HEADER DNA-RNA HYBRID 15-NOV-95 1DRN
TITLE NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID
TITLE 2 REGION, D(GGAGA)R(UGAC)/D(GTCATCTCC)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DNA/RNA (5'-D(*GP*GP*AP*GP*A)-R(P*UP*GP*AP*C)-3');
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: DDH;
COMPND 5 ENGINEERED: YES;
COMPND 6 OTHER_DETAILS: CRYSTALLIZATION CONDITIONS\: PH 7.0, 298K, 100MM NACL,
COMPND 7 50MM NA PHOSPHATE, 3MM EDTA;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3');
COMPND 10 CHAIN: B;
COMPND 11 SYNONYM: DDH;
COMPND 12 ENGINEERED: YES;
COMPND 13 OTHER_DETAILS: CRYSTALLIZATION CONDITIONS\: PH 7.0, 298K, 100MM NACL,
COMPND 14 50MM NA PHOSPHATE, 3MM EDTA
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 OTHER_DETAILS: A SUBSTRATE OF RNASE H;
SOURCE 4 MOL_ID: 2;
SOURCE 5 SYNTHETIC: YES;
SOURCE 6 OTHER_DETAILS: A SUBSTRATE OF RNASE H
KEYWDS DOUBLE HELIX, DNA/RNA HYBRID, DNA-RNA HYBRID
EXPDTA SOLUTION NMR
AUTHOR T.NISHIZAKI,S.IWAI,T.OHKUBO,C.KOJIMA,H.NAKAMURA,Y.KYOGOKU,E.OHTSUKA
REVDAT 5 22-MAY-24 1DRN 1 REMARK
REVDAT 4 16-FEB-22 1DRN 1 REMARK
REVDAT 3 24-FEB-09 1DRN 1 VERSN
REVDAT 2 01-APR-03 1DRN 1 JRNL
REVDAT 1 03-APR-96 1DRN 0
JRNL AUTH T.NISHIZAKI,S.IWAI,T.OHKUBO,C.KOJIMA,H.NAKAMURA,Y.KYOGOKU,
JRNL AUTH 2 E.OHTSUKA
JRNL TITL SOLUTION STRUCUTRES OF DNA DUPLEXES CONTAINING A DNA X RNA
JRNL TITL 2 HYBRID REGION, D(GG)R(AGAU)D(GAC) X D(GTCATCTCC) AND
JRNL TITL 3 D(GGAGA)R(UGAC) X D(GTCATCTCC).
JRNL REF BIOCHEMISTRY V. 35 4016 1996
JRNL REFN ISSN 0006-2960
JRNL PMID 8672435
JRNL DOI 10.1021/BI9519821
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: RMSD BOND DISTANCES 0.0077 ANGSTROMS
REMARK 3 RMSD BOND ANGLES 1.40 DEGREES NUMBER OF ATOMS USED IN
REMARK 3 REFINEMENT. NUMBER OF PROTEIN ATOMS 0 NUMBER OF NUCLEIC ACID
REMARK 3 ATOMS 366 NUMBER OF HETEROGEN ATOMS 0 NUMBER OF SOLVENT ATOMS 0
REMARK 3 THE STRUCTURES WAS REFINED BY A COMBINATION OF RESTRAINED
REMARK 3 MOLECULAR DYNAMICS USING THE X-PLOR (V3.1F) PROGRAM (BRUNGER
REMARK 3 1988) AND FULL RELAXATION MATRIX REFINEMENT OF THE TWO-
REMARK 3 DIMENSIONAL NUCLEAR OVERHAUSER EFFECT SPECTRUM AT 150 MSEC.
REMARK 4
REMARK 4 1DRN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 100 THE DEPOSITION ID IS D_1000172910.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298
REMARK 210 PH : 7.0
REMARK 210 IONIC STRENGTH : NULL
REMARK 210 PRESSURE : NULL
REMARK 210 SAMPLE CONTENTS : NULL
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL
REMARK 210 SPECTROMETER FIELD STRENGTH : NULL
REMARK 210 SPECTROMETER MODEL : NULL
REMARK 210 SPECTROMETER MANUFACTURER : NULL
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NULL
REMARK 210 METHOD USED : MOLECULAR DYNAMICS, MATRIX
REMARK 210 RELAXATION
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1
REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 DG A 1 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES
REMARK 500 DG A 1 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 DG A 1 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES
REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES
REMARK 500 DG A 2 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES
REMARK 500 DG A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES
REMARK 500 DA A 3 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES
REMARK 500 DA A 3 N7 - C8 - N9 ANGL. DEV. = 4.0 DEGREES
REMARK 500 DG A 4 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES
REMARK 500 DG A 4 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES
REMARK 500 DG A 4 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES
REMARK 500 DA A 5 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES
REMARK 500 DA A 5 N7 - C8 - N9 ANGL. DEV. = 4.0 DEGREES
REMARK 500 G A 7 C3' - C2' - C1' ANGL. DEV. = 5.2 DEGREES
REMARK 500 G A 7 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES
REMARK 500 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES
REMARK 500 A A 8 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES
REMARK 500 DG B 10 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES
REMARK 500 DG B 10 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES
REMARK 500 DG B 10 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES
REMARK 500 DT B 11 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES
REMARK 500 DC B 12 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES
REMARK 500 DA B 13 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES
REMARK 500 DA B 13 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES
REMARK 500 DT B 14 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES
REMARK 500 DC B 15 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES
REMARK 500 DT B 16 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES
REMARK 500 DC B 17 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES
REMARK 500 DC B 18 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1DHH RELATED DB: PDB
REMARK 900 MINIMIZED AVERAGE STRUCTURE
DBREF 1DRN A 1 9 PDB 1DRN 1DRN 1 9
DBREF 1DRN B 10 18 PDB 1DRN 1DRN 10 18
SEQRES 1 A 9 DG DG DA DG DA U G A C
SEQRES 1 B 9 DG DT DC DA DT DC DT DC DC
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
ATOM 1 O5' DG A 1 7.748 -3.242 13.873 1.00 0.36 O
ATOM 2 C5' DG A 1 8.499 -4.363 14.345 1.00 0.34 C
ATOM 3 C4' DG A 1 8.117 -5.646 13.613 1.00 0.32 C
ATOM 4 O4' DG A 1 6.703 -5.921 13.752 1.00 0.32 O
ATOM 5 C3' DG A 1 8.437 -5.527 12.132 1.00 0.29 C
ATOM 6 O3' DG A 1 9.255 -6.630 11.716 1.00 0.32 O
ATOM 7 C2' DG A 1 7.082 -5.554 11.424 1.00 0.30 C
ATOM 8 C1' DG A 1 6.093 -6.080 12.452 1.00 0.30 C
ATOM 9 N9 DG A 1 4.818 -5.345 12.389 1.00 0.29 N
ATOM 10 C8 DG A 1 4.587 -4.012 12.445 1.00 0.29 C
ATOM 11 N7 DG A 1 3.359 -3.616 12.454 1.00 0.28 N
ATOM 12 C5 DG A 1 2.670 -4.832 12.392 1.00 0.26 C
ATOM 13 C6 DG A 1 1.273 -5.087 12.371 1.00 0.24 C
ATOM 14 O6 DG A 1 0.350 -4.279 12.418 1.00 0.23 O
ATOM 15 N1 DG A 1 1.005 -6.446 12.300 1.00 0.25 N
ATOM 16 C2 DG A 1 1.957 -7.442 12.257 1.00 0.28 C
ATOM 17 N2 DG A 1 1.504 -8.688 12.181 1.00 0.31 N
ATOM 18 N3 DG A 1 3.270 -7.214 12.280 1.00 0.28 N
ATOM 19 C4 DG A 1 3.557 -5.894 12.347 1.00 0.27 C
ATOM 20 P DG A 2 9.676 -6.817 10.173 1.00 0.33 P
ATOM 21 OP1 DG A 2 10.798 -7.781 10.112 1.00 0.40 O
ATOM 22 OP2 DG A 2 9.822 -5.476 9.563 1.00 0.33 O
ATOM 23 O5' DG A 2 8.371 -7.520 9.542 1.00 0.28 O
ATOM 24 C5' DG A 2 8.135 -8.922 9.724 1.00 0.30 C
ATOM 25 C4' DG A 2 6.981 -9.416 8.856 1.00 0.28 C
ATOM 26 O4' DG A 2 5.733 -8.776 9.231 1.00 0.26 O
ATOM 27 C3' DG A 2 7.245 -9.097 7.399 1.00 0.28 C
ATOM 28 O3' DG A 2 6.886 -10.227 6.569 1.00 0.28 O
ATOM 29 C2' DG A 2 6.375 -7.895 7.132 1.00 0.26 C
ATOM 30 C1' DG A 2 5.209 -8.063 8.093 1.00 0.24 C
ATOM 31 N9 DG A 2 4.589 -6.778 8.491 1.00 0.22 N
ATOM 32 C8 DG A 2 5.151 -5.599 8.860 1.00 0.23 C
ATOM 33 N7 DG A 2 4.353 -4.620 9.145 1.00 0.22 N
ATOM 34 C5 DG A 2 3.097 -5.207 8.949 1.00 0.19 C
ATOM 35 C6 DG A 2 1.790 -4.656 9.098 1.00 0.18 C
ATOM 36 O6 DG A 2 1.468 -3.515 9.429 1.00 0.18 O
ATOM 37 N1 DG A 2 0.808 -5.592 8.802 1.00 0.17 N
ATOM 38 C2 DG A 2 1.043 -6.892 8.412 1.00 0.19 C
ATOM 39 N2 DG A 2 -0.028 -7.640 8.174 1.00 0.21 N
ATOM 40 N3 DG A 2 2.260 -7.416 8.269 1.00 0.21 N
ATOM 41 C4 DG A 2 3.237 -6.527 8.551 1.00 0.20 C
ATOM 42 P DA A 3 6.090 -10.066 5.165 1.00 0.28 P
ATOM 43 OP1 DA A 3 6.038 -11.394 4.513 1.00 0.31 O
ATOM 44 OP2 DA A 3 6.664 -8.913 4.434 1.00 0.31 O
ATOM 45 O5' DA A 3 4.591 -9.673 5.631 1.00 0.25 O
ATOM 46 C5' DA A 3 3.575 -10.681 5.764 1.00 0.24 C
ATOM 47 C4' DA A 3 2.294 -10.326 5.002 1.00 0.21 C
ATOM 48 O4' DA A 3 1.541 -9.278 5.660 1.00 0.18 O
ATOM 49 C3' DA A 3 2.607 -9.871 3.597 1.00 0.21 C
ATOM 50 O3' DA A 3 2.190 -10.859 2.638 1.00 0.22 O
ATOM 51 C2' DA A 3 1.853 -8.569 3.416 1.00 0.18 C
ATOM 52 C1' DA A 3 1.041 -8.351 4.674 1.00 0.16 C
ATOM 53 N9 DA A 3 1.158 -6.958 5.137 1.00 0.15 N
ATOM 54 C8 DA A 3 2.260 -6.266 5.483 1.00 0.17 C
ATOM 55 N7 DA A 3 2.107 -5.048 5.878 1.00 0.17 N
ATOM 56 C5 DA A 3 0.721 -4.898 5.783 1.00 0.14 C
ATOM 57 C6 DA A 3 -0.137 -3.829 6.053 1.00 0.13 C
ATOM 58 N6 DA A 3 0.288 -2.651 6.512 1.00 0.15 N
ATOM 59 N1 DA A 3 -1.451 -4.024 5.846 1.00 0.11 N
ATOM 60 C2 DA A 3 -1.899 -5.204 5.400 1.00 0.11 C
ATOM 61 N3 DA A 3 -1.175 -6.280 5.115 1.00 0.12 N
ATOM 62 C4 DA A 3 0.136 -6.059 5.330 1.00 0.13 C
ATOM 63 P DG A 4 2.001 -10.489 1.077 1.00 0.24 P
ATOM 64 OP1 DG A 4 1.694 -11.733 0.338 1.00 0.28 O
ATOM 65 OP2 DG A 4 3.140 -9.642 0.656 1.00 0.25 O
ATOM 66 O5' DG A 4 0.672 -9.575 1.100 1.00 0.20 O
ATOM 67 C5' DG A 4 -0.539 -10.061 1.696 1.00 0.19 C
ATOM 68 C4' DG A 4 -1.732 -9.162 1.372 1.00 0.17 C
ATOM 69 O4' DG A 4 -1.641 -7.892 2.063 1.00 0.15 O
ATOM 70 C3' DG A 4 -1.803 -8.878 -0.121 1.00 0.18 C
ATOM 71 O3' DG A 4 -3.077 -9.290 -0.651 1.00 0.19 O
ATOM 72 C2' DG A 4 -1.608 -7.393 -0.234 1.00 0.17 C
ATOM 73 C1' DG A 4 -1.940 -6.839 1.132 1.00 0.15 C
ATOM 74 N9 DG A 4 -1.161 -5.625 1.422 1.00 0.14 N
ATOM 75 C8 DG A 4 0.177 -5.463 1.486 1.00 0.15 C
ATOM 76 N7 DG A 4 0.626 -4.298 1.818 1.00 0.14 N
ATOM 77 C5 DG A 4 -0.562 -3.578 1.994 1.00 0.12 C
ATOM 78 C6 DG A 4 -0.764 -2.220 2.364 1.00 0.11 C
ATOM 79 O6 DG A 4 0.078 -1.364 2.625 1.00 0.11 O
ATOM 80 N1 DG A 4 -2.114 -1.904 2.419 1.00 0.10 N
ATOM 81 C2 DG A 4 -3.146 -2.779 2.154 1.00 0.10 C
ATOM 82 N2 DG A 4 -4.376 -2.286 2.237 1.00 0.10 N
ATOM 83 N3 DG A 4 -2.968 -4.053 1.811 1.00 0.11 N
ATOM 84 C4 DG A 4 -1.660 -4.387 1.749 1.00 0.12 C
ATOM 85 P DA A 5 -3.615 -8.759 -2.079 1.00 0.21 P
ATOM 86 OP1 DA A 5 -4.748 -9.616 -2.495 1.00 0.23 O
ATOM 87 OP2 DA A 5 -2.454 -8.584 -2.981 1.00 0.24 O
ATOM 88 O5' DA A 5 -4.196 -7.295 -1.718 1.00 0.20 O
ATOM 89 C5' DA A 5 -5.531 -7.134 -1.213 1.00 0.18 C
ATOM 90 C4' DA A 5 -6.066 -5.721 -1.453 1.00 0.16 C
ATOM 91 O4' DA A 5 -5.276 -4.735 -0.747 1.00 0.16 O
ATOM 92 C3' DA A 5 -6.036 -5.384 -2.932 1.00 0.17 C
ATOM 93 O3' DA A 5 -7.363 -5.185 -3.444 1.00 0.17 O
ATOM 94 C2' DA A 5 -5.237 -4.097 -3.032 1.00 0.17 C
ATOM 95 C1' DA A 5 -5.016 -3.615 -1.613 1.00 0.16 C
ATOM 96 N9 DA A 5 -3.648 -3.089 -1.418 1.00 0.17 N
ATOM 97 C8 DA A 5 -2.458 -3.726 -1.496 1.00 0.17 C
ATOM 98 N7 DA A 5 -1.396 -3.054 -1.207 1.00 0.16 N
ATOM 99 C5 DA A 5 -1.933 -1.802 -0.902 1.00 0.16 C
ATOM 100 C6 DA A 5 -1.349 -0.595 -0.507 1.00 0.16 C
ATOM 101 N6 DA A 5 -0.035 -0.446 -0.336 1.00 0.16 N
ATOM 102 N1 DA A 5 -2.168 0.449 -0.290 1.00 0.16 N
ATOM 103 C2 DA A 5 -3.490 0.315 -0.453 1.00 0.17 C
ATOM 104 N3 DA A 5 -4.146 -0.782 -0.820 1.00 0.16 N
ATOM 105 C4 DA A 5 -3.303 -1.812 -1.030 1.00 0.16 C
ATOM 106 P U A 6 -7.600 -4.617 -4.940 1.00 0.19 P
ATOM 107 OP1 U A 6 -9.056 -4.611 -5.206 1.00 0.19 O
ATOM 108 OP2 U A 6 -6.687 -5.334 -5.859 1.00 0.21 O
ATOM 109 O5' U A 6 -7.099 -3.082 -4.826 1.00 0.19 O
ATOM 110 C5' U A 6 -7.810 -2.146 -4.005 1.00 0.18 C
ATOM 111 C4' U A 6 -7.209 -0.736 -4.051 1.00 0.18 C
ATOM 112 O4' U A 6 -5.930 -0.672 -3.393 1.00 0.19 O
ATOM 113 C3' U A 6 -7.001 -0.249 -5.481 1.00 0.20 C
ATOM 114 O3' U A 6 -8.011 0.712 -5.838 1.00 0.20 O
ATOM 115 C2' U A 6 -5.605 0.339 -5.507 1.00 0.22 C
ATOM 116 O2' U A 6 -5.576 1.681 -5.998 1.00 0.25 O
ATOM 117 C1' U A 6 -5.126 0.300 -4.081 1.00 0.20 C
ATOM 118 N1 U A 6 -3.688 -0.013 -3.994 1.00 0.20 N
ATOM 119 C2 U A 6 -2.838 0.988 -3.562 1.00 0.20 C
ATOM 120 O2 U A 6 -3.234 2.119 -3.289 1.00 0.20 O
ATOM 121 N3 U A 6 -1.508 0.647 -3.455 1.00 0.20 N
ATOM 122 C4 U A 6 -0.957 -0.589 -3.732 1.00 0.21 C
ATOM 123 O4 U A 6 0.249 -0.776 -3.598 1.00 0.21 O
ATOM 124 C5 U A 6 -1.916 -1.577 -4.175 1.00 0.21 C
ATOM 125 C6 U A 6 -3.231 -1.255 -4.297 1.00 0.20 C
ATOM 126 P G A 7 -8.139 1.294 -7.337 1.00 0.21 P
ATOM 127 OP1 G A 7 -9.556 1.640 -7.585 1.00 0.27 O
ATOM 128 OP2 G A 7 -7.429 0.377 -8.257 1.00 0.23 O
ATOM 129 O5' G A 7 -7.288 2.664 -7.239 1.00 0.16 O
ATOM 130 C5' G A 7 -7.676 3.695 -6.318 1.00 0.20 C
ATOM 131 C4' G A 7 -6.566 4.727 -6.075 1.00 0.18 C
ATOM 132 O4' G A 7 -5.474 4.188 -5.299 1.00 0.19 O
ATOM 133 C3' G A 7 -5.962 5.225 -7.376 1.00 0.13 C
ATOM 134 O3' G A 7 -6.598 6.427 -7.839 1.00 0.15 O
ATOM 135 C2' G A 7 -4.510 5.466 -7.056 1.00 0.13 C
ATOM 136 O2' G A 7 -4.209 6.852 -7.004 1.00 0.15 O
ATOM 137 C1' G A 7 -4.252 4.836 -5.722 1.00 0.16 C
ATOM 138 N9 G A 7 -3.112 3.908 -5.821 1.00 0.14 N
ATOM 139 C8 G A 7 -3.083 2.590 -6.108 1.00 0.14 C
ATOM 140 N7 G A 7 -1.928 2.005 -6.130 1.00 0.15 N
ATOM 141 C5 G A 7 -1.069 3.067 -5.821 1.00 0.12 C
ATOM 142 C6 G A 7 0.348 3.097 -5.686 1.00 0.13 C
ATOM 143 O6 G A 7 1.156 2.172 -5.794 1.00 0.18 O
ATOM 144 N1 G A 7 0.796 4.372 -5.372 1.00 0.10 N
ATOM 145 C2 G A 7 -0.006 5.482 -5.207 1.00 0.11 C
ATOM 146 N2 G A 7 0.608 6.620 -4.912 1.00 0.14 N
ATOM 147 N3 G A 7 -1.328 5.462 -5.329 1.00 0.13 N
ATOM 148 C4 G A 7 -1.793 4.233 -5.634 1.00 0.12 C
ATOM 149 P A A 8 -6.360 6.951 -9.350 1.00 0.16 P
ATOM 150 OP1 A A 8 -7.549 7.733 -9.759 1.00 0.19 O
ATOM 151 OP2 A A 8 -5.920 5.803 -10.174 1.00 0.16 O
ATOM 152 O5' A A 8 -5.112 7.968 -9.203 1.00 0.22 O
ATOM 153 C5' A A 8 -5.318 9.337 -8.831 1.00 0.33 C
ATOM 154 C4' A A 8 -3.998 10.091 -8.645 1.00 0.37 C
ATOM 155 O4' A A 8 -3.144 9.425 -7.683 1.00 0.32 O
ATOM 156 C3' A A 8 -3.211 10.179 -9.945 1.00 0.38 C
ATOM 157 O3' A A 8 -3.444 11.411 -10.643 1.00 0.50 O
ATOM 158 C2' A A 8 -1.777 10.049 -9.516 1.00 0.36 C
ATOM 159 O2' A A 8 -1.177 11.326 -9.288 1.00 0.46 O
ATOM 160 C1' A A 8 -1.820 9.254 -8.250 1.00 0.30 C
ATOM 161 N9 A A 8 -1.533 7.833 -8.535 1.00 0.21 N
ATOM 162 C8 A A 8 -2.386 6.816 -8.799 1.00 0.16 C
ATOM 163 N7 A A 8 -1.885 5.637 -8.949 1.00 0.14 N
ATOM 164 C5 A A 8 -0.522 5.888 -8.773 1.00 0.15 C
ATOM 165 C6 A A 8 0.603 5.059 -8.804 1.00 0.19 C
ATOM 166 N6 A A 8 0.527 3.742 -8.999 1.00 0.25 N
ATOM 167 N1 A A 8 1.804 5.633 -8.599 1.00 0.20 N
ATOM 168 C2 A A 8 1.893 6.949 -8.373 1.00 0.19 C
ATOM 169 N3 A A 8 0.891 7.822 -8.316 1.00 0.20 N
ATOM 170 C4 A A 8 -0.298 7.222 -8.526 1.00 0.18 C
ATOM 171 P C A 9 -3.150 11.514 -12.228 1.00 0.57 P
ATOM 172 OP1 C A 9 -3.396 12.909 -12.657 1.00 0.68 O
ATOM 173 OP2 C A 9 -3.855 10.400 -12.903 1.00 0.54 O
ATOM 174 O5' C A 9 -1.564 11.229 -12.319 1.00 0.58 O
ATOM 175 C5' C A 9 -0.627 12.164 -11.774 1.00 0.61 C
ATOM 176 C4' C A 9 0.809 11.642 -11.830 1.00 0.59 C
ATOM 177 O4' C A 9 0.963 10.413 -11.089 1.00 0.52 O
ATOM 178 C3' C A 9 1.237 11.350 -13.256 1.00 0.66 C
ATOM 179 O3' C A 9 1.881 12.482 -13.858 1.00 0.75 O
ATOM 180 C2' C A 9 2.173 10.179 -13.138 1.00 0.64 C
ATOM 181 O2' C A 9 3.536 10.618 -13.075 1.00 0.69 O
ATOM 182 C1' C A 9 1.770 9.485 -11.857 1.00 0.53 C
ATOM 183 N1 C A 9 1.020 8.248 -12.150 1.00 0.51 N
ATOM 184 C2 C A 9 1.721 7.054 -12.131 1.00 0.50 C
ATOM 185 O2 C A 9 2.938 7.053 -11.961 1.00 0.50 O
ATOM 186 N3 C A 9 1.034 5.898 -12.323 1.00 0.50 N
ATOM 187 C4 C A 9 -0.288 5.910 -12.525 1.00 0.50 C
ATOM 188 N4 C A 9 -0.924 4.753 -12.705 1.00 0.51 N
ATOM 189 C5 C A 9 -1.018 7.142 -12.550 1.00 0.51 C
ATOM 190 C6 C A 9 -0.323 8.282 -12.369 1.00 0.51 C
TER 191 C A 9
ATOM 192 O5' DG B 10 7.455 -2.937 -12.308 1.00 0.77 O
ATOM 193 C5' DG B 10 8.596 -2.427 -13.003 1.00 0.79 C
ATOM 194 C4' DG B 10 8.765 -0.927 -12.783 1.00 0.75 C
ATOM 195 O4' DG B 10 7.682 -0.180 -13.378 1.00 0.70 O
ATOM 196 C3' DG B 10 8.796 -0.599 -11.298 1.00 0.74 C
ATOM 197 O3' DG B 10 10.121 -0.221 -10.898 1.00 0.78 O
ATOM 198 C2' DG B 10 7.818 0.552 -11.119 1.00 0.69 C
ATOM 199 C1' DG B 10 7.318 0.908 -12.509 1.00 0.66 C
ATOM 200 N9 DG B 10 5.860 1.126 -12.513 1.00 0.61 N
ATOM 201 C8 DG B 10 4.859 0.234 -12.677 1.00 0.62 C
ATOM 202 N7 DG B 10 3.649 0.685 -12.706 1.00 0.58 N
ATOM 203 C5 DG B 10 3.857 2.059 -12.538 1.00 0.53 C
ATOM 204 C6 DG B 10 2.918 3.127 -12.482 1.00 0.49 C
ATOM 205 O6 DG B 10 1.693 3.079 -12.583 1.00 0.49 O
ATOM 206 N1 DG B 10 3.550 4.346 -12.301 1.00 0.47 N
ATOM 207 C2 DG B 10 4.910 4.530 -12.186 1.00 0.48 C
ATOM 208 N2 DG B 10 5.321 5.780 -12.010 1.00 0.47 N
ATOM 209 N3 DG B 10 5.800 3.538 -12.239 1.00 0.52 N
ATOM 210 C4 DG B 10 5.210 2.335 -12.416 1.00 0.55 C
ATOM 211 P DT B 11 10.432 0.261 -9.392 1.00 0.79 P
ATOM 212 OP1 DT B 11 11.883 0.531 -9.286 1.00 0.89 O
ATOM 213 OP2 DT B 11 9.789 -0.689 -8.457 1.00 0.84 O
ATOM 214 O5' DT B 11 9.649 1.665 -9.307 1.00 0.64 O
ATOM 215 C5' DT B 11 10.209 2.855 -9.876 1.00 0.58 C
ATOM 216 C4' DT B 11 9.589 4.107 -9.265 1.00 0.46 C
ATOM 217 O4' DT B 11 8.207 4.249 -9.661 1.00 0.42 O
ATOM 218 C3' DT B 11 9.639 4.034 -7.749 1.00 0.40 C
ATOM 219 O3' DT B 11 10.381 5.135 -7.202 1.00 0.36 O
ATOM 220 C2' DT B 11 8.207 4.077 -7.301 1.00 0.35 C
ATOM 221 C1' DT B 11 7.400 4.512 -8.499 1.00 0.34 C
ATOM 222 N1 DT B 11 6.123 3.783 -8.560 1.00 0.35 N
ATOM 223 C2 DT B 11 4.956 4.522 -8.550 1.00 0.29 C
ATOM 224 O2 DT B 11 4.949 5.743 -8.423 1.00 0.23 O
ATOM 225 N3 DT B 11 3.788 3.802 -8.670 1.00 0.31 N
ATOM 226 C4 DT B 11 3.683 2.431 -8.796 1.00 0.41 C
ATOM 227 O4 DT B 11 2.584 1.898 -8.915 1.00 0.43 O
ATOM 228 C5 DT B 11 4.953 1.741 -8.788 1.00 0.47 C
ATOM 229 C7 DT B 11 4.986 0.222 -8.937 1.00 0.60 C
ATOM 230 C6 DT B 11 6.109 2.422 -8.668 1.00 0.44 C
ATOM 231 P DC B 12 10.444 5.389 -5.608 1.00 0.31 P
ATOM 232 OP1 DC B 12 11.537 6.348 -5.337 1.00 0.31 O
ATOM 233 OP2 DC B 12 10.431 4.074 -4.927 1.00 0.34 O
ATOM 234 O5' DC B 12 9.038 6.123 -5.303 1.00 0.29 O
ATOM 235 C5' DC B 12 8.857 7.519 -5.588 1.00 0.27 C
ATOM 236 C4' DC B 12 7.510 8.032 -5.071 1.00 0.22 C
ATOM 237 O4' DC B 12 6.429 7.241 -5.602 1.00 0.20 O
ATOM 238 C3' DC B 12 7.455 7.978 -3.560 1.00 0.21 C
ATOM 239 O3' DC B 12 7.286 9.297 -3.014 1.00 0.28 O
ATOM 240 C2' DC B 12 6.262 7.106 -3.234 1.00 0.19 C
ATOM 241 C1' DC B 12 5.555 6.824 -4.543 1.00 0.16 C
ATOM 242 N1 DC B 12 5.233 5.395 -4.673 1.00 0.18 N
ATOM 243 C2 DC B 12 3.919 5.056 -4.914 1.00 0.15 C
ATOM 244 O2 DC B 12 3.051 5.917 -4.894 1.00 0.13 O
ATOM 245 N3 DC B 12 3.617 3.753 -5.149 1.00 0.19 N
ATOM 246 C4 DC B 12 4.572 2.820 -5.147 1.00 0.27 C
ATOM 247 N4 DC B 12 4.236 1.554 -5.394 1.00 0.32 N
ATOM 248 C5 DC B 12 5.939 3.170 -4.888 1.00 0.30 C
ATOM 249 C6 DC B 12 6.214 4.461 -4.647 1.00 0.25 C
ATOM 250 P DA B 13 6.851 9.514 -1.474 1.00 0.61 P
ATOM 251 OP1 DA B 13 6.906 10.963 -1.177 1.00 1.22 O
ATOM 252 OP2 DA B 13 7.615 8.562 -0.636 1.00 1.27 O
ATOM 253 O5' DA B 13 5.302 9.055 -1.475 1.00 0.36 O
ATOM 254 C5' DA B 13 4.276 9.941 -1.946 1.00 0.33 C
ATOM 255 C4' DA B 13 2.882 9.474 -1.530 1.00 0.26 C
ATOM 256 O4' DA B 13 2.500 8.257 -2.218 1.00 0.25 O
ATOM 257 C3' DA B 13 2.823 9.206 -0.035 1.00 0.22 C
ATOM 258 O3' DA B 13 1.796 10.014 0.578 1.00 0.24 O
ATOM 259 C2' DA B 13 2.505 7.731 0.069 1.00 0.28 C
ATOM 260 C1' DA B 13 1.890 7.375 -1.267 1.00 0.26 C
ATOM 261 N9 DA B 13 2.121 5.961 -1.602 1.00 0.25 N
ATOM 262 C8 DA B 13 3.276 5.258 -1.601 1.00 0.25 C
ATOM 263 N7 DA B 13 3.217 4.012 -1.925 1.00 0.24 N
ATOM 264 C5 DA B 13 1.851 3.852 -2.174 1.00 0.23 C
ATOM 265 C6 DA B 13 1.087 2.752 -2.568 1.00 0.22 C
ATOM 266 N6 DA B 13 1.617 1.553 -2.797 1.00 0.22 N
ATOM 267 N1 DA B 13 -0.239 2.937 -2.723 1.00 0.22 N
ATOM 268 C2 DA B 13 -0.782 4.141 -2.504 1.00 0.22 C
ATOM 269 N3 DA B 13 -0.149 5.249 -2.127 1.00 0.23 N
ATOM 270 C4 DA B 13 1.175 5.033 -1.980 1.00 0.24 C
ATOM 271 P DT B 14 1.143 9.639 2.013 1.00 0.30 P
ATOM 272 OP1 DT B 14 0.600 10.880 2.609 1.00 0.31 O
ATOM 273 OP2 DT B 14 2.122 8.827 2.772 1.00 0.37 O
ATOM 274 O5' DT B 14 -0.101 8.683 1.609 1.00 0.29 O
ATOM 275 C5' DT B 14 -1.250 9.209 0.919 1.00 0.22 C
ATOM 276 C4' DT B 14 -2.443 8.239 0.955 1.00 0.22 C
ATOM 277 O4' DT B 14 -2.143 7.026 0.245 1.00 0.24 O
ATOM 278 C3' DT B 14 -2.828 7.881 2.373 1.00 0.21 C
ATOM 279 O3' DT B 14 -4.124 8.405 2.702 1.00 0.23 O
ATOM 280 C2' DT B 14 -2.836 6.389 2.417 1.00 0.19 C
ATOM 281 C1' DT B 14 -2.588 5.898 1.012 1.00 0.20 C
ATOM 282 N1 DT B 14 -1.564 4.850 1.004 1.00 0.18 N
ATOM 283 C2 DT B 14 -1.909 3.586 0.576 1.00 0.17 C
ATOM 284 O2 DT B 14 -3.066 3.270 0.317 1.00 0.18 O
ATOM 285 N3 DT B 14 -0.873 2.680 0.492 1.00 0.16 N
ATOM 286 C4 DT B 14 0.454 2.927 0.795 1.00 0.17 C
ATOM 287 O4 DT B 14 1.298 2.045 0.663 1.00 0.18 O
ATOM 288 C5 DT B 14 0.710 4.280 1.244 1.00 0.18 C
ATOM 289 C7 DT B 14 2.133 4.719 1.590 1.00 0.20 C
ATOM 290 C6 DT B 14 -0.292 5.170 1.338 1.00 0.18 C
ATOM 291 P DC B 15 -4.776 8.147 4.155 1.00 0.24 P
ATOM 292 OP1 DC B 15 -6.026 8.936 4.249 1.00 0.28 O
ATOM 293 OP2 DC B 15 -3.716 8.325 5.174 1.00 0.27 O
ATOM 294 O5' DC B 15 -5.164 6.581 4.107 1.00 0.17 O
ATOM 295 C5' DC B 15 -6.410 6.135 3.552 1.00 0.17 C
ATOM 296 C4' DC B 15 -6.503 4.610 3.560 1.00 0.14 C
ATOM 297 O4' DC B 15 -5.366 4.018 2.920 1.00 0.13 O
ATOM 298 C3' DC B 15 -6.553 4.078 4.971 1.00 0.13 C
ATOM 299 O3' DC B 15 -7.912 3.836 5.364 1.00 0.17 O
ATOM 300 C2' DC B 15 -5.756 2.769 4.898 1.00 0.12 C
ATOM 301 C1' DC B 15 -5.142 2.732 3.511 1.00 0.12 C
ATOM 302 N1 DC B 15 -3.703 2.416 3.571 1.00 0.11 N
ATOM 303 C2 DC B 15 -3.303 1.135 3.223 1.00 0.10 C
ATOM 304 O2 DC B 15 -4.136 0.280 2.931 1.00 0.10 O
ATOM 305 N3 DC B 15 -1.970 0.856 3.223 1.00 0.11 N
ATOM 306 C4 DC B 15 -1.072 1.795 3.549 1.00 0.11 C
ATOM 307 N4 DC B 15 0.226 1.494 3.508 1.00 0.12 N
ATOM 308 C5 DC B 15 -1.490 3.116 3.914 1.00 0.12 C
ATOM 309 C6 DC B 15 -2.800 3.375 3.915 1.00 0.12 C
ATOM 310 P DT B 16 -8.262 3.120 6.765 1.00 0.20 P
ATOM 311 OP1 DT B 16 -9.711 3.282 7.016 1.00 0.32 O
ATOM 312 OP2 DT B 16 -7.283 3.572 7.780 1.00 0.23 O
ATOM 313 O5' DT B 16 -7.977 1.568 6.446 1.00 0.18 O
ATOM 314 C5' DT B 16 -8.765 0.869 5.475 1.00 0.19 C
ATOM 315 C4' DT B 16 -8.401 -0.611 5.415 1.00 0.18 C
ATOM 316 O4' DT B 16 -7.021 -0.781 5.050 1.00 0.16 O
ATOM 317 C3' DT B 16 -8.624 -1.290 6.759 1.00 0.16 C
ATOM 318 O3' DT B 16 -9.679 -2.253 6.651 1.00 0.17 O
ATOM 319 C2' DT B 16 -7.311 -1.964 7.094 1.00 0.15 C
ATOM 320 C1' DT B 16 -6.419 -1.781 5.885 1.00 0.15 C
ATOM 321 N1 DT B 16 -5.075 -1.367 6.297 1.00 0.14 N
ATOM 322 C2 DT B 16 -4.042 -2.251 6.096 1.00 0.14 C
ATOM 323 O2 DT B 16 -4.225 -3.386 5.666 1.00 0.15 O
ATOM 324 N3 DT B 16 -2.790 -1.799 6.439 1.00 0.13 N
ATOM 325 C4 DT B 16 -2.484 -0.555 6.961 1.00 0.13 C
ATOM 326 O4 DT B 16 -1.321 -0.253 7.212 1.00 0.14 O
ATOM 327 C5 DT B 16 -3.636 0.300 7.148 1.00 0.14 C
ATOM 328 C7 DT B 16 -3.462 1.702 7.734 1.00 0.15 C
ATOM 329 C6 DT B 16 -4.866 -0.127 6.818 1.00 0.14 C
ATOM 330 P DC B 17 -10.011 -3.265 7.858 1.00 0.14 P
ATOM 331 OP1 DC B 17 -11.143 -4.123 7.440 1.00 0.14 O
ATOM 332 OP2 DC B 17 -10.103 -2.478 9.108 1.00 0.15 O
ATOM 333 O5' DC B 17 -8.678 -4.179 7.933 1.00 0.15 O
ATOM 334 C5' DC B 17 -8.553 -5.372 7.146 1.00 0.19 C
ATOM 335 C4' DC B 17 -7.407 -6.265 7.639 1.00 0.21 C
ATOM 336 O4' DC B 17 -6.124 -5.666 7.409 1.00 0.19 O
ATOM 337 C3' DC B 17 -7.513 -6.536 9.119 1.00 0.21 C
ATOM 338 O3' DC B 17 -8.170 -7.787 9.370 1.00 0.25 O
ATOM 339 C2' DC B 17 -6.079 -6.563 9.595 1.00 0.21 C
ATOM 340 C1' DC B 17 -5.227 -6.166 8.409 1.00 0.20 C
ATOM 341 N1 DC B 17 -4.230 -5.149 8.783 1.00 0.17 N
ATOM 342 C2 DC B 17 -2.885 -5.478 8.702 1.00 0.17 C
ATOM 343 O2 DC B 17 -2.540 -6.614 8.383 1.00 0.18 O
ATOM 344 N3 DC B 17 -1.970 -4.514 8.995 1.00 0.15 N
ATOM 345 C4 DC B 17 -2.359 -3.282 9.349 1.00 0.14 C
ATOM 346 N4 DC B 17 -1.427 -2.372 9.633 1.00 0.15 N
ATOM 347 C5 DC B 17 -3.755 -2.946 9.430 1.00 0.15 C
ATOM 348 C6 DC B 17 -4.638 -3.912 9.147 1.00 0.16 C
ATOM 349 P DC B 18 -8.590 -8.219 10.866 1.00 0.31 P
ATOM 350 OP1 DC B 18 -9.729 -9.158 10.773 1.00 0.37 O
ATOM 351 OP2 DC B 18 -8.711 -6.994 11.689 1.00 0.31 O
ATOM 352 O5' DC B 18 -7.300 -9.038 11.374 1.00 0.35 O
ATOM 353 C5' DC B 18 -7.065 -10.386 10.944 1.00 0.38 C
ATOM 354 C4' DC B 18 -5.733 -10.906 11.475 1.00 0.41 C
ATOM 355 O4' DC B 18 -4.646 -10.078 11.030 1.00 0.38 O
ATOM 356 C3' DC B 18 -5.730 -10.921 12.979 1.00 0.45 C
ATOM 357 O3' DC B 18 -5.929 -12.244 13.473 1.00 0.52 O
ATOM 358 C2' DC B 18 -4.371 -10.389 13.380 1.00 0.44 C
ATOM 359 C1' DC B 18 -3.720 -9.874 12.110 1.00 0.38 C
ATOM 360 N1 DC B 18 -3.379 -8.446 12.242 1.00 0.32 N
ATOM 361 C2 DC B 18 -2.038 -8.096 12.243 1.00 0.30 C
ATOM 362 O2 DC B 18 -1.170 -8.961 12.151 1.00 0.32 O
ATOM 363 N3 DC B 18 -1.717 -6.779 12.359 1.00 0.26 N
ATOM 364 C4 DC B 18 -2.670 -5.846 12.472 1.00 0.25 C
ATOM 365 N4 DC B 18 -2.318 -4.568 12.583 1.00 0.25 N
ATOM 366 C5 DC B 18 -4.053 -6.201 12.474 1.00 0.27 C
ATOM 367 C6 DC B 18 -4.361 -7.508 12.357 1.00 0.30 C
TER 368 DC B 18
MASTER 123 0 0 0 0 0 0 6 366 2 0 2
END