 14.933 2.529 1.00 10.00 ? 6 DG A C5 1
ATOM 117 C C6 . DG A 1 6 ? 7.572 14.271 2.036 1.00 10.00 ? 6 DG A C6 1
ATOM 118 O O6 . DG A 1 6 ? 7.053 13.242 2.472 1.00 10.00 ? 6 DG A O6 1
ATOM 119 N N1 . DG A 1 6 ? 7.051 14.928 0.928 1.00 10.00 ? 6 DG A N1 1
ATOM 120 C C2 . DG A 1 6 ? 7.569 16.076 0.372 1.00 10.00 ? 6 DG A C2 1
ATOM 121 N N2 . DG A 1 6 ? 6.930 16.609 -0.682 1.00 10.00 ? 6 DG A N2 1
ATOM 122 N N3 . DG A 1 6 ? 8.641 16.705 0.829 1.00 10.00 ? 6 DG A N3 1
ATOM 123 C C4 . DG A 1 6 ? 9.172 16.067 1.898 1.00 10.00 ? 6 DG A C4 1
ATOM 124 P P . DC A 1 7 ? 9.892 20.811 5.540 1.00 10.00 ? 7 DC A P 1
ATOM 125 O OP1 . DC A 1 7 ? 10.219 22.211 5.844 1.00 10.00 ? 7 DC A OP1 1
ATOM 126 O OP2 . DC A 1 7 ? 9.497 19.936 6.667 1.00 10.00 ? 7 DC A OP2 1
ATOM 127 O "O5'" . DC A 1 7 ? 8.769 20.745 4.430 1.00 10.00 ? 7 DC A "O5'" 1
ATOM 128 C "C5'" . DC A 1 7 ? 8.631 21.857 3.533 1.00 10.00 ? 7 DC A "C5'" 1
ATOM 129 C "C4'" . DC A 1 7 ? 7.455 21.649 2.653 1.00 10.00 ? 7 DC A "C4'" 1
ATOM 130 O "O4'" . DC A 1 7 ? 7.443 20.332 2.058 1.00 10.00 ? 7 DC A "O4'" 1
ATOM 131 C "C3'" . DC A 1 7 ? 6.087 21.712 3.353 1.00 10.00 ? 7 DC A "C3'" 1
ATOM 132 O "O3'" . DC A 1 7 ? 5.807 23.028 3.743 1.00 10.00 ? 7 DC A "O3'" 1
ATOM 133 C "C2'" . DC A 1 7 ? 5.225 21.148 2.221 1.00 10.00 ? 7 DC A "C2'" 1
ATOM 134 C "C1'" . DC A 1 7 ? 6.076 19.981 1.805 1.00 10.00 ? 7 DC A "C1'" 1
ATOM 135 N N1 . DC A 1 7 ? 5.891 18.708 2.575 1.00 10.00 ? 7 DC A N1 1
ATOM 136 C C2 . DC A 1 7 ? 4.982 17.793 2.042 1.00 10.00 ? 7 DC A C2 1
ATOM 137 O O2 . DC A 1 7 ? 4.393 18.143 1.010 1.00 10.00 ? 7 DC A O2 1
ATOM 138 N N3 . DC A 1 7 ? 4.799 16.612 2.689 1.00 10.00 ? 7 DC A N3 1
ATOM 139 C C4 . DC A 1 7 ? 5.494 16.310 3.798 1.00 10.00 ? 7 DC A C4 1
ATOM 140 N N4 . DC A 1 7 ? 5.280 15.146 4.392 1.00 10.00 ? 7 DC A N4 1
ATOM 141 C C5 . DC A 1 7 ? 6.444 17.231 4.347 1.00 10.00 ? 7 DC A C5 1
ATOM 142 C C6 . DC A 1 7 ? 6.594 18.410 3.693 1.00 10.00 ? 7 DC A C6 1
ATOM 143 P P . DC A 1 8 ? 4.514 23.438 4.563 1.00 10.00 ? 8 DC A P 1
ATOM 144 O OP1 . DC A 1 8 ? 4.269 24.887 4.394 1.00 10.00 ? 8 DC A OP1 1
ATOM 145 O OP2 . DC A 1 8 ? 4.584 22.910 5.933 1.00 10.00 ? 8 DC A OP2 1
ATOM 146 O "O5'" . DC A 1 8 ? 3.336 22.688 3.770 1.00 10.00 ? 8 DC A "O5'" 1
ATOM 147 C "C5'" . DC A 1 8 ? 2.451 23.459 2.935 1.00 10.00 ? 8 DC A "C5'" 1
ATOM 148 C "C4'" . DC A 1 8 ? 1.216 22.677 2.556 1.00 10.00 ? 8 DC A "C4'" 1
ATOM 149 O "O4'" . DC A 1 8 ? 1.587 21.348 2.091 1.00 10.00 ? 8 DC A "O4'" 1
ATOM 150 C "C3'" . DC A 1 8 ? 0.207 22.428 3.679 1.00 10.00 ? 8 DC A "C3'" 1
ATOM 151 O "O3'" . DC A 1 8 ? -0.569 23.596 3.987 1.00 10.00 ? 8 DC A "O3'" 1
ATOM 152 C "C2'" . DC A 1 8 ? -0.549 21.204 3.108 1.00 10.00 ? 8 DC A "C2'" 1
ATOM 153 C "C1'" . DC A 1 8 ? 0.591 20.382 2.480 1.00 10.00 ? 8 DC A "C1'" 1
ATOM 154 N N1 . DC A 1 8 ? 1.248 19.382 3.378 1.00 10.00 ? 8 DC A N1 1
ATOM 155 C C2 . DC A 1 8 ? 0.727 18.085 3.444 1.00 10.00 ? 8 DC A C2 1
ATOM 156 O O2 . DC A 1 8 ? -0.263 17.796 2.747 1.00 10.00 ? 8 DC A O2 1
ATOM 157 N N3 . DC A 1 8 ? 1.330 17.188 4.265 1.00 10.00 ? 8 DC A N3 1
ATOM 158 C C4 . DC A 1 8 ? 2.383 17.522 5.018 1.00 10.00 ? 8 DC A C4 1
ATOM 159 N N4 . DC A 1 8 ? 2.923 16.614 5.817 1.00 10.00 ? 8 DC A N4 1
ATOM 160 C C5 . DC A 1 8 ? 2.923 18.846 4.974 1.00 10.00 ? 8 DC A C5 1
ATOM 161 C C6 . DC A 1 8 ? 2.320 19.727 4.134 1.00 10.00 ? 8 DC A C6 1
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