HEADER DNA 17-MAY-99 1QDA
TITLE CRYSTAL STRUCTURE OF EPIDOXORUBICIN-FORMALDEHYDE VIRTUAL CROSSLINK OF
TITLE 2 DNA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 5' -D(CP*GP*CP*(G49)P*CP*GP)-3';
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 OTHER_DETAILS: DOXORUBICIN COVALENTLY ATTACHED TO N2(G4) VIA
COMPND 6 METHYLENE BRIDGE
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES
KEYWDS DOUBLE HELIX, DRUG-DNA COMPLEX, DNA
EXPDTA X-RAY DIFFRACTION
AUTHOR E.R.PODELL,D.J.HARRINGTON,D.J.TAATJES,T.H.KOCH
REVDAT 6 14-FEB-24 1QDA 1 REMARK LINK
REVDAT 5 04-APR-18 1QDA 1 REMARK
REVDAT 4 04-OCT-17 1QDA 1 REMARK
REVDAT 3 12-MAR-14 1QDA 1 JRNL VERSN
REVDAT 2 24-FEB-09 1QDA 1 VERSN
REVDAT 1 15-SEP-99 1QDA 0
JRNL AUTH E.R.PODELL,D.J.HARRINGTON,D.J.TAATJES,T.H.KOCH
JRNL TITL CRYSTAL STRUCTURE OF EPIDOXORUBICIN-FORMALDEHYDE VIRTUAL
JRNL TITL 2 CROSSLINK OF DNA AND EVIDENCE FOR ITS FORMATION IN HUMAN
JRNL TITL 3 BREAST-CANCER CELLS.
JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 55 1516 1999
JRNL REFN ISSN 0907-4449
JRNL PMID 10489446
JRNL DOI 10.1107/S0907444999008161
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH D.J.TAATJES,D.J.FENICK,G.GAUDIANO,T.H.KOCH
REMARK 1 TITL A REDOX PATHWAY LEADING TO THE ALKYLATION OF NUCLEIC ACIDS
REMARK 1 TITL 2 BY DOXORUBICIN AND RELATED ANTHRACYCLINES: APPLICATION TO
REMARK 1 TITL 3 THE DESIGN OF ANTITUMOR DRUGS FOR RESISTANT CANCER.
REMARK 1 REF CURR.PHARM.DES. V. 4 203 1998
REMARK 1 REFN ISSN 1381-6128
REMARK 1 PMID 10197040
REMARK 1 REFERENCE 2
REMARK 1 AUTH D.J.TAATJES,D.J.FENICK,T.H.KOCH
REMARK 1 TITL EPIDOXOFORM: A HYDROLYTICALLY MORE STABLE
REMARK 1 TITL 2 ANTHRACYCLINE-FORMALDEHYDE CONJUGATE TOXIC TO RESISTANT
REMARK 1 TITL 3 TUMOR CELLS
REMARK 1 REF J.MED.CHEM. V. 41 2452 1998
REMARK 1 REFN ISSN 0022-2623
REMARK 1 DOI 10.1021/JM970739S
REMARK 2
REMARK 2 RESOLUTION. 1.60 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-
REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,
REMARK 3 : READ,RICE,SIMONSON,WARREN
REMARK 3
REMARK 3 REFINEMENT TARGET : G. PARKINSON, J. VOJTECHOVSKY, L. CLOWNEY,
REMARK 3 A.T. BRUNGER, H.M. BERMAN
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL
REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.5
REMARK 3 NUMBER OF REFLECTIONS : 2612
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING SET) : 0.205
REMARK 3 FREE R VALUE : 0.268
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 17.300
REMARK 3 FREE R VALUE TEST SET COUNT : 529
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL
REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : NULL
REMARK 3 BIN FREE R VALUE : NULL
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 0
REMARK 3 NUCLEIC ACID ATOMS : 121
REMARK 3 HETEROGEN ATOMS : 39
REMARK 3 SOLVENT ATOMS : 30
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 17.80
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM SIGMAA (A) : NULL
REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM C-V SIGMAA (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.020
REMARK 3 BOND ANGLES (DEGREES) : 2.100
REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL
REMARK 3 IMPROPER ANGLES (DEGREES) : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELING.
REMARK 3 METHOD USED : NULL
REMARK 3 KSOL : NULL
REMARK 3 BSOL : NULL
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : NULL
REMARK 3 TOPOLOGY FILE 1 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: USED ALL THE REFLECTIONS IN THE FINAL
REMARK 3 SERIES OF REFINEMENT CYCLES
REMARK 4
REMARK 4 1QDA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB.
REMARK 100 THE DEPOSITION ID IS D_1000009101.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 23-JAN-98
REMARK 200 TEMPERATURE (KELVIN) : 298.0
REMARK 200 PH : 6.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3101
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0
REMARK 200 DATA REDUNDANCY : 12.00
REMARK 200 R MERGE (I) : 0.09900
REMARK 200 R SYM (I) : NULL
REMARK 200 FOR THE DATA SET : 6.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66
REMARK 200 COMPLETENESS FOR SHELL (%) : 82.7
REMARK 200 DATA REDUNDANCY IN SHELL : 9.50
REMARK 200 R MERGE FOR SHELL (I) : 0.30900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: CNS
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.82
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, FORMALDEHYDE, CACODYLATE,
REMARK 280 SPERMINE, BARIUM CHLORIDE, PH 6.0, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 296K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.27000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 14.05500
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 14.05500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.13500
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 14.05500
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 14.05500
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.40500
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 14.05500
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 14.05500
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.13500
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 14.05500
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 14.05500
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.40500
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.27000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 28.11000
REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 28.11000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.27000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 105 O HOH A 121 1.97
REMARK 500 OP1 DG A 6 O HOH A 123 2.08
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 DC A 5 N1 DC A 5 C2 -0.064
REMARK 500 DG A 6 O3' DG A 6 C3' -0.042
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 DC A 5 0.07 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DM6 A 100
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1D33 RELATED DB: PDB
REMARK 900 1D33 CONTAINS THE SAME DNA COMPLEXED WITH DAUNOMYCIN
REMARK 900 RELATED ID: 1D15 RELATED DB: PDB
REMARK 900 1D15 CONTAINS THE SAME DRUG COMPLEXED WITH D(CGATCG)
REMARK 900 RELATED ID: 1D54 RELATED DB: PDB
REMARK 900 1D54 CONTAINS THE SAME DRUG COMPLEXED WITH D(TGTACA)
DBREF 1QDA A 1 6 PDB 1QDA 1QDA 1 6
SEQRES 1 A 6 DC DG DC G49 DC DG
MODRES 1QDA G49 A 4 DG
HET G49 A 4 23
HET DM6 A 100 39
HETNAM G49 N2-METHYL-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
HETNAM DM6 4'-EPIDOXORUBICIN
HETSYN DM6 4'-EPIADRIAMYCIN
FORMUL 1 G49 C11 H16 N5 O7 P
FORMUL 2 DM6 C27 H30 N O11 1+
FORMUL 3 HOH *30(H2 O)
LINK O3' DC A 3 P G49 A 4 1555 1555 1.58
LINK O3' G49 A 4 P DC A 5 1555 1555 1.61
LINK CM2 G49 A 4 N3' DM6 A 100 1555 1555 1.52
SITE 1 AC1 10 DC A 1 DG A 2 DC A 3 G49 A 4
SITE 2 AC1 10 DC A 5 DG A 6 HOH A 101 HOH A 106
SITE 3 AC1 10 HOH A 124 HOH A 125
CRYST1 28.110 28.110 52.540 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.035575 0.000000 0.000000 0.00000
SCALE2 0.000000 0.035575 0.000000 0.00000
SCALE3 0.000000 0.000000 0.019033 0.00000
ATOM 1 O5' DC A 1 9.207 19.870 22.526 1.00 22.29 O
ATOM 2 C5' DC A 1 9.604 20.909 23.407 1.00 20.43 C
ATOM 3 C4' DC A 1 11.062 20.809 23.764 1.00 19.79 C
ATOM 4 O4' DC A 1 11.271 19.648 24.606 1.00 19.14 O
ATOM 5 C3' DC A 1 12.012 20.645 22.565 1.00 20.43 C
ATOM 6 O3' DC A 1 13.149 21.392 22.896 1.00 22.49 O
ATOM 7 C2' DC A 1 12.400 19.176 22.572 1.00 18.13 C
ATOM 8 C1' DC A 1 12.265 18.799 24.037 1.00 17.02 C
ATOM 9 N1 DC A 1 11.789 17.424 24.193 1.00 15.20 N
ATOM 10 C2 DC A 1 12.769 16.424 24.390 1.00 14.62 C
ATOM 11 O2 DC A 1 13.967 16.781 24.515 1.00 14.10 O
ATOM 12 N3 DC A 1 12.355 15.122 24.437 1.00 14.64 N
ATOM 13 C4 DC A 1 11.038 14.813 24.348 1.00 12.75 C
ATOM 14 N4 DC A 1 10.674 13.516 24.403 1.00 12.44 N
ATOM 15 C5 DC A 1 10.032 15.837 24.189 1.00 12.93 C
ATOM 16 C6 DC A 1 10.458 17.095 24.121 1.00 11.54 C
ATOM 17 P DG A 2 13.620 22.567 21.941 1.00 22.52 P
ATOM 18 OP1 DG A 2 14.586 23.236 22.810 1.00 25.96 O
ATOM 19 OP2 DG A 2 12.505 23.309 21.405 1.00 24.07 O
ATOM 20 O5' DG A 2 14.358 21.737 20.795 1.00 22.11 O
ATOM 21 C5' DG A 2 15.575 21.074 21.089 1.00 18.24 C
ATOM 22 C4' DG A 2 15.997 20.254 19.903 1.00 16.95 C
ATOM 23 O4' DG A 2 15.177 19.087 19.801 1.00 14.51 O
ATOM 24 C3' DG A 2 15.870 21.000 18.566 1.00 18.84 C
ATOM 25 O3' DG A 2 16.935 20.567 17.708 1.00 23.93 O
ATOM 26 C2' DG A 2 14.613 20.435 17.963 1.00 18.14 C
ATOM 27 C1' DG A 2 14.787 18.984 18.428 1.00 16.68 C
ATOM 28 N9 DG A 2 13.619 18.109 18.296 1.00 16.34 N
ATOM 29 C8 DG A 2 12.268 18.451 18.241 1.00 15.78 C
ATOM 30 N7 DG A 2 11.481 17.427 18.064 1.00 15.57 N
ATOM 31 C5 DG A 2 12.361 16.337 18.003 1.00 15.30 C
ATOM 32 C6 DG A 2 12.095 14.950 17.845 1.00 14.44 C
ATOM 33 O6 DG A 2 11.028 14.383 17.714 1.00 15.91 O
ATOM 34 N1 DG A 2 13.246 14.216 17.881 1.00 14.23 N
ATOM 35 C2 DG A 2 14.521 14.739 18.105 1.00 13.23 C
ATOM 36 N2 DG A 2 15.487 13.822 18.247 1.00 11.57 N
ATOM 37 N3 DG A 2 14.789 16.020 18.225 1.00 10.96 N
ATOM 38 C4 DG A 2 13.678 16.749 18.169 1.00 14.60 C
ATOM 39 P DC A 3 17.785 21.638 16.854 1.00 26.92 P
ATOM 40 OP1 DC A 3 18.421 22.573 17.784 1.00 25.63 O
ATOM 41 OP2 DC A 3 16.906 22.116 15.726 1.00 27.24 O
ATOM 42 O5' DC A 3 18.929 20.728 16.221 1.00 25.20 O
ATOM 43 C5' DC A 3 19.832 20.128 17.060 1.00 19.55 C
ATOM 44 C4' DC A 3 19.990 18.691 16.659 1.00 17.58 C
ATOM 45 O4' DC A 3 18.746 18.030 16.920 1.00 16.81 O
ATOM 46 C3' DC A 3 20.284 18.400 15.193 1.00 16.96 C
ATOM 47 O3' DC A 3 21.661 18.149 15.046 1.00 17.06 O
ATOM 48 C2' DC A 3 19.596 17.068 14.970 1.00 16.42 C
ATOM 49 C1' DC A 3 18.713 16.857 16.173 1.00 15.73 C
ATOM 50 N1 DC A 3 17.363 16.750 15.667 1.00 14.43 N
ATOM 51 C2 DC A 3 16.905 15.496 15.410 1.00 13.94 C
ATOM 52 O2 DC A 3 17.710 14.511 15.557 1.00 13.64 O
ATOM 53 N3 DC A 3 15.631 15.343 15.017 1.00 13.70 N
ATOM 54 C4 DC A 3 14.842 16.402 14.849 1.00 14.35 C
ATOM 55 N4 DC A 3 13.540 16.161 14.580 1.00 13.94 N
ATOM 56 C5 DC A 3 15.344 17.755 15.000 1.00 13.76 C
ATOM 57 C6 DC A 3 16.588 17.855 15.446 1.00 13.76 C
HETATM 58 P G49 A 4 22.342 18.310 13.635 1.00 17.29 P
HETATM 59 O1P G49 A 4 23.737 18.637 13.970 1.00 19.57 O
HETATM 60 O2P G49 A 4 21.554 19.108 12.706 1.00 17.87 O
HETATM 61 O5' G49 A 4 22.216 16.879 12.976 1.00 16.84 O
HETATM 62 C5' G49 A 4 22.783 15.757 13.596 1.00 15.26 C
HETATM 63 C4' G49 A 4 22.495 14.516 12.777 1.00 15.84 C
HETATM 64 O4' G49 A 4 21.072 14.236 12.768 1.00 15.87 O
HETATM 65 C3' G49 A 4 22.901 14.594 11.303 1.00 15.20 C
HETATM 66 O3' G49 A 4 23.417 13.287 10.942 1.00 17.60 O
HETATM 67 C2' G49 A 4 21.618 15.015 10.593 1.00 13.23 C
HETATM 68 C1' G49 A 4 20.565 14.329 11.437 1.00 14.10 C
HETATM 69 N9 G49 A 4 19.299 15.019 11.557 1.00 13.35 N
HETATM 70 C8 G49 A 4 19.039 16.359 11.675 1.00 13.16 C
HETATM 71 N7 G49 A 4 17.760 16.625 11.753 1.00 12.77 N
HETATM 72 C5 G49 A 4 17.164 15.366 11.690 1.00 13.03 C
HETATM 73 C6 G49 A 4 15.809 14.980 11.644 1.00 12.38 C
HETATM 74 O6 G49 A 4 14.812 15.698 11.655 1.00 11.72 O
HETATM 75 N1 G49 A 4 15.673 13.576 11.537 1.00 12.49 N
HETATM 76 C2 G49 A 4 16.679 12.669 11.448 1.00 12.84 C
HETATM 77 N2 G49 A 4 16.293 11.367 11.338 1.00 14.60 N
HETATM 78 CM2 G49 A 4 17.342 10.385 11.075 1.00 15.04 C
HETATM 79 N3 G49 A 4 17.942 13.008 11.470 1.00 13.68 N
HETATM 80 C4 G49 A 4 18.112 14.374 11.594 1.00 13.46 C
ATOM 81 P DC A 5 24.134 13.069 9.518 1.00 18.68 P
ATOM 82 OP1 DC A 5 24.998 11.877 9.598 1.00 20.78 O
ATOM 83 OP2 DC A 5 24.647 14.373 8.994 1.00 18.75 O
ATOM 84 O5' DC A 5 22.929 12.707 8.537 1.00 18.44 O
ATOM 85 C5' DC A 5 22.217 11.520 8.736 1.00 18.22 C
ATOM 86 C4' DC A 5 21.008 11.514 7.847 1.00 16.33 C
ATOM 87 O4' DC A 5 20.029 12.405 8.405 1.00 14.17 O
ATOM 88 C3' DC A 5 21.334 12.036 6.444 1.00 16.87 C
ATOM 89 O3' DC A 5 20.669 11.226 5.476 1.00 18.12 O
ATOM 90 C2' DC A 5 20.662 13.381 6.425 1.00 15.63 C
ATOM 91 C1' DC A 5 19.488 13.075 7.309 1.00 13.94 C
ATOM 92 N1 DC A 5 18.818 14.247 7.793 1.00 13.49 N
ATOM 93 C2 DC A 5 17.525 14.123 8.094 1.00 13.17 C
ATOM 94 O2 DC A 5 17.014 12.993 8.025 1.00 12.36 O
ATOM 95 N3 DC A 5 16.820 15.210 8.458 1.00 14.28 N
ATOM 96 C4 DC A 5 17.414 16.399 8.509 1.00 14.64 C
ATOM 97 N4 DC A 5 16.630 17.498 8.723 1.00 15.37 N
ATOM 98 C5 DC A 5 18.800 16.535 8.280 1.00 15.15 C
ATOM 99 C6 DC A 5 19.459 15.448 7.911 1.00 13.67 C
ATOM 100 P DG A 6 21.494 10.133 4.640 1.00 18.64 P
ATOM 101 OP1 DG A 6 22.078 9.099 5.531 1.00 18.80 O
ATOM 102 OP2 DG A 6 22.368 10.935 3.804 1.00 18.87 O
ATOM 103 O5' DG A 6 20.326 9.458 3.826 1.00 17.71 O
ATOM 104 C5' DG A 6 19.395 8.596 4.470 1.00 17.75 C
ATOM 105 C4' DG A 6 18.411 8.050 3.454 1.00 17.49 C
ATOM 106 O4' DG A 6 17.495 9.092 3.022 1.00 16.33 O
ATOM 107 C3' DG A 6 19.062 7.526 2.168 1.00 16.97 C
ATOM 108 O3' DG A 6 18.217 6.556 1.677 1.00 17.80 O
ATOM 109 C2' DG A 6 19.008 8.715 1.227 1.00 15.50 C
ATOM 110 C1' DG A 6 17.754 9.435 1.676 1.00 15.04 C
ATOM 111 N9 DG A 6 17.860 10.879 1.648 1.00 14.26 N
ATOM 112 C8 DG A 6 18.970 11.698 1.709 1.00 14.37 C
ATOM 113 N7 DG A 6 18.680 12.958 1.629 1.00 14.88 N
ATOM 114 C5 DG A 6 17.279 12.961 1.546 1.00 14.70 C
ATOM 115 C6 DG A 6 16.349 14.033 1.524 1.00 13.68 C
ATOM 116 O6 DG A 6 16.589 15.259 1.573 1.00 14.46 O
ATOM 117 N1 DG A 6 15.027 13.566 1.465 1.00 13.60 N
ATOM 118 C2 DG A 6 14.629 12.254 1.430 1.00 13.53 C
ATOM 119 N2 DG A 6 13.336 12.041 1.368 1.00 13.71 N
ATOM 120 N3 DG A 6 15.466 11.248 1.477 1.00 13.98 N
ATOM 121 C4 DG A 6 16.779 11.680 1.542 1.00 14.73 C
TER 122 DG A 6
HETATM 123 C1 DM6 A 100 15.768 18.679 5.125 1.00 16.61 C
HETATM 124 C2 DM6 A 100 17.034 19.342 5.145 1.00 17.69 C
HETATM 125 C3 DM6 A 100 18.206 18.732 5.073 1.00 17.14 C
HETATM 126 C4 DM6 A 100 18.274 17.326 4.970 1.00 15.98 C
HETATM 127 C5 DM6 A 100 16.994 15.059 4.873 1.00 14.15 C
HETATM 128 C6 DM6 A 100 15.723 13.014 4.852 1.00 13.56 C
HETATM 129 C7 DM6 A 100 14.485 10.810 4.861 1.00 14.53 C
HETATM 130 C8 DM6 A 100 13.140 10.136 4.548 1.00 14.33 C
HETATM 131 C9 DM6 A 100 11.942 10.790 5.332 1.00 16.18 C
HETATM 132 C10 DM6 A 100 11.825 12.291 4.920 1.00 14.85 C
HETATM 133 C11 DM6 A 100 13.194 14.439 4.943 1.00 13.30 C
HETATM 134 C12 DM6 A 100 14.465 16.583 5.025 1.00 14.86 C
HETATM 135 C13 DM6 A 100 10.637 9.998 4.945 1.00 18.26 C
HETATM 136 C14 DM6 A 100 9.993 9.209 6.132 1.00 20.01 C
HETATM 137 C15 DM6 A 100 15.800 17.272 5.034 1.00 15.23 C
HETATM 138 C16 DM6 A 100 17.013 16.567 4.959 1.00 15.73 C
HETATM 139 C17 DM6 A 100 15.722 14.422 4.892 1.00 13.47 C
HETATM 140 C18 DM6 A 100 14.465 15.141 4.952 1.00 13.50 C
HETATM 141 C19 DM6 A 100 13.192 13.004 4.915 1.00 14.42 C
HETATM 142 C20 DM6 A 100 14.411 12.304 4.879 1.00 13.69 C
HETATM 143 C21 DM6 A 100 20.724 17.259 4.915 1.00 17.74 C
HETATM 144 O4 DM6 A 100 19.386 16.622 4.890 1.00 18.64 O
HETATM 145 O5 DM6 A 100 17.997 14.405 4.790 1.00 15.68 O
HETATM 146 O6 DM6 A 100 16.867 12.239 4.787 1.00 13.27 O
HETATM 147 O7 DM6 A 100 15.069 10.538 6.213 1.00 14.74 O
HETATM 148 O9 DM6 A 100 12.150 10.758 6.721 1.00 15.07 O
HETATM 149 O11 DM6 A 100 11.977 15.039 4.959 1.00 14.76 O
HETATM 150 O12 DM6 A 100 13.380 17.205 5.095 1.00 16.24 O
HETATM 151 O13 DM6 A 100 10.234 10.338 3.860 1.00 20.18 O
HETATM 152 O14 DM6 A 100 8.807 8.523 5.616 1.00 21.82 O
HETATM 153 C1' DM6 A 100 16.065 9.511 6.206 1.00 14.67 C
HETATM 154 C2' DM6 A 100 17.088 9.853 7.240 1.00 15.10 C
HETATM 155 C3' DM6 A 100 16.468 9.793 8.658 1.00 15.44 C
HETATM 156 C4' DM6 A 100 15.854 8.434 8.886 1.00 15.67 C
HETATM 157 C5' DM6 A 100 14.791 8.202 7.818 1.00 15.07 C
HETATM 158 C6' DM6 A 100 14.100 6.824 7.922 1.00 16.84 C
HETATM 159 O4' DM6 A 100 15.280 8.358 10.190 1.00 17.73 O
HETATM 160 O5' DM6 A 100 15.393 8.265 6.496 1.00 15.30 O
HETATM 161 N3' DM6 A 100 17.585 10.119 9.602 1.00 15.54 N
HETATM 162 O HOH A 101 20.026 15.051 2.655 1.00 17.68 O
HETATM 163 O HOH A 102 13.632 18.347 11.758 1.00 32.26 O
HETATM 164 O HOH A 103 22.999 15.910 7.412 1.00 20.95 O
HETATM 165 O HOH A 104 17.036 18.975 12.004 1.00 21.58 O
HETATM 166 O HOH A 105 8.754 15.722 16.514 1.00 25.74 O
HETATM 167 O HOH A 106 9.420 12.047 1.676 1.00 23.41 O
HETATM 168 O HOH A 107 14.221 8.658 1.466 1.00 21.50 O
HETATM 169 O HOH A 108 14.275 6.674 3.971 1.00 29.76 O
HETATM 170 O HOH A 109 6.843 17.936 23.467 1.00 43.99 O
HETATM 171 O HOH A 110 20.970 18.775 10.036 1.00 32.44 O
HETATM 172 O HOH A 111 18.171 17.006 0.997 1.00 37.00 O
HETATM 173 O HOH A 112 21.163 16.445 0.937 1.00 44.93 O
HETATM 174 O HOH A 113 22.735 18.559 8.470 1.00 65.40 O
HETATM 175 O HOH A 114 12.544 20.901 4.246 1.00 34.50 O
HETATM 176 O HOH A 115 19.543 21.717 12.896 1.00 33.94 O
HETATM 177 O HOH A 116 11.503 21.785 19.210 1.00 31.92 O
HETATM 178 O HOH A 117 15.439 6.498 1.672 1.00 54.63 O
HETATM 179 O HOH A 118 26.774 15.805 9.730 1.00 51.48 O
HETATM 180 O HOH A 119 19.121 19.855 8.312 1.00 36.22 O
HETATM 181 O HOH A 120 21.570 13.318 -0.200 1.00 39.96 O
HETATM 182 O HOH A 121 8.455 17.336 17.600 1.00 40.73 O
HETATM 183 O HOH A 122 25.168 8.703 6.410 1.00 39.07 O
HETATM 184 O HOH A 123 21.758 7.817 7.136 1.00 44.67 O
HETATM 185 O HOH A 124 19.387 8.197 9.707 1.00 30.55 O
HETATM 186 O HOH A 125 11.494 18.977 6.404 1.00 43.47 O
HETATM 187 O HOH A 126 7.965 12.874 24.516 1.00 31.50 O
HETATM 188 O HOH A 127 11.634 9.537 0.700 1.00 30.44 O
HETATM 189 O HOH A 128 14.164 22.009 25.353 1.00 52.92 O
HETATM 190 O HOH A 129 9.610 7.801 1.944 1.00 41.43 O
HETATM 191 O HOH A 130 16.014 20.711 25.816 1.00 39.00 O
CONECT 47 58
CONECT 58 47 59 60 61
CONECT 59 58
CONECT 60 58
CONECT 61 58 62
CONECT 62 61 63
CONECT 63 62 64 65
CONECT 64 63 68
CONECT 65 63 66 67
CONECT 66 65 81
CONECT 67 65 68
CONECT 68 64 67 69
CONECT 69 68 70 80
CONECT 70 69 71
CONECT 71 70 72
CONECT 72 71 73 80
CONECT 73 72 74 75
CONECT 74 73
CONECT 75 73 76
CONECT 76 75 77 79
CONECT 77 76 78
CONECT 78 77 161
CONECT 79 76 80
CONECT 80 69 72 79
CONECT 81 66
CONECT 123 124 137
CONECT 124 123 125
CONECT 125 124 126
CONECT 126 125 138 144
CONECT 127 138 139 145
CONECT 128 139 142 146
CONECT 129 130 142 147
CONECT 130 129 131
CONECT 131 130 132 135 148
CONECT 132 131 141
CONECT 133 140 141 149
CONECT 134 137 140 150
CONECT 135 131 136 151
CONECT 136 135 152
CONECT 137 123 134 138
CONECT 138 126 127 137
CONECT 139 127 128 140
CONECT 140 133 134 139
CONECT 141 132 133 142
CONECT 142 128 129 141
CONECT 143 144
CONECT 144 126 143
CONECT 145 127
CONECT 146 128
CONECT 147 129 153
CONECT 148 131
CONECT 149 133
CONECT 150 134
CONECT 151 135
CONECT 152 136
CONECT 153 147 154 160
CONECT 154 153 155
CONECT 155 154 156 161
CONECT 156 155 157 159
CONECT 157 156 158 160
CONECT 158 157
CONECT 159 156
CONECT 160 153 157
CONECT 161 78 155
MASTER 326 0 2 0 0 0 3 6 190 1 64 1
END