data_1R41
#
_entry.id 1R41
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.386
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1R41 pdb_00001r41 10.2210/pdb1r41/pdb
NDB UD0045 ? ?
RCSB RCSB020409 ? ?
WWPDB D_1000020409 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2003-12-23
2 'Structure model' 1 1 2008-04-29
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1R41
_pdbx_database_status.recvd_initial_deposition_date 2003-10-03
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 1R3Z
_pdbx_database_related.details
'Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers'
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Shi, K.' 1
'Pan, B.' 2
'Tippin, D.' 3
'Sundaralingam, M.' 4
#
_citation.id primary
_citation.title
'Structures of d(Gm5)CGm5CGCGC) and d(GCGCGm5CGm5C): effects of methylation on alternating DNA octamers.'
_citation.journal_abbrev 'Acta Crystallogr.,Sect.D'
_citation.journal_volume 60
_citation.page_first 61
_citation.page_last 65
_citation.year 2004
_citation.journal_id_ASTM ABCRE6
_citation.country DK
_citation.journal_id_ISSN 0907-4449
_citation.journal_id_CSD 0766
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 14684893
_citation.pdbx_database_id_DOI 10.1107/S0907444903021899
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Shi, K.' 1 ?
primary 'Pan, B.' 2 ?
primary 'Tippin, D.' 3 ?
primary 'Sundaralingam, M.' 4 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*GP*CP*GP*CP*GP*(5CM)P*GP*(5CM))-3'" 2456.647 1 ? ? ? ?
2 water nat water 18.015 19 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DC)(DG)(5CM)(DG)(5CM)'
_entity_poly.pdbx_seq_one_letter_code_can GCGCGCGC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DC n
1 3 DG n
1 4 DC n
1 5 DG n
1 6 5CM n
1 7 DG n
1 8 5CM n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'DNA Synthesizer'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG GUA A . n
A 1 2 DC 2 2 2 DC CYT A . n
A 1 3 DG 3 3 3 DG GUA A . n
A 1 4 DC 4 4 4 DC CYT A . n
A 1 5 DG 5 5 5 DG GUA A . n
A 1 6 5CM 6 6 6 5CM CYM A . n
A 1 7 DG 7 7 7 DG GUA A . n
A 1 8 5CM 8 8 8 5CM CYM A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 101 HOH WAT A .
B 2 HOH 2 102 102 HOH WAT A .
B 2 HOH 3 103 103 HOH WAT A .
B 2 HOH 4 104 104 HOH WAT A .
B 2 HOH 5 105 105 HOH WAT A .
B 2 HOH 6 106 106 HOH WAT A .
B 2 HOH 7 107 107 HOH WAT A .
B 2 HOH 8 108 108 HOH WAT A .
B 2 HOH 9 109 109 HOH WAT A .
B 2 HOH 10 110 110 HOH WAT A .
B 2 HOH 11 111 111 HOH WAT A .
B 2 HOH 12 112 112 HOH WAT A .
B 2 HOH 13 113 113 HOH WAT A .
B 2 HOH 14 114 114 HOH WAT A .
B 2 HOH 15 115 115 HOH WAT A .
B 2 HOH 16 116 116 HOH WAT A .
B 2 HOH 17 117 117 HOH WAT A .
B 2 HOH 18 118 118 HOH WAT A .
B 2 HOH 19 119 119 HOH WAT A .
#
_cell.entry_id 1R41
_cell.length_a 43.12
_cell.length_b 43.12
_cell.length_c 24.77
_cell.angle_alpha 90
_cell.angle_beta 90
_cell.angle_gamma 90
_cell.pdbx_unique_axis ?
_cell.Z_PDB 8
#
_symmetry.entry_id 1R41
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.Int_Tables_number 96
_symmetry.cell_setting ?
#
_exptl.entry_id 1R41
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.26
_exptl_crystal.density_percent_sol 45.46
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.0
_exptl_crystal_grow.pdbx_details
'cacodylate, magnesium chloride, spermine tetrachloride, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K'
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 cacodylate ? ? ?
1 2 1 'magnesium chloride' ? ? ?
1 3 1 'spermine tetrachloride' ? ? ?
1 4 1 H2O ? ? ?
1 5 2 cacodylate ? ? ?
1 6 2 'magnesium chloride' ? ? ?
1 7 2 'spermine tetrachloride' ? ? ?
1 8 2 H2O ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 298
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'RIGAKU RAXIS IIC'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator GRAPHITE
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.54
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU RU200'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.54
#
_reflns.entry_id 1R41
_reflns.number_all ?
_reflns.number_obs 2192
_reflns.percent_possible_obs ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.d_resolution_high 1.80
_reflns.d_resolution_low 19.23
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 1R41
_refine.ls_d_res_high 1.9
_refine.ls_d_res_low 10
_refine.pdbx_ls_sigma_F 0
_refine.pdbx_ls_sigma_I ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs ?
_refine.ls_number_reflns_R_free ?
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_all 0.204
_refine.ls_R_factor_obs 0.183
_refine.ls_R_factor_R_work 0.183
_refine.ls_R_factor_R_free 0.198
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_method_to_determine_struct 'Molecular Placement'
_refine.pdbx_starting_model ?
_refine.pdbx_ls_cross_valid_method ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_stereochemistry_target_values 'Engh & Huber'
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.pdbx_isotropic_thermal_model ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.details ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_SU_B ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 163
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 19
_refine_hist.number_atoms_total 182
_refine_hist.d_res_high 1.9
_refine_hist.d_res_low 10
#
_database_PDB_matrix.entry_id 1R41
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1R41
_struct.title
'Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1R41
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1R41
_struct_ref.pdbx_db_accession 1R41
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1R41
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1R41
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 5 "O3'" ? ? ? 1_555 A 5CM 6 P ? ? A DG 5 A 5CM 6 1_555 ? ? ? ? ? ? ? 1.583 ? ?
covale2 covale both ? A 5CM 6 "O3'" ? ? ? 1_555 A DG 7 P ? ? A 5CM 6 A DG 7 1_555 ? ? ? ? ? ? ? 1.680 ? ?
covale3 covale both ? A DG 7 "O3'" ? ? ? 1_555 A 5CM 8 P ? ? A DG 7 A 5CM 8 1_555 ? ? ? ? ? ? ? 1.573 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A 5CM 8 N3 ? ? A DG 1 A 5CM 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A 5CM 8 O2 ? ? A DG 1 A 5CM 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A 5CM 8 N4 ? ? A DG 1 A 5CM 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A 5CM 6 N3 ? ? A DG 3 A 5CM 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A 5CM 6 O2 ? ? A DG 3 A 5CM 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A 5CM 6 N4 ? ? A DG 3 A 5CM 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A 5CM 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A 5CM 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A 5CM 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A 5CM 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A 5CM 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A 5CM 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A 5CM 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A 5CM 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A 5CM 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A 5CM 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A 5CM 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A 5CM 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C5'" A DG 1 ? ? "C4'" A DG 1 ? ? 1.555 1.512 0.043 0.007 N
2 1 N9 A DG 1 ? ? C4 A DG 1 ? ? 1.319 1.375 -0.056 0.008 N
3 1 "O3'" A DG 1 ? ? P A DC 2 ? ? 1.683 1.607 0.076 0.012 Y
4 1 P A DC 2 ? ? "O5'" A DC 2 ? ? 1.512 1.593 -0.081 0.010 N
5 1 N1 A DC 2 ? ? C2 A DC 2 ? ? 1.309 1.397 -0.088 0.010 N
6 1 C5 A DC 2 ? ? C6 A DC 2 ? ? 1.411 1.339 0.072 0.008 N
7 1 "O3'" A DC 2 ? ? P A DG 3 ? ? 1.693 1.607 0.086 0.012 Y
8 1 C6 A DG 3 ? ? N1 A DG 3 ? ? 1.310 1.391 -0.081 0.007 N
9 1 N7 A DG 3 ? ? C8 A DG 3 ? ? 1.243 1.305 -0.062 0.006 N
10 1 N9 A DG 3 ? ? C4 A DG 3 ? ? 1.297 1.375 -0.078 0.008 N
11 1 C2 A DG 3 ? ? N2 A DG 3 ? ? 1.220 1.341 -0.121 0.010 N
12 1 P A DG 5 ? ? "O5'" A DG 5 ? ? 1.514 1.593 -0.079 0.010 N
13 1 C6 A DG 5 ? ? N1 A DG 5 ? ? 1.447 1.391 0.056 0.007 N
14 1 C2 A DG 5 ? ? N2 A DG 5 ? ? 1.407 1.341 0.066 0.010 N
15 1 "O3'" A 5CM 6 ? ? P A DG 7 ? ? 1.680 1.607 0.073 0.012 Y
16 1 P A DG 7 ? ? OP1 A DG 7 ? ? 1.638 1.485 0.153 0.017 N
17 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? 1.336 1.418 -0.082 0.012 N
18 1 "O3'" A DG 7 ? ? "C3'" A DG 7 ? ? 1.342 1.419 -0.077 0.006 N
19 1 N3 A DG 7 ? ? C4 A DG 7 ? ? 1.218 1.350 -0.132 0.007 N
20 1 C5 A DG 7 ? ? C6 A DG 7 ? ? 1.480 1.419 0.061 0.010 N
21 1 N9 A DG 7 ? ? C4 A DG 7 ? ? 1.430 1.375 0.055 0.008 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DG 1 ? ? "C4'" A DG 1 ? ? "C3'" A DG 1 ? ? 101.05 104.50 -3.45 0.40 N
2 1 C5 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 133.82 128.60 5.22 0.60 N
3 1 "O3'" A DC 2 ? ? P A DG 3 ? ? OP1 A DG 3 ? ? 91.52 105.20 -13.68 2.20 Y
4 1 "O5'" A DG 3 ? ? P A DG 3 ? ? OP1 A DG 3 ? ? 123.35 110.70 12.65 1.20 N
5 1 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 101.76 104.50 -2.74 0.40 N
6 1 "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 124.23 115.70 8.53 1.20 N
7 1 "O5'" A DC 4 ? ? P A DC 4 ? ? OP2 A DC 4 ? ? 120.89 110.70 10.19 1.20 N
8 1 "O3'" A DC 4 ? ? P A DG 5 ? ? OP2 A DG 5 ? ? 119.37 110.50 8.87 1.10 Y
9 1 "O5'" A DG 5 ? ? "C5'" A DG 5 ? ? "C4'" A DG 5 ? ? 104.36 109.40 -5.04 0.80 N
10 1 "O3'" A DG 5 ? ? P A 5CM 6 ? ? OP2 A 5CM 6 ? ? 120.61 110.50 10.11 1.10 Y
11 1 "O3'" A 5CM 6 ? ? P A DG 7 ? ? OP2 A DG 7 ? ? 118.13 110.50 7.63 1.10 Y
12 1 "O5'" A DG 7 ? ? P A DG 7 ? ? OP2 A DG 7 ? ? 97.63 105.70 -8.07 0.90 N
13 1 "O4'" A DG 7 ? ? "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? 101.68 104.50 -2.82 0.40 N
14 1 "O3'" A DG 7 ? ? P A 5CM 8 ? ? OP2 A 5CM 8 ? ? 130.78 110.50 20.28 1.10 Y
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DG A 1 ? ? 0.055 'SIDE CHAIN'
2 1 DC A 2 ? ? 0.071 'SIDE CHAIN'
3 1 DG A 3 ? ? 0.099 'SIDE CHAIN'
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A 5CM 6 A 5CM 6 ? DC ?
2 A 5CM 8 A 5CM 8 ? DC ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
5CM N1 N N N 1
5CM C2 C N N 2
5CM N3 N N N 3
5CM C4 C N N 4
5CM C5 C N N 5
5CM C5A C N N 6
5CM C6 C N N 7
5CM O2 O N N 8
5CM N4 N N N 9
5CM "C1'" C N R 10
5CM "C2'" C N N 11
5CM "C3'" C N S 12
5CM "C4'" C N R 13
5CM "O4'" O N N 14
5CM "O3'" O N N 15
5CM "C5'" C N N 16
5CM "O5'" O N N 17
5CM P P N N 18
5CM OP1 O N N 19
5CM OP2 O N N 20
5CM OP3 O N N 21
5CM H5A1 H N N 22
5CM H5A2 H N N 23
5CM H5A3 H N N 24
5CM H6 H N N 25
5CM HN41 H N N 26
5CM HN42 H N N 27
5CM "H1'" H N N 28
5CM "H2'" H N N 29
5CM "H2''" H N N 30
5CM "H3'" H N N 31
5CM "H4'" H N N 32
5CM "HO3'" H N N 33
5CM "H5'" H N N 34
5CM "H5''" H N N 35
5CM HOP2 H N N 36
5CM HOP3 H N N 37
DC OP3 O N N 38
DC P P N N 39
DC OP1 O N N 40
DC OP2 O N N 41
DC "O5'" O N N 42
DC "C5'" C N N 43
DC "C4'" C N R 44
DC "O4'" O N N 45
DC "C3'" C N S 46
DC "O3'" O N N 47
DC "C2'" C N N 48
DC "C1'" C N R 49
DC N1 N N N 50
DC C2 C N N 51
DC O2 O N N 52
DC N3 N N N 53
DC C4 C N N 54
DC N4 N N N 55
DC C5 C N N 56
DC C6 C N N 57
DC HOP3 H N N 58
DC HOP2 H N N 59
DC "H5'" H N N 60
DC "H5''" H N N 61
DC "H4'" H N N 62
DC "H3'" H N N 63
DC "HO3'" H N N 64
DC "H2'" H N N 65
DC "H2''" H N N 66
DC "H1'" H N N 67
DC H41 H N N 68
DC H42 H N N 69
DC H5 H N N 70
DC H6 H N N 71
DG OP3 O N N 72
DG P P N N 73
DG OP1 O N N 74
DG OP2 O N N 75
DG "O5'" O N N 76
DG "C5'" C N N 77
DG "C4'" C N R 78
DG "O4'" O N N 79
DG "C3'" C N S 80
DG "O3'" O N N 81
DG "C2'" C N N 82
DG "C1'" C N R 83
DG N9 N Y N 84
DG C8 C Y N 85
DG N7 N Y N 86
DG C5 C Y N 87
DG C6 C N N 88
DG O6 O N N 89
DG N1 N N N 90
DG C2 C N N 91
DG N2 N N N 92
DG N3 N N N 93
DG C4 C Y N 94
DG HOP3 H N N 95
DG HOP2 H N N 96
DG "H5'" H N N 97
DG "H5''" H N N 98
DG "H4'" H N N 99
DG "H3'" H N N 100
DG "HO3'" H N N 101
DG "H2'" H N N 102
DG "H2''" H N N 103
DG "H1'" H N N 104
DG H8 H N N 105
DG H1 H N N 106
DG H21 H N N 107
DG H22 H N N 108
HOH O O N N 109
HOH H1 H N N 110
HOH H2 H N N 111
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5CM N1 C2 sing N N 1
5CM N1 C6 sing N N 2
5CM N1 "C1'" sing N N 3
5CM C2 N3 sing N N 4
5CM C2 O2 doub N N 5
5CM N3 C4 doub N N 6
5CM C4 C5 sing N N 7
5CM C4 N4 sing N N 8
5CM C5 C5A sing N N 9
5CM C5 C6 doub N N 10
5CM C5A H5A1 sing N N 11
5CM C5A H5A2 sing N N 12
5CM C5A H5A3 sing N N 13
5CM C6 H6 sing N N 14
5CM N4 HN41 sing N N 15
5CM N4 HN42 sing N N 16
5CM "C1'" "C2'" sing N N 17
5CM "C1'" "O4'" sing N N 18
5CM "C1'" "H1'" sing N N 19
5CM "C2'" "C3'" sing N N 20
5CM "C2'" "H2'" sing N N 21
5CM "C2'" "H2''" sing N N 22
5CM "C3'" "C4'" sing N N 23
5CM "C3'" "O3'" sing N N 24
5CM "C3'" "H3'" sing N N 25
5CM "C4'" "O4'" sing N N 26
5CM "C4'" "C5'" sing N N 27
5CM "C4'" "H4'" sing N N 28
5CM "O3'" "HO3'" sing N N 29
5CM "C5'" "O5'" sing N N 30
5CM "C5'" "H5'" sing N N 31
5CM "C5'" "H5''" sing N N 32
5CM "O5'" P sing N N 33
5CM P OP1 doub N N 34
5CM P OP2 sing N N 35
5CM P OP3 sing N N 36
5CM OP2 HOP2 sing N N 37
5CM OP3 HOP3 sing N N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
HOH O H1 sing N N 113
HOH O H2 sing N N 114
#
_ndb_struct_conf_na.entry_id 1R41
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A 5CM 8 7_555 -0.263 0.007 -0.235 -6.963 -6.098 0.930 1 A_DG1:5CM8_A A 1 ? A 8 ? 19 1
1 A DC 2 1_555 A DG 7 7_555 0.305 -0.002 -0.206 9.535 -6.994 2.739 2 A_DC2:DG7_A A 2 ? A 7 ? 19 1
1 A DG 3 1_555 A 5CM 6 7_555 -0.073 -0.127 -0.302 -8.137 -13.235 1.618 3 A_DG3:5CM6_A A 3 ? A 6 ? 19 1
1 A DC 4 1_555 A DG 5 7_555 0.295 -0.126 0.094 -4.720 -3.291 2.653 4 A_DC4:DG5_A A 4 ? A 5 ? 19 1
1 A DG 5 1_555 A DC 4 7_555 -0.295 -0.126 0.094 4.720 -3.291 2.653 5 A_DG5:DC4_A A 5 ? A 4 ? 19 1
1 A 5CM 6 1_555 A DG 3 7_555 0.073 -0.127 -0.302 8.137 -13.235 1.618 6 A_5CM6:DG3_A A 6 ? A 3 ? 19 1
1 A DG 7 1_555 A DC 2 7_555 -0.305 -0.002 -0.206 -9.535 -6.994 2.739 7 A_DG7:DC2_A A 7 ? A 2 ? 19 1
1 A 5CM 8 1_555 A DG 1 7_555 0.263 0.007 -0.235 6.963 -6.098 0.930 8 A_5CM8:DG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A 5CM 8 7_555 A DC 2 1_555 A DG 7 7_555 0.443 -1.172 3.064 -1.498 1.926 34.950 -2.215 -0.944 2.977 3.202
2.491 35.032 1 AA_DG1DC2:DG75CM8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A DC 2 1_555 A DG 7 7_555 A DG 3 1_555 A 5CM 6 7_555 -0.307 -1.567 3.691 1.655 13.718 30.159 -5.131 0.826 2.721 24.793
-2.991 33.107 2 AA_DC2DG3:5CM6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DG 3 1_555 A 5CM 6 7_555 A DC 4 1_555 A DG 5 7_555 0.104 -1.400 3.305 -3.127 -0.495 37.412 -2.109 -0.575 3.304 -0.770
4.864 37.541 3 AA_DG3DC4:DG55CM6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A DC 4 1_555 A DG 5 7_555 A DG 5 1_555 A DC 4 7_555 0.000 -2.170 3.054 0.000 6.154 19.953 -8.190 0.000 2.288 17.237
0.000 20.872 4 AA_DC4DG5:DC4DG5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DG 5 1_555 A DC 4 7_555 A 5CM 6 1_555 A DG 3 7_555 -0.104 -1.400 3.305 3.127 -0.495 37.412 -2.109 0.575 3.304 -0.770
-4.864 37.541 5 AA_DG55CM6:DG3DC4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A 5CM 6 1_555 A DG 3 7_555 A DG 7 1_555 A DC 2 7_555 0.307 -1.567 3.691 -1.655 13.718 30.159 -5.131 -0.826 2.721 24.793
2.991 33.107 6 AA_5CM6DG7:DC2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A DG 7 1_555 A DC 2 7_555 A 5CM 8 1_555 A DG 1 7_555 -0.443 -1.172 3.064 1.498 1.926 34.950 -2.215 0.944 2.977 3.202
-2.491 35.032 7 AA_DG75CM8:DG1DC2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_atom_sites.entry_id 1R41
_atom_sites.fract_transf_matrix[1][1] 0.023191
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023191
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.040371
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 29.002 19.538 -5.666 1.00 29.10 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 28.768 18.211 -5.166 1.00 27.31 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 29.997 17.521 -4.508 1.00 28.25 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 31.191 17.607 -5.311 1.00 26.07 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 30.426 18.233 -3.285 1.00 28.35 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 29.786 17.826 -2.113 1.00 32.50 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 31.902 17.823 -3.143 1.00 27.29 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 32.322 17.837 -4.606 1.00 27.21 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 32.759 19.153 -5.011 1.00 26.18 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 32.049 20.021 -5.825 1.00 26.73 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 32.748 21.024 -6.241 1.00 26.17 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 33.941 20.879 -5.506 1.00 24.99 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 35.174 21.693 -5.462 1.00 25.56 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 35.515 22.763 -5.986 1.00 26.72 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 36.121 21.068 -4.655 1.00 28.37 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 35.945 19.892 -4.000 1.00 27.77 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 37.002 19.551 -3.349 1.00 30.49 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 34.860 19.185 -3.986 1.00 26.54 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 33.920 19.728 -4.762 1.00 24.63 ? 1 DG A C4 1
ATOM 20 P P . DC A 1 2 ? 29.403 18.896 -0.872 1.00 35.73 ? 2 DC A P 1
ATOM 21 O OP1 . DC A 1 2 ? 28.409 18.106 -0.088 1.00 36.79 ? 2 DC A OP1 1
ATOM 22 O OP2 . DC A 1 2 ? 29.014 20.215 -1.474 1.00 32.95 ? 2 DC A OP2 1
ATOM 23 O "O5'" . DC A 1 2 ? 30.567 19.213 0.040 1.00 31.57 ? 2 DC A "O5'" 1
ATOM 24 C "C5'" . DC A 1 2 ? 31.295 18.286 0.600 1.00 33.41 ? 2 DC A "C5'" 1
ATOM 25 C "C4'" . DC A 1 2 ? 32.703 18.731 0.877 1.00 31.91 ? 2 DC A "C4'" 1
ATOM 26 O "O4'" . DC A 1 2 ? 33.383 18.904 -0.410 1.00 31.64 ? 2 DC A "O4'" 1
ATOM 27 C "C3'" . DC A 1 2 ? 32.915 20.048 1.601 1.00 33.72 ? 2 DC A "C3'" 1
ATOM 28 O "O3'" . DC A 1 2 ? 32.971 19.977 3.082 1.00 38.80 ? 2 DC A "O3'" 1
ATOM 29 C "C2'" . DC A 1 2 ? 34.369 20.318 1.229 1.00 32.83 ? 2 DC A "C2'" 1
ATOM 30 C "C1'" . DC A 1 2 ? 34.474 19.854 -0.246 1.00 31.03 ? 2 DC A "C1'" 1
ATOM 31 N N1 . DC A 1 2 ? 34.123 21.104 -1.010 1.00 28.11 ? 2 DC A N1 1
ATOM 32 C C2 . DC A 1 2 ? 35.069 21.955 -1.319 1.00 28.55 ? 2 DC A C2 1
ATOM 33 O O2 . DC A 1 2 ? 36.175 21.804 -0.786 1.00 33.12 ? 2 DC A O2 1
ATOM 34 N N3 . DC A 1 2 ? 34.892 22.942 -2.223 1.00 26.56 ? 2 DC A N3 1
ATOM 35 C C4 . DC A 1 2 ? 33.682 23.155 -2.758 1.00 29.26 ? 2 DC A C4 1
ATOM 36 N N4 . DC A 1 2 ? 33.478 24.259 -3.560 1.00 27.25 ? 2 DC A N4 1
ATOM 37 C C5 . DC A 1 2 ? 32.576 22.280 -2.491 1.00 28.28 ? 2 DC A C5 1
ATOM 38 C C6 . DC A 1 2 ? 32.837 21.279 -1.531 1.00 29.49 ? 2 DC A C6 1
ATOM 39 P P . DG A 1 3 ? 32.387 21.256 4.025 1.00 39.73 ? 3 DG A P 1
ATOM 40 O OP1 . DG A 1 3 ? 31.863 20.300 5.069 1.00 40.98 ? 3 DG A OP1 1
ATOM 41 O OP2 . DG A 1 3 ? 31.329 21.963 3.424 1.00 39.39 ? 3 DG A OP2 1
ATOM 42 O "O5'" . DG A 1 3 ? 33.699 22.085 4.201 1.00 38.30 ? 3 DG A "O5'" 1
ATOM 43 C "C5'" . DG A 1 3 ? 34.824 21.574 4.646 1.00 36.47 ? 3 DG A "C5'" 1
ATOM 44 C "C4'" . DG A 1 3 ? 35.946 22.571 4.572 1.00 36.52 ? 3 DG A "C4'" 1
ATOM 45 O "O4'" . DG A 1 3 ? 36.143 22.657 3.157 1.00 38.24 ? 3 DG A "O4'" 1
ATOM 46 C "C3'" . DG A 1 3 ? 35.814 24.047 4.959 1.00 38.17 ? 3 DG A "C3'" 1
ATOM 47 O "O3'" . DG A 1 3 ? 36.265 24.393 6.295 1.00 38.83 ? 3 DG A "O3'" 1
ATOM 48 C "C2'" . DG A 1 3 ? 36.823 24.729 4.065 1.00 35.73 ? 3 DG A "C2'" 1
ATOM 49 C "C1'" . DG A 1 3 ? 36.798 23.845 2.761 1.00 35.37 ? 3 DG A "C1'" 1
ATOM 50 N N9 . DG A 1 3 ? 35.832 24.553 1.888 1.00 30.85 ? 3 DG A N9 1
ATOM 51 C C8 . DG A 1 3 ? 34.514 24.204 1.632 1.00 28.74 ? 3 DG A C8 1
ATOM 52 N N7 . DG A 1 3 ? 34.054 24.827 0.660 1.00 27.54 ? 3 DG A N7 1
ATOM 53 C C5 . DG A 1 3 ? 35.030 25.757 0.370 1.00 26.60 ? 3 DG A C5 1
ATOM 54 C C6 . DG A 1 3 ? 35.030 26.894 -0.569 1.00 22.91 ? 3 DG A C6 1
ATOM 55 O O6 . DG A 1 3 ? 34.194 27.174 -1.368 1.00 24.28 ? 3 DG A O6 1
ATOM 56 N N1 . DG A 1 3 ? 36.111 27.616 -0.409 1.00 19.33 ? 3 DG A N1 1
ATOM 57 C C2 . DG A 1 3 ? 37.134 27.406 0.502 1.00 21.66 ? 3 DG A C2 1
ATOM 58 N N2 . DG A 1 3 ? 38.064 28.194 0.453 1.00 22.50 ? 3 DG A N2 1
ATOM 59 N N3 . DG A 1 3 ? 37.193 26.434 1.359 1.00 23.78 ? 3 DG A N3 1
ATOM 60 C C4 . DG A 1 3 ? 36.108 25.617 1.200 1.00 26.90 ? 3 DG A C4 1
ATOM 61 P P . DC A 1 4 ? 35.451 25.592 7.038 1.00 41.04 ? 4 DC A P 1
ATOM 62 O OP1 . DC A 1 4 ? 36.091 25.406 8.384 1.00 40.06 ? 4 DC A OP1 1
ATOM 63 O OP2 . DC A 1 4 ? 33.987 25.422 6.884 1.00 38.33 ? 4 DC A OP2 1
ATOM 64 O "O5'" . DC A 1 4 ? 36.183 26.909 6.511 1.00 36.12 ? 4 DC A "O5'" 1
ATOM 65 C "C5'" . DC A 1 4 ? 37.514 27.073 6.685 1.00 31.66 ? 4 DC A "C5'" 1
ATOM 66 C "C4'" . DC A 1 4 ? 37.953 28.380 6.085 1.00 31.19 ? 4 DC A "C4'" 1
ATOM 67 O "O4'" . DC A 1 4 ? 37.898 28.351 4.627 1.00 31.22 ? 4 DC A "O4'" 1
ATOM 68 C "C3'" . DC A 1 4 ? 36.907 29.456 6.437 1.00 29.12 ? 4 DC A "C3'" 1
ATOM 69 O "O3'" . DC A 1 4 ? 37.393 30.146 7.677 1.00 31.60 ? 4 DC A "O3'" 1
ATOM 70 C "C2'" . DC A 1 4 ? 37.176 30.443 5.317 1.00 27.40 ? 4 DC A "C2'" 1
ATOM 71 C "C1'" . DC A 1 4 ? 37.447 29.556 4.131 1.00 27.48 ? 4 DC A "C1'" 1
ATOM 72 N N1 . DC A 1 4 ? 36.165 29.272 3.384 1.00 24.46 ? 4 DC A N1 1
ATOM 73 C C2 . DC A 1 4 ? 35.835 30.140 2.401 1.00 20.59 ? 4 DC A C2 1
ATOM 74 O O2 . DC A 1 4 ? 36.591 31.087 2.266 1.00 22.37 ? 4 DC A O2 1
ATOM 75 N N3 . DC A 1 4 ? 34.686 29.981 1.629 1.00 21.11 ? 4 DC A N3 1
ATOM 76 C C4 . DC A 1 4 ? 33.866 28.978 1.962 1.00 22.19 ? 4 DC A C4 1
ATOM 77 N N4 . DC A 1 4 ? 32.664 28.814 1.287 1.00 22.32 ? 4 DC A N4 1
ATOM 78 C C5 . DC A 1 4 ? 34.180 28.063 3.042 1.00 21.40 ? 4 DC A C5 1
ATOM 79 C C6 . DC A 1 4 ? 35.367 28.249 3.691 1.00 22.69 ? 4 DC A C6 1
ATOM 80 P P . DG A 1 5 ? 36.455 31.152 8.392 1.00 30.29 ? 5 DG A P 1
ATOM 81 O OP1 . DG A 1 5 ? 37.153 31.316 9.594 1.00 34.80 ? 5 DG A OP1 1
ATOM 82 O OP2 . DG A 1 5 ? 35.060 30.819 8.567 1.00 31.93 ? 5 DG A OP2 1
ATOM 83 O "O5'" . DG A 1 5 ? 36.699 32.348 7.497 1.00 28.60 ? 5 DG A "O5'" 1
ATOM 84 C "C5'" . DG A 1 5 ? 35.658 33.285 7.378 1.00 24.45 ? 5 DG A "C5'" 1
ATOM 85 C "C4'" . DG A 1 5 ? 36.113 34.208 6.300 1.00 25.02 ? 5 DG A "C4'" 1
ATOM 86 O "O4'" . DG A 1 5 ? 36.087 33.444 5.013 1.00 24.06 ? 5 DG A "O4'" 1
ATOM 87 C "C3'" . DG A 1 5 ? 35.215 35.376 6.023 1.00 26.34 ? 5 DG A "C3'" 1
ATOM 88 O "O3'" . DG A 1 5 ? 35.582 36.512 6.830 1.00 27.71 ? 5 DG A "O3'" 1
ATOM 89 C "C2'" . DG A 1 5 ? 35.434 35.712 4.530 1.00 22.49 ? 5 DG A "C2'" 1
ATOM 90 C "C1'" . DG A 1 5 ? 35.616 34.303 3.974 1.00 22.65 ? 5 DG A "C1'" 1
ATOM 91 N N9 . DG A 1 5 ? 34.318 33.708 3.523 1.00 19.71 ? 5 DG A N9 1
ATOM 92 C C8 . DG A 1 5 ? 33.759 32.554 4.050 1.00 16.61 ? 5 DG A C8 1
ATOM 93 N N7 . DG A 1 5 ? 32.752 32.140 3.398 1.00 17.77 ? 5 DG A N7 1
ATOM 94 C C5 . DG A 1 5 ? 32.623 33.049 2.342 1.00 19.61 ? 5 DG A C5 1
ATOM 95 C C6 . DG A 1 5 ? 31.616 33.155 1.279 1.00 19.87 ? 5 DG A C6 1
ATOM 96 O O6 . DG A 1 5 ? 30.549 32.448 1.147 1.00 22.58 ? 5 DG A O6 1
ATOM 97 N N1 . DG A 1 5 ? 31.838 34.318 0.447 1.00 20.02 ? 5 DG A N1 1
ATOM 98 C C2 . DG A 1 5 ? 32.912 35.222 0.619 1.00 20.39 ? 5 DG A C2 1
ATOM 99 N N2 . DG A 1 5 ? 32.995 36.234 -0.355 1.00 19.15 ? 5 DG A N2 1
ATOM 100 N N3 . DG A 1 5 ? 33.791 35.143 1.598 1.00 20.69 ? 5 DG A N3 1
ATOM 101 C C4 . DG A 1 5 ? 33.562 34.080 2.462 1.00 19.59 ? 5 DG A C4 1
HETATM 102 N N1 . 5CM A 1 6 ? 31.753 37.844 2.829 1.00 21.84 ? 6 5CM A N1 1
HETATM 103 C C2 . 5CM A 1 6 ? 30.804 37.569 1.950 1.00 21.35 ? 6 5CM A C2 1
HETATM 104 N N3 . 5CM A 1 6 ? 29.960 36.485 2.124 1.00 21.31 ? 6 5CM A N3 1
HETATM 105 C C4 . 5CM A 1 6 ? 30.067 35.712 3.206 1.00 22.85 ? 6 5CM A C4 1
HETATM 106 C C5 . 5CM A 1 6 ? 31.028 36.006 4.230 1.00 20.91 ? 6 5CM A C5 1
HETATM 107 C C5A . 5CM A 1 6 ? 31.090 35.138 5.486 1.00 22.08 ? 6 5CM A C5A 1
HETATM 108 C C6 . 5CM A 1 6 ? 31.828 37.117 4.005 1.00 23.29 ? 6 5CM A C6 1
HETATM 109 O O2 . 5CM A 1 6 ? 30.703 38.292 0.982 1.00 25.49 ? 6 5CM A O2 1
HETATM 110 N N4 . 5CM A 1 6 ? 29.244 34.629 3.385 1.00 22.21 ? 6 5CM A N4 1
HETATM 111 C "C1'" . 5CM A 1 6 ? 32.744 38.866 2.492 1.00 25.13 ? 6 5CM A "C1'" 1
HETATM 112 C "C2'" . 5CM A 1 6 ? 32.103 40.185 3.099 1.00 24.69 ? 6 5CM A "C2'" 1
HETATM 113 C "C3'" . 5CM A 1 6 ? 32.818 40.170 4.500 1.00 28.16 ? 6 5CM A "C3'" 1
HETATM 114 C "C4'" . 5CM A 1 6 ? 34.183 39.559 4.214 1.00 28.28 ? 6 5CM A "C4'" 1
HETATM 115 O "O4'" . 5CM A 1 6 ? 33.913 38.554 3.231 1.00 26.64 ? 6 5CM A "O4'" 1
HETATM 116 O "O3'" . 5CM A 1 6 ? 32.806 41.602 4.896 1.00 31.23 ? 6 5CM A "O3'" 1
HETATM 117 C "C5'" . 5CM A 1 6 ? 34.822 38.982 5.427 1.00 29.01 ? 6 5CM A "C5'" 1
HETATM 118 O "O5'" . 5CM A 1 6 ? 33.957 38.412 6.180 1.00 26.75 ? 6 5CM A "O5'" 1
HETATM 119 P P . 5CM A 1 6 ? 34.409 37.429 7.369 1.00 29.72 ? 6 5CM A P 1
HETATM 120 O OP1 . 5CM A 1 6 ? 35.219 38.405 8.260 1.00 32.33 ? 6 5CM A OP1 1
HETATM 121 O OP2 . 5CM A 1 6 ? 33.286 36.884 7.857 1.00 27.15 ? 6 5CM A OP2 1
ATOM 122 P P . DG A 1 7 ? 31.482 42.084 5.811 1.00 32.23 ? 7 DG A P 1
ATOM 123 O OP1 . DG A 1 7 ? 32.028 43.521 6.376 1.00 35.30 ? 7 DG A OP1 1
ATOM 124 O OP2 . DG A 1 7 ? 30.781 41.058 6.621 1.00 33.50 ? 7 DG A OP2 1
ATOM 125 O "O5'" . DG A 1 7 ? 30.354 42.261 4.666 1.00 29.77 ? 7 DG A "O5'" 1
ATOM 126 C "C5'" . DG A 1 7 ? 30.534 43.095 3.513 1.00 29.08 ? 7 DG A "C5'" 1
ATOM 127 C "C4'" . DG A 1 7 ? 29.273 43.007 2.646 1.00 31.42 ? 7 DG A "C4'" 1
ATOM 128 O "O4'" . DG A 1 7 ? 29.162 41.623 2.209 1.00 28.96 ? 7 DG A "O4'" 1
ATOM 129 C "C3'" . DG A 1 7 ? 27.974 43.199 3.384 1.00 31.10 ? 7 DG A "C3'" 1
ATOM 130 O "O3'" . DG A 1 7 ? 27.420 44.413 3.238 1.00 35.30 ? 7 DG A "O3'" 1
ATOM 131 C "C2'" . DG A 1 7 ? 26.999 42.296 2.619 1.00 28.64 ? 7 DG A "C2'" 1
ATOM 132 C "C1'" . DG A 1 7 ? 27.887 41.299 1.974 1.00 27.65 ? 7 DG A "C1'" 1
ATOM 133 N N9 . DG A 1 7 ? 27.694 40.031 2.690 1.00 25.27 ? 7 DG A N9 1
ATOM 134 C C8 . DG A 1 7 ? 28.469 39.472 3.657 1.00 23.03 ? 7 DG A C8 1
ATOM 135 N N7 . DG A 1 7 ? 28.048 38.297 4.039 1.00 23.39 ? 7 DG A N7 1
ATOM 136 C C5 . DG A 1 7 ? 26.857 38.062 3.383 1.00 23.83 ? 7 DG A C5 1
ATOM 137 C C6 . DG A 1 7 ? 25.870 36.960 3.417 1.00 22.61 ? 7 DG A C6 1
ATOM 138 O O6 . DG A 1 7 ? 25.832 35.972 4.105 1.00 24.41 ? 7 DG A O6 1
ATOM 139 N N1 . DG A 1 7 ? 24.935 37.102 2.396 1.00 22.54 ? 7 DG A N1 1
ATOM 140 C C2 . DG A 1 7 ? 24.837 38.223 1.674 1.00 21.39 ? 7 DG A C2 1
ATOM 141 N N2 . DG A 1 7 ? 23.758 38.268 0.859 1.00 22.46 ? 7 DG A N2 1
ATOM 142 N N3 . DG A 1 7 ? 25.644 39.281 1.764 1.00 21.83 ? 7 DG A N3 1
ATOM 143 C C4 . DG A 1 7 ? 26.583 39.145 2.528 1.00 24.75 ? 7 DG A C4 1
HETATM 144 N N1 . 5CM A 1 8 ? 22.684 40.903 3.635 1.00 30.97 ? 8 5CM A N1 1
HETATM 145 C C2 . 5CM A 1 8 ? 22.085 39.701 3.684 1.00 28.98 ? 8 5CM A C2 1
HETATM 146 N N3 . 5CM A 1 8 ? 22.641 38.754 4.450 1.00 28.92 ? 8 5CM A N3 1
HETATM 147 C C4 . 5CM A 1 8 ? 23.666 39.053 5.231 1.00 25.80 ? 8 5CM A C4 1
HETATM 148 C C5 . 5CM A 1 8 ? 24.245 40.339 5.231 1.00 27.01 ? 8 5CM A C5 1
HETATM 149 C C5A . 5CM A 1 8 ? 25.471 40.619 5.979 1.00 24.76 ? 8 5CM A C5A 1
HETATM 150 C C6 . 5CM A 1 8 ? 23.659 41.225 4.480 1.00 27.29 ? 8 5CM A C6 1
HETATM 151 O O2 . 5CM A 1 8 ? 20.981 39.497 3.013 1.00 25.44 ? 8 5CM A O2 1
HETATM 152 N N4 . 5CM A 1 8 ? 24.096 38.085 5.914 1.00 24.77 ? 8 5CM A N4 1
HETATM 153 C "C1'" . 5CM A 1 8 ? 22.165 41.881 2.523 1.00 35.35 ? 8 5CM A "C1'" 1
HETATM 154 C "C2'" . 5CM A 1 8 ? 21.200 42.875 3.191 1.00 36.44 ? 8 5CM A "C2'" 1
HETATM 155 C "C3'" . 5CM A 1 8 ? 21.870 44.270 3.082 1.00 41.62 ? 8 5CM A "C3'" 1
HETATM 156 C "C4'" . 5CM A 1 8 ? 23.277 44.067 2.431 1.00 37.56 ? 8 5CM A "C4'" 1
HETATM 157 O "O4'" . 5CM A 1 8 ? 23.221 42.684 2.038 1.00 39.63 ? 8 5CM A "O4'" 1
HETATM 158 O "O3'" . 5CM A 1 8 ? 20.751 44.374 2.044 1.00 44.72 ? 8 5CM A "O3'" 1
HETATM 159 C "C5'" . 5CM A 1 8 ? 24.343 43.791 3.416 1.00 38.57 ? 8 5CM A "C5'" 1
HETATM 160 O "O5'" . 5CM A 1 8 ? 24.999 44.930 3.692 1.00 37.51 ? 8 5CM A "O5'" 1
HETATM 161 P P . 5CM A 1 8 ? 26.406 44.894 4.340 1.00 38.61 ? 8 5CM A P 1
HETATM 162 O OP1 . 5CM A 1 8 ? 26.679 46.384 4.358 1.00 38.13 ? 8 5CM A OP1 1
HETATM 163 O OP2 . 5CM A 1 8 ? 25.482 44.155 5.148 1.00 37.35 ? 8 5CM A OP2 1
HETATM 164 O O . HOH B 2 . ? 36.084 36.854 1.226 1.00 22.69 ? 101 HOH A O 1
HETATM 165 O O . HOH B 2 . ? 28.577 37.337 6.645 1.00 26.51 ? 102 HOH A O 1
HETATM 166 O O . HOH B 2 . ? 31.533 24.907 -0.209 1.00 43.91 ? 103 HOH A O 1
HETATM 167 O O . HOH B 2 . ? 31.601 27.011 -1.859 1.00 37.62 ? 104 HOH A O 1
HETATM 168 O O . HOH B 2 . ? 31.084 30.140 4.269 1.00 35.41 ? 105 HOH A O 1
HETATM 169 O O . HOH B 2 . ? 29.582 30.168 2.034 1.00 39.76 ? 106 HOH A O 1
HETATM 170 O O . HOH B 2 . ? 30.775 38.529 7.500 1.00 44.57 ? 107 HOH A O 1
HETATM 171 O O . HOH B 2 . ? 29.385 35.099 8.927 1.00 57.44 ? 108 HOH A O 1
HETATM 172 O O . HOH B 2 . ? 28.579 31.993 5.327 1.00 53.46 ? 109 HOH A O 1
HETATM 173 O O . HOH B 2 . ? 30.844 26.880 2.027 1.00 43.21 ? 110 HOH A O 1
HETATM 174 O O . HOH B 2 . ? 26.980 34.892 6.084 1.00 38.08 ? 111 HOH A O 1
HETATM 175 O O . HOH B 2 . ? 26.118 38.047 7.984 1.00 46.94 ? 112 HOH A O 1
HETATM 176 O O . HOH B 2 . ? 34.337 24.830 -7.317 1.00 38.18 ? 113 HOH A O 1
HETATM 177 O O . HOH B 2 . ? 31.563 23.212 -7.594 1.00 42.28 ? 114 HOH A O 1
HETATM 178 O O . HOH B 2 . ? 37.154 38.734 2.506 1.00 35.09 ? 115 HOH A O 1
HETATM 179 O O . HOH B 2 . ? 36.034 41.335 2.112 1.00 52.09 ? 116 HOH A O 1
HETATM 180 O O . HOH B 2 . ? 24.568 41.198 -0.265 1.00 48.64 ? 117 HOH A O 1
HETATM 181 O O . HOH B 2 . ? 29.556 37.812 10.692 1.00 53.51 ? 118 HOH A O 1
HETATM 182 O O . HOH B 2 . ? 38.418 38.771 4.699 1.00 43.99 ? 119 HOH A O 1
#