data_1VJ4
#
_entry.id 1VJ4
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.386
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1VJ4 pdb_00001vj4 10.2210/pdb1vj4/pdb
RCSB ADH010 ? ?
WWPDB D_1000177054 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1989-01-11
2 'Structure model' 1 1 2008-05-22
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2018-04-18
5 'Structure model' 1 4 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' diffrn_detector
2 5 'Structure model' chem_comp_atom
3 5 'Structure model' chem_comp_bond
4 5 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_diffrn_detector.detector'
2 5 'Structure model' '_database_2.pdbx_DOI'
3 5 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1VJ4
_pdbx_database_status.recvd_initial_deposition_date 1989-01-11
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Shakked, Z.' 1
'Rabinovich, D.' 2
'Kennard, O.' 3
'Cruse, W.B.' 4
'Salisbury, S.A.' 5
'Viswamitra, M.A.' 6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'Sequence-dependent conformation of an A-DNA double helix: The crystal structure of the octamer d(G-G-T-A-T-A-C-C)'
J.Mol.Biol. 166 183 201 1983 JMOBAK UK 0022-2836 0070 ? 6854642 '10.1016/S0022-2836(83)80005-9'
1 'Crystalline A-DNA. The X-Ray Analysis of the Fragment d(G-G-T-A-T-A-C-C)'
Proc.R.Soc.London,Ser.B 213 479 487 1981 PRLBA4 UK 0080-4649 0338 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Shakked, Z.' 1 ?
primary 'Rabinovich, D.' 2 ?
primary 'Kennard, O.' 3 ?
primary 'Cruse, W.B.' 4 ?
primary 'Salisbury, S.A.' 5 ?
primary 'Viswamitra, M.A.' 6 ?
1 'Shakked, Z.' 7 ?
1 'Rabinovich, D.' 8 ?
1 'Cruse, W.B.T.' 9 ?
1 'Egert, E.' 10 ?
1 'Kennard, O.' 11 ?
1 'Sala, G.' 12 ?
1 'Salisbury, S.A.' 13 ?
1 'Viswamitra, M.A.' 14 ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description "5'-D(*GP*GP*TP*AP*TP*AP*CP*C)-3'"
_entity.formula_weight 2426.617
_entity.pdbx_number_of_molecules 2
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DT)(DA)(DT)(DA)(DC)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GGTATACC
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DG n
1 3 DT n
1 4 DA n
1 5 DT n
1 6 DA n
1 7 DC n
1 8 DC n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DT 3 3 3 DT T A . n
A 1 4 DA 4 4 4 DA A A . n
A 1 5 DT 5 5 5 DT T A . n
A 1 6 DA 6 6 6 DA A A . n
A 1 7 DC 7 7 7 DC C A . n
A 1 8 DC 8 8 8 DC C A . n
B 1 1 DG 1 9 9 DG G B . n
B 1 2 DG 2 10 10 DG G B . n
B 1 3 DT 3 11 11 DT T B . n
B 1 4 DA 4 12 12 DA A B . n
B 1 5 DT 5 13 13 DT T B . n
B 1 6 DA 6 14 14 DA A B . n
B 1 7 DC 7 15 15 DC C B . n
B 1 8 DC 8 16 16 DC C B . n
#
_software.name CORELS
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_cell.entry_id 1VJ4
_cell.length_a 44.970
_cell.length_b 44.970
_cell.length_c 41.756
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1VJ4
_symmetry.space_group_name_H-M 'P 61'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 169
#
_exptl.entry_id 1VJ4
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 49.09
_exptl_crystal.density_Matthews 2.42
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.90
_exptl_crystal_grow.pdbx_details 'pH 6.90, VAPOR DIFFUSION'
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 WATER ? ? ?
1 2 1 MPD ? ? ?
1 3 1 SPERMINE_HCL ? ? ?
1 4 1 BACL2 ? ? ?
1 5 1 'NA CACODYLATE' ? ? ?
1 6 2 WATER ? ? ?
1 7 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'ENRAF-NONIUS CAD4'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source ?
_diffrn_source.type ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_refine.entry_id 1VJ4
_refine.ls_number_reflns_obs 3251
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.000
_refine.ls_d_res_high 1.800
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.198
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 322
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 322
_refine_hist.d_res_high 1.800
_refine_hist.d_res_low 8.000
#
_database_PDB_matrix.entry_id 1VJ4
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1VJ4
_struct.title
'SEQUENCE-DEPENDENT CONFORMATION OF AN A-DNA DOUBLE HELIX: THE CRYSTAL STRUCTURE OF THE OCTAMER D(G-G-T-A-T-A-C-C)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1VJ4
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1VJ4
_struct_ref.pdbx_db_accession 1VJ4
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1VJ4 A 1 ? 8 ? 1VJ4 1 ? 8 ? 1 8
2 1 1VJ4 B 1 ? 8 ? 1VJ4 9 ? 16 ? 9 16
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 1 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 1 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 1 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 2 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 2 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 2 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 3 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 3 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 4 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 4 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 5 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 5 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 6 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 6 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 7 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 7 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 7 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 8 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 8 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 8 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "O5'" A DG 1 ? ? "C5'" A DG 1 ? ? 1.693 1.440 0.253 0.016 N
2 1 "O4'" A DT 5 ? ? "C4'" A DT 5 ? ? 1.511 1.449 0.062 0.009 N
3 1 "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? 1.564 1.449 0.115 0.009 N
4 1 "O4'" A DC 7 ? ? "C4'" A DC 7 ? ? 1.533 1.449 0.084 0.009 N
5 1 "O4'" A DC 8 ? ? "C4'" A DC 8 ? ? 1.536 1.449 0.087 0.009 N
6 1 "O4'" B DG 9 ? ? "C4'" B DG 9 ? ? 1.515 1.449 0.066 0.009 N
7 1 "O4'" B DA 14 ? ? "C4'" B DA 14 ? ? 1.516 1.449 0.067 0.009 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DT 3 ? ? "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? 100.51 104.50 -3.99 0.40 N
2 1 "C3'" A DT 3 ? ? "O3'" A DT 3 ? ? P A DA 4 ? ? 112.40 119.70 -7.30 1.20 Y
3 1 "O4'" A DT 5 ? ? "C4'" A DT 5 ? ? "C3'" A DT 5 ? ? 99.91 104.50 -4.59 0.40 N
4 1 "O5'" A DA 6 ? ? "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 101.33 109.40 -8.07 0.80 N
5 1 "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? 98.60 104.50 -5.90 0.40 N
6 1 "O4'" A DC 7 ? ? "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? 99.33 104.50 -5.17 0.40 N
7 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.27 108.30 1.97 0.30 N
8 1 "O4'" A DC 8 ? ? "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 98.30 104.50 -6.20 0.40 N
9 1 "O4'" B DG 9 ? ? "C4'" B DG 9 ? ? "C3'" B DG 9 ? ? 101.10 104.50 -3.40 0.40 N
10 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 103.67 108.00 -4.33 0.70 N
11 1 "O4'" B DT 13 ? ? "C4'" B DT 13 ? ? "C3'" B DT 13 ? ? 101.40 104.50 -3.10 0.40 N
12 1 "O4'" B DA 14 ? ? "C4'" B DA 14 ? ? "C3'" B DA 14 ? ? 98.45 104.50 -6.05 0.40 N
13 1 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DC 16 ? ? 132.23 119.70 12.53 1.20 Y
14 1 "O5'" B DC 16 ? ? "C5'" B DC 16 ? ? "C4'" B DC 16 ? ? 104.30 109.40 -5.10 0.80 N
15 1 "C1'" B DC 16 ? ? "O4'" B DC 16 ? ? "C4'" B DC 16 ? ? 100.07 110.10 -10.03 1.00 N
16 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 99.99 108.00 -8.01 0.70 N
#
_pdbx_validate_planes.id 1
_pdbx_validate_planes.PDB_model_num 1
_pdbx_validate_planes.auth_comp_id DT
_pdbx_validate_planes.auth_asym_id B
_pdbx_validate_planes.auth_seq_id 11
_pdbx_validate_planes.PDB_ins_code ?
_pdbx_validate_planes.label_alt_id ?
_pdbx_validate_planes.rmsd 0.061
_pdbx_validate_planes.type 'SIDE CHAIN'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
#
_ndb_struct_conf_na.entry_id 1VJ4
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 B DC 8 1_555 -0.126 -0.234 -0.273 -5.391 -6.430 -4.062 1 A_DG1:DC16_B A 1 ? B 16 ? 19 1
1 A DG 2 1_555 B DC 7 1_555 -0.419 -0.224 -0.152 -9.710 -11.672 2.896 2 A_DG2:DC15_B A 2 ? B 15 ? 19 1
1 A DT 3 1_555 B DA 6 1_555 0.078 -0.164 0.191 -6.785 -8.085 -2.550 3 A_DT3:DA14_B A 3 ? B 14 ? 20 1
1 A DA 4 1_555 B DT 5 1_555 -0.150 -0.203 0.187 -2.648 -10.054 1.247 4 A_DA4:DT13_B A 4 ? B 13 ? 20 1
1 A DT 5 1_555 B DA 4 1_555 -0.065 -0.189 0.069 5.956 -9.705 2.970 5 A_DT5:DA12_B A 5 ? B 12 ? 20 1
1 A DA 6 1_555 B DT 3 1_555 -0.042 -0.138 -0.164 6.583 -16.533 0.307 6 A_DA6:DT11_B A 6 ? B 11 ? 20 1
1 A DC 7 1_555 B DG 2 1_555 0.547 -0.172 -0.234 12.127 -14.071 2.663 7 A_DC7:DG10_B A 7 ? B 10 ? 19 1
1 A DC 8 1_555 B DG 1 1_555 0.750 -0.229 -0.167 10.740 -0.401 -0.355 8 A_DC8:DG9_B A 8 ? B 9 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 B DC 8 1_555 A DG 2 1_555 B DC 7 1_555 0.257 -1.817 3.506 -0.965 7.287 32.161 -4.455 -0.618 3.024 12.944 1.714
32.969 1 AA_DG1DG2:DC15DC16_BB A 1 ? B 16 ? A 2 ? B 15 ?
1 A DG 2 1_555 B DC 7 1_555 A DT 3 1_555 B DA 6 1_555 -0.529 -1.338 3.322 -1.699 0.925 34.623 -2.389 0.623 3.308 1.553 2.853
34.676 2 AA_DG2DT3:DA14DC15_BB A 2 ? B 15 ? A 3 ? B 14 ?
1 A DT 3 1_555 B DA 6 1_555 A DA 4 1_555 B DT 5 1_555 0.253 -1.288 3.132 0.053 9.939 27.598 -4.461 -0.490 2.525 20.030 -0.108
29.300 3 AA_DT3DA4:DT13DA14_BB A 3 ? B 14 ? A 4 ? B 13 ?
1 A DA 4 1_555 B DT 5 1_555 A DT 5 1_555 B DA 4 1_555 0.306 -1.092 3.165 0.929 3.009 32.948 -2.401 -0.388 3.063 5.290 -1.634
33.094 4 AA_DA4DT5:DA12DT13_BB A 4 ? B 13 ? A 5 ? B 12 ?
1 A DT 5 1_555 B DA 4 1_555 A DA 6 1_555 B DT 3 1_555 -0.539 -1.453 3.272 -0.520 14.753 29.087 -4.917 0.879 2.296 27.271 0.962
32.547 5 AA_DT5DA6:DT11DA12_BB A 5 ? B 12 ? A 6 ? B 11 ?
1 A DA 6 1_555 B DT 3 1_555 A DC 7 1_555 B DG 2 1_555 0.511 -1.295 3.165 0.607 3.612 35.064 -2.648 -0.759 3.029 5.974 -1.004
35.249 6 AA_DA6DC7:DG10DT11_BB A 6 ? B 11 ? A 7 ? B 10 ?
1 A DC 7 1_555 B DG 2 1_555 A DC 8 1_555 B DG 1 1_555 -0.524 -1.856 3.463 -1.632 9.680 31.097 -4.964 0.655 2.798 17.517 2.954
32.574 7 AA_DC7DC8:DG9DG10_BB A 7 ? B 10 ? A 8 ? B 9 ?
#
_atom_sites.entry_id 1VJ4
_atom_sites.fract_transf_matrix[1][1] 0.022237
_atom_sites.fract_transf_matrix[1][2] 0.012839
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.025677
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.023949
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 25.997 20.127 -7.433 1.00 10.00 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 25.329 20.216 -8.986 1.00 10.00 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 26.325 20.150 -10.130 1.00 10.00 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 26.642 21.541 -10.594 1.00 10.00 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 27.661 19.480 -9.817 1.00 10.00 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 27.681 18.113 -10.209 1.00 10.00 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 28.637 20.259 -10.685 1.00 10.00 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 28.048 21.661 -10.648 1.00 10.00 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 28.504 22.436 -9.441 1.00 10.00 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 27.742 22.845 -8.364 1.00 10.00 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 28.412 23.500 -7.445 1.00 10.00 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 29.712 23.538 -7.946 1.00 10.00 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 30.876 24.115 -7.395 1.00 10.00 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 31.018 24.726 -6.334 1.00 10.00 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 31.989 23.916 -8.238 1.00 10.00 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 31.962 23.239 -9.445 1.00 10.00 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 33.125 23.149 -10.101 1.00 10.00 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 30.865 22.701 -9.967 1.00 10.00 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 29.777 22.888 -9.170 1.00 10.00 ? 1 DG A C4 1
ATOM 20 P P . DG A 1 2 ? 28.578 17.151 -9.261 1.00 10.00 ? 2 DG A P 1
ATOM 21 O OP1 . DG A 1 2 ? 28.448 15.742 -9.708 1.00 10.00 ? 2 DG A OP1 1
ATOM 22 O OP2 . DG A 1 2 ? 28.183 17.416 -7.850 1.00 10.00 ? 2 DG A OP2 1
ATOM 23 O "O5'" . DG A 1 2 ? 30.069 17.662 -9.495 1.00 10.00 ? 2 DG A "O5'" 1
ATOM 24 C "C5'" . DG A 1 2 ? 30.768 17.151 -10.660 1.00 10.00 ? 2 DG A "C5'" 1
ATOM 25 C "C4'" . DG A 1 2 ? 32.190 17.658 -10.610 1.00 10.00 ? 2 DG A "C4'" 1
ATOM 26 O "O4'" . DG A 1 2 ? 32.194 19.091 -10.355 1.00 10.00 ? 2 DG A "O4'" 1
ATOM 27 C "C3'" . DG A 1 2 ? 33.075 17.089 -9.504 1.00 10.00 ? 2 DG A "C3'" 1
ATOM 28 O "O3'" . DG A 1 2 ? 33.712 15.878 -9.900 1.00 10.00 ? 2 DG A "O3'" 1
ATOM 29 C "C2'" . DG A 1 2 ? 34.125 18.168 -9.320 1.00 10.00 ? 2 DG A "C2'" 1
ATOM 30 C "C1'" . DG A 1 2 ? 33.323 19.434 -9.575 1.00 10.00 ? 2 DG A "C1'" 1
ATOM 31 N N9 . DG A 1 2 ? 32.803 19.967 -8.289 1.00 10.00 ? 2 DG A N9 1
ATOM 32 C C8 . DG A 1 2 ? 31.519 20.010 -7.783 1.00 10.00 ? 2 DG A C8 1
ATOM 33 N N7 . DG A 1 2 ? 31.412 20.657 -6.648 1.00 10.00 ? 2 DG A N7 1
ATOM 34 C C5 . DG A 1 2 ? 32.709 21.081 -6.372 1.00 10.00 ? 2 DG A C5 1
ATOM 35 C C6 . DG A 1 2 ? 33.217 21.829 -5.278 1.00 10.00 ? 2 DG A C6 1
ATOM 36 O O6 . DG A 1 2 ? 32.621 22.284 -4.301 1.00 10.00 ? 2 DG A O6 1
ATOM 37 N N1 . DG A 1 2 ? 34.602 22.031 -5.399 1.00 10.00 ? 2 DG A N1 1
ATOM 38 C C2 . DG A 1 2 ? 35.385 21.564 -6.439 1.00 10.00 ? 2 DG A C2 1
ATOM 39 N N2 . DG A 1 2 ? 36.682 21.856 -6.372 1.00 10.00 ? 2 DG A N2 1
ATOM 40 N N3 . DG A 1 2 ? 34.906 20.867 -7.470 1.00 10.00 ? 2 DG A N3 1
ATOM 41 C C4 . DG A 1 2 ? 33.568 20.660 -7.374 1.00 10.00 ? 2 DG A C4 1
ATOM 42 P P . DT A 1 3 ? 33.919 14.717 -8.886 1.00 10.00 ? 3 DT A P 1
ATOM 43 O OP1 . DT A 1 3 ? 34.188 13.533 -9.742 1.00 10.00 ? 3 DT A OP1 1
ATOM 44 O OP2 . DT A 1 3 ? 32.828 14.558 -7.888 1.00 10.00 ? 3 DT A OP2 1
ATOM 45 O "O5'" . DT A 1 3 ? 35.254 15.161 -8.130 1.00 10.00 ? 3 DT A "O5'" 1
ATOM 46 C "C5'" . DT A 1 3 ? 36.417 15.508 -8.944 1.00 10.00 ? 3 DT A "C5'" 1
ATOM 47 C "C4'" . DT A 1 3 ? 37.514 16.053 -8.059 1.00 10.00 ? 3 DT A "C4'" 1
ATOM 48 O "O4'" . DT A 1 3 ? 37.071 17.420 -7.658 1.00 10.00 ? 3 DT A "O4'" 1
ATOM 49 C "C3'" . DT A 1 3 ? 37.674 15.395 -6.681 1.00 10.00 ? 3 DT A "C3'" 1
ATOM 50 O "O3'" . DT A 1 3 ? 38.553 14.277 -6.727 1.00 10.00 ? 3 DT A "O3'" 1
ATOM 51 C "C2'" . DT A 1 3 ? 38.308 16.493 -5.846 1.00 10.00 ? 3 DT A "C2'" 1
ATOM 52 C "C1'" . DT A 1 3 ? 37.617 17.736 -6.389 1.00 10.00 ? 3 DT A "C1'" 1
ATOM 53 N N1 . DT A 1 3 ? 36.475 18.156 -5.508 1.00 10.00 ? 3 DT A N1 1
ATOM 54 C C2 . DT A 1 3 ? 36.734 18.939 -4.393 1.00 10.00 ? 3 DT A C2 1
ATOM 55 O O2 . DT A 1 3 ? 37.847 19.356 -4.125 1.00 10.00 ? 3 DT A O2 1
ATOM 56 N N3 . DT A 1 3 ? 35.641 19.219 -3.599 1.00 10.00 ? 3 DT A N3 1
ATOM 57 C C4 . DT A 1 3 ? 34.350 18.799 -3.812 1.00 10.00 ? 3 DT A C4 1
ATOM 58 O O4 . DT A 1 3 ? 33.446 19.118 -3.027 1.00 10.00 ? 3 DT A O4 1
ATOM 59 C C5 . DT A 1 3 ? 34.177 17.985 -4.994 1.00 10.00 ? 3 DT A C5 1
ATOM 60 C C7 . DT A 1 3 ? 32.785 17.514 -5.265 1.00 10.00 ? 3 DT A C7 1
ATOM 61 C C6 . DT A 1 3 ? 35.223 17.693 -5.796 1.00 10.00 ? 3 DT A C6 1
ATOM 62 P P . DA A 1 4 ? 38.251 13.210 -5.558 1.00 10.00 ? 4 DA A P 1
ATOM 63 O OP1 . DA A 1 4 ? 39.052 12.011 -5.896 1.00 10.00 ? 4 DA A OP1 1
ATOM 64 O OP2 . DA A 1 4 ? 36.821 12.961 -5.245 1.00 10.00 ? 4 DA A OP2 1
ATOM 65 O "O5'" . DA A 1 4 ? 38.922 14.005 -4.343 1.00 10.00 ? 4 DA A "O5'" 1
ATOM 66 C "C5'" . DA A 1 4 ? 40.343 14.207 -4.322 1.00 10.00 ? 4 DA A "C5'" 1
ATOM 67 C "C4'" . DA A 1 4 ? 40.723 15.045 -3.119 1.00 10.00 ? 4 DA A "C4'" 1
ATOM 68 O "O4'" . DA A 1 4 ? 39.949 16.252 -3.090 1.00 10.00 ? 4 DA A "O4'" 1
ATOM 69 C "C3'" . DA A 1 4 ? 40.468 14.425 -1.741 1.00 10.00 ? 4 DA A "C3'" 1
ATOM 70 O "O3'" . DA A 1 4 ? 41.550 13.604 -1.311 1.00 10.00 ? 4 DA A "O3'" 1
ATOM 71 C "C2'" . DA A 1 4 ? 40.372 15.636 -0.827 1.00 10.00 ? 4 DA A "C2'" 1
ATOM 72 C "C1'" . DA A 1 4 ? 39.747 16.672 -1.750 1.00 10.00 ? 4 DA A "C1'" 1
ATOM 73 N N9 . DA A 1 4 ? 38.265 16.754 -1.591 1.00 10.00 ? 4 DA A N9 1
ATOM 74 C C8 . DA A 1 4 ? 37.273 16.174 -2.334 1.00 10.00 ? 4 DA A C8 1
ATOM 75 N N7 . DA A 1 4 ? 36.077 16.447 -1.904 1.00 10.00 ? 4 DA A N7 1
ATOM 76 C C5 . DA A 1 4 ? 36.300 17.245 -0.793 1.00 10.00 ? 4 DA A C5 1
ATOM 77 C C6 . DA A 1 4 ? 35.425 17.872 0.121 1.00 10.00 ? 4 DA A C6 1
ATOM 78 N N6 . DA A 1 4 ? 34.090 17.763 0.046 1.00 10.00 ? 4 DA A N6 1
ATOM 79 N N1 . DA A 1 4 ? 35.969 18.604 1.111 1.00 10.00 ? 4 DA A N1 1
ATOM 80 C C2 . DA A 1 4 ? 37.294 18.701 1.173 1.00 10.00 ? 4 DA A C2 1
ATOM 81 N N3 . DA A 1 4 ? 38.213 18.176 0.388 1.00 10.00 ? 4 DA A N3 1
ATOM 82 C C4 . DA A 1 4 ? 37.633 17.451 -0.589 1.00 10.00 ? 4 DA A C4 1
ATOM 83 P P . DT A 1 5 ? 41.215 12.314 -0.455 1.00 10.00 ? 5 DT A P 1
ATOM 84 O OP1 . DT A 1 5 ? 42.418 11.454 -0.514 1.00 10.00 ? 5 DT A OP1 1
ATOM 85 O OP2 . DT A 1 5 ? 39.942 11.668 -0.860 1.00 10.00 ? 5 DT A OP2 1
ATOM 86 O "O5'" . DT A 1 5 ? 41.051 12.934 1.019 1.00 10.00 ? 5 DT A "O5'" 1
ATOM 87 C "C5'" . DT A 1 5 ? 42.135 13.658 1.658 1.00 10.00 ? 5 DT A "C5'" 1
ATOM 88 C "C4'" . DT A 1 5 ? 41.633 14.379 2.894 1.00 10.00 ? 5 DT A "C4'" 1
ATOM 89 O "O4'" . DT A 1 5 ? 40.626 15.383 2.384 1.00 10.00 ? 5 DT A "O4'" 1
ATOM 90 C "C3'" . DT A 1 5 ? 40.745 13.572 3.837 1.00 10.00 ? 5 DT A "C3'" 1
ATOM 91 O "O3'" . DT A 1 5 ? 41.496 12.848 4.810 1.00 10.00 ? 5 DT A "O3'" 1
ATOM 92 C "C2'" . DT A 1 5 ? 39.931 14.647 4.543 1.00 10.00 ? 5 DT A "C2'" 1
ATOM 93 C "C1'" . DT A 1 5 ? 39.682 15.640 3.416 1.00 10.00 ? 5 DT A "C1'" 1
ATOM 94 N N1 . DT A 1 5 ? 38.332 15.391 2.814 1.00 10.00 ? 5 DT A N1 1
ATOM 95 C C2 . DT A 1 5 ? 37.251 16.010 3.395 1.00 10.00 ? 5 DT A C2 1
ATOM 96 O O2 . DT A 1 5 ? 37.352 16.770 4.347 1.00 10.00 ? 5 DT A O2 1
ATOM 97 N N3 . DT A 1 5 ? 36.030 15.718 2.823 1.00 10.00 ? 5 DT A N3 1
ATOM 98 C C4 . DT A 1 5 ? 35.801 14.877 1.754 1.00 10.00 ? 5 DT A C4 1
ATOM 99 O O4 . DT A 1 5 ? 34.658 14.690 1.328 1.00 10.00 ? 5 DT A O4 1
ATOM 100 C C5 . DT A 1 5 ? 36.992 14.270 1.211 1.00 10.00 ? 5 DT A C5 1
ATOM 101 C C7 . DT A 1 5 ? 36.794 13.350 0.038 1.00 10.00 ? 5 DT A C7 1
ATOM 102 C C6 . DT A 1 5 ? 38.200 14.538 1.741 1.00 10.00 ? 5 DT A C6 1
ATOM 103 P P . DA A 1 6 ? 40.806 11.613 5.533 1.00 10.00 ? 6 DA A P 1
ATOM 104 O OP1 . DA A 1 6 ? 41.917 10.858 6.155 1.00 10.00 ? 6 DA A OP1 1
ATOM 105 O OP2 . DA A 1 6 ? 39.958 10.846 4.581 1.00 10.00 ? 6 DA A OP2 1
ATOM 106 O "O5'" . DA A 1 6 ? 39.886 12.264 6.668 1.00 10.00 ? 6 DA A "O5'" 1
ATOM 107 C "C5'" . DA A 1 6 ? 40.705 13.051 7.662 1.00 10.00 ? 6 DA A "C5'" 1
ATOM 108 C "C4'" . DA A 1 6 ? 39.632 13.545 8.606 1.00 10.00 ? 6 DA A "C4'" 1
ATOM 109 O "O4'" . DA A 1 6 ? 38.739 14.398 7.646 1.00 10.00 ? 6 DA A "O4'" 1
ATOM 110 C "C3'" . DA A 1 6 ? 38.587 12.521 9.040 1.00 10.00 ? 6 DA A "C3'" 1
ATOM 111 O "O3'" . DA A 1 6 ? 38.951 11.851 10.251 1.00 10.00 ? 6 DA A "O3'" 1
ATOM 112 C "C2'" . DA A 1 6 ? 37.361 13.382 9.299 1.00 10.00 ? 6 DA A "C2'" 1
ATOM 113 C "C1'" . DA A 1 6 ? 37.415 14.363 8.130 1.00 10.00 ? 6 DA A "C1'" 1
ATOM 114 N N9 . DA A 1 6 ? 36.558 13.876 6.994 1.00 10.00 ? 6 DA A N9 1
ATOM 115 C C8 . DA A 1 6 ? 36.911 13.195 5.858 1.00 10.00 ? 6 DA A C8 1
ATOM 116 N N7 . DA A 1 6 ? 35.929 13.019 5.023 1.00 10.00 ? 6 DA A N7 1
ATOM 117 C C5 . DA A 1 6 ? 34.852 13.615 5.658 1.00 10.00 ? 6 DA A C5 1
ATOM 118 C C6 . DA A 1 6 ? 33.507 13.771 5.286 1.00 10.00 ? 6 DA A C6 1
ATOM 119 N N6 . DA A 1 6 ? 33.003 13.296 4.130 1.00 10.00 ? 6 DA A N6 1
ATOM 120 N N1 . DA A 1 6 ? 32.704 14.421 6.146 1.00 10.00 ? 6 DA A N1 1
ATOM 121 C C2 . DA A 1 6 ? 33.213 14.881 7.286 1.00 10.00 ? 6 DA A C2 1
ATOM 122 N N3 . DA A 1 6 ? 34.443 14.807 7.746 1.00 10.00 ? 6 DA A N3 1
ATOM 123 C C4 . DA A 1 6 ? 35.221 14.153 6.861 1.00 10.00 ? 6 DA A C4 1
ATOM 124 P P . DC A 1 7 ? 38.476 10.359 10.652 1.00 10.00 ? 7 DC A P 1
ATOM 125 O OP1 . DC A 1 7 ? 39.232 9.993 11.880 1.00 10.00 ? 7 DC A OP1 1
ATOM 126 O OP2 . DC A 1 7 ? 38.591 9.413 9.512 1.00 10.00 ? 7 DC A OP2 1
ATOM 127 O "O5'" . DC A 1 7 ? 36.932 10.574 11.007 1.00 10.00 ? 7 DC A "O5'" 1
ATOM 128 C "C5'" . DC A 1 7 ? 36.615 11.356 12.189 1.00 10.00 ? 7 DC A "C5'" 1
ATOM 129 C "C4'" . DC A 1 7 ? 35.133 11.625 12.214 1.00 10.00 ? 7 DC A "C4'" 1
ATOM 130 O "O4'" . DC A 1 7 ? 34.856 12.229 10.832 1.00 10.00 ? 7 DC A "O4'" 1
ATOM 131 C "C3'" . DC A 1 7 ? 34.222 10.406 12.138 1.00 10.00 ? 7 DC A "C3'" 1
ATOM 132 O "O3'" . DC A 1 7 ? 33.907 9.892 13.433 1.00 10.00 ? 7 DC A "O3'" 1
ATOM 133 C "C2'" . DC A 1 7 ? 32.959 10.967 11.500 1.00 10.00 ? 7 DC A "C2'" 1
ATOM 134 C "C1'" . DC A 1 7 ? 33.523 11.929 10.460 1.00 10.00 ? 7 DC A "C1'" 1
ATOM 135 N N1 . DC A 1 7 ? 33.487 11.353 9.078 1.00 10.00 ? 7 DC A N1 1
ATOM 136 C C2 . DC A 1 7 ? 32.322 11.516 8.330 1.00 10.00 ? 7 DC A C2 1
ATOM 137 O O2 . DC A 1 7 ? 31.333 12.022 8.873 1.00 10.00 ? 7 DC A O2 1
ATOM 138 N N3 . DC A 1 7 ? 32.311 11.107 7.032 1.00 10.00 ? 7 DC A N3 1
ATOM 139 C C4 . DC A 1 7 ? 33.399 10.562 6.472 1.00 10.00 ? 7 DC A C4 1
ATOM 140 N N4 . DC A 1 7 ? 33.334 10.184 5.199 1.00 10.00 ? 7 DC A N4 1
ATOM 141 C C5 . DC A 1 7 ? 34.602 10.379 7.220 1.00 10.00 ? 7 DC A C5 1
ATOM 142 C C6 . DC A 1 7 ? 34.593 10.799 8.522 1.00 10.00 ? 7 DC A C6 1
ATOM 143 P P . DC A 1 8 ? 33.622 8.299 13.541 1.00 10.00 ? 8 DC A P 1
ATOM 144 O OP1 . DC A 1 8 ? 33.808 7.976 14.986 1.00 10.00 ? 8 DC A OP1 1
ATOM 145 O OP2 . DC A 1 8 ? 34.496 7.555 12.598 1.00 10.00 ? 8 DC A OP2 1
ATOM 146 O "O5'" . DC A 1 8 ? 32.100 8.085 13.120 1.00 10.00 ? 8 DC A "O5'" 1
ATOM 147 C "C5'" . DC A 1 8 ? 31.072 8.798 13.759 1.00 10.00 ? 8 DC A "C5'" 1
ATOM 148 C "C4'" . DC A 1 8 ? 29.775 8.350 13.124 1.00 10.00 ? 8 DC A "C4'" 1
ATOM 149 O "O4'" . DC A 1 8 ? 29.761 9.012 11.738 1.00 10.00 ? 8 DC A "O4'" 1
ATOM 150 C "C3'" . DC A 1 8 ? 29.712 6.893 12.673 1.00 10.00 ? 8 DC A "C3'" 1
ATOM 151 O "O3'" . DC A 1 8 ? 29.289 6.029 13.725 1.00 10.00 ? 8 DC A "O3'" 1
ATOM 152 C "C2'" . DC A 1 8 ? 28.646 6.924 11.579 1.00 10.00 ? 8 DC A "C2'" 1
ATOM 153 C "C1'" . DC A 1 8 ? 28.936 8.245 10.882 1.00 10.00 ? 8 DC A "C1'" 1
ATOM 154 N N1 . DC A 1 8 ? 29.664 8.034 9.591 1.00 10.00 ? 8 DC A N1 1
ATOM 155 C C2 . DC A 1 8 ? 28.949 7.957 8.393 1.00 10.00 ? 8 DC A C2 1
ATOM 156 O O2 . DC A 1 8 ? 27.717 8.019 8.435 1.00 10.00 ? 8 DC A O2 1
ATOM 157 N N3 . DC A 1 8 ? 29.631 7.805 7.224 1.00 10.00 ? 8 DC A N3 1
ATOM 158 C C4 . DC A 1 8 ? 30.966 7.742 7.215 1.00 10.00 ? 8 DC A C4 1
ATOM 159 N N4 . DC A 1 8 ? 31.578 7.602 6.046 1.00 10.00 ? 8 DC A N4 1
ATOM 160 C C5 . DC A 1 8 ? 31.722 7.820 8.431 1.00 10.00 ? 8 DC A C5 1
ATOM 161 C C6 . DC A 1 8 ? 31.018 7.972 9.591 1.00 10.00 ? 8 DC A C6 1
ATOM 162 O "O5'" . DG B 1 1 ? 24.477 8.225 -2.434 1.00 10.00 ? 9 DG B "O5'" 1
ATOM 163 C "C5'" . DG B 1 1 ? 23.861 6.987 -2.034 1.00 10.00 ? 9 DG B "C5'" 1
ATOM 164 C "C4'" . DG B 1 1 ? 23.306 7.123 -0.626 1.00 10.00 ? 9 DG B "C4'" 1
ATOM 165 O "O4'" . DG B 1 1 ? 23.924 6.037 0.230 1.00 10.00 ? 9 DG B "O4'" 1
ATOM 166 C "C3'" . DG B 1 1 ? 23.708 8.373 0.150 1.00 10.00 ? 9 DG B "C3'" 1
ATOM 167 O "O3'" . DG B 1 1 ? 22.834 9.468 -0.109 1.00 10.00 ? 9 DG B "O3'" 1
ATOM 168 C "C2'" . DG B 1 1 ? 23.558 7.941 1.603 1.00 10.00 ? 9 DG B "C2'" 1
ATOM 169 C "C1'" . DG B 1 1 ? 24.066 6.508 1.562 1.00 10.00 ? 9 DG B "C1'" 1
ATOM 170 N N9 . DG B 1 1 ? 25.509 6.477 1.896 1.00 10.00 ? 9 DG B N9 1
ATOM 171 C C8 . DG B 1 1 ? 26.571 6.274 1.031 1.00 10.00 ? 9 DG B C8 1
ATOM 172 N N7 . DG B 1 1 ? 27.738 6.465 1.583 1.00 10.00 ? 9 DG B N7 1
ATOM 173 C C5 . DG B 1 1 ? 27.441 6.815 2.910 1.00 10.00 ? 9 DG B C5 1
ATOM 174 C C6 . DG B 1 1 ? 28.300 7.135 3.988 1.00 10.00 ? 9 DG B C6 1
ATOM 175 O O6 . DG B 1 1 ? 29.527 7.181 4.013 1.00 10.00 ? 9 DG B O6 1
ATOM 176 N N1 . DG B 1 1 ? 27.573 7.435 5.161 1.00 10.00 ? 9 DG B N1 1
ATOM 177 C C2 . DG B 1 1 ? 26.202 7.427 5.261 1.00 10.00 ? 9 DG B C2 1
ATOM 178 N N2 . DG B 1 1 ? 25.696 7.742 6.464 1.00 10.00 ? 9 DG B N2 1
ATOM 179 N N3 . DG B 1 1 ? 25.392 7.115 4.251 1.00 10.00 ? 9 DG B N3 1
ATOM 180 C C4 . DG B 1 1 ? 26.074 6.823 3.107 1.00 10.00 ? 9 DG B C4 1
ATOM 181 P P . DG B 1 2 ? 23.438 10.951 -0.205 1.00 10.00 ? 10 DG B P 1
ATOM 182 O OP1 . DG B 1 2 ? 22.377 11.808 -0.777 1.00 10.00 ? 10 DG B OP1 1
ATOM 183 O OP2 . DG B 1 2 ? 24.727 10.963 -0.940 1.00 10.00 ? 10 DG B OP2 1
ATOM 184 O "O5'" . DG B 1 2 ? 23.699 11.333 1.332 1.00 10.00 ? 10 DG B "O5'" 1
ATOM 185 C "C5'" . DG B 1 2 ? 22.557 11.590 2.104 1.00 10.00 ? 10 DG B "C5'" 1
ATOM 186 C "C4'" . DG B 1 2 ? 22.914 11.641 3.578 1.00 10.00 ? 10 DG B "C4'" 1
ATOM 187 O "O4'" . DG B 1 2 ? 23.789 10.523 3.879 1.00 10.00 ? 10 DG B "O4'" 1
ATOM 188 C "C3'" . DG B 1 2 ? 23.737 12.840 4.038 1.00 10.00 ? 10 DG B "C3'" 1
ATOM 189 O "O3'" . DG B 1 2 ? 22.921 13.958 4.380 1.00 10.00 ? 10 DG B "O3'" 1
ATOM 190 C "C2'" . DG B 1 2 ? 24.421 12.326 5.295 1.00 10.00 ? 10 DG B "C2'" 1
ATOM 191 C "C1'" . DG B 1 2 ? 24.655 10.862 4.952 1.00 10.00 ? 10 DG B "C1'" 1
ATOM 192 N N9 . DG B 1 2 ? 26.020 10.702 4.368 1.00 10.00 ? 10 DG B N9 1
ATOM 193 C C8 . DG B 1 2 ? 26.436 10.402 3.082 1.00 10.00 ? 10 DG B C8 1
ATOM 194 N N7 . DG B 1 2 ? 27.731 10.371 2.931 1.00 10.00 ? 10 DG B N7 1
ATOM 195 C C5 . DG B 1 2 ? 28.223 10.663 4.209 1.00 10.00 ? 10 DG B C5 1
ATOM 196 C C6 . DG B 1 2 ? 29.552 10.768 4.677 1.00 10.00 ? 10 DG B C6 1
ATOM 197 O O6 . DG B 1 2 ? 30.600 10.620 4.050 1.00 10.00 ? 10 DG B O6 1
ATOM 198 N N1 . DG B 1 2 ? 29.599 11.084 6.050 1.00 10.00 ? 10 DG B N1 1
ATOM 199 C C2 . DG B 1 2 ? 28.495 11.282 6.861 1.00 10.00 ? 10 DG B C2 1
ATOM 200 N N2 . DG B 1 2 ? 28.745 11.582 8.142 1.00 10.00 ? 10 DG B N2 1
ATOM 201 N N3 . DG B 1 2 ? 27.243 11.177 6.426 1.00 10.00 ? 10 DG B N3 1
ATOM 202 C C4 . DG B 1 2 ? 27.178 10.870 5.098 1.00 10.00 ? 10 DG B C4 1
ATOM 203 P P . DT B 1 3 ? 23.380 15.415 3.950 1.00 10.00 ? 11 DT B P 1
ATOM 204 O OP1 . DT B 1 3 ? 22.199 16.306 3.996 1.00 10.00 ? 11 DT B OP1 1
ATOM 205 O OP2 . DT B 1 3 ? 24.131 15.415 2.664 1.00 10.00 ? 11 DT B OP2 1
ATOM 206 O "O5'" . DT B 1 3 ? 24.371 15.753 5.157 1.00 10.00 ? 11 DT B "O5'" 1
ATOM 207 C "C5'" . DT B 1 3 ? 23.728 15.566 6.493 1.00 10.00 ? 11 DT B "C5'" 1
ATOM 208 C "C4'" . DT B 1 3 ? 24.749 16.018 7.512 1.00 10.00 ? 11 DT B "C4'" 1
ATOM 209 O "O4'" . DT B 1 3 ? 25.660 14.854 7.641 1.00 10.00 ? 11 DT B "O4'" 1
ATOM 210 C "C3'" . DT B 1 3 ? 25.682 17.144 7.073 1.00 10.00 ? 11 DT B "C3'" 1
ATOM 211 O "O3'" . DT B 1 3 ? 25.206 18.421 7.491 1.00 10.00 ? 11 DT B "O3'" 1
ATOM 212 C "C2'" . DT B 1 3 ? 26.964 16.824 7.817 1.00 10.00 ? 11 DT B "C2'" 1
ATOM 213 C "C1'" . DT B 1 3 ? 26.991 15.305 7.767 1.00 10.00 ? 11 DT B "C1'" 1
ATOM 214 N N1 . DT B 1 3 ? 27.760 14.752 6.631 1.00 10.00 ? 11 DT B N1 1
ATOM 215 C C2 . DT B 1 3 ? 29.118 14.643 6.852 1.00 10.00 ? 11 DT B C2 1
ATOM 216 O O2 . DT B 1 3 ? 29.624 14.795 7.955 1.00 10.00 ? 11 DT B O2 1
ATOM 217 N N3 . DT B 1 3 ? 29.869 14.347 5.729 1.00 10.00 ? 11 DT B N3 1
ATOM 218 C C4 . DT B 1 3 ? 29.404 14.157 4.443 1.00 10.00 ? 11 DT B C4 1
ATOM 219 O O4 . DT B 1 3 ? 30.179 13.896 3.512 1.00 10.00 ? 11 DT B O4 1
ATOM 220 C C5 . DT B 1 3 ? 27.974 14.297 4.309 1.00 10.00 ? 11 DT B C5 1
ATOM 221 C C7 . DT B 1 3 ? 27.418 14.090 2.923 1.00 10.00 ? 11 DT B C7 1
ATOM 222 C C6 . DT B 1 3 ? 27.209 14.577 5.382 1.00 10.00 ? 11 DT B C6 1
ATOM 223 P P . DA B 1 4 ? 25.631 19.648 6.572 1.00 10.00 ? 12 DA B P 1
ATOM 224 O OP1 . DA B 1 4 ? 24.749 20.754 7.019 1.00 10.00 ? 12 DA B OP1 1
ATOM 225 O OP2 . DA B 1 4 ? 25.545 19.297 5.123 1.00 10.00 ? 12 DA B OP2 1
ATOM 226 O "O5'" . DA B 1 4 ? 27.148 19.971 6.948 1.00 10.00 ? 12 DA B "O5'" 1
ATOM 227 C "C5'" . DA B 1 4 ? 27.569 20.240 8.297 1.00 10.00 ? 12 DA B "C5'" 1
ATOM 228 C "C4'" . DA B 1 4 ? 29.069 20.205 8.439 1.00 10.00 ? 12 DA B "C4'" 1
ATOM 229 O "O4'" . DA B 1 4 ? 29.563 18.912 8.017 1.00 10.00 ? 12 DA B "O4'" 1
ATOM 230 C "C3'" . DA B 1 4 ? 29.856 21.163 7.545 1.00 10.00 ? 12 DA B "C3'" 1
ATOM 231 O "O3'" . DA B 1 4 ? 29.977 22.456 8.130 1.00 10.00 ? 12 DA B "O3'" 1
ATOM 232 C "C2'" . DA B 1 4 ? 31.227 20.516 7.479 1.00 10.00 ? 12 DA B "C2'" 1
ATOM 233 C "C1'" . DA B 1 4 ? 30.881 19.036 7.529 1.00 10.00 ? 12 DA B "C1'" 1
ATOM 234 N N9 . DA B 1 4 ? 30.863 18.374 6.192 1.00 10.00 ? 12 DA B N9 1
ATOM 235 C C8 . DA B 1 4 ? 29.833 18.055 5.345 1.00 10.00 ? 12 DA B C8 1
ATOM 236 N N7 . DA B 1 4 ? 30.218 17.436 4.263 1.00 10.00 ? 12 DA B N7 1
ATOM 237 C C5 . DA B 1 4 ? 31.589 17.350 4.401 1.00 10.00 ? 12 DA B C5 1
ATOM 238 C C6 . DA B 1 4 ? 32.592 16.797 3.578 1.00 10.00 ? 12 DA B C6 1
ATOM 239 N N6 . DA B 1 4 ? 32.336 16.205 2.393 1.00 10.00 ? 12 DA B N6 1
ATOM 240 N N1 . DA B 1 4 ? 33.856 16.875 4.017 1.00 10.00 ? 12 DA B N1 1
ATOM 241 C C2 . DA B 1 4 ? 34.099 17.459 5.186 1.00 10.00 ? 12 DA B C2 1
ATOM 242 N N3 . DA B 1 4 ? 33.260 18.008 6.042 1.00 10.00 ? 12 DA B N3 1
ATOM 243 C C4 . DA B 1 4 ? 32.001 17.915 5.579 1.00 10.00 ? 12 DA B C4 1
ATOM 244 P P . DT B 1 5 ? 30.242 23.694 7.190 1.00 10.00 ? 13 DT B P 1
ATOM 245 O OP1 . DT B 1 5 ? 29.835 24.898 7.959 1.00 10.00 ? 13 DT B OP1 1
ATOM 246 O OP2 . DT B 1 5 ? 29.593 23.527 5.858 1.00 10.00 ? 13 DT B OP2 1
ATOM 247 O "O5'" . DT B 1 5 ? 31.828 23.675 7.002 1.00 10.00 ? 13 DT B "O5'" 1
ATOM 248 C "C5'" . DT B 1 5 ? 32.819 24.014 7.984 1.00 10.00 ? 13 DT B "C5'" 1
ATOM 249 C "C4'" . DT B 1 5 ? 34.146 23.632 7.370 1.00 10.00 ? 13 DT B "C4'" 1
ATOM 250 O "O4'" . DT B 1 5 ? 34.152 22.226 6.944 1.00 10.00 ? 13 DT B "O4'" 1
ATOM 251 C "C3'" . DT B 1 5 ? 34.526 24.345 6.067 1.00 10.00 ? 13 DT B "C3'" 1
ATOM 252 O "O3'" . DT B 1 5 ? 35.106 25.622 6.314 1.00 10.00 ? 13 DT B "O3'" 1
ATOM 253 C "C2'" . DT B 1 5 ? 35.578 23.426 5.466 1.00 10.00 ? 13 DT B "C2'" 1
ATOM 254 C "C1'" . DT B 1 5 ? 35.061 22.055 5.871 1.00 10.00 ? 13 DT B "C1'" 1
ATOM 255 N N1 . DT B 1 5 ? 34.339 21.365 4.748 1.00 10.00 ? 13 DT B N1 1
ATOM 256 C C2 . DT B 1 5 ? 35.070 20.629 3.837 1.00 10.00 ? 13 DT B C2 1
ATOM 257 O O2 . DT B 1 5 ? 36.271 20.481 3.929 1.00 10.00 ? 13 DT B O2 1
ATOM 258 N N3 . DT B 1 5 ? 34.339 20.065 2.806 1.00 10.00 ? 13 DT B N3 1
ATOM 259 C C4 . DT B 1 5 ? 32.986 20.174 2.606 1.00 10.00 ? 13 DT B C4 1
ATOM 260 O O4 . DT B 1 5 ? 32.441 19.621 1.641 1.00 10.00 ? 13 DT B O4 1
ATOM 261 C C5 . DT B 1 5 ? 32.304 20.964 3.608 1.00 10.00 ? 13 DT B C5 1
ATOM 262 C C7 . DT B 1 5 ? 30.827 21.100 3.437 1.00 10.00 ? 13 DT B C7 1
ATOM 263 C C6 . DT B 1 5 ? 32.979 21.525 4.631 1.00 10.00 ? 13 DT B C6 1
ATOM 264 P P . DA B 1 6 ? 34.953 26.775 5.270 1.00 10.00 ? 14 DA B P 1
ATOM 265 O OP1 . DA B 1 6 ? 35.128 28.037 6.030 1.00 10.00 ? 14 DA B OP1 1
ATOM 266 O OP2 . DA B 1 6 ? 33.685 26.658 4.505 1.00 10.00 ? 14 DA B OP2 1
ATOM 267 O "O5'" . DA B 1 6 ? 36.181 26.549 4.276 1.00 10.00 ? 14 DA B "O5'" 1
ATOM 268 C "C5'" . DA B 1 6 ? 37.595 26.545 4.752 1.00 10.00 ? 14 DA B "C5'" 1
ATOM 269 C "C4'" . DA B 1 6 ? 38.436 25.852 3.700 1.00 10.00 ? 14 DA B "C4'" 1
ATOM 270 O "O4'" . DA B 1 6 ? 37.759 24.508 3.516 1.00 10.00 ? 14 DA B "O4'" 1
ATOM 271 C "C3'" . DA B 1 6 ? 38.303 26.370 2.263 1.00 10.00 ? 14 DA B "C3'" 1
ATOM 272 O "O3'" . DA B 1 6 ? 39.200 27.441 1.992 1.00 10.00 ? 14 DA B "O3'" 1
ATOM 273 C "C2'" . DA B 1 6 ? 38.703 25.162 1.424 1.00 10.00 ? 14 DA B "C2'" 1
ATOM 274 C "C1'" . DA B 1 6 ? 38.105 24.017 2.226 1.00 10.00 ? 14 DA B "C1'" 1
ATOM 275 N N9 . DA B 1 6 ? 36.866 23.515 1.562 1.00 10.00 ? 14 DA B N9 1
ATOM 276 C C8 . DA B 1 6 ? 35.560 23.737 1.908 1.00 10.00 ? 14 DA B C8 1
ATOM 277 N N7 . DA B 1 6 ? 34.712 23.071 1.186 1.00 10.00 ? 14 DA B N7 1
ATOM 278 C C5 . DA B 1 6 ? 35.508 22.370 0.296 1.00 10.00 ? 14 DA B C5 1
ATOM 279 C C6 . DA B 1 6 ? 35.207 21.467 -0.747 1.00 10.00 ? 14 DA B C6 1
ATOM 280 N N6 . DA B 1 6 ? 33.955 21.112 -1.073 1.00 10.00 ? 14 DA B N6 1
ATOM 281 N N1 . DA B 1 6 ? 36.235 20.941 -1.432 1.00 10.00 ? 14 DA B N1 1
ATOM 282 C C2 . DA B 1 6 ? 37.471 21.299 -1.102 1.00 10.00 ? 14 DA B C2 1
ATOM 283 N N3 . DA B 1 6 ? 37.878 22.121 -0.159 1.00 10.00 ? 14 DA B N3 1
ATOM 284 C C4 . DA B 1 6 ? 36.828 22.623 0.514 1.00 10.00 ? 14 DA B C4 1
ATOM 285 P P . DC B 1 7 ? 38.861 28.629 0.960 1.00 10.00 ? 15 DC B P 1
ATOM 286 O OP1 . DC B 1 7 ? 39.657 29.789 1.432 1.00 10.00 ? 15 DC B OP1 1
ATOM 287 O OP2 . DC B 1 7 ? 37.395 28.847 0.889 1.00 10.00 ? 15 DC B OP2 1
ATOM 288 O "O5'" . DC B 1 7 ? 39.389 28.142 -0.472 1.00 10.00 ? 15 DC B "O5'" 1
ATOM 289 C "C5'" . DC B 1 7 ? 40.415 27.285 -0.601 1.00 10.00 ? 15 DC B "C5'" 1
ATOM 290 C "C4'" . DC B 1 7 ? 40.486 26.467 -1.875 1.00 10.00 ? 15 DC B "C4'" 1
ATOM 291 O "O4'" . DC B 1 7 ? 39.749 25.260 -1.637 1.00 10.00 ? 15 DC B "O4'" 1
ATOM 292 C "C3'" . DC B 1 7 ? 39.803 27.059 -3.111 1.00 10.00 ? 15 DC B "C3'" 1
ATOM 293 O "O3'" . DC B 1 7 ? 40.680 27.893 -3.871 1.00 10.00 ? 15 DC B "O3'" 1
ATOM 294 C "C2'" . DC B 1 7 ? 39.461 25.828 -3.938 1.00 10.00 ? 15 DC B "C2'" 1
ATOM 295 C "C1'" . DC B 1 7 ? 39.169 24.800 -2.852 1.00 10.00 ? 15 DC B "C1'" 1
ATOM 296 N N1 . DC B 1 7 ? 37.694 24.660 -2.677 1.00 10.00 ? 15 DC B N1 1
ATOM 297 C C2 . DC B 1 7 ? 37.026 23.737 -3.482 1.00 10.00 ? 15 DC B C2 1
ATOM 298 O O2 . DC B 1 7 ? 37.678 23.044 -4.267 1.00 10.00 ? 15 DC B O2 1
ATOM 299 N N3 . DC B 1 7 ? 35.681 23.644 -3.378 1.00 10.00 ? 15 DC B N3 1
ATOM 300 C C4 . DC B 1 7 ? 35.000 24.411 -2.518 1.00 10.00 ? 15 DC B C4 1
ATOM 301 N N4 . DC B 1 7 ? 33.689 24.275 -2.455 1.00 10.00 ? 15 DC B N4 1
ATOM 302 C C5 . DC B 1 7 ? 35.663 25.365 -1.683 1.00 10.00 ? 15 DC B C5 1
ATOM 303 C C6 . DC B 1 7 ? 37.017 25.443 -1.800 1.00 10.00 ? 15 DC B C6 1
ATOM 304 P P . DC B 1 8 ? 40.498 28.644 -5.203 1.00 10.00 ? 16 DC B P 1
ATOM 305 O OP1 . DC B 1 8 ? 41.815 29.275 -5.458 1.00 10.00 ? 16 DC B OP1 1
ATOM 306 O OP2 . DC B 1 8 ? 39.364 29.587 -5.019 1.00 10.00 ? 16 DC B OP2 1
ATOM 307 O "O5'" . DC B 1 8 ? 40.142 27.624 -6.380 1.00 10.00 ? 16 DC B "O5'" 1
ATOM 308 C "C5'" . DC B 1 8 ? 41.004 26.654 -7.090 1.00 10.00 ? 16 DC B "C5'" 1
ATOM 309 C "C4'" . DC B 1 8 ? 40.068 25.961 -8.059 1.00 10.00 ? 16 DC B "C4'" 1
ATOM 310 O "O4'" . DC B 1 8 ? 38.958 25.587 -7.257 1.00 10.00 ? 16 DC B "O4'" 1
ATOM 311 C "C3'" . DC B 1 8 ? 39.515 26.810 -9.207 1.00 10.00 ? 16 DC B "C3'" 1
ATOM 312 O "O3'" . DC B 1 8 ? 40.241 26.619 -10.422 1.00 10.00 ? 16 DC B "O3'" 1
ATOM 313 C "C2'" . DC B 1 8 ? 38.108 26.272 -9.378 1.00 10.00 ? 16 DC B "C2'" 1
ATOM 314 C "C1'" . DC B 1 8 ? 38.031 25.229 -8.268 1.00 10.00 ? 16 DC B "C1'" 1
ATOM 315 N N1 . DC B 1 8 ? 36.705 25.455 -7.508 1.00 10.00 ? 16 DC B N1 1
ATOM 316 C C2 . DC B 1 8 ? 35.560 24.781 -7.913 1.00 10.00 ? 16 DC B C2 1
ATOM 317 O O2 . DC B 1 8 ? 35.612 24.053 -8.915 1.00 10.00 ? 16 DC B O2 1
ATOM 318 N N3 . DC B 1 8 ? 34.418 24.952 -7.199 1.00 10.00 ? 16 DC B N3 1
ATOM 319 C C4 . DC B 1 8 ? 34.395 25.747 -6.117 1.00 10.00 ? 16 DC B C4 1
ATOM 320 N N4 . DC B 1 8 ? 33.260 25.875 -5.453 1.00 10.00 ? 16 DC B N4 1
ATOM 321 C C5 . DC B 1 8 ? 35.556 26.455 -5.683 1.00 10.00 ? 16 DC B C5 1
ATOM 322 C C6 . DC B 1 8 ? 36.691 26.265 -6.414 1.00 10.00 ? 16 DC B C6 1
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