data_1QZL
#
_entry.id 1QZL
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.386
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1QZL pdb_00001qzl 10.2210/pdb1qzl/pdb
NDB UD0042 ? ?
RCSB RCSB020262 ? ?
WWPDB D_1000020262 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2003-10-21
2 'Structure model' 1 1 2008-04-29
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-14
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' diffrn_source
5 4 'Structure model' struct_conn
6 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site'
4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
6 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'
10 4 'Structure model' '_struct_conn.ptnr1_symmetry'
11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'
17 4 'Structure model' '_struct_conn.ptnr2_symmetry'
18 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
19 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
20 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1QZL
_pdbx_database_status.recvd_initial_deposition_date 2003-09-17
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1QYK 'GCATGCT + BARIUM' unspecified
PDB 1QYL 'GCATGCT + Vanadium' unspecified
PDB 1R2O 'GCATGCT + Ni2+' unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Cardin, C.J.' 1
'Gan, Y.' 2
'Thorpe, J.H.' 3
'Teixeira, S.C.M.' 4
'Gale, B.C.' 5
'Moraes, M.I.A.' 6
#
_citation.id primary
_citation.title 'Metal Ion Distribution and Stabilisation of the DNA Quadruplex Structure Formed by d(GCATGCT)'
_citation.journal_abbrev 'To be published'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year ?
_citation.journal_id_ASTM ?
_citation.country ?
_citation.journal_id_ISSN ?
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Cardin, C.J.' 1 ?
primary 'Gan, Y.' 2 ?
primary 'Thorpe, J.H.' 3 ?
primary 'Teixeira, S.C.M.' 4 ?
primary 'Gale, B.C.' 5 ?
primary 'Moraes, M.I.A.' 6 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*GP*CP*AP*TP*GP*CP*T)-3'" 2113.410 1 ? ? ? ?
2 non-polymer syn 'COBALT (II) ION' 58.933 1 ? ? ? ?
3 water nat water 18.015 1 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DA)(DT)(DG)(DC)(DT)'
_entity_poly.pdbx_seq_one_letter_code_can GCATGCT
_entity_poly.pdbx_strand_id X
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'COBALT (II) ION' CO
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DC n
1 3 DA n
1 4 DT n
1 5 DG n
1 6 DC n
1 7 DT n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G X . n
A 1 2 DC 2 2 2 DC C X . n
A 1 3 DA 3 3 3 DA A X . n
A 1 4 DT 4 4 4 DT T X . n
A 1 5 DG 5 5 5 DG G X . n
A 1 6 DC 6 6 6 DC C X . n
A 1 7 DT 7 7 7 DT T X . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CO 1 101 101 CO CO X .
C 3 HOH 1 102 102 HOH HOH X .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.1.24 ? 1
MOSFLM 'data reduction' . ? 2
CCP4 'data scaling' '(SCALA)' ? 3
XTALVIEW refinement . ? 4
#
_cell.entry_id 1QZL
_cell.length_a 24.789
_cell.length_b 24.789
_cell.length_c 91.818
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1QZL
_symmetry.space_group_name_H-M 'P 62 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 180
#
_exptl.entry_id 1QZL
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.86
_exptl_crystal.density_percent_sol 33.74
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp 290
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.5
_exptl_crystal_grow.pdbx_details
'sodium cacodylate, Cobalt dichloride, potassium chloride, MPD, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 290K'
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 'sodium cacodylate' ? ? ?
1 2 1 'Cobalt dichloride' ? ? ?
1 3 1 'potassium chloride' ? ? ?
1 4 1 MPD ? ? ?
1 5 1 H2O ? ? ?
1 6 2 'sodium cacodylate' ? ? ?
1 7 2 'Cobalt dichloride' ? ? ?
1 8 2 MPD ? ? ?
1 9 2 H2O ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type MARRESEARCH
_diffrn_detector.pdbx_collection_date 2003-08-19
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.8416
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7B'
_diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG'
_diffrn_source.pdbx_synchrotron_beamline BW7B
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.8416
#
_reflns.entry_id 1QZL
_reflns.observed_criterion_sigma_F 0
_reflns.observed_criterion_sigma_I 0
_reflns.d_resolution_high 2.85
_reflns.d_resolution_low 30.606
_reflns.number_all ?
_reflns.number_obs 522
_reflns.percent_possible_obs 96.7
_reflns.pdbx_Rmerge_I_obs 0.1573
_reflns.pdbx_Rsym_value 0.1507
_reflns.pdbx_netI_over_sigmaI 4.1
_reflns.B_iso_Wilson_estimate 41.857
_reflns.pdbx_redundancy 6.6
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 2.85
_reflns_shell.d_res_low 3.00
_reflns_shell.percent_possible_all 99.5
_reflns_shell.Rmerge_I_obs 0.288
_reflns_shell.pdbx_Rsym_value 0.288
_reflns_shell.meanI_over_sigI_obs 2.1
_reflns_shell.pdbx_redundancy 6.8
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 69
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 1QZL
_refine.ls_number_reflns_obs 489
_refine.ls_number_reflns_all 522
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 30.57
_refine.ls_d_res_high 2.85
_refine.ls_percent_reflns_obs 98.46
_refine.ls_R_factor_obs 0.24375
_refine.ls_R_factor_all 0.24375
_refine.ls_R_factor_R_work 0.23978
_refine.ls_R_factor_R_free 0.33473
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.5
_refine.ls_number_reflns_R_free 23
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.886
_refine.correlation_coeff_Fo_to_Fc_free 0.819
_refine.B_iso_mean 37.898
_refine.aniso_B[1][1] 1.08
_refine.aniso_B[2][2] 1.08
_refine.aniso_B[3][3] -1.62
_refine.aniso_B[1][2] 0.54
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'BABINET MODEL WITH MASK'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 1.047
_refine.pdbx_overall_ESU_R_Free 0.525
_refine.overall_SU_ML 0.165
_refine.overall_SU_B 7.852
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 140
_refine_hist.pdbx_number_atoms_ligand 1
_refine_hist.number_atoms_solvent 1
_refine_hist.number_atoms_total 142
_refine_hist.d_res_high 2.85
_refine_hist.d_res_low 30.57
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.021 0.021 ? 156 'X-RAY DIFFRACTION' ?
r_bond_other_d 0.002 0.020 ? 69 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 2.909 3.000 ? 239 'X-RAY DIFFRACTION' ?
r_angle_other_deg 1.421 3.000 ? 173 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.141 0.200 ? 21 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.010 0.020 ? 73 'X-RAY DIFFRACTION' ?
r_gen_planes_other 0.001 0.020 ? 2 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.124 0.200 ? 11 'X-RAY DIFFRACTION' ?
r_nbd_other 0.227 0.200 ? 59 'X-RAY DIFFRACTION' ?
r_nbtor_other 0.115 0.200 ? 33 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.210 0.200 ? 2 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.112 0.200 ? 7 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other 0.298 0.200 ? 14 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.125 0.200 ? 7 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 2.85
_refine_ls_shell.d_res_low 2.924
_refine_ls_shell.number_reflns_R_work 27
_refine_ls_shell.R_factor_R_work 0.202
_refine_ls_shell.percent_reflns_obs ?
_refine_ls_shell.R_factor_R_free 0.239
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 2
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_database_PDB_matrix.entry_id 1QZL
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1QZL
_struct.title 'GCATGCT + Cobalt'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1QZL
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'DNA quadruplex, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1QZL
_struct_ref.pdbx_db_accession 1QZL
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1QZL
_struct_ref_seq.pdbx_strand_id X
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 7
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1QZL
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 7
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 7
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 4_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
-1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038
0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 30.6060000000
4 'crystal symmetry operation' 12_555 x,x-y,-z+1/3 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038
-0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 30.6060000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A DG 1 N7 ? ? ? 1_555 B CO . CO ? ? X DG 1 X CO 101 1_555 ? ? ? ? ? ? ? 2.512 ? ?
metalc2 metalc ? ? A DG 5 N7 ? ? ? 12_555 B CO . CO ? ? X DG 5 X CO 101 1_555 ? ? ? ? ? ? ? 2.327 ? ?
#
_struct_conn_type.id metalc
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
_pdbx_struct_conn_angle.id 1
_pdbx_struct_conn_angle.ptnr1_label_atom_id N7
_pdbx_struct_conn_angle.ptnr1_label_alt_id ?
_pdbx_struct_conn_angle.ptnr1_label_asym_id A
_pdbx_struct_conn_angle.ptnr1_label_comp_id DG
_pdbx_struct_conn_angle.ptnr1_label_seq_id 1
_pdbx_struct_conn_angle.ptnr1_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr1_auth_asym_id X
_pdbx_struct_conn_angle.ptnr1_auth_comp_id DG
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 1
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr1_symmetry 1_555
_pdbx_struct_conn_angle.ptnr2_label_atom_id CO
_pdbx_struct_conn_angle.ptnr2_label_alt_id ?
_pdbx_struct_conn_angle.ptnr2_label_asym_id B
_pdbx_struct_conn_angle.ptnr2_label_comp_id CO
_pdbx_struct_conn_angle.ptnr2_label_seq_id .
_pdbx_struct_conn_angle.ptnr2_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr2_auth_asym_id X
_pdbx_struct_conn_angle.ptnr2_auth_comp_id CO
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 101
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr2_symmetry 1_555
_pdbx_struct_conn_angle.ptnr3_label_atom_id N7
_pdbx_struct_conn_angle.ptnr3_label_alt_id ?
_pdbx_struct_conn_angle.ptnr3_label_asym_id A
_pdbx_struct_conn_angle.ptnr3_label_comp_id DG
_pdbx_struct_conn_angle.ptnr3_label_seq_id 5
_pdbx_struct_conn_angle.ptnr3_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr3_auth_asym_id X
_pdbx_struct_conn_angle.ptnr3_auth_comp_id DG
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 5
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr3_symmetry 12_555
_pdbx_struct_conn_angle.value 176.3
_pdbx_struct_conn_angle.value_esd ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id X
_struct_site.pdbx_auth_comp_id CO
_struct_site.pdbx_auth_seq_id 101
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 2
_struct_site.details 'BINDING SITE FOR RESIDUE CO X 101'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 2 DG A 1 ? DG X 1 . ? 1_555 ?
2 AC1 2 DG A 5 ? DG X 5 . ? 12_555 ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "O3'" X DG 1 ? ? "C3'" X DG 1 ? ? 1.380 1.419 -0.039 0.006 N
2 1 C5 X DG 1 ? ? N7 X DG 1 ? ? 1.328 1.388 -0.060 0.006 N
3 1 N1 X DC 2 ? ? C6 X DC 2 ? ? 1.407 1.367 0.040 0.006 N
4 1 "O3'" X DT 4 ? ? "C3'" X DT 4 ? ? 1.373 1.419 -0.046 0.006 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 C6 X DG 1 ? ? C5 X DG 1 ? ? N7 X DG 1 ? ? 125.59 130.40 -4.81 0.60 N
2 1 N1 X DG 1 ? ? C6 X DG 1 ? ? O6 X DG 1 ? ? 123.62 119.90 3.72 0.60 N
3 1 C5 X DG 1 ? ? C6 X DG 1 ? ? O6 X DG 1 ? ? 124.41 128.60 -4.19 0.60 N
4 1 "C3'" X DG 1 ? ? "O3'" X DG 1 ? ? P X DC 2 ? ? 128.43 119.70 8.73 1.20 Y
5 1 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? "C2'" X DG 5 ? ? 111.10 106.80 4.30 0.50 N
6 1 N1 X DG 5 ? ? C6 X DG 5 ? ? O6 X DG 5 ? ? 124.08 119.90 4.18 0.60 N
7 1 C5 X DG 5 ? ? C6 X DG 5 ? ? O6 X DG 5 ? ? 124.57 128.60 -4.03 0.60 N
8 1 "O5'" X DC 6 ? ? P X DC 6 ? ? OP1 X DC 6 ? ? 98.40 105.70 -7.30 0.90 N
9 1 "O4'" X DC 6 ? ? "C4'" X DC 6 ? ? "C3'" X DC 6 ? ? 109.66 106.00 3.66 0.60 N
10 1 "O4'" X DC 6 ? ? "C1'" X DC 6 ? ? N1 X DC 6 ? ? 112.74 108.30 4.44 0.30 N
11 1 N1 X DC 6 ? ? C2 X DC 6 ? ? O2 X DC 6 ? ? 115.13 118.90 -3.77 0.60 N
12 1 "C3'" X DC 6 ? ? "O3'" X DC 6 ? ? P X DT 7 ? ? 132.74 119.70 13.04 1.20 Y
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id X
_pdbx_struct_special_symmetry.auth_comp_id HOH
_pdbx_struct_special_symmetry.auth_seq_id 102
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id C
_pdbx_struct_special_symmetry.label_comp_id HOH
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
CO CO CO N N 1
DA OP3 O N N 2
DA P P N N 3
DA OP1 O N N 4
DA OP2 O N N 5
DA "O5'" O N N 6
DA "C5'" C N N 7
DA "C4'" C N R 8
DA "O4'" O N N 9
DA "C3'" C N S 10
DA "O3'" O N N 11
DA "C2'" C N N 12
DA "C1'" C N R 13
DA N9 N Y N 14
DA C8 C Y N 15
DA N7 N Y N 16
DA C5 C Y N 17
DA C6 C Y N 18
DA N6 N N N 19
DA N1 N Y N 20
DA C2 C Y N 21
DA N3 N Y N 22
DA C4 C Y N 23
DA HOP3 H N N 24
DA HOP2 H N N 25
DA "H5'" H N N 26
DA "H5''" H N N 27
DA "H4'" H N N 28
DA "H3'" H N N 29
DA "HO3'" H N N 30
DA "H2'" H N N 31
DA "H2''" H N N 32
DA "H1'" H N N 33
DA H8 H N N 34
DA H61 H N N 35
DA H62 H N N 36
DA H2 H N N 37
DC OP3 O N N 38
DC P P N N 39
DC OP1 O N N 40
DC OP2 O N N 41
DC "O5'" O N N 42
DC "C5'" C N N 43
DC "C4'" C N R 44
DC "O4'" O N N 45
DC "C3'" C N S 46
DC "O3'" O N N 47
DC "C2'" C N N 48
DC "C1'" C N R 49
DC N1 N N N 50
DC C2 C N N 51
DC O2 O N N 52
DC N3 N N N 53
DC C4 C N N 54
DC N4 N N N 55
DC C5 C N N 56
DC C6 C N N 57
DC HOP3 H N N 58
DC HOP2 H N N 59
DC "H5'" H N N 60
DC "H5''" H N N 61
DC "H4'" H N N 62
DC "H3'" H N N 63
DC "HO3'" H N N 64
DC "H2'" H N N 65
DC "H2''" H N N 66
DC "H1'" H N N 67
DC H41 H N N 68
DC H42 H N N 69
DC H5 H N N 70
DC H6 H N N 71
DG OP3 O N N 72
DG P P N N 73
DG OP1 O N N 74
DG OP2 O N N 75
DG "O5'" O N N 76
DG "C5'" C N N 77
DG "C4'" C N R 78
DG "O4'" O N N 79
DG "C3'" C N S 80
DG "O3'" O N N 81
DG "C2'" C N N 82
DG "C1'" C N R 83
DG N9 N Y N 84
DG C8 C Y N 85
DG N7 N Y N 86
DG C5 C Y N 87
DG C6 C N N 88
DG O6 O N N 89
DG N1 N N N 90
DG C2 C N N 91
DG N2 N N N 92
DG N3 N N N 93
DG C4 C Y N 94
DG HOP3 H N N 95
DG HOP2 H N N 96
DG "H5'" H N N 97
DG "H5''" H N N 98
DG "H4'" H N N 99
DG "H3'" H N N 100
DG "HO3'" H N N 101
DG "H2'" H N N 102
DG "H2''" H N N 103
DG "H1'" H N N 104
DG H8 H N N 105
DG H1 H N N 106
DG H21 H N N 107
DG H22 H N N 108
DT OP3 O N N 109
DT P P N N 110
DT OP1 O N N 111
DT OP2 O N N 112
DT "O5'" O N N 113
DT "C5'" C N N 114
DT "C4'" C N R 115
DT "O4'" O N N 116
DT "C3'" C N S 117
DT "O3'" O N N 118
DT "C2'" C N N 119
DT "C1'" C N R 120
DT N1 N N N 121
DT C2 C N N 122
DT O2 O N N 123
DT N3 N N N 124
DT C4 C N N 125
DT O4 O N N 126
DT C5 C N N 127
DT C7 C N N 128
DT C6 C N N 129
DT HOP3 H N N 130
DT HOP2 H N N 131
DT "H5'" H N N 132
DT "H5''" H N N 133
DT "H4'" H N N 134
DT "H3'" H N N 135
DT "HO3'" H N N 136
DT "H2'" H N N 137
DT "H2''" H N N 138
DT "H1'" H N N 139
DT H3 H N N 140
DT H71 H N N 141
DT H72 H N N 142
DT H73 H N N 143
DT H6 H N N 144
HOH O O N N 145
HOH H1 H N N 146
HOH H2 H N N 147
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
#
_atom_sites.entry_id 1QZL
_atom_sites.fract_transf_matrix[1][1] 0.040340
_atom_sites.fract_transf_matrix[1][2] 0.023290
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.046581
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.010891
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
CO
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 6.964 4.659 9.137 1.00 39.26 ? 1 DG X "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 6.616 5.546 10.179 1.00 37.77 ? 1 DG X "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 6.812 4.876 11.528 1.00 39.88 ? 1 DG X "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 5.553 4.352 12.013 1.00 41.11 ? 1 DG X "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 7.721 3.674 11.573 1.00 41.76 ? 1 DG X "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 8.217 3.728 12.860 1.00 49.08 ? 1 DG X "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 6.804 2.499 11.303 1.00 39.30 ? 1 DG X "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 5.485 2.947 11.905 1.00 39.89 ? 1 DG X "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 4.275 2.614 11.121 1.00 37.58 ? 1 DG X N9 1
ATOM 10 C C8 . DG A 1 1 ? 4.215 2.561 9.774 1.00 34.80 ? 1 DG X C8 1
ATOM 11 N N7 . DG A 1 1 ? 3.046 2.271 9.338 1.00 34.95 ? 1 DG X N7 1
ATOM 12 C C5 . DG A 1 1 ? 2.292 2.122 10.421 1.00 23.91 ? 1 DG X C5 1
ATOM 13 C C6 . DG A 1 1 ? 0.936 1.807 10.427 1.00 32.67 ? 1 DG X C6 1
ATOM 14 O O6 . DG A 1 1 ? 0.252 1.591 9.394 1.00 35.06 ? 1 DG X O6 1
ATOM 15 N N1 . DG A 1 1 ? 0.414 1.736 11.743 1.00 34.81 ? 1 DG X N1 1
ATOM 16 C C2 . DG A 1 1 ? 1.218 1.935 12.892 1.00 35.52 ? 1 DG X C2 1
ATOM 17 N N2 . DG A 1 1 ? 0.597 1.833 14.087 1.00 24.70 ? 1 DG X N2 1
ATOM 18 N N3 . DG A 1 1 ? 2.539 2.270 12.867 1.00 35.81 ? 1 DG X N3 1
ATOM 19 C C4 . DG A 1 1 ? 2.993 2.344 11.565 1.00 33.17 ? 1 DG X C4 1
ATOM 20 P P . DC A 1 2 ? 9.044 2.604 13.661 1.00 52.35 ? 2 DC X P 1
ATOM 21 O OP1 . DC A 1 2 ? 9.470 3.364 14.883 1.00 49.89 ? 2 DC X OP1 1
ATOM 22 O OP2 . DC A 1 2 ? 9.954 1.840 12.760 1.00 40.39 ? 2 DC X OP2 1
ATOM 23 O "O5'" . DC A 1 2 ? 7.902 1.540 14.041 1.00 45.20 ? 2 DC X "O5'" 1
ATOM 24 C "C5'" . DC A 1 2 ? 7.484 1.379 15.356 1.00 42.63 ? 2 DC X "C5'" 1
ATOM 25 C "C4'" . DC A 1 2 ? 6.416 0.318 15.401 1.00 41.97 ? 2 DC X "C4'" 1
ATOM 26 O "O4'" . DC A 1 2 ? 5.446 0.446 14.319 1.00 40.14 ? 2 DC X "O4'" 1
ATOM 27 C "C3'" . DC A 1 2 ? 6.953 -1.078 15.279 1.00 39.94 ? 2 DC X "C3'" 1
ATOM 28 O "O3'" . DC A 1 2 ? 6.968 -1.591 16.600 1.00 46.47 ? 2 DC X "O3'" 1
ATOM 29 C "C2'" . DC A 1 2 ? 5.887 -1.772 14.419 1.00 39.73 ? 2 DC X "C2'" 1
ATOM 30 C "C1'" . DC A 1 2 ? 4.756 -0.751 14.231 1.00 31.78 ? 2 DC X "C1'" 1
ATOM 31 N N1 . DC A 1 2 ? 4.138 -0.864 12.932 1.00 30.64 ? 2 DC X N1 1
ATOM 32 C C2 . DC A 1 2 ? 2.767 -1.179 12.795 1.00 30.71 ? 2 DC X C2 1
ATOM 33 O O2 . DC A 1 2 ? 2.067 -1.314 13.781 1.00 29.81 ? 2 DC X O2 1
ATOM 34 N N3 . DC A 1 2 ? 2.238 -1.320 11.530 1.00 30.75 ? 2 DC X N3 1
ATOM 35 C C4 . DC A 1 2 ? 3.034 -1.135 10.433 1.00 26.09 ? 2 DC X C4 1
ATOM 36 N N4 . DC A 1 2 ? 2.493 -1.298 9.257 1.00 14.47 ? 2 DC X N4 1
ATOM 37 C C5 . DC A 1 2 ? 4.416 -0.810 10.539 1.00 24.33 ? 2 DC X C5 1
ATOM 38 C C6 . DC A 1 2 ? 4.936 -0.702 11.784 1.00 25.29 ? 2 DC X C6 1
ATOM 39 P P . DA A 1 3 ? 8.273 -2.218 17.300 1.00 45.53 ? 3 DA X P 1
ATOM 40 O OP1 . DA A 1 3 ? 9.446 -1.357 16.876 1.00 41.17 ? 3 DA X OP1 1
ATOM 41 O OP2 . DA A 1 3 ? 8.162 -3.708 17.054 1.00 34.53 ? 3 DA X OP2 1
ATOM 42 O "O5'" . DA A 1 3 ? 8.031 -1.885 18.862 1.00 42.55 ? 3 DA X "O5'" 1
ATOM 43 C "C5'" . DA A 1 3 ? 7.907 -0.520 19.348 1.00 35.43 ? 3 DA X "C5'" 1
ATOM 44 C "C4'" . DA A 1 3 ? 6.865 -0.453 20.470 1.00 33.33 ? 3 DA X "C4'" 1
ATOM 45 O "O4'" . DA A 1 3 ? 5.555 -0.902 20.003 1.00 33.06 ? 3 DA X "O4'" 1
ATOM 46 C "C3'" . DA A 1 3 ? 7.213 -1.324 21.665 1.00 29.36 ? 3 DA X "C3'" 1
ATOM 47 O "O3'" . DA A 1 3 ? 6.977 -0.690 22.919 1.00 29.55 ? 3 DA X "O3'" 1
ATOM 48 C "C2'" . DA A 1 3 ? 6.361 -2.539 21.352 1.00 29.78 ? 3 DA X "C2'" 1
ATOM 49 C "C1'" . DA A 1 3 ? 5.102 -1.925 20.842 1.00 31.01 ? 3 DA X "C1'" 1
ATOM 50 N N9 . DA A 1 3 ? 4.324 -2.836 20.036 1.00 37.17 ? 3 DA X N9 1
ATOM 51 C C8 . DA A 1 3 ? 4.399 -2.948 18.664 1.00 38.42 ? 3 DA X C8 1
ATOM 52 N N7 . DA A 1 3 ? 3.584 -3.875 18.173 1.00 40.99 ? 3 DA X N7 1
ATOM 53 C C5 . DA A 1 3 ? 2.961 -4.407 19.285 1.00 33.24 ? 3 DA X C5 1
ATOM 54 C C6 . DA A 1 3 ? 1.978 -5.391 19.382 1.00 35.27 ? 3 DA X C6 1
ATOM 55 N N6 . DA A 1 3 ? 1.511 -5.992 18.279 1.00 33.42 ? 3 DA X N6 1
ATOM 56 N N1 . DA A 1 3 ? 1.520 -5.714 20.637 1.00 35.56 ? 3 DA X N1 1
ATOM 57 C C2 . DA A 1 3 ? 2.047 -5.041 21.695 1.00 32.58 ? 3 DA X C2 1
ATOM 58 N N3 . DA A 1 3 ? 2.962 -4.029 21.708 1.00 32.60 ? 3 DA X N3 1
ATOM 59 C C4 . DA A 1 3 ? 3.390 -3.775 20.455 1.00 34.94 ? 3 DA X C4 1
ATOM 60 P P . DT A 1 4 ? 8.047 0.428 23.372 1.00 40.28 ? 4 DT X P 1
ATOM 61 O OP1 . DT A 1 4 ? 7.490 1.787 23.327 1.00 37.55 ? 4 DT X OP1 1
ATOM 62 O OP2 . DT A 1 4 ? 9.267 0.170 22.542 1.00 40.13 ? 4 DT X OP2 1
ATOM 63 O "O5'" . DT A 1 4 ? 8.379 0.062 24.912 1.00 41.37 ? 4 DT X "O5'" 1
ATOM 64 C "C5'" . DT A 1 4 ? 8.912 -1.261 25.239 1.00 41.13 ? 4 DT X "C5'" 1
ATOM 65 C "C4'" . DT A 1 4 ? 8.332 -1.824 26.522 1.00 39.94 ? 4 DT X "C4'" 1
ATOM 66 O "O4'" . DT A 1 4 ? 8.448 -0.801 27.518 1.00 46.09 ? 4 DT X "O4'" 1
ATOM 67 C "C3'" . DT A 1 4 ? 6.846 -2.115 26.497 1.00 39.13 ? 4 DT X "C3'" 1
ATOM 68 O "O3'" . DT A 1 4 ? 6.593 -3.213 27.282 1.00 30.05 ? 4 DT X "O3'" 1
ATOM 69 C "C2'" . DT A 1 4 ? 6.152 -0.846 27.012 1.00 37.53 ? 4 DT X "C2'" 1
ATOM 70 C "C1'" . DT A 1 4 ? 7.185 -0.384 28.012 1.00 41.19 ? 4 DT X "C1'" 1
ATOM 71 N N1 . DT A 1 4 ? 7.239 1.088 28.274 1.00 40.86 ? 4 DT X N1 1
ATOM 72 C C2 . DT A 1 4 ? 7.100 1.528 29.600 1.00 36.65 ? 4 DT X C2 1
ATOM 73 O O2 . DT A 1 4 ? 6.905 0.782 30.563 1.00 29.82 ? 4 DT X O2 1
ATOM 74 N N3 . DT A 1 4 ? 7.183 2.898 29.754 1.00 33.94 ? 4 DT X N3 1
ATOM 75 C C4 . DT A 1 4 ? 7.403 3.814 28.735 1.00 38.67 ? 4 DT X C4 1
ATOM 76 O O4 . DT A 1 4 ? 7.451 4.995 28.984 1.00 45.15 ? 4 DT X O4 1
ATOM 77 C C5 . DT A 1 4 ? 7.584 3.296 27.378 1.00 42.44 ? 4 DT X C5 1
ATOM 78 C C7 . DT A 1 4 ? 7.836 4.220 26.193 1.00 39.82 ? 4 DT X C7 1
ATOM 79 C C6 . DT A 1 4 ? 7.504 1.955 27.227 1.00 41.00 ? 4 DT X C6 1
ATOM 80 P P . DG A 1 5 ? 5.533 -4.224 26.720 1.00 37.15 ? 5 DG X P 1
ATOM 81 O OP1 . DG A 1 5 ? 5.793 -5.572 27.312 1.00 43.06 ? 5 DG X OP1 1
ATOM 82 O OP2 . DG A 1 5 ? 5.520 -4.118 25.235 1.00 44.41 ? 5 DG X OP2 1
ATOM 83 O "O5'" . DG A 1 5 ? 4.130 -3.660 27.250 1.00 39.60 ? 5 DG X "O5'" 1
ATOM 84 C "C5'" . DG A 1 5 ? 3.677 -3.907 28.624 1.00 43.33 ? 5 DG X "C5'" 1
ATOM 85 C "C4'" . DG A 1 5 ? 2.545 -2.987 29.014 1.00 43.17 ? 5 DG X "C4'" 1
ATOM 86 O "O4'" . DG A 1 5 ? 2.989 -1.601 29.036 1.00 38.91 ? 5 DG X "O4'" 1
ATOM 87 C "C3'" . DG A 1 5 ? 1.423 -3.036 27.978 1.00 45.26 ? 5 DG X "C3'" 1
ATOM 88 O "O3'" . DG A 1 5 ? 0.563 -4.222 28.158 1.00 43.08 ? 5 DG X "O3'" 1
ATOM 89 C "C2'" . DG A 1 5 ? 0.756 -1.649 28.083 1.00 41.84 ? 5 DG X "C2'" 1
ATOM 90 C "C1'" . DG A 1 5 ? 1.865 -0.806 28.717 1.00 40.93 ? 5 DG X "C1'" 1
ATOM 91 N N9 . DG A 1 5 ? 2.397 0.224 27.876 1.00 39.96 ? 5 DG X N9 1
ATOM 92 C C8 . DG A 1 5 ? 2.453 0.236 26.520 1.00 39.16 ? 5 DG X C8 1
ATOM 93 N N7 . DG A 1 5 ? 2.999 1.330 26.076 1.00 42.91 ? 5 DG X N7 1
ATOM 94 C C5 . DG A 1 5 ? 3.323 2.058 27.198 1.00 35.13 ? 5 DG X C5 1
ATOM 95 C C6 . DG A 1 5 ? 3.959 3.305 27.285 1.00 38.71 ? 5 DG X C6 1
ATOM 96 O O6 . DG A 1 5 ? 4.335 3.983 26.298 1.00 40.91 ? 5 DG X O6 1
ATOM 97 N N1 . DG A 1 5 ? 4.148 3.696 28.638 1.00 39.38 ? 5 DG X N1 1
ATOM 98 C C2 . DG A 1 5 ? 3.717 2.939 29.728 1.00 35.28 ? 5 DG X C2 1
ATOM 99 N N2 . DG A 1 5 ? 3.916 3.424 30.969 1.00 27.07 ? 5 DG X N2 1
ATOM 100 N N3 . DG A 1 5 ? 3.124 1.750 29.628 1.00 34.62 ? 5 DG X N3 1
ATOM 101 C C4 . DG A 1 5 ? 2.973 1.387 28.327 1.00 37.81 ? 5 DG X C4 1
ATOM 102 P P . DC A 1 6 ? -0.018 -4.860 26.815 1.00 39.07 ? 6 DC X P 1
ATOM 103 O OP1 . DC A 1 6 ? -0.339 -3.671 25.985 1.00 44.82 ? 6 DC X OP1 1
ATOM 104 O OP2 . DC A 1 6 ? -0.973 -5.956 27.032 1.00 38.21 ? 6 DC X OP2 1
ATOM 105 O "O5'" . DC A 1 6 ? 1.252 -5.368 26.011 1.00 45.96 ? 6 DC X "O5'" 1
ATOM 106 C "C5'" . DC A 1 6 ? 2.033 -6.449 26.405 1.00 53.54 ? 6 DC X "C5'" 1
ATOM 107 C "C4'" . DC A 1 6 ? 1.708 -7.712 25.605 1.00 53.59 ? 6 DC X "C4'" 1
ATOM 108 O "O4'" . DC A 1 6 ? 1.920 -7.418 24.207 1.00 53.89 ? 6 DC X "O4'" 1
ATOM 109 C "C3'" . DC A 1 6 ? 2.662 -8.830 26.048 1.00 54.70 ? 6 DC X "C3'" 1
ATOM 110 O "O3'" . DC A 1 6 ? 2.046 -9.972 26.822 1.00 51.23 ? 6 DC X "O3'" 1
ATOM 111 C "C2'" . DC A 1 6 ? 3.492 -9.092 24.782 1.00 53.32 ? 6 DC X "C2'" 1
ATOM 112 C "C1'" . DC A 1 6 ? 2.731 -8.437 23.641 1.00 52.52 ? 6 DC X "C1'" 1
ATOM 113 N N1 . DC A 1 6 ? 3.631 -7.915 22.475 1.00 44.96 ? 6 DC X N1 1
ATOM 114 C C2 . DC A 1 6 ? 3.427 -8.376 21.193 1.00 37.17 ? 6 DC X C2 1
ATOM 115 O O2 . DC A 1 6 ? 2.535 -9.193 21.074 1.00 39.81 ? 6 DC X O2 1
ATOM 116 N N3 . DC A 1 6 ? 4.199 -7.943 20.166 1.00 39.63 ? 6 DC X N3 1
ATOM 117 C C4 . DC A 1 6 ? 5.183 -7.039 20.379 1.00 43.34 ? 6 DC X C4 1
ATOM 118 N N4 . DC A 1 6 ? 5.961 -6.574 19.374 1.00 33.20 ? 6 DC X N4 1
ATOM 119 C C5 . DC A 1 6 ? 5.418 -6.542 21.698 1.00 44.42 ? 6 DC X C5 1
ATOM 120 C C6 . DC A 1 6 ? 4.632 -7.014 22.694 1.00 47.12 ? 6 DC X C6 1
ATOM 121 P P . DT A 1 7 ? 1.218 -11.282 26.369 0.50 46.80 ? 7 DT X P 1
ATOM 122 O OP1 . DT A 1 7 ? -0.181 -11.008 25.956 0.50 40.70 ? 7 DT X OP1 1
ATOM 123 O OP2 . DT A 1 7 ? 1.510 -12.059 27.589 0.50 43.56 ? 7 DT X OP2 1
ATOM 124 O "O5'" . DT A 1 7 ? 1.927 -12.026 25.139 0.50 50.07 ? 7 DT X "O5'" 1
ATOM 125 C "C5'" . DT A 1 7 ? 1.501 -11.749 23.779 0.50 53.63 ? 7 DT X "C5'" 1
ATOM 126 C "C4'" . DT A 1 7 ? 0.985 -12.957 23.010 0.50 53.70 ? 7 DT X "C4'" 1
ATOM 127 O "O4'" . DT A 1 7 ? 1.518 -12.862 21.671 0.50 54.15 ? 7 DT X "O4'" 1
ATOM 128 C "C3'" . DT A 1 7 ? 1.433 -14.348 23.460 0.50 54.28 ? 7 DT X "C3'" 1
ATOM 129 O "O3'" . DT A 1 7 ? 0.661 -15.407 22.870 0.50 52.46 ? 7 DT X "O3'" 1
ATOM 130 C "C2'" . DT A 1 7 ? 2.865 -14.351 22.945 0.50 54.62 ? 7 DT X "C2'" 1
ATOM 131 C "C1'" . DT A 1 7 ? 2.737 -13.595 21.616 0.50 53.18 ? 7 DT X "C1'" 1
ATOM 132 N N1 . DT A 1 7 ? 3.852 -12.624 21.276 0.50 48.65 ? 7 DT X N1 1
ATOM 133 C C2 . DT A 1 7 ? 4.099 -12.324 19.931 0.50 47.31 ? 7 DT X C2 1
ATOM 134 O O2 . DT A 1 7 ? 3.479 -12.789 18.980 0.50 46.84 ? 7 DT X O2 1
ATOM 135 N N3 . DT A 1 7 ? 5.132 -11.439 19.726 0.50 44.60 ? 7 DT X N3 1
ATOM 136 C C4 . DT A 1 7 ? 5.911 -10.838 20.684 0.50 40.24 ? 7 DT X C4 1
ATOM 137 O O4 . DT A 1 7 ? 6.786 -10.051 20.397 0.50 35.87 ? 7 DT X O4 1
ATOM 138 C C5 . DT A 1 7 ? 5.610 -11.188 22.046 0.50 42.64 ? 7 DT X C5 1
ATOM 139 C C7 . DT A 1 7 ? 6.396 -10.578 23.172 0.50 43.26 ? 7 DT X C7 1
ATOM 140 C C6 . DT A 1 7 ? 4.613 -12.049 22.282 0.50 43.90 ? 7 DT X C6 1
HETATM 141 CO CO . CO B 2 . ? 2.876 2.025 6.844 1.00 45.65 ? 101 CO X CO 1
HETATM 142 O O . HOH C 3 . ? 3.024 1.737 15.291 0.50 11.99 ? 102 HOH X O 1
#