data_1O55
#
_entry.id 1O55
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.383
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1O55 pdb_00001o55 10.2210/pdb1o55/pdb
NDB UD0038 ? ?
RCSB rcsb001815 ? ?
WWPDB D_1000001815 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2003-08-26
2 'Structure model' 1 1 2008-04-26
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-10-04
5 'Structure model' 1 4 2023-12-27
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Refinement description'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Database references'
6 5 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' software
2 5 'Structure model' chem_comp_atom
3 5 'Structure model' chem_comp_bond
4 5 'Structure model' database_2
5 5 'Structure model' pdbx_struct_conn_angle
6 5 'Structure model' struct_conn
7 5 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_software.name'
2 5 'Structure model' '_database_2.pdbx_DOI'
3 5 'Structure model' '_database_2.pdbx_database_accession'
4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'
5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'
8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
10 5 'Structure model' '_pdbx_struct_conn_angle.value'
11 5 'Structure model' '_struct_conn.pdbx_dist_value'
12 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
13 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
14 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
15 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'
16 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
17 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'
18 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
19 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
20 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
21 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
22 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'
23 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'
24 5 'Structure model' '_struct_site.pdbx_auth_asym_id'
25 5 'Structure model' '_struct_site.pdbx_auth_comp_id'
26 5 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_PDB_obs_spr.id SPRSDE
_pdbx_database_PDB_obs_spr.pdb_id 1O55
_pdbx_database_PDB_obs_spr.replace_pdb_id 415d
_pdbx_database_PDB_obs_spr.date 2003-08-26
_pdbx_database_PDB_obs_spr.details ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1O55
_pdbx_database_status.recvd_initial_deposition_date 2003-08-20
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Gao, Y.G.' 1
'Robinson, H.' 2
'Guan, Y.' 3
'Liaw, Y.C.' 4
'van Boom, J.H.' 5
'van der Marel, G.A.' 6
'Wang, A.H.' 7
#
_citation.id primary
_citation.title 'Molecular structure of two crystal forms of cyclic triadenylic acid at 1A resolution.'
_citation.journal_abbrev J.Biomol.Struct.Dyn.
_citation.journal_volume 16
_citation.page_first 69
_citation.page_last 76
_citation.year 1998
_citation.journal_id_ASTM JBSDD6
_citation.country US
_citation.journal_id_ISSN 0739-1102
_citation.journal_id_CSD 0646
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 9745896
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Gao, Y.G.' 1 ?
primary 'Robinson, H.' 2 ?
primary 'Guan, Y.' 3 ?
primary 'Liaw, Y.C.' 4 ?
primary 'van Boom, J.H.' 5 ?
primary 'van der Marel, G.A.' 6 ?
primary 'Wang, A.H.' 7 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-CD(*AP*AP*AP)-3')
;
894.663 2 ? ? ? ?
2 non-polymer syn 'COBALT (II) ION' 58.933 1 ? ? ? ?
3 water nat water 18.015 23 ? ? ? ?
#
_entity_keywords.entity_id 1
_entity_keywords.text 'CYCLIC TRINUCLEOTIDE'
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DA)(DA)(DA)'
_entity_poly.pdbx_seq_one_letter_code_can AAA
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'COBALT (II) ION' CO
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DA n
1 2 DA n
1 3 DA n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details Synthetic
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DA 1 2 2 DA A A . n
A 1 2 DA 2 3 ? ? ? A . n
A 1 3 DA 3 4 ? ? ? A . n
B 1 1 DA 1 5 5 DA A B . n
B 1 2 DA 2 6 ? ? ? B . n
B 1 3 DA 3 7 ? ? ? B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CO 1 8 7 CO OCO B .
D 3 HOH 1 103 103 HOH HOH A .
D 3 HOH 2 104 104 HOH HOH A .
D 3 HOH 3 108 108 HOH HOH A .
D 3 HOH 4 109 109 HOH HOH A .
D 3 HOH 5 112 112 HOH HOH A .
D 3 HOH 6 113 113 HOH HOH A .
D 3 HOH 7 114 114 HOH HOH A .
D 3 HOH 8 117 117 HOH HOH A .
D 3 HOH 9 121 7 HOH OCO A .
D 3 HOH 10 122 7 HOH OCO A .
E 3 HOH 1 101 101 HOH HOH B .
E 3 HOH 2 102 102 HOH HOH B .
E 3 HOH 3 105 105 HOH HOH B .
E 3 HOH 4 106 106 HOH HOH B .
E 3 HOH 5 107 107 HOH HOH B .
E 3 HOH 6 110 110 HOH HOH B .
E 3 HOH 7 111 111 HOH HOH B .
E 3 HOH 8 115 115 HOH HOH B .
E 3 HOH 9 116 116 HOH HOH B .
E 3 HOH 10 118 7 HOH OCO B .
E 3 HOH 11 119 7 HOH OCO B .
E 3 HOH 12 120 7 HOH OCO B .
E 3 HOH 13 123 7 HOH OCO B .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
bioteX 'data collection' . ? 1
bioteX 'data reduction' . ? 2
SHELXS phasing . ? 3
SHELXL-97 refinement . ? 4
bioteX 'data scaling' . ? 5
#
_cell.entry_id 1O55
_cell.length_a 22.637
_cell.length_b 22.637
_cell.length_c 44.581
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 36
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 1O55
_symmetry.space_group_name_H-M 'H 3 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting hexagonal
_symmetry.Int_Tables_number 155
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1O55
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.67
_exptl_crystal.density_percent_sol 26.0000
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 298.00
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 4.50
_exptl_crystal_grow.pdbx_details 'pH 4.50, VAPOR DIFFUSION, HANGING DROP, temperature 298.00K'
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 COCL3 ? ? ?
1 2 1 GLYCINE ? ? ?
1 3 1 MPD ? ? ?
1 4 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 123.00
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type RIGAKU
_diffrn_detector.pdbx_collection_date 1997-12-29
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU RU200'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1O55
_reflns.observed_criterion_sigma_I 0.000
_reflns.observed_criterion_sigma_F 0.000
_reflns.d_resolution_low 10.000
_reflns.d_resolution_high 1.040
_reflns.number_obs 2198
_reflns.number_all 2198
_reflns.percent_possible_obs 95.400
_reflns.pdbx_Rmerge_I_obs 0.044
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 3.500
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 1O55
_refine.ls_number_reflns_obs 2198
_refine.ls_number_reflns_all 2198
_refine.pdbx_ls_sigma_I 0.00
_refine.pdbx_ls_sigma_F 0.00
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 10.000
_refine.ls_d_res_high 1.040
_refine.ls_percent_reflns_obs 97.200
_refine.ls_R_factor_obs 0.138
_refine.ls_R_factor_all 0.144
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 42
_refine_hist.pdbx_number_atoms_ligand 7
_refine_hist.number_atoms_solvent 17
_refine_hist.number_atoms_total 66
_refine_hist.d_res_high 1.040
_refine_hist.d_res_low 10.000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
s_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ?
s_angle_d 0.031 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ?
s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ?
s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ?
s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ?
s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ?
s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_pdbx_refine.entry_id 1O55
_pdbx_refine.R_factor_all_no_cutoff ?
_pdbx_refine.R_factor_obs_no_cutoff ?
_pdbx_refine.free_R_factor_no_cutoff ?
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ?
_pdbx_refine.free_R_val_test_set_ct_no_cutoff ?
_pdbx_refine.R_factor_all_4sig_cutoff 0.138
_pdbx_refine.R_factor_obs_4sig_cutoff ?
_pdbx_refine.free_R_factor_4sig_cutoff ?
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ?
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ?
_pdbx_refine.number_reflns_obs_4sig_cutoff ?
_pdbx_refine.number_reflns_obs_no_cutoff ?
_pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine.free_R_error_no_cutoff ?
#
_database_PDB_matrix.entry_id 1O55
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1O55
_struct.title 'MOLECULAR STRUCTURE OF TWO CRYSTAL FORMS OF CYCLIC TRIADENYLIC ACID AT 1 ANGSTROM RESOLUTION'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1O55
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'CYCLIC TRINUCLEOTIDE, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1O55
_struct_ref.pdbx_db_accession 1O55
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1O55 A 1 ? 3 ? 1O55 2 ? 4 ? 2 4
2 1 1O55 B 1 ? 3 ? 1O55 5 ? 7 ? 5 7
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_defined_assembly ? trimeric 3
2 author_defined_assembly ? trimeric 3
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1,2,3 A,D
2 1,4,5 B,C,E
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -11.3185000000 -0.8660254038
-0.5000000000 0.0000000000 19.6042170655 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 11.3185000000 0.8660254038
-0.5000000000 0.0000000000 19.6042170655 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038
-0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038
-0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
#
loop_
_struct_biol.id
_struct_biol.pdbx_parent_biol_id
_struct_biol.details
1 ? ?
2 ? ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? D HOH . O ? ? ? 1_555 C CO . CO ? ? A HOH 121 B CO 8 1_555 ? ? ? ? ? ? ? 2.101 ? ?
metalc2 metalc ? ? D HOH . O ? ? ? 1_555 C CO . CO ? ? A HOH 122 B CO 8 1_555 ? ? ? ? ? ? ? 2.070 ? ?
metalc3 metalc ? ? C CO . CO ? ? ? 1_555 E HOH . O ? ? B CO 8 B HOH 118 1_555 ? ? ? ? ? ? ? 1.989 ? ?
metalc4 metalc ? ? C CO . CO ? ? ? 1_555 E HOH . O ? ? B CO 8 B HOH 119 1_555 ? ? ? ? ? ? ? 2.133 ? ?
metalc5 metalc ? ? C CO . CO ? ? ? 1_555 E HOH . O ? ? B CO 8 B HOH 120 1_555 ? ? ? ? ? ? ? 2.074 ? ?
metalc6 metalc ? ? C CO . CO ? ? ? 1_555 E HOH . O ? ? B CO 8 B HOH 123 1_555 ? ? ? ? ? ? ? 2.068 ? ?
#
_struct_conn_type.id metalc
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O ? D HOH . ? A HOH 121 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? D HOH . ? A HOH 122 ? 1_555 88.7 ?
2 O ? D HOH . ? A HOH 121 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 118 ? 1_555 87.2 ?
3 O ? D HOH . ? A HOH 122 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 118 ? 1_555 94.8 ?
4 O ? D HOH . ? A HOH 121 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 119 ? 1_555 90.9 ?
5 O ? D HOH . ? A HOH 122 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 119 ? 1_555 89.3 ?
6 O ? E HOH . ? B HOH 118 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 119 ? 1_555 175.4 ?
7 O ? D HOH . ? A HOH 121 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 120 ? 1_555 94.8 ?
8 O ? D HOH . ? A HOH 122 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 120 ? 1_555 175.3 ?
9 O ? E HOH . ? B HOH 118 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 120 ? 1_555 88.6 ?
10 O ? E HOH . ? B HOH 119 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 120 ? 1_555 87.5 ?
11 O ? D HOH . ? A HOH 121 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 123 ? 1_555 173.2 ?
12 O ? D HOH . ? A HOH 122 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 123 ? 1_555 84.8 ?
13 O ? E HOH . ? B HOH 118 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 123 ? 1_555 91.6 ?
14 O ? E HOH . ? B HOH 119 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 123 ? 1_555 90.7 ?
15 O ? E HOH . ? B HOH 120 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 123 ? 1_555 91.8 ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id B
_struct_site.pdbx_auth_comp_id CO
_struct_site.pdbx_auth_seq_id 8
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 6
_struct_site.details 'BINDING SITE FOR RESIDUE CO B 8'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 6 HOH D . ? HOH A 121 . ? 1_555 ?
2 AC1 6 HOH D . ? HOH A 122 . ? 1_555 ?
3 AC1 6 HOH E . ? HOH B 118 . ? 1_555 ?
4 AC1 6 HOH E . ? HOH B 119 . ? 1_555 ?
5 AC1 6 HOH E . ? HOH B 120 . ? 1_555 ?
6 AC1 6 HOH E . ? HOH B 123 . ? 1_555 ?
#
loop_
_pdbx_validate_symm_contact.id
_pdbx_validate_symm_contact.PDB_model_num
_pdbx_validate_symm_contact.auth_atom_id_1
_pdbx_validate_symm_contact.auth_asym_id_1
_pdbx_validate_symm_contact.auth_comp_id_1
_pdbx_validate_symm_contact.auth_seq_id_1
_pdbx_validate_symm_contact.PDB_ins_code_1
_pdbx_validate_symm_contact.label_alt_id_1
_pdbx_validate_symm_contact.site_symmetry_1
_pdbx_validate_symm_contact.auth_atom_id_2
_pdbx_validate_symm_contact.auth_asym_id_2
_pdbx_validate_symm_contact.auth_comp_id_2
_pdbx_validate_symm_contact.auth_seq_id_2
_pdbx_validate_symm_contact.PDB_ins_code_2
_pdbx_validate_symm_contact.label_alt_id_2
_pdbx_validate_symm_contact.site_symmetry_2
_pdbx_validate_symm_contact.dist
1 1 P A DA 2 ? ? 1_555 "O3'" A DA 2 ? ? 3_565 1.61
2 1 P B DA 5 ? ? 1_555 "O3'" B DA 5 ? ? 3_555 1.62
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 N7 A DA 2 ? ? C8 A DA 2 ? ? N9 A DA 2 ? ? 110.41 113.80 -3.39 0.50 N
2 1 C8 A DA 2 ? ? N9 A DA 2 ? ? C4 A DA 2 ? ? 109.25 105.80 3.45 0.40 N
3 1 N9 A DA 2 ? ? C4 A DA 2 ? ? C5 A DA 2 ? ? 103.31 105.80 -2.49 0.40 N
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 103 ? D HOH .
2 1 A HOH 117 ? D HOH .
3 1 B HOH 101 ? E HOH .
4 1 B HOH 105 ? E HOH .
5 1 B HOH 106 ? E HOH .
6 1 B HOH 107 ? E HOH .
7 1 B HOH 111 ? E HOH .
#
_pdbx_database_remark.id 999
_pdbx_database_remark.text
;SEQUENCE
The crystallized entity is 5'-CD(*AP*AP*AP)-3', however,
each of the two independent molecules sits on the
crystallographic 3-fold axis. Remark 350 provides the way
to create cyclic D(*Ap*Ap*Ap) molecule.
;
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A DA 3 ? A DA 2
2 1 Y 1 A DA 4 ? A DA 3
3 1 Y 1 B DA 6 ? B DA 2
4 1 Y 1 B DA 7 ? B DA 3
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
CO CO CO N N 1
DA OP3 O N N 2
DA P P N N 3
DA OP1 O N N 4
DA OP2 O N N 5
DA "O5'" O N N 6
DA "C5'" C N N 7
DA "C4'" C N R 8
DA "O4'" O N N 9
DA "C3'" C N S 10
DA "O3'" O N N 11
DA "C2'" C N N 12
DA "C1'" C N R 13
DA N9 N Y N 14
DA C8 C Y N 15
DA N7 N Y N 16
DA C5 C Y N 17
DA C6 C Y N 18
DA N6 N N N 19
DA N1 N Y N 20
DA C2 C Y N 21
DA N3 N Y N 22
DA C4 C Y N 23
DA HOP3 H N N 24
DA HOP2 H N N 25
DA "H5'" H N N 26
DA "H5''" H N N 27
DA "H4'" H N N 28
DA "H3'" H N N 29
DA "HO3'" H N N 30
DA "H2'" H N N 31
DA "H2''" H N N 32
DA "H1'" H N N 33
DA H8 H N N 34
DA H61 H N N 35
DA H62 H N N 36
DA H2 H N N 37
HOH O O N N 38
HOH H1 H N N 39
HOH H2 H N N 40
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
HOH O H1 sing N N 39
HOH O H2 sing N N 40
#
_atom_sites.entry_id 1O55
_atom_sites.fract_transf_matrix[1][1] 0.044175
_atom_sites.fract_transf_matrix[1][2] 0.025505
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.051009
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.022431
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
CO
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 P P . DA A 1 1 ? -2.673 15.931 2.686 1.00 8.71 ? 2 DA A P 1
ATOM 2 O OP1 . DA A 1 1 ? -3.818 16.500 3.449 1.00 10.67 ? 2 DA A OP1 1
ATOM 3 O OP2 . DA A 1 1 ? -2.651 16.207 1.202 1.00 10.10 ? 2 DA A OP2 1
ATOM 4 O "O5'" . DA A 1 1 ? -2.681 14.391 2.826 1.00 7.27 ? 2 DA A "O5'" 1
ATOM 5 C "C5'" . DA A 1 1 ? -2.535 13.860 4.152 1.00 8.93 ? 2 DA A "C5'" 1
ATOM 6 C "C4'" . DA A 1 1 ? -2.988 12.420 4.133 1.00 9.96 ? 2 DA A "C4'" 1
ATOM 7 O "O4'" . DA A 1 1 ? -4.433 12.456 4.078 1.00 10.18 ? 2 DA A "O4'" 1
ATOM 8 C "C3'" . DA A 1 1 ? -2.480 11.585 2.936 1.00 7.06 ? 2 DA A "C3'" 1
ATOM 9 O "O3'" . DA A 1 1 ? -2.259 10.226 3.409 1.00 9.04 ? 2 DA A "O3'" 1
ATOM 10 C "C2'" . DA A 1 1 ? -3.700 11.581 2.032 1.00 7.56 ? 2 DA A "C2'" 1
ATOM 11 C "C1'" . DA A 1 1 ? -4.836 11.568 3.013 1.00 9.44 ? 2 DA A "C1'" 1
ATOM 12 N N9 . DA A 1 1 ? -6.055 12.116 2.463 1.00 12.00 ? 2 DA A N9 1
ATOM 13 C C8 . DA A 1 1 ? -6.444 13.437 2.464 1.00 10.73 ? 2 DA A C8 1
ATOM 14 N N7 . DA A 1 1 ? -7.630 13.567 1.906 1.00 12.95 ? 2 DA A N7 1
ATOM 15 C C5 . DA A 1 1 ? -8.048 12.257 1.610 1.00 20.27 ? 2 DA A C5 1
ATOM 16 C C6 . DA A 1 1 ? -9.237 11.718 1.040 1.00 9.40 ? 2 DA A C6 1
ATOM 17 N N6 . DA A 1 1 ? -10.256 12.531 0.731 1.00 23.48 ? 2 DA A N6 1
ATOM 18 N N1 . DA A 1 1 ? -9.313 10.383 0.871 1.00 12.79 ? 2 DA A N1 1
ATOM 19 C C2 . DA A 1 1 ? -8.264 9.611 1.247 1.00 11.95 ? 2 DA A C2 1
ATOM 20 N N3 . DA A 1 1 ? -7.106 10.006 1.789 1.00 9.28 ? 2 DA A N3 1
ATOM 21 C C4 . DA A 1 1 ? -7.069 11.338 1.902 1.00 9.20 ? 2 DA A C4 1
ATOM 22 P P . DA B 1 1 ? -1.786 3.601 5.863 1.00 7.32 ? 5 DA B P 1
ATOM 23 O OP1 . DA B 1 1 ? -2.580 4.507 6.733 1.00 8.81 ? 5 DA B OP1 1
ATOM 24 O OP2 . DA B 1 1 ? -1.802 3.860 4.388 1.00 9.02 ? 5 DA B OP2 1
ATOM 25 O "O5'" . DA B 1 1 ? -2.198 2.076 6.022 1.00 7.33 ? 5 DA B "O5'" 1
ATOM 26 C "C5'" . DA B 1 1 ? -2.270 1.424 7.335 1.00 6.64 ? 5 DA B "C5'" 1
ATOM 27 C "C4'" . DA B 1 1 ? -3.116 0.182 7.225 1.00 7.03 ? 5 DA B "C4'" 1
ATOM 28 O "O4'" . DA B 1 1 ? -4.497 0.579 7.092 1.00 7.00 ? 5 DA B "O4'" 1
ATOM 29 C "C3'" . DA B 1 1 ? -2.812 -0.717 6.053 1.00 6.39 ? 5 DA B "C3'" 1
ATOM 30 O "O3'" . DA B 1 1 ? -2.965 -2.084 6.561 1.00 7.31 ? 5 DA B "O3'" 1
ATOM 31 C "C2'" . DA B 1 1 ? -3.888 -0.436 5.041 1.00 8.37 ? 5 DA B "C2'" 1
ATOM 32 C "C1'" . DA B 1 1 ? -5.034 0.030 5.895 1.00 7.66 ? 5 DA B "C1'" 1
ATOM 33 N N9 . DA B 1 1 ? -5.892 1.018 5.249 1.00 7.20 ? 5 DA B N9 1
ATOM 34 C C8 . DA B 1 1 ? -5.465 2.153 4.606 1.00 8.40 ? 5 DA B C8 1
ATOM 35 N N7 . DA B 1 1 ? -6.460 2.933 4.270 1.00 8.44 ? 5 DA B N7 1
ATOM 36 C C5 . DA B 1 1 ? -7.613 2.282 4.677 1.00 7.36 ? 5 DA B C5 1
ATOM 37 C C6 . DA B 1 1 ? -8.957 2.569 4.553 1.00 6.27 ? 5 DA B C6 1
ATOM 38 N N6 . DA B 1 1 ? -9.416 3.715 4.006 1.00 7.57 ? 5 DA B N6 1
ATOM 39 N N1 . DA B 1 1 ? -9.843 1.678 5.019 1.00 6.39 ? 5 DA B N1 1
ATOM 40 C C2 . DA B 1 1 ? -9.350 0.527 5.551 1.00 8.05 ? 5 DA B C2 1
ATOM 41 N N3 . DA B 1 1 ? -8.116 0.099 5.722 1.00 5.91 ? 5 DA B N3 1
ATOM 42 C C4 . DA B 1 1 ? -7.262 1.065 5.277 1.00 7.58 ? 5 DA B C4 1
HETATM 43 CO CO . CO C 2 . ? -5.050 6.966 4.083 1.00 15.61 ? 8 CO B CO 1
HETATM 44 O O . HOH D 3 . ? 0.000 13.069 0.654 0.33 13.17 ? 103 HOH A O 1
HETATM 45 O O . HOH D 3 . ? -1.831 14.584 -0.716 1.00 13.18 ? 104 HOH A O 1
HETATM 46 O O . HOH D 3 . ? -4.212 8.817 7.443 1.00 28.37 ? 108 HOH A O 1
HETATM 47 O O . HOH D 3 . ? -10.284 15.425 1.025 1.00 47.55 ? 109 HOH A O 1
HETATM 48 O O . HOH D 3 . ? -6.575 17.108 2.483 1.00 27.85 ? 112 HOH A O 1
HETATM 49 O O . HOH D 3 . ? -12.807 12.290 0.507 0.50 15.55 ? 113 HOH A O 1
HETATM 50 O O . HOH D 3 . ? -2.772 18.545 0.209 0.50 14.79 ? 114 HOH A O 1
HETATM 51 O O . HOH D 3 . ? -1.260 10.887 7.430 0.25 13.33 ? 117 HOH A O 1
HETATM 52 O O . HOH D 3 . ? -4.166 8.681 4.914 1.00 12.04 ? 121 HOH A O 1
HETATM 53 O O . HOH D 3 . ? -5.234 7.988 2.292 1.00 9.54 ? 122 HOH A O 1
HETATM 54 O O . HOH E 3 . ? -11.319 6.535 4.942 0.33 7.66 ? 101 HOH B O 1
HETATM 55 O O . HOH E 3 . ? -8.936 6.711 3.282 1.00 9.43 ? 102 HOH B O 1
HETATM 56 O O . HOH E 3 . ? -8.692 -1.985 7.430 0.25 6.90 ? 105 HOH B O 1
HETATM 57 O O . HOH E 3 . ? 0.000 0.000 3.726 0.33 13.05 ? 106 HOH B O 1
HETATM 58 O O . HOH E 3 . ? -2.865 4.962 0.000 0.50 19.28 ? 107 HOH B O 1
HETATM 59 O O . HOH E 3 . ? -6.735 -2.957 5.625 0.50 24.86 ? 110 HOH B O 1
HETATM 60 O O . HOH E 3 . ? -5.438 3.650 7.430 0.50 21.37 ? 111 HOH B O 1
HETATM 61 O O . HOH E 3 . ? -1.936 1.716 2.828 1.00 30.81 ? 115 HOH B O 1
HETATM 62 O O . HOH E 3 . ? -3.878 3.518 2.619 1.00 44.66 ? 116 HOH B O 1
HETATM 63 O O . HOH E 3 . ? -6.777 7.616 4.825 1.00 9.95 ? 118 HOH B O 1
HETATM 64 O O . HOH E 3 . ? -3.145 6.249 3.447 1.00 9.64 ? 119 HOH B O 1
HETATM 65 O O . HOH E 3 . ? -4.815 5.806 5.786 1.00 10.38 ? 120 HOH B O 1
HETATM 66 O O . HOH E 3 . ? -5.993 5.422 3.082 1.00 8.82 ? 123 HOH B O 1
#
loop_
_atom_site_anisotrop.id
_atom_site_anisotrop.type_symbol
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_alt_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_atom_site_anisotrop.pdbx_PDB_ins_code
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
1 P P . DA A 1 ? 0.1230 0.0972 0.1106 0.0175 0.0089 -0.0114 2 DA A P
2 O OP1 . DA A 1 ? 0.1106 0.1424 0.1525 0.0165 0.0513 -0.0460 2 DA A OP1
3 O OP2 . DA A 1 ? 0.1720 0.0999 0.1119 0.0277 0.0019 0.0054 2 DA A OP2
4 O "O5'" . DA A 1 ? 0.1100 0.0854 0.0807 -0.0121 0.0078 -0.0071 2 DA A "O5'"
5 C "C5'" . DA A 1 ? 0.1127 0.1159 0.1106 -0.0141 -0.0004 -0.0069 2 DA A "C5'"
6 C "C4'" . DA A 1 ? 0.1216 0.1566 0.1003 -0.0563 -0.0052 0.0034 2 DA A "C4'"
7 O "O4'" . DA A 1 ? 0.1370 0.1787 0.0711 -0.0394 0.0102 0.0188 2 DA A "O4'"
8 C "C3'" . DA A 1 ? 0.0995 0.1084 0.0603 0.0049 0.0113 0.0076 2 DA A "C3'"
9 O "O3'" . DA A 1 ? 0.1151 0.1195 0.1088 -0.0120 0.0042 0.0318 2 DA A "O3'"
10 C "C2'" . DA A 1 ? 0.1099 0.0871 0.0904 0.0010 0.0342 -0.0020 2 DA A "C2'"
11 C "C1'" . DA A 1 ? 0.0703 0.1509 0.1373 -0.0077 -0.0352 0.0230 2 DA A "C1'"
12 N N9 . DA A 1 ? 0.1840 0.1686 0.1032 0.0047 0.0434 0.0257 2 DA A N9
13 C C8 . DA A 1 ? 0.1540 0.1531 0.1007 0.0137 0.0024 0.0168 2 DA A C8
14 N N7 . DA A 1 ? 0.1612 0.2507 0.0801 0.0065 0.0408 0.0257 2 DA A N7
15 C C5 . DA A 1 ? 0.1650 0.5416 0.0634 0.0236 0.0404 0.1208 2 DA A C5
16 C C6 . DA A 1 ? 0.0748 0.1989 0.0836 0.0029 0.0166 0.0211 2 DA A C6
17 N N6 . DA A 1 ? 0.2473 0.5099 0.1349 0.2809 0.0740 0.1409 2 DA A N6
18 N N1 . DA A 1 ? 0.1056 0.2930 0.0873 -0.0187 -0.0215 0.0025 2 DA A N1
19 C C2 . DA A 1 ? 0.1613 0.1378 0.1549 -0.0197 -0.0778 0.0324 2 DA A C2
20 N N3 . DA A 1 ? 0.1410 0.1229 0.0888 -0.0035 0.0045 0.0276 2 DA A N3
21 C C4 . DA A 1 ? 0.1017 0.1349 0.1131 0.0619 0.0388 0.0651 2 DA A C4
22 P P . DA B 1 ? 0.0829 0.0767 0.1183 0.0023 0.0028 -0.0033 5 DA B P
23 O OP1 . DA B 1 ? 0.0855 0.0988 0.1503 0.0022 -0.0091 0.0016 5 DA B OP1
24 O OP2 . DA B 1 ? 0.1519 0.1013 0.0895 0.0092 0.0041 0.0239 5 DA B OP2
25 O "O5'" . DA B 1 ? 0.0836 0.0830 0.1121 -0.0121 0.0044 -0.0046 5 DA B "O5'"
26 C "C5'" . DA B 1 ? 0.0899 0.1026 0.0596 -0.0111 -0.0005 0.0126 5 DA B "C5'"
27 C "C4'" . DA B 1 ? 0.0676 0.1279 0.0718 0.0094 -0.0052 0.0141 5 DA B "C4'"
28 O "O4'" . DA B 1 ? 0.0846 0.0962 0.0851 0.0111 0.0047 0.0028 5 DA B "O4'"
29 C "C3'" . DA B 1 ? 0.0978 0.0540 0.0909 -0.0126 0.0165 0.0052 5 DA B "C3'"
30 O "O3'" . DA B 1 ? 0.0791 0.0960 0.1028 -0.0092 0.0035 0.0071 5 DA B "O3'"
31 C "C2'" . DA B 1 ? 0.1182 0.0993 0.1006 -0.0008 -0.0329 0.0169 5 DA B "C2'"
32 C "C1'" . DA B 1 ? 0.0757 0.0853 0.1300 0.0250 0.0237 0.0295 5 DA B "C1'"
33 N N9 . DA B 1 ? 0.0888 0.0681 0.1165 -0.0290 -0.0265 0.0226 5 DA B N9
34 C C8 . DA B 1 ? 0.0876 0.0994 0.1322 0.0026 -0.0242 0.0457 5 DA B C8
35 N N7 . DA B 1 ? 0.1125 0.1002 0.1079 -0.0234 -0.0164 0.0302 5 DA B N7
36 C C5 . DA B 1 ? 0.1416 0.0680 0.0699 -0.0271 -0.0132 0.0164 5 DA B C5
37 C C6 . DA B 1 ? 0.0974 0.0759 0.0649 0.0014 -0.0262 -0.0078 5 DA B C6
38 N N6 . DA B 1 ? 0.0898 0.1039 0.0939 0.0113 -0.0042 0.0002 5 DA B N6
39 N N1 . DA B 1 ? 0.0704 0.0719 0.1004 0.0080 0.0022 0.0126 5 DA B N1
40 C C2 . DA B 1 ? 0.1278 0.0961 0.0821 -0.0386 0.0399 -0.0273 5 DA B C2
41 N N3 . DA B 1 ? 0.0590 0.0645 0.1012 -0.0149 -0.0051 -0.0055 5 DA B N3
42 C C4 . DA B 1 ? 0.1260 0.0703 0.0917 0.0093 -0.0403 -0.0172 5 DA B C4
43 CO CO . CO C . ? 0.1799 0.1642 0.2491 0.0139 0.0125 0.0322 8 CO B CO
44 O O . HOH D . ? 0.1945 0.1945 0.1114 0.0000 0.0000 0.0000 103 HOH A O
45 O O . HOH D . ? 0.2190 0.1748 0.1070 0.0165 -0.0131 0.0165 104 HOH A O
46 O O . HOH D . ? 0.6333 0.3755 0.0693 -0.1318 0.0132 -0.0140 108 HOH A O
47 O O . HOH D . ? 0.7563 0.7523 0.2982 -0.4078 0.2498 -0.2031 109 HOH A O
48 O O . HOH D . ? 0.4073 0.2512 0.3998 0.0731 -0.2706 -0.0328 112 HOH A O
49 O O . HOH D . ? 0.4201 0.1106 0.0601 -0.0682 0.0074 -0.0214 113 HOH A O
50 O O . HOH D . ? 0.2736 0.1272 0.1613 0.0417 0.0837 0.0058 114 HOH A O
51 O O . HOH D . ? 0.2233 0.1673 0.1161 -0.0484 -0.0018 0.0011 117 HOH A O
52 O O . HOH D . ? 0.1417 0.1258 0.1901 -0.0391 0.0361 -0.0468 121 HOH A O
53 O O . HOH D . ? 0.1328 0.1071 0.1226 -0.0092 0.0033 0.0152 122 HOH A O
54 O O . HOH E . ? 0.1190 0.1190 0.0530 0.0000 0.0000 0.0000 101 HOH B O
55 O O . HOH E . ? 0.1343 0.0964 0.1275 -0.0257 0.0270 -0.0325 102 HOH B O
56 O O . HOH E . ? 0.0879 0.0676 0.1067 -0.0175 -0.0443 0.0256 105 HOH B O
57 O O . HOH E . ? 0.1803 0.1803 0.1351 0.0000 0.0000 0.0000 106 HOH B O
58 O O . HOH E . ? 0.2922 0.2203 0.2199 -0.0622 -0.0706 0.0408 107 HOH B O
59 O O . HOH E . ? 0.4224 0.1292 0.3928 -0.1557 -0.3514 0.1664 110 HOH B O
60 O O . HOH E . ? 0.2174 0.2590 0.3354 0.0360 -0.0203 0.0118 111 HOH B O
61 O O . HOH E . ? 0.3697 0.3484 0.4527 0.0224 0.0882 0.2023 115 HOH B O
62 O O . HOH E . ? 0.9530 0.2228 0.5212 -0.0022 -0.5054 -0.0344 116 HOH B O
63 O O . HOH E . ? 0.0838 0.0986 0.1956 0.0072 0.0162 0.0263 118 HOH B O
64 O O . HOH E . ? 0.0925 0.1121 0.1616 -0.0004 0.0318 0.0029 119 HOH B O
65 O O . HOH E . ? 0.1182 0.1163 0.1598 -0.0132 -0.0071 0.0313 120 HOH B O
66 O O . HOH E . ? 0.1143 0.1021 0.1189 -0.0258 -0.0033 0.0106 123 HOH B O
#