data_1I0T
#
_entry.id 1I0T
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.386
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1I0T pdb_00001i0t 10.2210/pdb1i0t/pdb
NDB ZD0004 ? ?
RCSB RCSB012764 ? ?
WWPDB D_1000012764 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2001-04-04
2 'Structure model' 1 1 2008-04-27
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2024-02-07
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1I0T
_pdbx_database_status.recvd_initial_deposition_date 2001-01-29
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Tereshko, V.' 1
'Wilds, C.J.' 2
'Minasov, G.' 3
'Prakash, T.P.' 4
'Maier, M.A.' 5
'Howard, A.' 6
'Wawrzak, Z.' 7
'Manoharan, M.' 8
'Egli, M.' 9
#
_citation.id primary
_citation.title
'Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments.'
_citation.journal_abbrev 'Nucleic Acids Res.'
_citation.journal_volume 29
_citation.page_first 1208
_citation.page_last 1215
_citation.year 2001
_citation.journal_id_ASTM NARHAD
_citation.country UK
_citation.journal_id_ISSN 0305-1048
_citation.journal_id_CSD 0389
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 11222771
_citation.pdbx_database_id_DOI 10.1093/nar/29.5.1208
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Tereshko, V.' 1 ?
primary 'Wilds, C.J.' 2 ?
primary 'Minasov, G.' 3 ?
primary 'Prakash, T.P.' 4 ?
primary 'Maier, M.A.' 5 ?
primary 'Howard, A.' 6 ?
primary 'Wawrzak, Z.' 7 ?
primary 'Manoharan, M.' 8 ?
primary 'Egli, M.' 9 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*CP*GP*CP*GP*CP*G)-3'" 1810.205 2 ? ? ? ?
2 non-polymer syn SPERMINE 202.340 1 ? ? ? ?
3 water nat water 18.015 40 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGCGCG
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 SPERMINE SPM
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DC n
1 4 DG n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DC 3 3 3 DC C A . n
A 1 4 DG 4 4 4 DG G A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
B 1 1 DC 1 7 7 DC C B . n
B 1 2 DG 2 8 8 DG G B . n
B 1 3 DC 3 9 9 DC C B . n
B 1 4 DG 4 10 10 DG G B . n
B 1 5 DC 5 11 11 DC C B . n
B 1 6 DG 6 12 12 DG G B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SPM 1 13 13 SPM SPM A .
D 3 HOH 1 100 100 HOH HOH A .
D 3 HOH 2 101 101 HOH HOH A .
D 3 HOH 3 103 103 HOH HOH A .
D 3 HOH 4 104 104 HOH HOH A .
D 3 HOH 5 105 105 HOH HOH A .
D 3 HOH 6 110 110 HOH HOH A .
D 3 HOH 7 111 111 HOH HOH A .
D 3 HOH 8 112 112 HOH HOH A .
D 3 HOH 9 115 115 HOH HOH A .
D 3 HOH 10 116 116 HOH HOH A .
D 3 HOH 11 117 117 HOH HOH A .
D 3 HOH 12 118 118 HOH HOH A .
D 3 HOH 13 119 119 HOH HOH A .
D 3 HOH 14 120 120 HOH HOH A .
D 3 HOH 15 121 121 HOH HOH A .
D 3 HOH 16 122 122 HOH HOH A .
D 3 HOH 17 124 124 HOH HOH A .
D 3 HOH 18 128 128 HOH HOH A .
D 3 HOH 19 131 131 HOH HOH A .
D 3 HOH 20 132 132 HOH HOH A .
D 3 HOH 21 145 145 HOH HOH A .
D 3 HOH 22 147 147 HOH HOH A .
E 3 HOH 1 102 102 HOH HOH B .
E 3 HOH 2 106 106 HOH HOH B .
E 3 HOH 3 107 107 HOH HOH B .
E 3 HOH 4 109 109 HOH HOH B .
E 3 HOH 5 113 113 HOH HOH B .
E 3 HOH 6 114 114 HOH HOH B .
E 3 HOH 7 123 123 HOH HOH B .
E 3 HOH 8 125 125 HOH HOH B .
E 3 HOH 9 129 129 HOH HOH B .
E 3 HOH 10 133 133 HOH HOH B .
E 3 HOH 11 134 134 HOH HOH B .
E 3 HOH 12 135 135 HOH HOH B .
E 3 HOH 13 136 136 HOH HOH B .
E 3 HOH 14 149 149 HOH HOH B .
E 3 HOH 15 157 157 HOH HOH B .
E 3 HOH 16 165 165 HOH HOH B .
E 3 HOH 17 173 173 HOH HOH B .
E 3 HOH 18 191 191 HOH HOH B .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
AMoRE phasing . ? 1
SHELXL-97 refinement . ? 2
DENZO 'data reduction' . ? 3
SCALEPACK 'data scaling' . ? 4
#
_cell.entry_id 1I0T
_cell.length_a 18.316
_cell.length_b 30.680
_cell.length_c 42.491
_cell.angle_alpha 90
_cell.angle_beta 90
_cell.angle_gamma 90
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1I0T
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting orthorhombic
_symmetry.Int_Tables_number 19
#
_exptl.entry_id 1I0T
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.65
_exptl_crystal.density_percent_sol 25.40
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.0
_exptl_crystal_grow.pdbx_details 'spermine, pH 6.0, VAPOR DIFFUSION, HANGING DROP at 298 K, VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type MARRESEARCH
_diffrn_detector.pdbx_collection_date 1999-11-01
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.6630
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 17-ID'
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 17-ID
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.6630
#
_reflns.entry_id 1I0T
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F -3
_reflns.d_resolution_low 20
_reflns.d_resolution_high 0.60
_reflns.number_obs 57623
_reflns.number_all 57623
_reflns.percent_possible_obs 96.0
_reflns.pdbx_Rmerge_I_obs 0.0620000
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_refine.entry_id 1I0T
_refine.ls_number_reflns_obs 57623
_refine.ls_number_reflns_all 57623
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_d_res_low 20
_refine.ls_d_res_high 0.60
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1600000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.1600000
_refine.ls_R_factor_R_free 0.1850000
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 240
_refine_hist.pdbx_number_atoms_ligand 14
_refine_hist.number_atoms_solvent 40
_refine_hist.number_atoms_total 294
_refine_hist.d_res_high 0.60
_refine_hist.d_res_low 20
#
_database_PDB_matrix.entry_id 1I0T
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1I0T
_struct.title '0.6 A STRUCTURE OF Z-DNA CGCGCG'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1I0T
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Z-form double helix, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1I0T
_struct_ref.pdbx_db_accession 1I0T
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1I0T A 1 ? 6 ? 1I0T 1 ? 6 ? 1 6
2 1 1I0T B 1 ? 6 ? 1I0T 7 ? 12 ? 7 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id SPM
_struct_site.pdbx_auth_seq_id 13
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 16
_struct_site.details 'BINDING SITE FOR RESIDUE SPM A 13'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 16 DG A 2 ? DG A 2 . ? 1_555 ?
2 AC1 16 DG A 2 ? DG A 2 . ? 4_556 ?
3 AC1 16 DC A 3 ? DC A 3 . ? 1_555 ?
4 AC1 16 DG A 4 ? DG A 4 . ? 1_555 ?
5 AC1 16 HOH D . ? HOH A 101 . ? 4_566 ?
6 AC1 16 HOH D . ? HOH A 103 . ? 1_555 ?
7 AC1 16 HOH D . ? HOH A 112 . ? 1_555 ?
8 AC1 16 HOH D . ? HOH A 119 . ? 1_555 ?
9 AC1 16 DG B 2 ? DG B 8 . ? 1_555 ?
10 AC1 16 DC B 3 ? DC B 9 . ? 4_556 ?
11 AC1 16 DC B 3 ? DC B 9 . ? 1_555 ?
12 AC1 16 DG B 4 ? DG B 10 . ? 4_556 ?
13 AC1 16 DG B 4 ? DG B 10 . ? 1_655 ?
14 AC1 16 DC B 5 ? DC B 11 . ? 1_655 ?
15 AC1 16 DG B 6 ? DG B 12 . ? 1_655 ?
16 AC1 16 HOH E . ? HOH B 173 . ? 4_556 ?
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 O
_pdbx_validate_symm_contact.auth_asym_id_1 B
_pdbx_validate_symm_contact.auth_comp_id_1 HOH
_pdbx_validate_symm_contact.auth_seq_id_1 157
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 O
_pdbx_validate_symm_contact.auth_asym_id_2 B
_pdbx_validate_symm_contact.auth_comp_id_2 HOH
_pdbx_validate_symm_contact.auth_seq_id_2 191
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 2_664
_pdbx_validate_symm_contact.dist 2.19
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 1.462 1.516 -0.054 0.008 N
2 1 C5 A DC 5 ? ? C6 A DC 5 ? ? 1.393 1.339 0.054 0.008 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DC 5 ? ? 127.51 119.70 7.81 1.20 Y
2 1 C6 A DC 5 ? ? N1 A DC 5 ? ? C2 A DC 5 ? ? 122.78 120.30 2.48 0.40 N
3 1 C4 A DC 5 ? ? C5 A DC 5 ? ? C6 A DC 5 ? ? 113.78 117.40 -3.62 0.50 N
4 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 124.80 128.60 -3.80 0.60 N
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DG A 2 ? ? 0.054 'SIDE CHAIN'
2 1 DG B 10 ? ? 0.056 'SIDE CHAIN'
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DC OP3 O N N 1
DC P P N N 2
DC OP1 O N N 3
DC OP2 O N N 4
DC "O5'" O N N 5
DC "C5'" C N N 6
DC "C4'" C N R 7
DC "O4'" O N N 8
DC "C3'" C N S 9
DC "O3'" O N N 10
DC "C2'" C N N 11
DC "C1'" C N R 12
DC N1 N N N 13
DC C2 C N N 14
DC O2 O N N 15
DC N3 N N N 16
DC C4 C N N 17
DC N4 N N N 18
DC C5 C N N 19
DC C6 C N N 20
DC HOP3 H N N 21
DC HOP2 H N N 22
DC "H5'" H N N 23
DC "H5''" H N N 24
DC "H4'" H N N 25
DC "H3'" H N N 26
DC "HO3'" H N N 27
DC "H2'" H N N 28
DC "H2''" H N N 29
DC "H1'" H N N 30
DC H41 H N N 31
DC H42 H N N 32
DC H5 H N N 33
DC H6 H N N 34
DG OP3 O N N 35
DG P P N N 36
DG OP1 O N N 37
DG OP2 O N N 38
DG "O5'" O N N 39
DG "C5'" C N N 40
DG "C4'" C N R 41
DG "O4'" O N N 42
DG "C3'" C N S 43
DG "O3'" O N N 44
DG "C2'" C N N 45
DG "C1'" C N R 46
DG N9 N Y N 47
DG C8 C Y N 48
DG N7 N Y N 49
DG C5 C Y N 50
DG C6 C N N 51
DG O6 O N N 52
DG N1 N N N 53
DG C2 C N N 54
DG N2 N N N 55
DG N3 N N N 56
DG C4 C Y N 57
DG HOP3 H N N 58
DG HOP2 H N N 59
DG "H5'" H N N 60
DG "H5''" H N N 61
DG "H4'" H N N 62
DG "H3'" H N N 63
DG "HO3'" H N N 64
DG "H2'" H N N 65
DG "H2''" H N N 66
DG "H1'" H N N 67
DG H8 H N N 68
DG H1 H N N 69
DG H21 H N N 70
DG H22 H N N 71
HOH O O N N 72
HOH H1 H N N 73
HOH H2 H N N 74
SPM N1 N N N 75
SPM C2 C N N 76
SPM C3 C N N 77
SPM C4 C N N 78
SPM N5 N N N 79
SPM C6 C N N 80
SPM C7 C N N 81
SPM C8 C N N 82
SPM C9 C N N 83
SPM N10 N N N 84
SPM C11 C N N 85
SPM C12 C N N 86
SPM C13 C N N 87
SPM N14 N N N 88
SPM HN11 H N N 89
SPM HN12 H N N 90
SPM H21 H N N 91
SPM H22 H N N 92
SPM H31 H N N 93
SPM H32 H N N 94
SPM H41 H N N 95
SPM H42 H N N 96
SPM HN5 H N N 97
SPM H61 H N N 98
SPM H62 H N N 99
SPM H71 H N N 100
SPM H72 H N N 101
SPM H81 H N N 102
SPM H82 H N N 103
SPM H91 H N N 104
SPM H92 H N N 105
SPM HN0 H N N 106
SPM H111 H N N 107
SPM H112 H N N 108
SPM H121 H N N 109
SPM H122 H N N 110
SPM H131 H N N 111
SPM H132 H N N 112
SPM HN41 H N N 113
SPM HN42 H N N 114
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DC OP3 P sing N N 1
DC OP3 HOP3 sing N N 2
DC P OP1 doub N N 3
DC P OP2 sing N N 4
DC P "O5'" sing N N 5
DC OP2 HOP2 sing N N 6
DC "O5'" "C5'" sing N N 7
DC "C5'" "C4'" sing N N 8
DC "C5'" "H5'" sing N N 9
DC "C5'" "H5''" sing N N 10
DC "C4'" "O4'" sing N N 11
DC "C4'" "C3'" sing N N 12
DC "C4'" "H4'" sing N N 13
DC "O4'" "C1'" sing N N 14
DC "C3'" "O3'" sing N N 15
DC "C3'" "C2'" sing N N 16
DC "C3'" "H3'" sing N N 17
DC "O3'" "HO3'" sing N N 18
DC "C2'" "C1'" sing N N 19
DC "C2'" "H2'" sing N N 20
DC "C2'" "H2''" sing N N 21
DC "C1'" N1 sing N N 22
DC "C1'" "H1'" sing N N 23
DC N1 C2 sing N N 24
DC N1 C6 sing N N 25
DC C2 O2 doub N N 26
DC C2 N3 sing N N 27
DC N3 C4 doub N N 28
DC C4 N4 sing N N 29
DC C4 C5 sing N N 30
DC N4 H41 sing N N 31
DC N4 H42 sing N N 32
DC C5 C6 doub N N 33
DC C5 H5 sing N N 34
DC C6 H6 sing N N 35
DG OP3 P sing N N 36
DG OP3 HOP3 sing N N 37
DG P OP1 doub N N 38
DG P OP2 sing N N 39
DG P "O5'" sing N N 40
DG OP2 HOP2 sing N N 41
DG "O5'" "C5'" sing N N 42
DG "C5'" "C4'" sing N N 43
DG "C5'" "H5'" sing N N 44
DG "C5'" "H5''" sing N N 45
DG "C4'" "O4'" sing N N 46
DG "C4'" "C3'" sing N N 47
DG "C4'" "H4'" sing N N 48
DG "O4'" "C1'" sing N N 49
DG "C3'" "O3'" sing N N 50
DG "C3'" "C2'" sing N N 51
DG "C3'" "H3'" sing N N 52
DG "O3'" "HO3'" sing N N 53
DG "C2'" "C1'" sing N N 54
DG "C2'" "H2'" sing N N 55
DG "C2'" "H2''" sing N N 56
DG "C1'" N9 sing N N 57
DG "C1'" "H1'" sing N N 58
DG N9 C8 sing Y N 59
DG N9 C4 sing Y N 60
DG C8 N7 doub Y N 61
DG C8 H8 sing N N 62
DG N7 C5 sing Y N 63
DG C5 C6 sing N N 64
DG C5 C4 doub Y N 65
DG C6 O6 doub N N 66
DG C6 N1 sing N N 67
DG N1 C2 sing N N 68
DG N1 H1 sing N N 69
DG C2 N2 sing N N 70
DG C2 N3 doub N N 71
DG N2 H21 sing N N 72
DG N2 H22 sing N N 73
DG N3 C4 sing N N 74
HOH O H1 sing N N 75
HOH O H2 sing N N 76
SPM N1 C2 sing N N 77
SPM N1 HN11 sing N N 78
SPM N1 HN12 sing N N 79
SPM C2 C3 sing N N 80
SPM C2 H21 sing N N 81
SPM C2 H22 sing N N 82
SPM C3 C4 sing N N 83
SPM C3 H31 sing N N 84
SPM C3 H32 sing N N 85
SPM C4 N5 sing N N 86
SPM C4 H41 sing N N 87
SPM C4 H42 sing N N 88
SPM N5 C6 sing N N 89
SPM N5 HN5 sing N N 90
SPM C6 C7 sing N N 91
SPM C6 H61 sing N N 92
SPM C6 H62 sing N N 93
SPM C7 C8 sing N N 94
SPM C7 H71 sing N N 95
SPM C7 H72 sing N N 96
SPM C8 C9 sing N N 97
SPM C8 H81 sing N N 98
SPM C8 H82 sing N N 99
SPM C9 N10 sing N N 100
SPM C9 H91 sing N N 101
SPM C9 H92 sing N N 102
SPM N10 C11 sing N N 103
SPM N10 HN0 sing N N 104
SPM C11 C12 sing N N 105
SPM C11 H111 sing N N 106
SPM C11 H112 sing N N 107
SPM C12 C13 sing N N 108
SPM C12 H121 sing N N 109
SPM C12 H122 sing N N 110
SPM C13 N14 sing N N 111
SPM C13 H131 sing N N 112
SPM C13 H132 sing N N 113
SPM N14 HN41 sing N N 114
SPM N14 HN42 sing N N 115
#
_ndb_struct_conf_na.entry_id 1I0T
_ndb_struct_conf_na.feature 'z-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 B DG 6 1_555 -0.200 -0.133 0.058 1.810 -3.201 2.764 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1
1 A DG 2 1_555 B DC 5 1_555 0.259 -0.168 0.128 -2.760 3.834 1.806 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1
1 A DC 3 1_555 B DG 4 1_555 -0.295 -0.154 0.030 2.807 6.271 2.776 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1
1 A DG 4 1_555 B DC 3 1_555 0.292 -0.179 0.043 -4.966 3.459 2.402 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1
1 A DC 5 1_555 B DG 2 1_555 -0.178 -0.178 -0.052 5.492 -7.915 1.095 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1
1 A DG 6 1_555 B DC 1 1_555 0.217 -0.157 0.065 -3.906 2.661 1.747 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 0.266 5.459 3.553 2.353 -1.574 -9.207 -28.654 7.356 4.222 9.516 14.221
-9.631 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ?
1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 0.655 -0.300 3.183 1.332 -6.724 -54.643 0.710 0.785 3.114 7.292 1.445
-55.039 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ?
1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.433 5.578 3.613 -1.579 1.080 -7.148 -46.785 -8.566 2.585 -8.467
-12.375 -7.399 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ?
1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 -0.704 -1.054 3.278 0.610 -0.757 -51.540 1.264 -0.769 3.271 0.871 0.701
-51.549 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ?
1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 0.097 5.520 3.702 2.341 -0.128 -6.768 -43.650 10.543 3.566 1.047 19.089
-7.162 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ?
#
_atom_sites.entry_id 1I0T
_atom_sites.fract_transf_matrix[1][1] 0.054597
_atom_sites.fract_transf_matrix[1][2] -0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.032595
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.023534
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 18.358 10.048 33.397 1.00 9.59 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 18.955 11.100 32.587 1.00 8.33 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 18.119 12.372 32.614 1.00 5.49 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 16.841 12.052 32.030 1.00 5.41 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 17.820 12.935 33.964 1.00 4.84 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 17.923 14.367 33.903 1.00 5.21 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 16.402 12.597 34.259 1.00 4.98 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 15.805 12.579 32.853 1.00 4.29 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 14.643 11.747 32.731 1.00 4.06 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 13.359 12.307 32.782 1.00 3.77 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 13.243 13.539 32.873 1.00 4.23 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 12.283 11.495 32.743 1.00 3.70 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 12.400 10.152 32.688 1.00 4.11 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 11.328 9.400 32.655 1.00 4.83 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 13.691 9.534 32.638 1.00 4.48 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 14.784 10.369 32.657 1.00 4.99 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 19.242 15.191 34.264 1.00 7.28 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 19.958 14.603 35.416 1.00 10.94 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 18.728 16.593 34.371 1.00 12.31 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 20.181 15.016 32.987 1.00 5.67 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 19.757 15.565 31.737 1.00 4.47 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 20.761 15.173 30.683 1.00 3.92 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 20.845 13.760 30.665 1.00 4.87 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 20.378 15.611 29.265 1.00 3.53 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 21.081 16.801 28.887 1.00 3.89 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 20.816 14.480 28.401 1.00 4.00 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 20.972 13.271 29.334 1.00 5.82 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 19.977 12.220 29.124 1.00 4.45 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 20.209 10.846 29.017 1.00 5.07 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 19.130 10.161 28.974 1.00 5.78 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 18.080 11.065 29.023 1.00 4.26 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 16.701 10.896 29.076 1.00 4.03 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 16.070 9.805 29.126 1.00 4.62 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 16.018 12.095 29.136 1.00 3.65 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 16.606 13.319 29.258 1.00 3.73 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 15.807 14.396 29.379 1.00 3.93 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 17.934 13.522 29.269 1.00 3.49 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 18.605 12.353 29.154 1.00 4.01 ? 2 DG A C4 1
ATOM 39 P P . DC A 1 3 ? 20.404 18.231 28.726 1.00 3.55 ? 3 DC A P 1
ATOM 40 O OP1 . DC A 1 3 ? 21.532 19.207 28.557 1.00 4.28 ? 3 DC A OP1 1
ATOM 41 O OP2 . DC A 1 3 ? 19.396 18.443 29.830 1.00 5.19 ? 3 DC A OP2 1
ATOM 42 O "O5'" . DC A 1 3 ? 19.607 18.061 27.348 1.00 4.77 ? 3 DC A "O5'" 1
ATOM 43 C "C5'" . DC A 1 3 ? 19.452 19.166 26.433 1.00 4.10 ? 3 DC A "C5'" 1
ATOM 44 C "C4'" . DC A 1 3 ? 18.027 19.201 25.874 1.00 4.46 ? 3 DC A "C4'" 1
ATOM 45 O "O4'" . DC A 1 3 ? 17.800 17.970 25.131 1.00 5.55 ? 3 DC A "O4'" 1
ATOM 46 C "C3'" . DC A 1 3 ? 16.913 19.297 26.869 1.00 4.51 ? 3 DC A "C3'" 1
ATOM 47 O "O3'" . DC A 1 3 ? 15.819 20.014 26.301 1.00 6.01 ? 3 DC A "O3'" 1
ATOM 48 C "C2'" . DC A 1 3 ? 16.490 17.880 27.057 1.00 5.10 ? 3 DC A "C2'" 1
ATOM 49 C "C1'" . DC A 1 3 ? 16.669 17.309 25.663 1.00 4.26 ? 3 DC A "C1'" 1
ATOM 50 N N1 . DC A 1 3 ? 16.951 15.877 25.646 1.00 5.14 ? 3 DC A N1 1
ATOM 51 C C2 . DC A 1 3 ? 15.892 14.967 25.746 1.00 4.21 ? 3 DC A C2 1
ATOM 52 O O2 . DC A 1 3 ? 14.735 15.451 25.803 1.00 4.65 ? 3 DC A O2 1
ATOM 53 N N3 . DC A 1 3 ? 16.116 13.633 25.794 1.00 4.30 ? 3 DC A N3 1
ATOM 54 C C4 . DC A 1 3 ? 17.367 13.205 25.739 1.00 4.49 ? 3 DC A C4 1
ATOM 55 N N4 . DC A 1 3 ? 17.594 11.882 25.845 1.00 5.79 ? 3 DC A N4 1
ATOM 56 C C5 . DC A 1 3 ? 18.479 14.084 25.604 1.00 4.97 ? 3 DC A C5 1
ATOM 57 C C6 . DC A 1 3 ? 18.248 15.396 25.549 1.00 5.32 ? 3 DC A C6 1
ATOM 58 P P . DG A 1 4 ? 15.629 21.614 26.394 1.00 6.27 ? 4 DG A P 1
ATOM 59 O OP1 . DG A 1 4 ? 16.146 22.065 27.726 1.00 6.62 ? 4 DG A OP1 1
ATOM 60 O OP2 . DG A 1 4 ? 14.194 21.862 25.987 1.00 10.77 ? 4 DG A OP2 1
ATOM 61 O "O5'" . DG A 1 4 ? 16.628 22.232 25.325 1.00 5.31 ? 4 DG A "O5'" 1
ATOM 62 C "C5'" . DG A 1 4 ? 16.338 22.063 23.917 1.00 6.40 ? 4 DG A "C5'" 1
ATOM 63 C "C4'" . DG A 1 4 ? 17.463 22.547 23.116 1.00 7.22 ? 4 DG A "C4'" 1
ATOM 64 O "O4'" . DG A 1 4 ? 18.628 21.762 23.429 1.00 5.00 ? 4 DG A "O4'" 1
ATOM 65 C "C3'" . DG A 1 4 ? 17.262 22.370 21.597 1.00 6.29 ? 4 DG A "C3'" 1
ATOM 66 O "O3'" . DG A 1 4 ? 16.632 23.572 21.098 1.00 7.93 ? 4 DG A "O3'" 1
ATOM 67 C "C2'" . DG A 1 4 ? 18.609 22.138 21.078 1.00 7.52 ? 4 DG A "C2'" 1
ATOM 68 C "C1'" . DG A 1 4 ? 19.450 21.646 22.265 1.00 4.92 ? 4 DG A "C1'" 1
ATOM 69 N N9 . DG A 1 4 ? 19.885 20.260 22.178 1.00 4.82 ? 4 DG A N9 1
ATOM 70 C C8 . DG A 1 4 ? 21.181 19.834 22.165 1.00 4.77 ? 4 DG A C8 1
ATOM 71 N N7 . DG A 1 4 ? 21.300 18.511 22.114 1.00 4.59 ? 4 DG A N7 1
ATOM 72 C C5 . DG A 1 4 ? 19.977 18.075 22.132 1.00 3.86 ? 4 DG A C5 1
ATOM 73 C C6 . DG A 1 4 ? 19.471 16.745 22.108 1.00 3.75 ? 4 DG A C6 1
ATOM 74 O O6 . DG A 1 4 ? 20.140 15.692 22.128 1.00 4.27 ? 4 DG A O6 1
ATOM 75 N N1 . DG A 1 4 ? 18.105 16.710 22.127 1.00 3.31 ? 4 DG A N1 1
ATOM 76 C C2 . DG A 1 4 ? 17.304 17.835 22.189 1.00 3.42 ? 4 DG A C2 1
ATOM 77 N N2 . DG A 1 4 ? 15.966 17.603 22.273 1.00 4.12 ? 4 DG A N2 1
ATOM 78 N N3 . DG A 1 4 ? 17.749 19.078 22.165 1.00 3.61 ? 4 DG A N3 1
ATOM 79 C C4 . DG A 1 4 ? 19.083 19.127 22.161 1.00 3.72 ? 4 DG A C4 1
ATOM 80 P P . DC A 1 5 ? 15.330 23.679 20.281 1.00 7.84 ? 5 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? 15.380 24.878 19.399 1.00 9.73 ? 5 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? 14.141 23.558 21.217 1.00 12.76 ? 5 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? 15.349 22.369 19.414 1.00 5.74 ? 5 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? 14.490 22.313 18.276 1.00 5.21 ? 5 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? 14.060 20.887 18.066 1.00 5.72 ? 5 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 15.216 20.135 17.659 1.00 6.66 ? 5 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? 13.500 20.196 19.301 1.00 5.84 ? 5 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? 12.288 19.552 18.985 1.00 6.83 ? 5 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? 14.525 19.163 19.665 1.00 7.78 ? 5 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? 15.191 18.886 18.320 1.00 5.67 ? 5 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? 16.572 18.413 18.419 1.00 6.18 ? 5 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 16.749 17.018 18.582 1.00 5.53 ? 5 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 15.767 16.279 18.593 1.00 7.35 ? 5 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 18.043 16.581 18.683 1.00 6.10 ? 5 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 19.058 17.443 18.703 1.00 6.34 ? 5 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 20.344 16.972 18.807 1.00 7.18 ? 5 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? 18.908 18.865 18.601 1.00 6.87 ? 5 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? 17.585 19.283 18.480 1.00 7.36 ? 5 DC A C6 1
ATOM 99 P P . DG A 1 6 ? 10.912 20.372 19.255 1.00 6.98 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 10.903 20.945 20.593 1.00 7.18 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 9.799 19.441 18.824 1.00 10.35 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 11.019 21.594 18.234 1.00 6.71 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 10.639 21.434 16.863 1.00 5.64 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 10.707 22.762 16.166 1.00 5.18 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 12.066 23.213 16.139 1.00 4.64 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 10.254 22.712 14.709 1.00 5.65 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 9.641 23.928 14.297 1.00 5.68 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 11.517 22.503 13.950 1.00 6.63 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 12.508 23.353 14.774 1.00 4.65 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 13.886 22.947 14.667 1.00 4.73 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 14.979 23.838 14.590 1.00 6.49 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 16.114 23.264 14.622 1.00 5.59 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 15.820 21.900 14.705 1.00 4.48 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 16.706 20.798 14.768 1.00 4.73 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 17.937 20.812 14.797 1.00 5.60 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 16.000 19.591 14.799 1.00 4.09 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 14.629 19.486 14.880 1.00 4.09 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 14.112 18.250 15.003 1.00 4.71 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 13.774 20.507 14.848 1.00 4.01 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 14.451 21.703 14.733 1.00 4.18 ? 6 DG A C4 1
ATOM 121 O "O5'" . DC B 1 1 ? 19.057 9.485 14.595 1.00 11.99 ? 7 DC B "O5'" 1
ATOM 122 C "C5'" . DC B 1 1 ? 19.018 10.870 15.038 1.00 15.37 ? 7 DC B "C5'" 1
ATOM 123 C "C4'" . DC B 1 1 ? 17.683 11.366 15.519 1.00 4.39 ? 7 DC B "C4'" 1
ATOM 124 O "O4'" . DC B 1 1 ? 17.878 12.674 16.109 1.00 4.38 ? 7 DC B "O4'" 1
ATOM 125 C "C3'" . DC B 1 1 ? 16.636 11.567 14.447 1.00 4.07 ? 7 DC B "C3'" 1
ATOM 126 O "O3'" . DC B 1 1 ? 15.321 11.367 14.926 1.00 4.93 ? 7 DC B "O3'" 1
ATOM 127 C "C2'" . DC B 1 1 ? 16.758 13.022 14.083 1.00 4.31 ? 7 DC B "C2'" 1
ATOM 128 C "C1'" . DC B 1 1 ? 17.065 13.623 15.454 1.00 3.81 ? 7 DC B "C1'" 1
ATOM 129 N N1 . DC B 1 1 ? 17.780 14.885 15.409 1.00 4.09 ? 7 DC B N1 1
ATOM 130 C C2 . DC B 1 1 ? 17.013 16.051 15.240 1.00 3.86 ? 7 DC B C2 1
ATOM 131 O O2 . DC B 1 1 ? 15.787 15.954 15.165 1.00 4.20 ? 7 DC B O2 1
ATOM 132 N N3 . DC B 1 1 ? 17.658 17.243 15.155 1.00 3.86 ? 7 DC B N3 1
ATOM 133 C C4 . DC B 1 1 ? 18.987 17.300 15.210 1.00 4.02 ? 7 DC B C4 1
ATOM 134 N N4 . DC B 1 1 ? 19.589 18.470 15.135 1.00 4.76 ? 7 DC B N4 1
ATOM 135 C C5 . DC B 1 1 ? 19.776 16.118 15.379 1.00 4.64 ? 7 DC B C5 1
ATOM 136 C C6 . DC B 1 1 ? 19.142 14.943 15.460 1.00 4.25 ? 7 DC B C6 1
ATOM 137 P P . DG B 1 2 ? 14.542 9.997 14.866 1.00 6.81 ? 8 DG B P 1
ATOM 138 O OP1 . DG B 1 2 ? 14.789 9.342 13.518 1.00 11.63 ? 8 DG B OP1 1
ATOM 139 O OP2 . DG B 1 2 ? 13.153 10.327 15.301 1.00 10.32 ? 8 DG B OP2 1
ATOM 140 O "O5'" . DG B 1 2 ? 15.250 9.053 15.938 1.00 5.31 ? 8 DG B "O5'" 1
ATOM 141 C "C5'" . DG B 1 2 ? 15.101 9.318 17.332 1.00 4.34 ? 8 DG B "C5'" 1
ATOM 142 C "C4'" . DG B 1 2 ? 16.032 8.430 18.126 1.00 3.82 ? 8 DG B "C4'" 1
ATOM 143 O "O4'" . DG B 1 2 ? 17.376 8.729 17.794 1.00 3.85 ? 8 DG B "O4'" 1
ATOM 144 C "C3'" . DG B 1 2 ? 15.900 8.649 19.628 1.00 4.39 ? 8 DG B "C3'" 1
ATOM 145 O "O3'" . DG B 1 2 ? 14.997 7.715 20.178 1.00 6.11 ? 8 DG B "O3'" 1
ATOM 146 C "C2'" . DG B 1 2 ? 17.301 8.439 20.153 1.00 5.02 ? 8 DG B "C2'" 1
ATOM 147 C "C1'" . DG B 1 2 ? 18.220 8.655 18.941 1.00 3.84 ? 8 DG B "C1'" 1
ATOM 148 N N9 . DG B 1 2 ? 19.023 9.851 18.963 1.00 4.06 ? 8 DG B N9 1
ATOM 149 C C8 . DG B 1 2 ? 20.420 9.864 18.801 1.00 5.69 ? 8 DG B C8 1
ATOM 150 N N7 . DG B 1 2 ? 20.918 11.079 18.748 1.00 5.19 ? 8 DG B N7 1
ATOM 151 C C5 . DG B 1 2 ? 19.809 11.890 18.855 1.00 4.89 ? 8 DG B C5 1
ATOM 152 C C6 . DG B 1 2 ? 19.745 13.327 18.821 1.00 4.85 ? 8 DG B C6 1
ATOM 153 O O6 . DG B 1 2 ? 20.669 14.125 18.730 1.00 6.46 ? 8 DG B O6 1
ATOM 154 N N1 . DG B 1 2 ? 18.391 13.738 18.935 1.00 4.65 ? 8 DG B N1 1
ATOM 155 C C2 . DG B 1 2 ? 17.313 12.936 18.981 1.00 4.72 ? 8 DG B C2 1
ATOM 156 N N2 . DG B 1 2 ? 16.076 13.514 19.001 1.00 6.39 ? 8 DG B N2 1
ATOM 157 N N3 . DG B 1 2 ? 17.364 11.599 19.050 1.00 4.09 ? 8 DG B N3 1
ATOM 158 C C4 . DG B 1 2 ? 18.642 11.153 18.972 1.00 4.02 ? 8 DG B C4 1
ATOM 159 P P . DC B 1 3 ? 14.398 7.881 21.601 1.00 7.33 ? 9 DC B P 1
ATOM 160 O OP1 . DC B 1 3 ? 15.487 8.092 22.552 1.00 16.24 ? 9 DC B OP1 1
ATOM 161 O OP2 . DC B 1 3 ? 13.443 6.678 21.713 1.00 16.78 ? 9 DC B OP2 1
ATOM 162 O "O5'" . DC B 1 3 ? 13.438 9.100 21.457 1.00 5.77 ? 9 DC B "O5'" 1
ATOM 163 C "C5'" . DC B 1 3 ? 12.367 9.346 22.392 1.00 5.68 ? 9 DC B "C5'" 1
ATOM 164 C "C4'" . DC B 1 3 ? 12.094 10.830 22.499 1.00 4.19 ? 9 DC B "C4'" 1
ATOM 165 O "O4'" . DC B 1 3 ? 13.227 11.463 23.123 1.00 4.43 ? 9 DC B "O4'" 1
ATOM 166 C "C3'" . DC B 1 3 ? 11.882 11.549 21.175 1.00 4.75 ? 9 DC B "C3'" 1
ATOM 167 O "O3'" . DC B 1 3 ? 10.897 12.548 21.290 1.00 4.90 ? 9 DC B "O3'" 1
ATOM 168 C "C2'" . DC B 1 3 ? 13.215 12.203 20.898 1.00 4.16 ? 9 DC B "C2'" 1
ATOM 169 C "C1'" . DC B 1 3 ? 13.655 12.547 22.328 1.00 4.21 ? 9 DC B "C1'" 1
ATOM 170 N N1 . DC B 1 3 ? 15.100 12.683 22.450 1.00 3.76 ? 9 DC B N1 1
ATOM 171 C C2 . DC B 1 3 ? 15.684 13.939 22.349 1.00 3.77 ? 9 DC B C2 1
ATOM 172 O O2 . DC B 1 3 ? 14.951 14.944 22.244 1.00 4.65 ? 9 DC B O2 1
ATOM 173 N N3 . DC B 1 3 ? 17.032 14.029 22.325 1.00 3.59 ? 9 DC B N3 1
ATOM 174 C C4 . DC B 1 3 ? 17.778 12.928 22.384 1.00 3.52 ? 9 DC B C4 1
ATOM 175 N N4 . DC B 1 3 ? 19.110 13.047 22.310 1.00 4.13 ? 9 DC B N4 1
ATOM 176 C C5 . DC B 1 3 ? 17.200 11.640 22.535 1.00 3.91 ? 9 DC B C5 1
ATOM 177 C C6 . DC B 1 3 ? 15.865 11.549 22.541 1.00 4.14 ? 9 DC B C6 1
ATOM 178 P P . DG B 1 4 ? 9.367 12.243 20.923 1.00 5.67 ? 10 DG B P 1
ATOM 179 O OP1 . DG B 1 4 ? 9.287 11.366 19.687 1.00 7.36 ? 10 DG B OP1 1
ATOM 180 O OP2 . DG B 1 4 ? 8.679 13.538 20.931 1.00 9.13 ? 10 DG B OP2 1
ATOM 181 O "O5'" . DG B 1 4 ? 8.866 11.302 22.125 1.00 4.81 ? 10 DG B "O5'" 1
ATOM 182 C "C5'" . DG B 1 4 ? 8.783 11.868 23.434 1.00 3.71 ? 10 DG B "C5'" 1
ATOM 183 C "C4'" . DG B 1 4 ? 8.272 10.819 24.388 1.00 3.45 ? 10 DG B "C4'" 1
ATOM 184 O "O4'" . DG B 1 4 ? 9.187 9.734 24.455 1.00 3.95 ? 10 DG B "O4'" 1
ATOM 185 C "C3'" . DG B 1 4 ? 8.130 11.363 25.811 1.00 3.89 ? 10 DG B "C3'" 1
ATOM 186 O "O3'" . DG B 1 4 ? 6.774 11.727 26.059 1.00 4.67 ? 10 DG B "O3'" 1
ATOM 187 C "C2'" . DG B 1 4 ? 8.528 10.229 26.711 1.00 4.18 ? 10 DG B "C2'" 1
ATOM 188 C "C1'" . DG B 1 4 ? 9.365 9.312 25.817 1.00 3.57 ? 10 DG B "C1'" 1
ATOM 189 N N9 . DG B 1 4 ? 10.809 9.307 26.069 1.00 3.55 ? 10 DG B N9 1
ATOM 190 C C8 . DG B 1 4 ? 11.549 8.166 26.188 1.00 4.01 ? 10 DG B C8 1
ATOM 191 N N7 . DG B 1 4 ? 12.835 8.378 26.218 1.00 3.88 ? 10 DG B N7 1
ATOM 192 C C5 . DG B 1 4 ? 12.945 9.751 26.105 1.00 3.73 ? 10 DG B C5 1
ATOM 193 C C6 . DG B 1 4 ? 14.086 10.586 26.077 1.00 4.16 ? 10 DG B C6 1
ATOM 194 O O6 . DG B 1 4 ? 15.266 10.205 26.076 1.00 4.97 ? 10 DG B O6 1
ATOM 195 N N1 . DG B 1 4 ? 13.767 11.931 25.996 1.00 3.58 ? 10 DG B N1 1
ATOM 196 C C2 . DG B 1 4 ? 12.475 12.425 25.854 1.00 3.37 ? 10 DG B C2 1
ATOM 197 N N2 . DG B 1 4 ? 12.353 13.737 25.666 1.00 3.88 ? 10 DG B N2 1
ATOM 198 N N3 . DG B 1 4 ? 11.393 11.648 25.879 1.00 3.28 ? 10 DG B N3 1
ATOM 199 C C4 . DG B 1 4 ? 11.696 10.344 26.018 1.00 3.22 ? 10 DG B C4 1
ATOM 200 P P . DC B 1 5 ? 6.384 13.159 26.638 1.00 4.08 ? 11 DC B P 1
ATOM 201 O OP1 . DC B 1 5 ? 4.934 13.104 26.974 1.00 6.07 ? 11 DC B OP1 1
ATOM 202 O OP2 . DC B 1 5 ? 6.855 14.213 25.703 1.00 5.16 ? 11 DC B OP2 1
ATOM 203 O "O5'" . DC B 1 5 ? 7.242 13.150 28.004 1.00 4.93 ? 11 DC B "O5'" 1
ATOM 204 C "C5'" . DC B 1 5 ? 6.864 13.982 29.116 1.00 3.86 ? 11 DC B "C5'" 1
ATOM 205 C "C4'" . DC B 1 5 ? 8.040 14.753 29.632 1.00 4.06 ? 11 DC B "C4'" 1
ATOM 206 O "O4'" . DC B 1 5 ? 9.017 13.845 30.166 1.00 4.32 ? 11 DC B "O4'" 1
ATOM 207 C "C3'" . DC B 1 5 ? 8.793 15.560 28.581 1.00 4.21 ? 11 DC B "C3'" 1
ATOM 208 O "O3'" . DC B 1 5 ? 9.248 16.780 29.146 1.00 5.39 ? 11 DC B "O3'" 1
ATOM 209 C "C2'" . DC B 1 5 ? 9.983 14.734 28.240 1.00 4.69 ? 11 DC B "C2'" 1
ATOM 210 C "C1'" . DC B 1 5 ? 10.283 14.117 29.609 1.00 4.07 ? 11 DC B "C1'" 1
ATOM 211 N N1 . DC B 1 5 ? 11.033 12.873 29.556 1.00 4.00 ? 11 DC B N1 1
ATOM 212 C C2 . DC B 1 5 ? 12.429 12.952 29.445 1.00 3.73 ? 11 DC B C2 1
ATOM 213 O O2 . DC B 1 5 ? 12.952 14.062 29.410 1.00 4.19 ? 11 DC B O2 1
ATOM 214 N N3 . DC B 1 5 ? 13.144 11.792 29.373 1.00 3.79 ? 11 DC B N3 1
ATOM 215 C C4 . DC B 1 5 ? 12.515 10.620 29.408 1.00 3.79 ? 11 DC B C4 1
ATOM 216 N N4 . DC B 1 5 ? 13.256 9.508 29.359 1.00 4.39 ? 11 DC B N4 1
ATOM 217 C C5 . DC B 1 5 ? 11.092 10.500 29.483 1.00 4.23 ? 11 DC B C5 1
ATOM 218 C C6 . DC B 1 5 ? 10.407 11.680 29.542 1.00 4.64 ? 11 DC B C6 1
ATOM 219 P P . DG B 1 6 ? 8.436 18.145 29.097 1.00 5.77 ? 12 DG B P 1
ATOM 220 O OP1 . DG B 1 6 ? 7.994 18.398 27.706 1.00 6.22 ? 12 DG B OP1 1
ATOM 221 O OP2 . DG B 1 6 ? 9.316 19.127 29.812 1.00 7.26 ? 12 DG B OP2 1
ATOM 222 O "O5'" . DG B 1 6 ? 7.084 17.899 29.888 1.00 5.47 ? 12 DG B "O5'" 1
ATOM 223 C "C5'" . DG B 1 6 ? 7.018 18.030 31.307 1.00 6.21 ? 12 DG B "C5'" 1
ATOM 224 C "C4'" . DG B 1 6 ? 5.674 17.596 31.804 1.00 6.11 ? 12 DG B "C4'" 1
ATOM 225 O "O4'" . DG B 1 6 ? 5.546 16.182 31.675 1.00 4.20 ? 12 DG B "O4'" 1
ATOM 226 C "C3'" . DG B 1 6 ? 5.460 17.867 33.284 1.00 7.09 ? 12 DG B "C3'" 1
ATOM 227 O "O3'" . DG B 1 6 ? 4.085 18.108 33.568 1.00 9.48 ? 12 DG B "O3'" 1
ATOM 228 C "C2'" . DG B 1 6 ? 5.932 16.622 33.974 1.00 5.58 ? 12 DG B "C2'" 1
ATOM 229 C "C1'" . DG B 1 6 ? 5.358 15.590 32.988 1.00 5.02 ? 12 DG B "C1'" 1
ATOM 230 N N9 . DG B 1 6 ? 5.970 14.291 32.979 1.00 4.39 ? 12 DG B N9 1
ATOM 231 C C8 . DG B 1 6 ? 5.255 13.109 32.800 1.00 5.47 ? 12 DG B C8 1
ATOM 232 N N7 . DG B 1 6 ? 6.025 12.072 32.763 1.00 6.09 ? 12 DG B N7 1
ATOM 233 C C5 . DG B 1 6 ? 7.326 12.552 32.844 1.00 4.24 ? 12 DG B C5 1
ATOM 234 C C6 . DG B 1 6 ? 8.586 11.912 32.808 1.00 3.94 ? 12 DG B C6 1
ATOM 235 O O6 . DG B 1 6 ? 8.760 10.671 32.647 1.00 5.59 ? 12 DG B O6 1
ATOM 236 N N1 . DG B 1 6 ? 9.656 12.774 32.950 1.00 3.80 ? 12 DG B N1 1
ATOM 237 C C2 . DG B 1 6 ? 9.529 14.120 33.039 1.00 3.57 ? 12 DG B C2 1
ATOM 238 N N2 . DG B 1 6 ? 10.665 14.793 33.079 1.00 4.49 ? 12 DG B N2 1
ATOM 239 N N3 . DG B 1 6 ? 8.361 14.760 33.077 1.00 3.91 ? 12 DG B N3 1
ATOM 240 C C4 . DG B 1 6 ? 7.308 13.928 32.981 1.00 3.86 ? 12 DG B C4 1
HETATM 241 N N1 . SPM C 2 . ? 23.624 18.368 26.830 1.00 4.03 ? 13 SPM A N1 1
HETATM 242 C C2 . SPM C 2 . ? 23.504 17.015 26.311 1.00 4.10 ? 13 SPM A C2 1
HETATM 243 C C3 . SPM C 2 . ? 22.295 16.903 25.390 1.00 4.29 ? 13 SPM A C3 1
HETATM 244 C C4 . SPM C 2 . ? 22.001 15.493 24.854 1.00 4.45 ? 13 SPM A C4 1
HETATM 245 N N5 . SPM C 2 . ? 23.082 14.973 23.980 1.00 4.04 ? 13 SPM A N5 1
HETATM 246 C C6 . SPM C 2 . ? 22.599 13.803 23.155 1.00 4.55 ? 13 SPM A C6 1
HETATM 247 C C7 . SPM C 2 . ? 23.674 13.174 22.328 1.00 8.90 ? 13 SPM A C7 1
HETATM 248 C C8 . SPM C 2 . ? 23.106 12.211 21.274 1.00 6.92 ? 13 SPM A C8 1
HETATM 249 C C9 . SPM C 2 . ? 24.211 11.608 20.482 1.00 7.60 ? 13 SPM A C9 1
HETATM 250 N N10 . SPM C 2 . ? 23.679 10.761 19.324 1.00 6.15 ? 13 SPM A N10 1
HETATM 251 C C11 . SPM C 2 . ? 24.749 10.378 18.342 1.00 10.73 ? 13 SPM A C11 1
HETATM 252 C C12 . SPM C 2 . ? 24.217 9.299 17.357 1.00 8.85 ? 13 SPM A C12 1
HETATM 253 C C13 . SPM C 2 . ? 25.397 8.850 16.450 1.00 9.57 ? 13 SPM A C13 1
HETATM 254 N N14 . SPM C 2 . ? 25.022 7.763 15.504 1.00 9.45 ? 13 SPM A N14 1
HETATM 255 O O . HOH D 3 . ? 16.969 17.142 30.382 1.00 5.58 ? 100 HOH A O 1
HETATM 256 O O . HOH D 3 . ? 13.570 25.535 17.368 1.00 5.81 ? 101 HOH A O 1
HETATM 257 O O . HOH D 3 . ? 23.545 16.969 22.119 1.00 6.83 ? 103 HOH A O 1
HETATM 258 O O . HOH D 3 . ? 22.646 20.894 30.466 1.00 7.82 ? 104 HOH A O 1
HETATM 259 O O . HOH D 3 . ? 11.707 6.525 32.208 1.00 7.57 ? 105 HOH A O 1
HETATM 260 O O . HOH D 3 . ? 17.128 8.370 31.398 1.00 9.99 ? 110 HOH A O 1
HETATM 261 O O . HOH D 3 . ? 13.339 16.391 27.954 1.00 7.04 ? 111 HOH A O 1
HETATM 262 O O . HOH D 3 . ? 27.568 7.887 14.194 1.00 10.39 ? 112 HOH A O 1
HETATM 263 O O . HOH D 3 . ? 14.474 18.161 29.792 1.00 13.65 ? 115 HOH A O 1
HETATM 264 O O . HOH D 3 . ? 22.037 19.459 18.285 1.00 17.86 ? 116 HOH A O 1
HETATM 265 O O . HOH D 3 . ? 13.981 19.745 23.345 1.00 14.58 ? 117 HOH A O 1
HETATM 266 O O . HOH D 3 . ? 22.389 14.961 36.699 1.00 10.54 ? 118 HOH A O 1
HETATM 267 O O . HOH D 3 . ? 23.433 9.331 13.767 1.00 8.55 ? 119 HOH A O 1
HETATM 268 O O . HOH D 3 . ? 9.306 25.101 11.873 1.00 11.13 ? 120 HOH A O 1
HETATM 269 O O . HOH D 3 . ? 9.997 19.892 22.902 1.00 16.39 ? 121 HOH A O 1
HETATM 270 O O . HOH D 3 . ? 11.339 17.891 16.407 1.00 12.99 ? 122 HOH A O 1
HETATM 271 O O . HOH D 3 . ? 12.455 21.658 22.432 1.00 17.03 ? 124 HOH A O 1
HETATM 272 O O . HOH D 3 . ? 15.915 27.478 18.548 1.00 10.99 ? 128 HOH A O 1
HETATM 273 O O . HOH D 3 . ? 18.894 21.981 17.514 1.00 15.53 ? 131 HOH A O 1
HETATM 274 O O . HOH D 3 . ? 18.106 24.588 17.912 1.00 17.89 ? 132 HOH A O 1
HETATM 275 O O . HOH D 3 . ? 17.967 24.771 15.088 1.00 14.05 ? 145 HOH A O 1
HETATM 276 O O . HOH D 3 . ? 20.489 9.228 34.787 1.00 20.87 ? 147 HOH A O 1
HETATM 277 O O . HOH E 3 . ? 9.516 14.953 24.977 1.00 6.07 ? 102 HOH B O 1
HETATM 278 O O . HOH E 3 . ? 7.835 9.730 30.150 1.00 11.29 ? 106 HOH B O 1
HETATM 279 O O . HOH E 3 . ? 10.752 17.780 32.031 1.00 11.06 ? 107 HOH B O 1
HETATM 280 O O . HOH E 3 . ? 9.236 17.694 25.376 1.00 12.23 ? 109 HOH B O 1
HETATM 281 O O . HOH E 3 . ? 21.042 8.418 12.970 1.00 9.57 ? 113 HOH B O 1
HETATM 282 O O . HOH E 3 . ? 22.414 18.410 15.669 1.00 9.08 ? 114 HOH B O 1
HETATM 283 O O . HOH E 3 . ? 5.356 10.743 28.991 1.00 22.06 ? 123 HOH B O 1
HETATM 284 O O . HOH E 3 . ? 3.452 18.718 36.150 1.00 16.41 ? 125 HOH B O 1
HETATM 285 O O . HOH E 3 . ? 13.422 12.374 17.509 1.00 23.19 ? 129 HOH B O 1
HETATM 286 O O . HOH E 3 . ? 1.866 19.226 32.429 1.00 22.00 ? 133 HOH B O 1
HETATM 287 O O . HOH E 3 . ? 10.169 8.740 19.105 1.00 18.59 ? 134 HOH B O 1
HETATM 288 O O . HOH E 3 . ? 2.765 21.418 32.674 1.00 11.68 ? 135 HOH B O 1
HETATM 289 O O . HOH E 3 . ? 2.766 11.833 25.825 1.00 18.44 ? 136 HOH B O 1
HETATM 290 O O . HOH E 3 . ? 13.975 5.234 18.545 1.00 18.81 ? 149 HOH B O 1
HETATM 291 O O . HOH E 3 . ? 15.447 10.209 11.236 1.00 14.54 ? 157 HOH B O 1
HETATM 292 O O . HOH E 3 . ? 9.076 21.506 30.943 1.00 13.25 ? 165 HOH B O 1
HETATM 293 O O . HOH E 3 . ? 17.112 8.604 24.157 1.00 25.59 ? 173 HOH B O 1
HETATM 294 O O . HOH E 3 . ? 13.153 18.596 32.476 1.00 20.16 ? 191 HOH B O 1
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