data_1VS2
#
_entry.id 1VS2
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.383
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1VS2 pdb_00001vs2 10.2210/pdb1vs2/pdb
NDB DDH010 ? ?
RCSB RCSB003002 ? ?
WWPDB D_1000003002 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2006-06-27
2 'Structure model' 1 1 2011-06-14
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2011-07-27
5 'Structure model' 1 4 2012-02-08
6 'Structure model' 1 5 2013-02-27
7 'Structure model' 1 6 2023-12-27
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Atomic model'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 4 'Structure model' 'Non-polymer description'
7 4 'Structure model' 'Structure summary'
8 5 'Structure model' 'Derived calculations'
9 6 'Structure model' Other
10 7 'Structure model' Advisory
11 7 'Structure model' 'Data collection'
12 7 'Structure model' 'Database references'
13 7 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 7 'Structure model' chem_comp_atom
2 7 'Structure model' chem_comp_bond
3 7 'Structure model' database_2
4 7 'Structure model' pdbx_validate_polymer_linkage
5 7 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 7 'Structure model' '_database_2.pdbx_DOI'
2 7 'Structure model' '_database_2.pdbx_database_accession'
3 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1VS2
_pdbx_database_status.recvd_initial_deposition_date 1986-10-21
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.content_type
_pdbx_database_related.details
PDB 185D unspecified 'SOLUTION STRUCTURE OF D(GACGTC) COMPLEXED WITH TRIOSTIN A'
PDB 193D unspecified 'SOLUTION STRUCTURE OF D(ACACGTGT) COMPLEXED WITH QUINOMYCIN UK-6305'
PDB 1PFE unspecified 'CRYSTAL STRUCTURE OF D(GCGTACG) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P6322'
PDB 1XVK unspecified 'CRYSTAL STRUCTURE OF D(GCGTACGC) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P632'
PDB 1XVN unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P632'
PDB 1XVR unspecified 'CRYSTAL STRUCTURE OF D(CGTACG) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP C21'
PDB 2ADW unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P42212'
PDB 2DA8 unspecified 'SOLUTION STRUCTURE OF D(GATATC) COMPLEXED WITH A MODIFIED TRIOSTIN A AT POSITIONS 4 AND 8'
PDB 3GO3 unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P41212'
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Wang, A.H.-J.' 1
'Ughetto, G.' 2
'Quigley, G.J.' 3
'Rich, A.' 4
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'Interactions of Quinoxaline Antibiotic and DNA: The Molecular Structure of a Triostin A-D(Gcgtacgc) Complex.'
J.Biomol.Struct.Dyn. 4 319 ? 1986 JBSDD6 US 0739-1102 0646 ? 3271447 ?
1 'Non-Watson-Crick G-C and A-T Base Pairs in a DNA-Antibiotic Complex' Science 232
1255 ? 1986 SCIEAS US 0036-8075 0038 ? ? 10.1126/SCIENCE.3704650
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Wang, A.H.' 1 ?
primary 'Ughetto, G.' 2 ?
primary 'Quigley, G.J.' 3 ?
primary 'Rich, A.' 4 ?
1 'Quigley, G.J.' 5 ?
1 'Ughetto, G.' 6 ?
1 'Van Der Marel, G.A.' 7 ?
1 'Van Boom, J.H.' 8 ?
1 'Wang, A.H.-J.' 9 ?
1 'Rich, A.' 10 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3'" 2427.605 1 ? ? ? ?
2 polymer nat 'TRIOSTIN A' 794.982 1 ? ? ? ?
3 non-polymer syn 2-CARBOXYQUINOXALINE 174.156 2 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polydeoxyribonucleotide no no '(DG)(DC)(DG)(DT)(DA)(DC)(DG)(DC)' GCGTACGC A ?
2 'polypeptide(L)' no yes '(DSN)A(NCY)(MVA)(DSN)A(NCY)(MVA)' SAXVSAXV B ?
#
_pdbx_entity_nonpoly.entity_id 3
_pdbx_entity_nonpoly.name 2-CARBOXYQUINOXALINE
_pdbx_entity_nonpoly.comp_id QUI
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DC n
1 3 DG n
1 4 DT n
1 5 DA n
1 6 DC n
1 7 DG n
1 8 DC n
2 1 DSN n
2 2 ALA n
2 3 NCY n
2 4 MVA n
2 5 DSN n
2 6 ALA n
2 7 NCY n
2 8 MVA n
#
_entity_src_nat.entity_id 2
_entity_src_nat.pdbx_src_id 1
_entity_src_nat.pdbx_alt_source_flag sample
_entity_src_nat.pdbx_beg_seq_num ?
_entity_src_nat.pdbx_end_seq_num ?
_entity_src_nat.common_name ?
_entity_src_nat.pdbx_organism_scientific STREPTOMYCINEAE
_entity_src_nat.pdbx_ncbi_taxonomy_id 1931
_entity_src_nat.genus ?
_entity_src_nat.species ?
_entity_src_nat.strain ?
_entity_src_nat.tissue ?
_entity_src_nat.tissue_fraction ?
_entity_src_nat.pdbx_secretion ?
_entity_src_nat.pdbx_fragment ?
_entity_src_nat.pdbx_variant ?
_entity_src_nat.pdbx_cell_line ?
_entity_src_nat.pdbx_atcc ?
_entity_src_nat.pdbx_cellular_location ?
_entity_src_nat.pdbx_organ ?
_entity_src_nat.pdbx_organelle ?
_entity_src_nat.pdbx_cell ?
_entity_src_nat.pdbx_plasmid_name ?
_entity_src_nat.pdbx_plasmid_details ?
_entity_src_nat.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173
NCY 'L-peptide linking' . N-METHYLCYSTEINE ? 'C4 H9 N O2 S' 135.185
QUI non-polymer . 2-CARBOXYQUINOXALINE ? 'C9 H6 N2 O2' 174.156
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG DG A . n
A 1 2 DC 2 2 2 DC DC A . n
A 1 3 DG 3 3 3 DG DG A . n
A 1 4 DT 4 4 4 DT DT A . n
A 1 5 DA 5 5 5 DA DA A . n
A 1 6 DC 6 6 6 DC DC A . n
A 1 7 DG 7 7 7 DG DG A . n
A 1 8 DC 8 8 8 DC DC A . n
B 2 1 DSN 1 1 1 DSN DSN B . n
B 2 2 ALA 2 2 2 ALA ALA B . n
B 2 3 NCY 3 3 3 NCY NCY B . n
B 2 4 MVA 4 4 4 MVA MVA B . n
B 2 5 DSN 5 5 5 DSN DSN B . n
B 2 6 ALA 6 6 6 ALA ALA B . n
B 2 7 NCY 7 7 7 NCY NCY B . n
B 2 8 MVA 8 8 8 MVA MVA B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 QUI 1 0 0 QUI QUI B .
D 3 QUI 1 9 9 QUI QUI B .
#
_software.name NUCLSQ
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 1VS2
_cell.length_a 40.900
_cell.length_b 40.900
_cell.length_c 80.700
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 1VS2
_symmetry.space_group_name_H-M 'P 63 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 182
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1VS2
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 3.84
_exptl_crystal.density_percent_sol 67.94
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 4.50
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details 'PH 4.50, VAPOR DIFFUSION'
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 'NA ACETATE' ? ? ?
1 4 1 NACL ? ? ?
1 5 1 MGCL2 ? ? ?
1 6 1 SPERMINE ? ? ?
1 7 2 WATER ? ? ?
1 8 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 285.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'NICOLET P3'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source ?
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 1VS2
_reflns.observed_criterion_sigma_I 1.500
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high 2.000
_reflns.number_obs 1130
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 1VS2
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 1130
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 10.00
_refine.ls_d_res_high 2.00
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.200
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 52
_refine_hist.pdbx_number_atoms_nucleic_acid 161
_refine_hist.pdbx_number_atoms_ligand 24
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 237
_refine_hist.d_res_high 2.00
_refine_hist.d_res_low 10.00
#
_database_PDB_matrix.entry_id 1VS2
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1VS2
_struct.title
'Interactions of quinoxaline antibiotic and DNA: the molecular structure of a TRIOSTIN A-D(GCGTACGC) complex'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1VS2
_struct_keywords.pdbx_keywords DNA/ANTIBIOTIC
_struct_keywords.text 'BISINTERCALATOR, DESIPEPTIDE, QUINOXALINE, ANTIBIOTIC, ANTITUMOR, DNA-ANTIBIOTIC COMPLEX'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 3 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
1 PDB 1VS2 1 ? ? 1VS2 ?
2 NOR NOR01129 2 ? ? NOR01129 ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1VS2 A 1 ? 8 ? 1VS2 1 ? 8 ? 1 8
2 2 1VS2 B 1 ? 8 ? NOR01129 1 ? 8 ? 1 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 790 ?
1 MORE -6.6 ?
1 'SSA (A^2)' 3900 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 9_555 -x,-x+y,-z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? B NCY 3 SG ? ? ? 1_555 B NCY 7 SG ? ? B NCY 3 B NCY 7 1_555 ? ? ? ? ? ? ? 1.980 ? ?
covale1 covale both ? C QUI . C ? ? ? 1_555 B DSN 1 N ? ? B QUI 0 B DSN 1 1_555 ? ? ? ? ? ? ? 1.273 ? ?
covale2 covale both ? B DSN 1 C ? ? ? 1_555 B ALA 2 N ? ? B DSN 1 B ALA 2 1_555 ? ? ? ? ? ? ? 1.442 ? ?
covale3 covale one ? B DSN 1 OG ? ? ? 1_555 B MVA 8 C ? ? B DSN 1 B MVA 8 1_555 ? ? ? ? ? ? ? 1.491 ? ?
covale4 covale both ? B ALA 2 C ? ? ? 1_555 B NCY 3 N ? ? B ALA 2 B NCY 3 1_555 ? ? ? ? ? ? ? 1.403 ? ?
covale5 covale both ? B NCY 3 C ? ? ? 1_555 B MVA 4 N ? ? B NCY 3 B MVA 4 1_555 ? ? ? ? ? ? ? 1.416 ? ?
covale6 covale one ? B MVA 4 C ? ? ? 1_555 B DSN 5 OG ? ? B MVA 4 B DSN 5 1_555 ? ? ? ? ? ? ? 1.508 ? ?
covale7 covale both ? B DSN 5 C ? ? ? 1_555 B ALA 6 N ? ? B DSN 5 B ALA 6 1_555 ? ? ? ? ? ? ? 1.423 ? ?
covale8 covale both ? B DSN 5 N ? ? ? 1_555 D QUI . C ? ? B DSN 5 B QUI 9 1_555 ? ? ? ? ? ? ? 1.351 ? ?
covale9 covale both ? B ALA 6 C ? ? ? 1_555 B NCY 7 N ? ? B ALA 6 B NCY 7 1_555 ? ? ? ? ? ? ? 1.400 ? ?
covale10 covale both ? B NCY 7 C ? ? ? 1_555 B MVA 8 N ? ? B NCY 7 B MVA 8 1_555 ? ? ? ? ? ? ? 1.418 ? ?
hydrog1 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 9_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ?
hydrog2 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 2 A DG 7 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 2 A DG 7 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 2 A DG 7 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 5 N7 ? ? A DT 4 A DA 5 9_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 4 A DA 5 9_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 5 A DT 4 9_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog11 hydrog ? ? A DA 5 N7 ? ? ? 1_555 A DT 4 N3 ? ? A DA 5 A DT 4 9_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 7 A DC 2 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 7 A DC 2 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 7 A DC 2 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 9_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
hydrog ? ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software ? ? ? ? 8 'BINDING SITE FOR CHAIN B OF TRIOSTIN A'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 8 DG A 1 ? DG A 1 . ? 1_555 ?
2 AC1 8 DC A 2 ? DC A 2 . ? 1_555 ?
3 AC1 8 DG A 3 ? DG A 3 . ? 1_555 ?
4 AC1 8 DT A 4 ? DT A 4 . ? 1_555 ?
5 AC1 8 DA A 5 ? DA A 5 . ? 1_555 ?
6 AC1 8 DC A 6 ? DC A 6 . ? 1_555 ?
7 AC1 8 DG A 7 ? DG A 7 . ? 1_555 ?
8 AC1 8 DC A 8 ? DC A 8 . ? 1_555 ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? 1.467 1.516 -0.049 0.008 N
2 1 C6 A DG 1 ? ? N1 A DG 1 ? ? 1.334 1.391 -0.057 0.007 N
3 1 C2 A DG 1 ? ? N2 A DG 1 ? ? 1.238 1.341 -0.103 0.010 N
4 1 P A DC 2 ? ? "O5'" A DC 2 ? ? 1.663 1.593 0.070 0.010 N
5 1 P A DG 3 ? ? "O5'" A DG 3 ? ? 1.685 1.593 0.092 0.010 N
6 1 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 1.592 1.529 0.063 0.010 N
7 1 "C2'" A DG 3 ? ? "C1'" A DG 3 ? ? 1.596 1.519 0.077 0.010 N
8 1 C6 A DG 3 ? ? N1 A DG 3 ? ? 1.331 1.391 -0.060 0.007 N
9 1 C2 A DG 3 ? ? N2 A DG 3 ? ? 1.237 1.341 -0.104 0.010 N
10 1 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.621 1.496 0.125 0.006 N
11 1 P A DA 5 ? ? "O5'" A DA 5 ? ? 1.656 1.593 0.063 0.010 N
12 1 "C2'" A DA 5 ? ? "C1'" A DA 5 ? ? 1.579 1.519 0.060 0.010 N
13 1 "C2'" A DC 6 ? ? "C1'" A DC 6 ? ? 1.593 1.519 0.074 0.010 N
14 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? 1.499 1.420 0.079 0.011 N
15 1 C6 A DG 7 ? ? N1 A DG 7 ? ? 1.317 1.391 -0.074 0.007 N
16 1 C2 A DG 7 ? ? N2 A DG 7 ? ? 1.240 1.341 -0.101 0.010 N
17 1 CB B DSN 5 ? ? OG B DSN 5 ? ? 1.540 1.418 0.122 0.013 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C1'" A DG 1 ? ? "O4'" A DG 1 ? ? "C4'" A DG 1 ? ? 115.58 110.30 5.28 0.70 N
2 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.19 108.30 1.89 0.30 N
3 1 C6 A DG 1 ? ? N1 A DG 1 ? ? C2 A DG 1 ? ? 117.35 125.10 -7.75 0.60 N
4 1 N1 A DG 1 ? ? C2 A DG 1 ? ? N3 A DG 1 ? ? 129.48 123.90 5.58 0.60 N
5 1 C5 A DG 1 ? ? C6 A DG 1 ? ? N1 A DG 1 ? ? 118.91 111.50 7.41 0.50 N
6 1 C4 A DG 1 ? ? C5 A DG 1 ? ? N7 A DG 1 ? ? 113.41 110.80 2.61 0.40 N
7 1 N1 A DG 1 ? ? C2 A DG 1 ? ? N2 A DG 1 ? ? 121.76 116.20 5.56 0.90 N
8 1 N3 A DG 1 ? ? C2 A DG 1 ? ? N2 A DG 1 ? ? 108.75 119.90 -11.15 0.70 N
9 1 C5 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 120.45 128.60 -8.15 0.60 N
10 1 "O5'" A DC 2 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 94.18 105.70 -11.52 0.90 N
11 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 98.97 108.00 -9.03 0.70 N
12 1 C2 A DC 2 ? ? N3 A DC 2 ? ? C4 A DC 2 ? ? 124.55 119.90 4.65 0.50 N
13 1 N3 A DC 2 ? ? C4 A DC 2 ? ? C5 A DC 2 ? ? 117.48 121.90 -4.42 0.40 N
14 1 N3 A DC 2 ? ? C4 A DC 2 ? ? N4 A DC 2 ? ? 122.25 118.00 4.25 0.70 N
15 1 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P A DG 3 ? ? 111.77 119.70 -7.93 1.20 Y
16 1 "O5'" A DG 3 ? ? P A DG 3 ? ? OP2 A DG 3 ? ? 99.71 105.70 -5.99 0.90 N
17 1 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 106.18 120.90 -14.72 1.60 N
18 1 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 97.47 104.50 -7.03 0.40 N
19 1 "C1'" A DG 3 ? ? "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? 116.42 110.30 6.12 0.70 N
20 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? "C2'" A DG 3 ? ? 100.63 105.90 -5.27 0.80 N
21 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 120.91 108.30 12.61 0.30 N
22 1 C6 A DG 3 ? ? N1 A DG 3 ? ? C2 A DG 3 ? ? 119.30 125.10 -5.80 0.60 N
23 1 N1 A DG 3 ? ? C2 A DG 3 ? ? N3 A DG 3 ? ? 127.79 123.90 3.89 0.60 N
24 1 C5 A DG 3 ? ? C6 A DG 3 ? ? N1 A DG 3 ? ? 117.76 111.50 6.26 0.50 N
25 1 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 111.40 119.90 -8.50 0.70 N
26 1 C5 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 120.89 128.60 -7.71 0.60 N
27 1 P A DT 4 ? ? "O5'" A DT 4 ? ? "C5'" A DT 4 ? ? 102.81 120.90 -18.09 1.60 N
28 1 C6 A DT 4 ? ? N1 A DT 4 ? ? C2 A DT 4 ? ? 118.21 121.30 -3.09 0.50 N
29 1 N1 A DT 4 ? ? C2 A DT 4 ? ? N3 A DT 4 ? ? 118.76 114.60 4.16 0.60 N
30 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 121.79 127.20 -5.41 0.60 N
31 1 N3 A DT 4 ? ? C4 A DT 4 ? ? C5 A DT 4 ? ? 122.33 115.20 7.13 0.60 N
32 1 C4 A DT 4 ? ? C5 A DT 4 ? ? C6 A DT 4 ? ? 109.70 118.00 -8.30 0.60 N
33 1 C5 A DT 4 ? ? C6 A DT 4 ? ? N1 A DT 4 ? ? 129.19 123.70 5.49 0.60 N
34 1 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 117.89 122.30 -4.41 0.60 N
35 1 N3 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 114.67 119.90 -5.23 0.60 N
36 1 C4 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 123.55 119.00 4.55 0.60 N
37 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 126.74 122.90 3.84 0.60 N
38 1 "O5'" A DA 5 ? ? P A DA 5 ? ? OP1 A DA 5 ? ? 97.51 105.70 -8.19 0.90 N
39 1 P A DA 5 ? ? "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? 108.78 120.90 -12.12 1.60 N
40 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 115.90 108.30 7.60 0.30 N
41 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DC 6 ? ? 132.50 119.70 12.80 1.20 Y
42 1 "O5'" A DC 6 ? ? P A DC 6 ? ? OP1 A DC 6 ? ? 99.91 105.70 -5.79 0.90 N
43 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 115.02 108.30 6.72 0.30 N
44 1 C2 A DC 6 ? ? N3 A DC 6 ? ? C4 A DC 6 ? ? 125.18 119.90 5.28 0.50 N
45 1 N3 A DC 6 ? ? C4 A DC 6 ? ? C5 A DC 6 ? ? 116.72 121.90 -5.18 0.40 N
46 1 C5 A DC 6 ? ? C6 A DC 6 ? ? N1 A DC 6 ? ? 125.66 121.00 4.66 0.50 N
47 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 125.76 118.90 6.86 0.60 N
48 1 N3 A DC 6 ? ? C4 A DC 6 ? ? N4 A DC 6 ? ? 123.05 118.00 5.05 0.70 N
49 1 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DG 7 ? ? 136.14 119.70 16.44 1.20 Y
50 1 "O4'" A DG 7 ? ? "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? 98.17 104.50 -6.33 0.40 N
51 1 "C1'" A DG 7 ? ? "O4'" A DG 7 ? ? "C4'" A DG 7 ? ? 98.54 110.10 -11.56 1.00 N
52 1 "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? "C2'" A DG 7 ? ? 93.04 102.20 -9.16 0.70 N
53 1 N9 A DG 7 ? ? "C1'" A DG 7 ? ? "C2'" A DG 7 ? ? 126.57 114.30 12.27 1.40 N
54 1 C6 A DG 7 ? ? N1 A DG 7 ? ? C2 A DG 7 ? ? 120.31 125.10 -4.79 0.60 N
55 1 N1 A DG 7 ? ? C2 A DG 7 ? ? N3 A DG 7 ? ? 128.74 123.90 4.84 0.60 N
56 1 C2 A DG 7 ? ? N3 A DG 7 ? ? C4 A DG 7 ? ? 108.77 111.90 -3.13 0.50 N
57 1 C5 A DG 7 ? ? C6 A DG 7 ? ? N1 A DG 7 ? ? 116.90 111.50 5.40 0.50 N
58 1 N1 A DG 7 ? ? C2 A DG 7 ? ? N2 A DG 7 ? ? 122.73 116.20 6.53 0.90 N
59 1 N3 A DG 7 ? ? C2 A DG 7 ? ? N2 A DG 7 ? ? 108.53 119.90 -11.37 0.70 N
60 1 C5 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 122.43 128.60 -6.17 0.60 N
61 1 "C3'" A DG 7 ? ? "O3'" A DG 7 ? ? P A DC 8 ? ? 134.82 119.70 15.12 1.20 Y
62 1 P A DC 8 ? ? "O5'" A DC 8 ? ? "C5'" A DC 8 ? ? 103.72 120.90 -17.18 1.60 N
63 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? "C2'" A DC 8 ? ? 100.38 105.90 -5.52 0.80 N
64 1 C2 A DC 8 ? ? N3 A DC 8 ? ? C4 A DC 8 ? ? 124.56 119.90 4.66 0.50 N
65 1 N3 A DC 8 ? ? C4 A DC 8 ? ? C5 A DC 8 ? ? 117.74 121.90 -4.16 0.40 N
66 1 C5 A DC 8 ? ? C6 A DC 8 ? ? N1 A DC 8 ? ? 124.80 121.00 3.80 0.50 N
67 1 N1 A DC 8 ? ? C2 A DC 8 ? ? O2 A DC 8 ? ? 126.52 118.90 7.62 0.60 N
68 1 N3 A DC 8 ? ? C2 A DC 8 ? ? O2 A DC 8 ? ? 116.99 121.90 -4.91 0.70 N
69 1 C5 A DC 8 ? ? C4 A DC 8 ? ? N4 A DC 8 ? ? 125.38 120.20 5.18 0.70 N
70 1 CB B DSN 1 ? ? CA B DSN 1 ? ? C B DSN 1 ? ? 125.58 110.10 15.48 1.90 N
71 1 N B DSN 1 ? ? CA B DSN 1 ? ? CB B DSN 1 ? ? 100.19 110.50 -10.31 1.50 N
72 1 N B ALA 2 ? ? CA B ALA 2 ? ? CB B ALA 2 ? ? 118.54 110.10 8.44 1.40 N
73 1 O B ALA 2 ? ? C B ALA 2 ? ? N B NCY 3 ? ? 139.06 122.70 16.36 1.60 Y
74 1 CB B ALA 6 ? ? CA B ALA 6 ? ? C B ALA 6 ? ? 100.25 110.10 -9.85 1.50 N
#
_pdbx_molecule_features.prd_id PRD_000488
_pdbx_molecule_features.name 'TRIOSTIN A'
_pdbx_molecule_features.type 'Cyclic depsipeptide'
_pdbx_molecule_features.class Anticancer
_pdbx_molecule_features.details
;TRIOSTIN IS A BICYCLIC OCTADEPSIPEPTIDE.
BICYCLIZATION IS ACHIEVED BY LINKING THE N- AND
THE C- TERMINI, AND A DISULPHIDE BOND BETWEEN
RESIDUES 3 AND 7.
THE TWO QUINOXALINE CHROMOPHORES ARE LINKED
TO THE D-SERINE RESIDUES, RESIDUES 1 AND 5.
;
#
loop_
_pdbx_molecule.instance_id
_pdbx_molecule.prd_id
_pdbx_molecule.asym_id
1 PRD_000488 B
1 PRD_000488 C
1 PRD_000488 D
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text BIS-INTERCALATION
#
_refine_B_iso.class 'ALL ATOMS'
_refine_B_iso.details TR
_refine_B_iso.treatment isotropic
_refine_B_iso.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_occupancy.class 'ALL ATOMS'
_refine_occupancy.treatment fix
_refine_occupancy.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_pdbx_entry_details.entry_id 1VS2
_pdbx_entry_details.compound_details
;TRIOSTIN IS A BICYCLIC OCTADEPSIPEPTIDE, A MEMBER
OF THE QUINOXALINE CLASS OF ANTIBIOTICS.
HERE, TRIOSTIN IS REPRESENTED BY GROUPING TOGETHER THE
SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) QUI
;
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
DA OP3 O N N 14
DA P P N N 15
DA OP1 O N N 16
DA OP2 O N N 17
DA "O5'" O N N 18
DA "C5'" C N N 19
DA "C4'" C N R 20
DA "O4'" O N N 21
DA "C3'" C N S 22
DA "O3'" O N N 23
DA "C2'" C N N 24
DA "C1'" C N R 25
DA N9 N Y N 26
DA C8 C Y N 27
DA N7 N Y N 28
DA C5 C Y N 29
DA C6 C Y N 30
DA N6 N N N 31
DA N1 N Y N 32
DA C2 C Y N 33
DA N3 N Y N 34
DA C4 C Y N 35
DA HOP3 H N N 36
DA HOP2 H N N 37
DA "H5'" H N N 38
DA "H5''" H N N 39
DA "H4'" H N N 40
DA "H3'" H N N 41
DA "HO3'" H N N 42
DA "H2'" H N N 43
DA "H2''" H N N 44
DA "H1'" H N N 45
DA H8 H N N 46
DA H61 H N N 47
DA H62 H N N 48
DA H2 H N N 49
DC OP3 O N N 50
DC P P N N 51
DC OP1 O N N 52
DC OP2 O N N 53
DC "O5'" O N N 54
DC "C5'" C N N 55
DC "C4'" C N R 56
DC "O4'" O N N 57
DC "C3'" C N S 58
DC "O3'" O N N 59
DC "C2'" C N N 60
DC "C1'" C N R 61
DC N1 N N N 62
DC C2 C N N 63
DC O2 O N N 64
DC N3 N N N 65
DC C4 C N N 66
DC N4 N N N 67
DC C5 C N N 68
DC C6 C N N 69
DC HOP3 H N N 70
DC HOP2 H N N 71
DC "H5'" H N N 72
DC "H5''" H N N 73
DC "H4'" H N N 74
DC "H3'" H N N 75
DC "HO3'" H N N 76
DC "H2'" H N N 77
DC "H2''" H N N 78
DC "H1'" H N N 79
DC H41 H N N 80
DC H42 H N N 81
DC H5 H N N 82
DC H6 H N N 83
DG OP3 O N N 84
DG P P N N 85
DG OP1 O N N 86
DG OP2 O N N 87
DG "O5'" O N N 88
DG "C5'" C N N 89
DG "C4'" C N R 90
DG "O4'" O N N 91
DG "C3'" C N S 92
DG "O3'" O N N 93
DG "C2'" C N N 94
DG "C1'" C N R 95
DG N9 N Y N 96
DG C8 C Y N 97
DG N7 N Y N 98
DG C5 C Y N 99
DG C6 C N N 100
DG O6 O N N 101
DG N1 N N N 102
DG C2 C N N 103
DG N2 N N N 104
DG N3 N N N 105
DG C4 C Y N 106
DG HOP3 H N N 107
DG HOP2 H N N 108
DG "H5'" H N N 109
DG "H5''" H N N 110
DG "H4'" H N N 111
DG "H3'" H N N 112
DG "HO3'" H N N 113
DG "H2'" H N N 114
DG "H2''" H N N 115
DG "H1'" H N N 116
DG H8 H N N 117
DG H1 H N N 118
DG H21 H N N 119
DG H22 H N N 120
DSN N N N N 121
DSN CA C N R 122
DSN C C N N 123
DSN O O N N 124
DSN OXT O N N 125
DSN CB C N N 126
DSN OG O N N 127
DSN H H N N 128
DSN H2 H N N 129
DSN HA H N N 130
DSN HXT H N N 131
DSN HB2 H N N 132
DSN HB3 H N N 133
DSN HG H N N 134
DT OP3 O N N 135
DT P P N N 136
DT OP1 O N N 137
DT OP2 O N N 138
DT "O5'" O N N 139
DT "C5'" C N N 140
DT "C4'" C N R 141
DT "O4'" O N N 142
DT "C3'" C N S 143
DT "O3'" O N N 144
DT "C2'" C N N 145
DT "C1'" C N R 146
DT N1 N N N 147
DT C2 C N N 148
DT O2 O N N 149
DT N3 N N N 150
DT C4 C N N 151
DT O4 O N N 152
DT C5 C N N 153
DT C7 C N N 154
DT C6 C N N 155
DT HOP3 H N N 156
DT HOP2 H N N 157
DT "H5'" H N N 158
DT "H5''" H N N 159
DT "H4'" H N N 160
DT "H3'" H N N 161
DT "HO3'" H N N 162
DT "H2'" H N N 163
DT "H2''" H N N 164
DT "H1'" H N N 165
DT H3 H N N 166
DT H71 H N N 167
DT H72 H N N 168
DT H73 H N N 169
DT H6 H N N 170
MVA N N N N 171
MVA CN C N N 172
MVA CA C N S 173
MVA CB C N N 174
MVA CG1 C N N 175
MVA CG2 C N N 176
MVA C C N N 177
MVA O O N N 178
MVA OXT O N N 179
MVA H H N N 180
MVA HN1 H N N 181
MVA HN2 H N N 182
MVA HN3 H N N 183
MVA HA H N N 184
MVA HB H N N 185
MVA HG11 H N N 186
MVA HG12 H N N 187
MVA HG13 H N N 188
MVA HG21 H N N 189
MVA HG22 H N N 190
MVA HG23 H N N 191
MVA HXT H N N 192
NCY N N N N 193
NCY CA C N R 194
NCY CB C N N 195
NCY SG S N N 196
NCY CN C N N 197
NCY C C N N 198
NCY O O N N 199
NCY OXT O N N 200
NCY H H N N 201
NCY HA H N N 202
NCY HB2 H N N 203
NCY HB3 H N N 204
NCY HG H N N 205
NCY HCN1 H N N 206
NCY HCN2 H N N 207
NCY HCN3 H N N 208
NCY HXT H N N 209
QUI N1 N Y N 210
QUI C2 C Y N 211
QUI C3 C Y N 212
QUI N4 N Y N 213
QUI C5 C Y N 214
QUI C6 C Y N 215
QUI C7 C Y N 216
QUI C8 C Y N 217
QUI C9 C Y N 218
QUI C10 C Y N 219
QUI C C N N 220
QUI O1 O N N 221
QUI O2 O N N 222
QUI H3 H N N 223
QUI H5 H N N 224
QUI H6 H N N 225
QUI H7 H N N 226
QUI H8 H N N 227
QUI HO2 H N N 228
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
DA OP3 P sing N N 13
DA OP3 HOP3 sing N N 14
DA P OP1 doub N N 15
DA P OP2 sing N N 16
DA P "O5'" sing N N 17
DA OP2 HOP2 sing N N 18
DA "O5'" "C5'" sing N N 19
DA "C5'" "C4'" sing N N 20
DA "C5'" "H5'" sing N N 21
DA "C5'" "H5''" sing N N 22
DA "C4'" "O4'" sing N N 23
DA "C4'" "C3'" sing N N 24
DA "C4'" "H4'" sing N N 25
DA "O4'" "C1'" sing N N 26
DA "C3'" "O3'" sing N N 27
DA "C3'" "C2'" sing N N 28
DA "C3'" "H3'" sing N N 29
DA "O3'" "HO3'" sing N N 30
DA "C2'" "C1'" sing N N 31
DA "C2'" "H2'" sing N N 32
DA "C2'" "H2''" sing N N 33
DA "C1'" N9 sing N N 34
DA "C1'" "H1'" sing N N 35
DA N9 C8 sing Y N 36
DA N9 C4 sing Y N 37
DA C8 N7 doub Y N 38
DA C8 H8 sing N N 39
DA N7 C5 sing Y N 40
DA C5 C6 sing Y N 41
DA C5 C4 doub Y N 42
DA C6 N6 sing N N 43
DA C6 N1 doub Y N 44
DA N6 H61 sing N N 45
DA N6 H62 sing N N 46
DA N1 C2 sing Y N 47
DA C2 N3 doub Y N 48
DA C2 H2 sing N N 49
DA N3 C4 sing Y N 50
DC OP3 P sing N N 51
DC OP3 HOP3 sing N N 52
DC P OP1 doub N N 53
DC P OP2 sing N N 54
DC P "O5'" sing N N 55
DC OP2 HOP2 sing N N 56
DC "O5'" "C5'" sing N N 57
DC "C5'" "C4'" sing N N 58
DC "C5'" "H5'" sing N N 59
DC "C5'" "H5''" sing N N 60
DC "C4'" "O4'" sing N N 61
DC "C4'" "C3'" sing N N 62
DC "C4'" "H4'" sing N N 63
DC "O4'" "C1'" sing N N 64
DC "C3'" "O3'" sing N N 65
DC "C3'" "C2'" sing N N 66
DC "C3'" "H3'" sing N N 67
DC "O3'" "HO3'" sing N N 68
DC "C2'" "C1'" sing N N 69
DC "C2'" "H2'" sing N N 70
DC "C2'" "H2''" sing N N 71
DC "C1'" N1 sing N N 72
DC "C1'" "H1'" sing N N 73
DC N1 C2 sing N N 74
DC N1 C6 sing N N 75
DC C2 O2 doub N N 76
DC C2 N3 sing N N 77
DC N3 C4 doub N N 78
DC C4 N4 sing N N 79
DC C4 C5 sing N N 80
DC N4 H41 sing N N 81
DC N4 H42 sing N N 82
DC C5 C6 doub N N 83
DC C5 H5 sing N N 84
DC C6 H6 sing N N 85
DG OP3 P sing N N 86
DG OP3 HOP3 sing N N 87
DG P OP1 doub N N 88
DG P OP2 sing N N 89
DG P "O5'" sing N N 90
DG OP2 HOP2 sing N N 91
DG "O5'" "C5'" sing N N 92
DG "C5'" "C4'" sing N N 93
DG "C5'" "H5'" sing N N 94
DG "C5'" "H5''" sing N N 95
DG "C4'" "O4'" sing N N 96
DG "C4'" "C3'" sing N N 97
DG "C4'" "H4'" sing N N 98
DG "O4'" "C1'" sing N N 99
DG "C3'" "O3'" sing N N 100
DG "C3'" "C2'" sing N N 101
DG "C3'" "H3'" sing N N 102
DG "O3'" "HO3'" sing N N 103
DG "C2'" "C1'" sing N N 104
DG "C2'" "H2'" sing N N 105
DG "C2'" "H2''" sing N N 106
DG "C1'" N9 sing N N 107
DG "C1'" "H1'" sing N N 108
DG N9 C8 sing Y N 109
DG N9 C4 sing Y N 110
DG C8 N7 doub Y N 111
DG C8 H8 sing N N 112
DG N7 C5 sing Y N 113
DG C5 C6 sing N N 114
DG C5 C4 doub Y N 115
DG C6 O6 doub N N 116
DG C6 N1 sing N N 117
DG N1 C2 sing N N 118
DG N1 H1 sing N N 119
DG C2 N2 sing N N 120
DG C2 N3 doub N N 121
DG N2 H21 sing N N 122
DG N2 H22 sing N N 123
DG N3 C4 sing N N 124
DSN N CA sing N N 125
DSN N H sing N N 126
DSN N H2 sing N N 127
DSN CA C sing N N 128
DSN CA CB sing N N 129
DSN CA HA sing N N 130
DSN C O doub N N 131
DSN C OXT sing N N 132
DSN OXT HXT sing N N 133
DSN CB OG sing N N 134
DSN CB HB2 sing N N 135
DSN CB HB3 sing N N 136
DSN OG HG sing N N 137
DT OP3 P sing N N 138
DT OP3 HOP3 sing N N 139
DT P OP1 doub N N 140
DT P OP2 sing N N 141
DT P "O5'" sing N N 142
DT OP2 HOP2 sing N N 143
DT "O5'" "C5'" sing N N 144
DT "C5'" "C4'" sing N N 145
DT "C5'" "H5'" sing N N 146
DT "C5'" "H5''" sing N N 147
DT "C4'" "O4'" sing N N 148
DT "C4'" "C3'" sing N N 149
DT "C4'" "H4'" sing N N 150
DT "O4'" "C1'" sing N N 151
DT "C3'" "O3'" sing N N 152
DT "C3'" "C2'" sing N N 153
DT "C3'" "H3'" sing N N 154
DT "O3'" "HO3'" sing N N 155
DT "C2'" "C1'" sing N N 156
DT "C2'" "H2'" sing N N 157
DT "C2'" "H2''" sing N N 158
DT "C1'" N1 sing N N 159
DT "C1'" "H1'" sing N N 160
DT N1 C2 sing N N 161
DT N1 C6 sing N N 162
DT C2 O2 doub N N 163
DT C2 N3 sing N N 164
DT N3 C4 sing N N 165
DT N3 H3 sing N N 166
DT C4 O4 doub N N 167
DT C4 C5 sing N N 168
DT C5 C7 sing N N 169
DT C5 C6 doub N N 170
DT C7 H71 sing N N 171
DT C7 H72 sing N N 172
DT C7 H73 sing N N 173
DT C6 H6 sing N N 174
MVA N CN sing N N 175
MVA N CA sing N N 176
MVA N H sing N N 177
MVA CN HN1 sing N N 178
MVA CN HN2 sing N N 179
MVA CN HN3 sing N N 180
MVA CA CB sing N N 181
MVA CA C sing N N 182
MVA CA HA sing N N 183
MVA CB CG1 sing N N 184
MVA CB CG2 sing N N 185
MVA CB HB sing N N 186
MVA CG1 HG11 sing N N 187
MVA CG1 HG12 sing N N 188
MVA CG1 HG13 sing N N 189
MVA CG2 HG21 sing N N 190
MVA CG2 HG22 sing N N 191
MVA CG2 HG23 sing N N 192
MVA C O doub N N 193
MVA C OXT sing N N 194
MVA OXT HXT sing N N 195
NCY N CA sing N N 196
NCY N CN sing N N 197
NCY N H sing N N 198
NCY CA CB sing N N 199
NCY CA C sing N N 200
NCY CA HA sing N N 201
NCY CB SG sing N N 202
NCY CB HB2 sing N N 203
NCY CB HB3 sing N N 204
NCY SG HG sing N N 205
NCY CN HCN1 sing N N 206
NCY CN HCN2 sing N N 207
NCY CN HCN3 sing N N 208
NCY C O doub N N 209
NCY C OXT sing N N 210
NCY OXT HXT sing N N 211
QUI N1 C2 doub Y N 212
QUI N1 C9 sing Y N 213
QUI C2 C3 sing Y N 214
QUI C2 C sing N N 215
QUI C3 N4 doub Y N 216
QUI C3 H3 sing N N 217
QUI N4 C10 sing Y N 218
QUI C5 C6 doub Y N 219
QUI C5 C10 sing Y N 220
QUI C5 H5 sing N N 221
QUI C6 C7 sing Y N 222
QUI C6 H6 sing N N 223
QUI C7 C8 doub Y N 224
QUI C7 H7 sing N N 225
QUI C8 C9 sing Y N 226
QUI C8 H8 sing N N 227
QUI C9 C10 doub Y N 228
QUI C O1 doub N N 229
QUI C O2 sing N N 230
QUI O2 HO2 sing N N 231
#
_ndb_struct_conf_na.entry_id 1VS2
_ndb_struct_conf_na.feature 'double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 9_555 0.166 -3.186 -0.337 1.660 -5.202 63.416 1 A_DG1:DC8_A A 1 ? A 8 ? ? ?
1 A DC 2 1_555 A DG 7 9_555 0.136 -0.375 0.347 -12.700 -5.949 -1.084 2 A_DC2:DG7_A A 2 ? A 7 ? 19 1
1 A DG 3 1_555 A DC 6 9_555 0.104 -0.400 -0.135 8.076 -2.791 -6.603 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1
1 A DT 4 1_555 A DA 5 9_555 -0.377 3.294 -0.095 -1.594 7.371 -67.738 4 A_DT4:DA5_A A 4 ? A 5 ? 23 3
1 A DA 5 1_555 A DT 4 9_555 0.377 -3.294 0.095 1.594 -7.371 67.738 5 A_DA5:DT4_A A 5 ? A 4 ? 23 3
1 A DC 6 1_555 A DG 3 9_555 -0.104 -0.400 -0.135 -8.076 -2.791 -6.603 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1
1 A DG 7 1_555 A DC 2 9_555 -0.136 -0.375 0.347 12.700 -5.949 -1.084 7 A_DG7:DC2_A A 7 ? A 2 ? 19 1
1 A DC 8 1_555 A DG 1 9_555 -0.166 3.186 0.337 -1.660 5.202 -63.416 8 A_DC8:DG1_A A 8 ? A 1 ? ? ?
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 9_555 A DC 2 1_555 A DG 7 9_555 3.260 6.355 -1.133 -148.509 93.777 -92.614 -2.923 2.036 -1.259 -47.211
-74.765 -176.988 1 AA_DG1DC2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A DC 2 1_555 A DG 7 9_555 A DG 3 1_555 A DC 6 9_555 -0.659 1.400 3.126 2.341 2.344 8.513 3.605 9.319 3.104 15.062
-15.043 9.134 2 AA_DC2DG3:DC6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DG 3 1_555 A DC 6 9_555 A DT 4 1_555 A DA 5 9_555 0.197 0.329 6.803 -8.784 4.411 55.944 -0.165 -1.226 6.712 4.662
9.284 56.733 3 AA_DG3DT4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A DT 4 1_555 A DA 5 9_555 A DA 5 1_555 A DT 4 9_555 -3.147 5.147 0.000 154.480 -79.404 -180.000 -2.574 -1.573 0.000 39.702
77.240 -180.000 4 AA_DT4DA5:DT4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DA 5 1_555 A DT 4 9_555 A DC 6 1_555 A DG 3 9_555 3.166 6.022 -0.383 -150.290 79.817 -53.323 -2.936 1.746 -0.198 -41.177
-77.534 -171.218 5 AA_DA5DC6:DG3DT4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A DC 6 1_555 A DG 3 9_555 A DG 7 1_555 A DC 2 9_555 0.659 1.400 3.126 -2.341 2.344 8.513 3.605 -9.319 3.104 15.062
15.043 9.134 6 AA_DC6DG7:DC2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A DG 7 1_555 A DC 2 9_555 A DC 8 1_555 A DG 1 9_555 1.259 0.322 7.113 -3.013 3.153 64.541 0.013 -1.452 7.062 2.949
2.818 64.673 7 AA_DG7DC8:DG1DC2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_atom_sites.entry_id 1VS2
_atom_sites.fract_transf_matrix[1][1] 0.024450
_atom_sites.fract_transf_matrix[1][2] 0.014116
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.028232
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.012392
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
S
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? -12.495 21.663 -20.716 1.00 7.63 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? -11.344 21.036 -20.159 1.00 7.13 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? -11.763 19.736 -19.505 1.00 6.85 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? -10.691 18.822 -19.610 1.00 6.20 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? -12.070 19.786 -17.956 1.00 7.42 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? -13.205 18.968 -17.673 1.00 8.64 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? -10.896 19.198 -17.302 1.00 6.30 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? -10.018 18.514 -18.383 1.00 4.71 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? -8.726 19.053 -18.392 1.00 3.62 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? -7.567 18.390 -18.553 1.00 3.27 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? -6.491 19.177 -18.545 1.00 3.07 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? -7.045 20.413 -18.343 1.00 2.97 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? -6.436 21.688 -18.238 1.00 2.94 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? -5.188 21.808 -18.335 1.00 3.37 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? -7.209 22.758 -18.045 1.00 2.83 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? -8.544 22.556 -17.980 1.00 3.09 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? -9.335 23.487 -17.778 1.00 2.89 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? -9.237 21.419 -18.085 1.00 3.09 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? -8.397 20.388 -18.246 1.00 2.97 ? 1 DG A C4 1
ATOM 20 P P . DC A 1 2 ? -14.319 19.573 -16.713 1.00 9.66 ? 2 DC A P 1
ATOM 21 O OP1 . DC A 1 2 ? -15.389 18.564 -16.665 1.00 9.72 ? 2 DC A OP1 1
ATOM 22 O OP2 . DC A 1 2 ? -14.425 20.948 -17.036 1.00 9.66 ? 2 DC A OP2 1
ATOM 23 O "O5'" . DC A 1 2 ? -13.511 19.846 -15.285 1.00 9.42 ? 2 DC A "O5'" 1
ATOM 24 C "C5'" . DC A 1 2 ? -14.356 19.800 -14.155 1.00 8.66 ? 2 DC A "C5'" 1
ATOM 25 C "C4'" . DC A 1 2 ? -13.853 18.695 -13.203 1.00 7.77 ? 2 DC A "C4'" 1
ATOM 26 O "O4'" . DC A 1 2 ? -12.425 18.688 -13.009 1.00 6.86 ? 2 DC A "O4'" 1
ATOM 27 C "C3'" . DC A 1 2 ? -14.483 18.865 -11.774 1.00 7.52 ? 2 DC A "C3'" 1
ATOM 28 O "O3'" . DC A 1 2 ? -15.675 18.068 -11.774 1.00 8.00 ? 2 DC A "O3'" 1
ATOM 29 C "C2'" . DC A 1 2 ? -13.415 18.489 -10.838 1.00 6.65 ? 2 DC A "C2'" 1
ATOM 30 C "C1'" . DC A 1 2 ? -12.098 18.404 -11.629 1.00 5.20 ? 2 DC A "C1'" 1
ATOM 31 N N1 . DC A 1 2 ? -11.076 19.460 -11.411 1.00 4.11 ? 2 DC A N1 1
ATOM 32 C C2 . DC A 1 2 ? -9.773 19.067 -11.467 1.00 3.51 ? 2 DC A C2 1
ATOM 33 O O2 . DC A 1 2 ? -9.452 17.909 -11.645 1.00 3.38 ? 2 DC A O2 1
ATOM 34 N N3 . DC A 1 2 ? -8.836 20.052 -11.282 1.00 3.26 ? 2 DC A N3 1
ATOM 35 C C4 . DC A 1 2 ? -9.129 21.380 -11.096 1.00 3.49 ? 2 DC A C4 1
ATOM 36 N N4 . DC A 1 2 ? -8.151 22.329 -10.919 1.00 3.49 ? 2 DC A N4 1
ATOM 37 C C5 . DC A 1 2 ? -10.505 21.752 -11.064 1.00 3.87 ? 2 DC A C5 1
ATOM 38 C C6 . DC A 1 2 ? -11.415 20.792 -11.233 1.00 3.87 ? 2 DC A C6 1
ATOM 39 P P . DG A 1 3 ? -16.747 18.599 -10.701 1.00 8.53 ? 3 DG A P 1
ATOM 40 O OP1 . DG A 1 3 ? -17.998 17.905 -10.999 1.00 8.04 ? 3 DG A OP1 1
ATOM 41 O OP2 . DG A 1 3 ? -16.550 20.002 -10.604 1.00 8.36 ? 3 DG A OP2 1
ATOM 42 O "O5'" . DG A 1 3 ? -16.061 18.114 -9.240 1.00 7.98 ? 3 DG A "O5'" 1
ATOM 43 C "C5'" . DG A 1 3 ? -15.691 16.701 -9.410 1.00 7.29 ? 3 DG A "C5'" 1
ATOM 44 C "C4'" . DG A 1 3 ? -14.851 15.968 -8.425 1.00 6.18 ? 3 DG A "C4'" 1
ATOM 45 O "O4'" . DG A 1 3 ? -13.442 16.290 -8.457 1.00 5.83 ? 3 DG A "O4'" 1
ATOM 46 C "C3'" . DG A 1 3 ? -15.082 16.205 -6.868 1.00 6.19 ? 3 DG A "C3'" 1
ATOM 47 O "O3'" . DG A 1 3 ? -14.548 15.004 -6.359 1.00 6.83 ? 3 DG A "O3'" 1
ATOM 48 C "C2'" . DG A 1 3 ? -14.254 17.406 -6.561 1.00 5.39 ? 3 DG A "C2'" 1
ATOM 49 C "C1'" . DG A 1 3 ? -12.906 16.956 -7.287 1.00 4.43 ? 3 DG A "C1'" 1
ATOM 50 N N9 . DG A 1 3 ? -12.027 18.054 -7.416 1.00 3.72 ? 3 DG A N9 1
ATOM 51 C C8 . DG A 1 3 ? -12.331 19.354 -7.223 1.00 3.26 ? 3 DG A C8 1
ATOM 52 N N7 . DG A 1 3 ? -11.307 20.186 -7.368 1.00 2.87 ? 3 DG A N7 1
ATOM 53 C C5 . DG A 1 3 ? -10.282 19.347 -7.658 1.00 2.55 ? 3 DG A C5 1
ATOM 54 C C6 . DG A 1 3 ? -8.910 19.626 -7.941 1.00 2.35 ? 3 DG A C6 1
ATOM 55 O O6 . DG A 1 3 ? -8.464 20.810 -7.892 1.00 2.16 ? 3 DG A O6 1
ATOM 56 N N1 . DG A 1 3 ? -8.110 18.596 -8.207 1.00 2.00 ? 3 DG A N1 1
ATOM 57 C C2 . DG A 1 3 ? -8.618 17.356 -8.215 1.00 2.32 ? 3 DG A C2 1
ATOM 58 N N2 . DG A 1 3 ? -7.898 16.378 -8.449 1.00 2.30 ? 3 DG A N2 1
ATOM 59 N N3 . DG A 1 3 ? -9.892 16.984 -7.981 1.00 2.76 ? 3 DG A N3 1
ATOM 60 C C4 . DG A 1 3 ? -10.663 18.043 -7.715 1.00 2.75 ? 3 DG A C4 1
ATOM 61 P P . DT A 1 4 ? -15.288 14.126 -5.262 1.00 6.63 ? 4 DT A P 1
ATOM 62 O OP1 . DT A 1 4 ? -15.931 12.914 -5.778 1.00 6.50 ? 4 DT A OP1 1
ATOM 63 O OP2 . DT A 1 4 ? -15.902 15.188 -4.576 1.00 6.99 ? 4 DT A OP2 1
ATOM 64 O "O5'" . DT A 1 4 ? -14.031 13.662 -4.334 1.00 6.68 ? 4 DT A "O5'" 1
ATOM 65 C "C5'" . DT A 1 4 ? -13.364 12.677 -5.165 1.00 6.07 ? 4 DT A "C5'" 1
ATOM 66 C "C4'" . DT A 1 4 ? -12.832 11.650 -4.196 1.00 5.84 ? 4 DT A "C4'" 1
ATOM 67 O "O4'" . DT A 1 4 ? -11.777 12.287 -3.470 1.00 5.22 ? 4 DT A "O4'" 1
ATOM 68 C "C3'" . DT A 1 4 ? -13.783 11.179 -3.050 1.00 6.24 ? 4 DT A "C3'" 1
ATOM 69 O "O3'" . DT A 1 4 ? -13.352 9.886 -2.776 1.00 7.71 ? 4 DT A "O3'" 1
ATOM 70 C "C2'" . DT A 1 4 ? -13.587 12.121 -1.888 1.00 5.13 ? 4 DT A "C2'" 1
ATOM 71 C "C1'" . DT A 1 4 ? -12.176 12.751 -2.171 1.00 3.57 ? 4 DT A "C1'" 1
ATOM 72 N N1 . DT A 1 4 ? -12.014 14.235 -2.098 1.00 2.35 ? 4 DT A N1 1
ATOM 73 C C2 . DT A 1 4 ? -10.722 14.639 -1.945 1.00 2.00 ? 4 DT A C2 1
ATOM 74 O O2 . DT A 1 4 ? -9.781 13.867 -1.888 1.00 2.08 ? 4 DT A O2 1
ATOM 75 N N3 . DT A 1 4 ? -10.458 15.982 -1.840 1.00 2.00 ? 4 DT A N3 1
ATOM 76 C C4 . DT A 1 4 ? -11.468 16.931 -1.888 1.00 2.00 ? 4 DT A C4 1
ATOM 77 O O4 . DT A 1 4 ? -11.070 18.139 -1.775 1.00 2.00 ? 4 DT A O4 1
ATOM 78 C C5 . DT A 1 4 ? -12.881 16.566 -2.034 1.00 2.00 ? 4 DT A C5 1
ATOM 79 C C7 . DT A 1 4 ? -14.084 17.650 -2.098 1.00 2.06 ? 4 DT A C7 1
ATOM 80 C C6 . DT A 1 4 ? -13.000 15.199 -2.122 1.00 2.00 ? 4 DT A C6 1
ATOM 81 P P . DA A 1 5 ? -14.268 8.929 -1.913 1.00 8.89 ? 5 DA A P 1
ATOM 82 O OP1 . DA A 1 5 ? -14.096 7.633 -2.477 1.00 8.66 ? 5 DA A OP1 1
ATOM 83 O OP2 . DA A 1 5 ? -15.569 9.617 -1.792 1.00 8.99 ? 5 DA A OP2 1
ATOM 84 O "O5'" . DA A 1 5 ? -13.532 8.632 -0.460 1.00 8.25 ? 5 DA A "O5'" 1
ATOM 85 C "C5'" . DA A 1 5 ? -12.145 9.036 -0.549 1.00 7.39 ? 5 DA A "C5'" 1
ATOM 86 C "C4'" . DA A 1 5 ? -11.593 9.461 0.799 1.00 6.54 ? 5 DA A "C4'" 1
ATOM 87 O "O4'" . DA A 1 5 ? -10.693 10.566 0.654 1.00 5.37 ? 5 DA A "O4'" 1
ATOM 88 C "C3'" . DA A 1 5 ? -12.624 9.985 1.864 1.00 6.89 ? 5 DA A "C3'" 1
ATOM 89 O "O3'" . DA A 1 5 ? -13.295 8.915 2.494 1.00 8.14 ? 5 DA A "O3'" 1
ATOM 90 C "C2'" . DA A 1 5 ? -11.730 10.747 2.808 1.00 5.67 ? 5 DA A "C2'" 1
ATOM 91 C "C1'" . DA A 1 5 ? -10.620 11.317 1.840 1.00 3.83 ? 5 DA A "C1'" 1
ATOM 92 N N9 . DA A 1 5 ? -10.818 12.702 1.703 1.00 2.50 ? 5 DA A N9 1
ATOM 93 C C8 . DA A 1 5 ? -9.814 13.598 1.719 1.00 2.00 ? 5 DA A C8 1
ATOM 94 N N7 . DA A 1 5 ? -10.231 14.852 1.590 1.00 2.00 ? 5 DA A N7 1
ATOM 95 C C5 . DA A 1 5 ? -11.581 14.717 1.485 1.00 2.00 ? 5 DA A C5 1
ATOM 96 C C6 . DA A 1 5 ? -12.591 15.702 1.323 1.00 2.00 ? 5 DA A C6 1
ATOM 97 N N6 . DA A 1 5 ? -12.305 17.027 1.243 1.00 2.00 ? 5 DA A N6 1
ATOM 98 N N1 . DA A 1 5 ? -13.857 15.287 1.283 1.00 2.00 ? 5 DA A N1 1
ATOM 99 C C2 . DA A 1 5 ? -14.078 13.963 1.372 1.00 2.00 ? 5 DA A C2 1
ATOM 100 N N3 . DA A 1 5 ? -13.221 12.925 1.501 1.00 2.00 ? 5 DA A N3 1
ATOM 101 C C4 . DA A 1 5 ? -11.980 13.424 1.566 1.00 2.00 ? 5 DA A C4 1
ATOM 102 P P . DC A 1 6 ? -12.994 8.097 3.793 1.00 9.34 ? 6 DC A P 1
ATOM 103 O OP1 . DC A 1 6 ? -11.648 7.608 3.728 1.00 9.11 ? 6 DC A OP1 1
ATOM 104 O OP2 . DC A 1 6 ? -14.115 7.105 3.914 1.00 9.28 ? 6 DC A OP2 1
ATOM 105 O "O5'" . DC A 1 6 ? -12.894 9.022 5.149 1.00 8.70 ? 6 DC A "O5'" 1
ATOM 106 C "C5'" . DC A 1 6 ? -12.084 8.476 6.190 1.00 7.51 ? 6 DC A "C5'" 1
ATOM 107 C "C4'" . DC A 1 6 ? -12.479 8.777 7.610 1.00 6.32 ? 6 DC A "C4'" 1
ATOM 108 O "O4'" . DC A 1 6 ? -12.493 10.205 7.909 1.00 5.13 ? 6 DC A "O4'" 1
ATOM 109 C "C3'" . DC A 1 6 ? -13.892 8.179 8.005 1.00 6.50 ? 6 DC A "C3'" 1
ATOM 110 O "O3'" . DC A 1 6 ? -13.718 7.275 9.046 1.00 7.61 ? 6 DC A "O3'" 1
ATOM 111 C "C2'" . DC A 1 6 ? -14.746 9.390 8.296 1.00 5.05 ? 6 DC A "C2'" 1
ATOM 112 C "C1'" . DC A 1 6 ? -13.683 10.530 8.627 1.00 3.32 ? 6 DC A "C1'" 1
ATOM 113 N N1 . DC A 1 6 ? -14.160 11.937 8.457 1.00 2.00 ? 6 DC A N1 1
ATOM 114 C C2 . DC A 1 6 ? -13.215 12.914 8.385 1.00 2.00 ? 6 DC A C2 1
ATOM 115 O O2 . DC A 1 6 ? -12.006 12.741 8.409 1.00 2.00 ? 6 DC A O2 1
ATOM 116 N N3 . DC A 1 6 ? -13.687 14.200 8.280 1.00 2.00 ? 6 DC A N3 1
ATOM 117 C C4 . DC A 1 6 ? -15.012 14.554 8.223 1.00 2.00 ? 6 DC A C4 1
ATOM 118 N N4 . DC A 1 6 ? -15.434 15.851 8.086 1.00 2.00 ? 6 DC A N4 1
ATOM 119 C C5 . DC A 1 6 ? -15.963 13.495 8.312 1.00 2.00 ? 6 DC A C5 1
ATOM 120 C C6 . DC A 1 6 ? -15.491 12.280 8.425 1.00 2.00 ? 6 DC A C6 1
ATOM 121 P P . DG A 1 7 ? -14.626 6.227 9.813 1.00 8.33 ? 7 DG A P 1
ATOM 122 O OP1 . DG A 1 7 ? -14.483 4.902 9.168 1.00 8.11 ? 7 DG A OP1 1
ATOM 123 O OP2 . DG A 1 7 ? -15.863 6.889 9.999 1.00 8.16 ? 7 DG A OP2 1
ATOM 124 O "O5'" . DG A 1 7 ? -14.016 6.177 11.346 1.00 8.05 ? 7 DG A "O5'" 1
ATOM 125 C "C5'" . DG A 1 7 ? -14.767 6.599 12.492 1.00 6.81 ? 7 DG A "C5'" 1
ATOM 126 C "C4'" . DG A 1 7 ? -14.182 7.902 12.912 1.00 5.97 ? 7 DG A "C4'" 1
ATOM 127 O "O4'" . DG A 1 7 ? -14.955 9.085 12.476 1.00 4.90 ? 7 DG A "O4'" 1
ATOM 128 C "C3'" . DG A 1 7 ? -14.033 8.281 14.437 1.00 6.07 ? 7 DG A "C3'" 1
ATOM 129 O "O3'" . DG A 1 7 ? -13.344 7.251 15.083 1.00 6.79 ? 7 DG A "O3'" 1
ATOM 130 C "C2'" . DG A 1 7 ? -13.340 9.610 14.123 1.00 5.28 ? 7 DG A "C2'" 1
ATOM 131 C "C1'" . DG A 1 7 ? -13.947 10.144 12.807 1.00 3.63 ? 7 DG A "C1'" 1
ATOM 132 N N9 . DG A 1 7 ? -14.626 11.370 12.630 1.00 2.60 ? 7 DG A N9 1
ATOM 133 C C8 . DG A 1 7 ? -15.949 11.558 12.621 1.00 2.18 ? 7 DG A C8 1
ATOM 134 N N7 . DG A 1 7 ? -16.327 12.801 12.355 1.00 2.04 ? 7 DG A N7 1
ATOM 135 C C5 . DG A 1 7 ? -15.137 13.439 12.178 1.00 2.00 ? 7 DG A C5 1
ATOM 136 C C6 . DG A 1 7 ? -14.855 14.799 11.847 1.00 2.00 ? 7 DG A C6 1
ATOM 137 O O6 . DG A 1 7 ? -15.765 15.659 11.685 1.00 2.00 ? 7 DG A O6 1
ATOM 138 N N1 . DG A 1 7 ? -13.587 15.132 11.726 1.00 2.00 ? 7 DG A N1 1
ATOM 139 C C2 . DG A 1 7 ? -12.630 14.211 11.879 1.00 2.00 ? 7 DG A C2 1
ATOM 140 N N2 . DG A 1 7 ? -11.423 14.473 11.766 1.00 2.00 ? 7 DG A N2 1
ATOM 141 N N3 . DG A 1 7 ? -12.759 12.897 12.170 1.00 2.00 ? 7 DG A N3 1
ATOM 142 C C4 . DG A 1 7 ? -14.074 12.610 12.315 1.00 2.00 ? 7 DG A C4 1
ATOM 143 P P . DC A 1 8 ? -13.342 6.659 16.552 1.00 6.60 ? 8 DC A P 1
ATOM 144 O OP1 . DC A 1 8 ? -12.726 5.331 16.479 1.00 6.73 ? 8 DC A OP1 1
ATOM 145 O OP2 . DC A 1 8 ? -14.671 6.794 17.020 1.00 6.52 ? 8 DC A OP2 1
ATOM 146 O "O5'" . DC A 1 8 ? -12.472 7.725 17.439 1.00 6.55 ? 8 DC A "O5'" 1
ATOM 147 C "C5'" . DC A 1 8 ? -11.082 7.293 17.238 1.00 6.49 ? 8 DC A "C5'" 1
ATOM 148 C "C4'" . DC A 1 8 ? -10.225 8.338 17.932 1.00 6.55 ? 8 DC A "C4'" 1
ATOM 149 O "O4'" . DC A 1 8 ? -10.941 9.592 17.956 1.00 6.57 ? 8 DC A "O4'" 1
ATOM 150 C "C3'" . DC A 1 8 ? -9.896 8.079 19.457 1.00 6.74 ? 8 DC A "C3'" 1
ATOM 151 O "O3'" . DC A 1 8 ? -8.667 8.721 19.650 1.00 7.43 ? 8 DC A "O3'" 1
ATOM 152 C "C2'" . DC A 1 8 ? -11.084 8.713 20.127 1.00 6.45 ? 8 DC A "C2'" 1
ATOM 153 C "C1'" . DC A 1 8 ? -11.254 10.056 19.328 1.00 5.79 ? 8 DC A "C1'" 1
ATOM 154 N N1 . DC A 1 8 ? -12.599 10.715 19.199 1.00 5.28 ? 8 DC A N1 1
ATOM 155 C C2 . DC A 1 8 ? -12.634 12.078 19.126 1.00 5.04 ? 8 DC A C2 1
ATOM 156 O O2 . DC A 1 8 ? -11.683 12.833 19.215 1.00 4.88 ? 8 DC A O2 1
ATOM 157 N N3 . DC A 1 8 ? -13.867 12.649 18.956 1.00 4.94 ? 8 DC A N3 1
ATOM 158 C C4 . DC A 1 8 ? -15.045 11.947 18.860 1.00 5.26 ? 8 DC A C4 1
ATOM 159 N N4 . DC A 1 8 ? -16.192 12.681 18.690 1.00 5.48 ? 8 DC A N4 1
ATOM 160 C C5 . DC A 1 8 ? -14.976 10.538 18.908 1.00 5.26 ? 8 DC A C5 1
ATOM 161 C C6 . DC A 1 8 ? -13.769 9.999 19.069 1.00 5.21 ? 8 DC A C6 1
HETATM 162 N N . DSN B 2 1 ? -4.691 16.662 -15.099 1.00 5.93 ? 1 DSN B N 1
HETATM 163 C CA . DSN B 2 1 ? -5.078 15.433 -15.680 1.00 8.19 ? 1 DSN B CA 1
HETATM 164 C C . DSN B 2 1 ? -4.849 14.313 -14.687 1.00 9.14 ? 1 DSN B C 1
HETATM 165 O O . DSN B 2 1 ? -4.845 13.137 -15.147 1.00 9.06 ? 1 DSN B O 1
HETATM 166 C CB . DSN B 2 1 ? -6.354 15.808 -16.245 1.00 8.93 ? 1 DSN B CB 1
HETATM 167 O OG . DSN B 2 1 ? -7.626 15.192 -15.849 1.00 10.67 ? 1 DSN B OG 1
ATOM 168 N N . ALA B 2 2 ? -4.491 14.784 -13.372 1.00 10.51 ? 2 ALA B N 1
ATOM 169 C CA . ALA B 2 2 ? -3.892 13.980 -12.347 1.00 11.65 ? 2 ALA B CA 1
ATOM 170 C C . ALA B 2 2 ? -5.053 13.562 -11.379 1.00 12.04 ? 2 ALA B C 1
ATOM 171 O O . ALA B 2 2 ? -5.941 14.462 -11.346 1.00 11.88 ? 2 ALA B O 1
ATOM 172 C CB . ALA B 2 2 ? -2.900 14.622 -11.419 1.00 11.79 ? 2 ALA B CB 1
HETATM 173 N N . NCY B 2 3 ? -4.851 12.255 -10.911 1.00 12.90 ? 3 NCY B N 1
HETATM 174 C CA . NCY B 2 3 ? -5.994 11.501 -10.370 1.00 13.63 ? 3 NCY B CA 1
HETATM 175 C CB . NCY B 2 3 ? -6.344 10.286 -11.217 1.00 14.33 ? 3 NCY B CB 1
HETATM 176 S SG . NCY B 2 3 ? -7.665 10.761 -12.452 1.00 15.74 ? 3 NCY B SG 1
HETATM 177 C CN . NCY B 2 3 ? -3.544 11.565 -10.838 1.00 12.71 ? 3 NCY B CN 1
HETATM 178 C C . NCY B 2 3 ? -5.701 11.094 -8.901 1.00 13.71 ? 3 NCY B C 1
HETATM 179 O O . NCY B 2 3 ? -5.401 9.865 -8.691 1.00 13.77 ? 3 NCY B O 1
HETATM 180 N N . MVA B 2 4 ? -5.738 12.170 -7.981 1.00 13.48 ? 4 MVA B N 1
HETATM 181 C CN . MVA B 2 4 ? -5.967 13.601 -8.191 1.00 13.33 ? 4 MVA B CN 1
HETATM 182 C CA . MVA B 2 4 ? -5.313 11.809 -6.625 1.00 13.17 ? 4 MVA B CA 1
HETATM 183 C CB . MVA B 2 4 ? -4.104 12.599 -6.206 1.00 13.27 ? 4 MVA B CB 1
HETATM 184 C CG1 . MVA B 2 4 ? -2.832 12.032 -6.851 1.00 13.03 ? 4 MVA B CG1 1
HETATM 185 C CG2 . MVA B 2 4 ? -3.978 12.812 -4.713 1.00 13.06 ? 4 MVA B CG2 1
HETATM 186 C C . MVA B 2 4 ? -6.464 11.501 -5.778 1.00 13.12 ? 4 MVA B C 1
HETATM 187 O O . MVA B 2 4 ? -6.791 10.290 -5.520 1.00 13.36 ? 4 MVA B O 1
HETATM 188 N N . DSN B 2 5 ? -8.978 14.671 -5.431 1.00 6.95 ? 5 DSN B N 1
HETATM 189 C CA . DSN B 2 5 ? -9.838 13.577 -5.835 1.00 9.26 ? 5 DSN B CA 1
HETATM 190 C C . DSN B 2 5 ? -10.176 13.297 -7.295 1.00 10.20 ? 5 DSN B C 1
HETATM 191 O O . DSN B 2 5 ? -10.603 12.124 -7.618 1.00 9.99 ? 5 DSN B O 1
HETATM 192 C CB . DSN B 2 5 ? -9.180 12.309 -5.286 1.00 9.93 ? 5 DSN B CB 1
HETATM 193 O OG . DSN B 2 5 ? -7.691 12.372 -5.673 1.00 11.86 ? 5 DSN B OG 1
ATOM 194 N N . ALA B 2 6 ? -10.237 14.388 -8.207 1.00 10.96 ? 6 ALA B N 1
ATOM 195 C CA . ALA B 2 6 ? -11.076 14.225 -9.385 1.00 12.18 ? 6 ALA B CA 1
ATOM 196 C C . ALA B 2 6 ? -10.354 13.329 -10.435 1.00 12.88 ? 6 ALA B C 1
ATOM 197 O O . ALA B 2 6 ? -9.090 13.300 -10.443 1.00 12.92 ? 6 ALA B O 1
ATOM 198 C CB . ALA B 2 6 ? -11.129 15.557 -10.152 1.00 12.46 ? 6 ALA B CB 1
HETATM 199 N N . NCY B 2 7 ? -11.092 12.851 -11.524 1.00 13.39 ? 7 NCY B N 1
HETATM 200 C CA . NCY B 2 7 ? -10.280 11.919 -12.315 1.00 13.73 ? 7 NCY B CA 1
HETATM 201 C CB . NCY B 2 7 ? -10.515 10.513 -11.855 1.00 14.26 ? 7 NCY B CB 1
HETATM 202 S SG . NCY B 2 7 ? -9.180 9.496 -12.613 1.00 15.58 ? 7 NCY B SG 1
HETATM 203 C CN . NCY B 2 7 ? -12.538 12.620 -11.589 1.00 13.57 ? 7 NCY B CN 1
HETATM 204 C C . NCY B 2 7 ? -10.297 12.351 -13.759 1.00 13.58 ? 7 NCY B C 1
HETATM 205 O O . NCY B 2 7 ? -11.096 11.809 -14.582 1.00 13.63 ? 7 NCY B O 1
HETATM 206 N N . MVA B 2 8 ? -9.683 13.598 -14.042 1.00 13.15 ? 8 MVA B N 1
HETATM 207 C CN . MVA B 2 8 ? -9.327 14.668 -13.098 1.00 12.92 ? 8 MVA B CN 1
HETATM 208 C CA . MVA B 2 8 ? -9.892 14.030 -15.422 1.00 12.43 ? 8 MVA B CA 1
HETATM 209 C CB . MVA B 2 8 ? -10.879 15.110 -15.478 1.00 12.57 ? 8 MVA B CB 1
HETATM 210 C CG1 . MVA B 2 8 ? -10.303 16.407 -15.995 1.00 12.78 ? 8 MVA B CG1 1
HETATM 211 C CG2 . MVA B 2 8 ? -12.252 14.753 -15.987 1.00 12.29 ? 8 MVA B CG2 1
HETATM 212 C C . MVA B 2 8 ? -8.573 14.055 -16.035 1.00 12.18 ? 8 MVA B C 1
HETATM 213 O O . MVA B 2 8 ? -7.892 13.017 -16.309 1.00 12.71 ? 8 MVA B O 1
HETATM 214 N N1 . QUI C 3 . ? -6.704 18.412 -15.220 1.00 2.00 ? 0 QUI B N1 1
HETATM 215 C C2 . QUI C 3 . ? -5.372 18.762 -15.381 1.00 2.12 ? 0 QUI B C2 1
HETATM 216 C C3 . QUI C 3 . ? -4.910 20.066 -15.293 1.00 2.00 ? 0 QUI B C3 1
HETATM 217 N N4 . QUI C 3 . ? -5.826 21.057 -15.042 1.00 2.00 ? 0 QUI B N4 1
HETATM 218 C C5 . QUI C 3 . ? -8.033 21.812 -14.631 1.00 2.00 ? 0 QUI B C5 1
HETATM 219 C C6 . QUI C 3 . ? -9.389 21.518 -14.478 1.00 2.00 ? 0 QUI B C6 1
HETATM 220 C C7 . QUI C 3 . ? -9.828 20.197 -14.550 1.00 2.00 ? 0 QUI B C7 1
HETATM 221 C C8 . QUI C 3 . ? -8.947 19.145 -14.808 1.00 2.00 ? 0 QUI B C8 1
HETATM 222 C C9 . QUI C 3 . ? -7.603 19.446 -14.978 1.00 2.00 ? 0 QUI B C9 1
HETATM 223 C C10 . QUI C 3 . ? -7.170 20.756 -14.889 1.00 2.00 ? 0 QUI B C10 1
HETATM 224 C C . QUI C 3 . ? -4.294 17.731 -15.664 1.00 3.94 ? 0 QUI B C 1
HETATM 225 O O1 . QUI C 3 . ? -3.117 18.157 -15.769 1.00 4.24 ? 0 QUI B O1 1
HETATM 226 N N1 . QUI D 3 . ? -7.258 16.708 -4.971 1.00 2.00 ? 9 QUI B N1 1
HETATM 227 C C2 . QUI D 3 . ? -8.628 16.998 -4.907 1.00 2.31 ? 9 QUI B C2 1
HETATM 228 C C3 . QUI D 3 . ? -9.080 18.298 -4.761 1.00 2.00 ? 9 QUI B C3 1
HETATM 229 N N4 . QUI D 3 . ? -8.127 19.340 -4.681 1.00 2.00 ? 9 QUI B N4 1
HETATM 230 C C5 . QUI D 3 . ? -5.828 20.076 -4.648 1.00 2.00 ? 9 QUI B C5 1
HETATM 231 C C6 . QUI D 3 . ? -4.462 19.779 -4.721 1.00 2.00 ? 9 QUI B C6 1
HETATM 232 C C7 . QUI D 3 . ? -4.025 18.454 -4.866 1.00 2.00 ? 9 QUI B C7 1
HETATM 233 C C8 . QUI D 3 . ? -4.975 17.445 -4.971 1.00 2.00 ? 9 QUI B C8 1
HETATM 234 C C9 . QUI D 3 . ? -6.327 17.746 -4.907 1.00 2.00 ? 9 QUI B C9 1
HETATM 235 C C10 . QUI D 3 . ? -6.759 19.053 -4.745 1.00 2.00 ? 9 QUI B C10 1
HETATM 236 C C . QUI D 3 . ? -9.542 15.819 -4.995 1.00 4.44 ? 9 QUI B C 1
HETATM 237 O O1 . QUI D 3 . ? -10.753 16.067 -5.124 1.00 4.90 ? 9 QUI B O1 1
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